galaxy-commits June 2017

galaxy-commits@lists.galaxyproject.org

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76 discussions

[galaxyproject/infrastructure-playbook] 86239e: Slurm DBD/Slurm controller improvements and reloca...
by GitHub 01 Jun '17

01 Jun '17

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 86239ef77522e797bfdc0b66737976e96f1d87de https://github.com/galaxyproject/infrastructure-playbook/commit/86239ef7752… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-06-01 (Thu, 01 Jun 2017) Changed paths: M common_roles A roles/mariadb/handlers/main.yml A roles/mariadb/tasks/install_redhat.yml A roles/mariadb/tasks/main.yml A roles/slurm/meta/main.yml R roles/slurm/tasks/elastic.yml M roles/slurm/tasks/main.yml A roles/slurm/tasks/slurmctld.yml A roles/slurm/tasks/slurmd.yml A roles/slurm/tasks/slurmdbd.yml M roles/slurm/templates/slurmdbd.conf.j2 M taccenv/group_vars/all.yml M taccenv/group_vars/galaxyservers.yml M taccenv/group_vars/slurmclients.yml A taccenv/group_vars/slurmdbdservers/vars.yml A taccenv/group_vars/slurmdbdservers/vault.yml M taccenv/inventory M taccenv/templates/slurm/slurm.conf.j2 Log Message: ----------- Slurm DBD/Slurm controller improvements and relocation to galaxy08

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[galaxyproject/usegalaxy-playbook] 622272: move rna_star to different destination
by GitHub 01 Jun '17

01 Jun '17

Branch: refs/heads/reorg Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 622272d426088faad13f230d765b6cb42d2aa2dd https://github.com/galaxyproject/usegalaxy-playbook/commit/622272d426088faa… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-06-01 (Thu, 01 Jun 2017) Changed paths: M env/main/templates/galaxy/config/job_conf.xml.j2 Log Message: ----------- move rna_star to different destination to dynamic_local_stampede_select_dynamic_walltime

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[galaxyproject/usegalaxy-playbook] 5d772e: IE version update missed w/ last Main update commi...
by GitHub 01 Jun '17

01 Jun '17

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 5d772ebe86f5c12dcd2947f9105e857af9b07a0f https://github.com/galaxyproject/usegalaxy-playbook/commit/5d772ebe86f5c12d… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-06-01 (Thu, 01 Jun 2017) Changed paths: M production/files/interactive_environments/plugins/.ansible_ie_role_current_version M production/files/interactive_environments/proxy/.ansible_ie_role_current_version Log Message: ----------- IE version update missed w/ last Main update commit

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[galaxyproject/usegalaxy-playbook] 9b34d3: move rna_star to different destination
by GitHub 01 Jun '17

01 Jun '17

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 9b34d3babc373b9324722a4647fd3dd2d821a2f4 https://github.com/galaxyproject/usegalaxy-playbook/commit/9b34d3babc373b93… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-06-01 (Thu, 01 Jun 2017) Changed paths: M templates/galaxy/usegalaxy.org/config/job_conf.xml.j2 Log Message: ----------- move rna_star to different destination to dynamic_local_stampede_select_dynamic_walltime

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[galaxyproject/galaxy] 7cdbd7: exclude merge-labeled issues
by GitHub 01 Jun '17

01 Jun '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 7cdbd78ccd6937db39a1d2a9beab2a5455cdd0ab https://github.com/galaxyproject/galaxy/commit/7cdbd78ccd6937db39a1d2a9beab… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-05-16 (Tue, 16 May 2017) Changed paths: M scripts/bootstrap_history.py Log Message: ----------- exclude merge-labeled issues from the link to check for release notes completeness Commit: 31d85f590b2ad94bd429c7040b5754448ec5596b https://github.com/galaxyproject/galaxy/commit/31d85f590b2ad94bd429c7040b57… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-05-17 (Wed, 17 May 2017) Changed paths: M scripts/bootstrap_history.py Log Message: ----------- minor improvements to release checklist Commit: 8a9603f45142b4f310b7a385cbefd6e8c7fa6609 https://github.com/galaxyproject/galaxy/commit/8a9603f45142b4f310b7a385cbef… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-05-17 (Wed, 17 May 2017) Changed paths: M scripts/bootstrap_history.py Log Message: ----------- add more checlist items from #1643 Commit: e43ef79576bde74a295264d3f9249a055c25c614 https://github.com/galaxyproject/galaxy/commit/e43ef79576bde74a295264d3f924… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-06-01 (Thu, 01 Jun 2017) Changed paths: M scripts/bootstrap_history.py Log Message: ----------- Merge pull request #4077 from martenson/improve-release-process Improve release checklist Compare: https://github.com/galaxyproject/galaxy/compare/8b7b5b6c8ef8...e43ef79576bd

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[galaxyproject/galaxy] f3aa53: Improved styling of workflow list. Removed unused...
by GitHub 01 Jun '17

01 Jun '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: f3aa53261db8a19a358d7a2ce6a75a3532f93025 https://github.com/galaxyproject/galaxy/commit/f3aa53261db8a19a358d7a2ce6a7… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-06-01 (Thu, 01 Jun 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css Log Message: ----------- Improved styling of workflow list. Removed unused class, used hierarchy in base.less. Commit: 8b7b5b6c8ef89d7fca2a88f301689ff8e43f11e8 https://github.com/galaxyproject/galaxy/commit/8b7b5b6c8ef89d7fca2a88f30168… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-06-01 (Thu, 01 Jun 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css Log Message: ----------- Merge pull request #4138 from dannon/workflow_display_styling Improved styling of workflow list. Compare: https://github.com/galaxyproject/galaxy/compare/b6597d43f39b...8b7b5b6c8ef8

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galaxy-commits June 2017