galaxy-commits July 2017

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[galaxyproject/galaxy] 51df43: Support Localization Scratchbook
by GitHub 12 Jul '17

12 Jul '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 51df43b98a9fc78a4ade71313eda571ab72f0af6 https://github.com/galaxyproject/galaxy/commit/51df43b98a9fc78a4ade71313eda… Author: Manabu ISHII <manabu.ishii.rb(a)gmail.com> Date: 2017-07-12 (Wed, 12 Jul 2017) Changed paths: M client/galaxy/scripts/layout/scratchbook.js Log Message: ----------- Support Localization Scratchbook Commit: bf63ea2bdc480dcbe4a12b5dc1bbaf7475e99536 https://github.com/galaxyproject/galaxy/commit/bf63ea2bdc480dcbe4a12b5dc1bb… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-07-12 (Wed, 12 Jul 2017) Changed paths: M client/galaxy/scripts/layout/scratchbook.js Log Message: ----------- Merge pull request #4307 from manabuishii/patch-7 Support Localization Scratchbook Compare: https://github.com/galaxyproject/galaxy/compare/030eaf83ac42...bf63ea2bdc48

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[galaxyproject/galaxy] 324d78: Turn all item selection grids from mako to diction...
by GitHub 12 Jul '17

12 Jul '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 324d78a5639b30a07c3afc3bed01508c4092a19f https://github.com/galaxyproject/galaxy/commit/324d78a5639b30a07c3afc3bed01… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-07-07 (Fri, 07 Jul 2017) Changed paths: M lib/galaxy/webapps/galaxy/controllers/page.py M templates/webapps/galaxy/page/select_items_grid.mako Log Message: ----------- Turn all item selection grids from mako to dictionary response mode Commit: dfa4343e8fc717c4aa521ba8b55ce5cf306369d7 https://github.com/galaxyproject/galaxy/commit/dfa4343e8fc717c4aa521ba8b55c… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-07-07 (Fri, 07 Jul 2017) Changed paths: R templates/webapps/galaxy/page/select_items_grid.mako Log Message: ----------- Remove selection grid mako Commit: 7ae74c51d9eb9705f3171965a1f02e6c5ff69bf3 https://github.com/galaxyproject/galaxy/commit/7ae74c51d9eb9705f3171965a1f0… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-07-07 (Fri, 07 Jul 2017) Changed paths: M templates/webapps/galaxy/page/editor.mako Log Message: ----------- Remove unused, legacy link Commit: 8a7783809f40fad9556725f5cc59fa816f164175 https://github.com/galaxyproject/galaxy/commit/8a7783809f40fad9556725f5cc59… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-07-07 (Fri, 07 Jul 2017) Changed paths: M client/galaxy/scripts/galaxy.pages.js M client/galaxy/scripts/mvc/grid/grid-view.js M static/maps/galaxy.pages.js.map M static/maps/mvc/grid/grid-view.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/galaxy.pages.js M static/scripts/mvc/grid/grid-view.js Log Message: ----------- Use grid view to build embedded selection grids for pages Commit: 378319776bd1a7537053b1c2b3a9e65b58b63c8a https://github.com/galaxyproject/galaxy/commit/378319776bd1a7537053b1c2b3a9… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-07-07 (Fri, 07 Jul 2017) Changed paths: M client/galaxy/scripts/galaxy.pages.js M static/maps/galaxy.pages.js.map M static/scripts/galaxy.pages.js Log Message: ----------- Add insert and embed functions Commit: 3fcd73ee35fe4c9101bc04f36310153e72db9cfa https://github.com/galaxyproject/galaxy/commit/3fcd73ee35fe4c9101bc04f36310… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-07-07 (Fri, 07 Jul 2017) Changed paths: M client/galaxy/scripts/galaxy.pages.js M static/maps/galaxy.pages.js.map M static/scripts/galaxy.pages.js Log Message: ----------- Remove change to original handler function Commit: 030eaf83ac4226c052159357bd65ad9279cacf5d https://github.com/galaxyproject/galaxy/commit/030eaf83ac4226c052159357bd65… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-07-12 (Wed, 12 Jul 2017) Changed paths: M client/galaxy/scripts/galaxy.pages.js M client/galaxy/scripts/mvc/grid/grid-view.js M lib/galaxy/webapps/galaxy/controllers/page.py M static/maps/galaxy.pages.js.map M static/maps/mvc/grid/grid-view.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/galaxy.pages.js M static/scripts/mvc/grid/grid-view.js M templates/webapps/galaxy/page/editor.mako R templates/webapps/galaxy/page/select_items_grid.mako Log Message: ----------- Merge pull request #4293 from guerler/grid_pages_selection_grid Use dictionary endpoints for item selection grids in page editor Compare: https://github.com/galaxyproject/galaxy/compare/45288ccce067...030eaf83ac42

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[galaxyproject/galaxy] 0bc083: Initialize PithosObjectStore (Pithos backend)
by GitHub 11 Jul '17

11 Jul '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 0bc0833bd14992cc8db9329ec1fcfa8d312869c1 https://github.com/galaxyproject/galaxy/commit/0bc0833bd14992cc8db9329ec1fc… Author: Stavros Sachtouris <saxtouri(a)admin.grnet.gr> Date: 2017-07-11 (Tue, 11 Jul 2017) Changed paths: M lib/galaxy/dependencies/__init__.py M lib/galaxy/dependencies/conditional-requirements.txt M lib/galaxy/objectstore/__init__.py A lib/galaxy/objectstore/pithos.py Log Message: ----------- Initialize PithosObjectStore (Pithos backend) Introduce galay.objectstore.pithos module Create the PithosObjectStore class Create auxiliary methods to: - define/parse configuration for Pithos+ - authenticate with Synnefo - initialize a Pithos+ client Commit: fe6a983a881507c157cdb614a414e3d38fb3c622 https://github.com/galaxyproject/galaxy/commit/fe6a983a881507c157cdb614a414… Author: Stavros Sachtouris <saxtouri(a)admin.grnet.gr> Date: 2017-07-11 (Tue, 11 Jul 2017) Changed paths: M lib/galaxy/objectstore/pithos.py Log Message: ----------- Implement "exists" and "_construct_path" methods The "_construct_path" constructs a path from an object and will also be used in methods to follow. Commit: 8049c0f76d25f9efb96cc6bb5ebbcee9ebc93489 https://github.com/galaxyproject/galaxy/commit/8049c0f76d25f9efb96cc6bb5ebb… Author: Stavros Sachtouris <saxtouri(a)admin.grnet.gr> Date: 2017-07-11 (Tue, 11 Jul 2017) Changed paths: M lib/galaxy/objectstore/pithos.py Log Message: ----------- Implement some cache-based methods + basic cache Methods: exists, create, size, delete, get_data, get_filename Also, implemented basic cache functionality: _get_cache_path, _in_cache, _fix_permissions, _pull_into_cache Did not implement a "_pull_from_cache" method, since kamaki offers simple commands for this. Commit: f0626839114e96a7427d9b114a1d91efa6c9eafe https://github.com/galaxyproject/galaxy/commit/f0626839114e96a7427d9b114a1d… Author: Stavros Sachtouris <saxtouri(a)admin.grnet.gr> Date: 2017-07-11 (Tue, 11 Jul 2017) Changed paths: M lib/galaxy/objectstore/pithos.py Log Message: ----------- Implement methods for sync, share and quotas Namely: update_from_file, get_object_url, get_store_usage_percent Commit: c9966dfc465d4026b8dd3a423f3d482a6a82ee5d https://github.com/galaxyproject/galaxy/commit/c9966dfc465d4026b8dd3a423f3d… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2017-07-11 (Tue, 11 Jul 2017) Changed paths: M lib/galaxy/objectstore/pithos.py Log Message: ----------- Add catch import errors for conditional request Commit: 45288ccce067c138045de62a378df855d3fe1913 https://github.com/galaxyproject/galaxy/commit/45288ccce067c138045de62a378d… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-07-11 (Tue, 11 Jul 2017) Changed paths: M lib/galaxy/dependencies/__init__.py M lib/galaxy/dependencies/conditional-requirements.txt M lib/galaxy/objectstore/__init__.py A lib/galaxy/objectstore/pithos.py Log Message: ----------- Merge pull request #3611 from saxtouri/feature-pithos Synnefo/Pithos+ object store backend Compare: https://github.com/galaxyproject/galaxy/compare/3d98ce7d8601...45288ccce067

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[galaxyproject/galaxy] 4761e2: Redirect masthead link to client endpoint
by GitHub 10 Jul '17

10 Jul '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 4761e2ccdddd9d14b49acd8952fee2a817aa8c1d https://github.com/galaxyproject/galaxy/commit/4761e2ccdddd9d14b49acd8952fe… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-07-07 (Fri, 07 Jul 2017) Changed paths: M client/galaxy/scripts/layout/menu.js M static/maps/layout/menu.js.map M static/scripts/layout/menu.js Log Message: ----------- Redirect masthead link to client endpoint Commit: a8a9ac3abe68968e4f801a2e0af76b282eb31648 https://github.com/galaxyproject/galaxy/commit/a8a9ac3abe68968e4f801a2e0af7… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-07-07 (Fri, 07 Jul 2017) Changed paths: R templates/webapps/galaxy/history/list_published.mako Log Message: ----------- Remove published histories mako Commit: 60ae053671ee8e9a1c50c6660ae80090c4d24172 https://github.com/galaxyproject/galaxy/commit/60ae053671ee8e9a1c50c6660ae8… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-07-07 (Fri, 07 Jul 2017) Changed paths: M lib/galaxy/webapps/galaxy/controllers/history.py Log Message: ----------- Modify controller endpoint to return dict instead of filled mako template Commit: fbabc0e8e4202006005ad325430d84f90ebf570e https://github.com/galaxyproject/galaxy/commit/fbabc0e8e4202006005ad325430d… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-07-07 (Fri, 07 Jul 2017) Changed paths: M lib/galaxy/webapps/galaxy/buildapp.py Log Message: ----------- Register endpoint as client side endpoint Commit: 411268c013cc669341146f420097d8f1f7dfdf11 https://github.com/galaxyproject/galaxy/commit/411268c013cc669341146f420097… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-07-07 (Fri, 07 Jul 2017) Changed paths: M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map Log Message: ----------- Apply webpack Commit: 3d98ce7d8601761fe73753ade116cdd4a11126c4 https://github.com/galaxyproject/galaxy/commit/3d98ce7d8601761fe73753ade116… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-07-10 (Mon, 10 Jul 2017) Changed paths: M client/galaxy/scripts/layout/menu.js M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/galaxy/controllers/history.py M static/maps/layout/menu.js.map M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/layout/menu.js R templates/webapps/galaxy/history/list_published.mako Log Message: ----------- Merge pull request #4291 from guerler/grid_published_histories Grid published histories Compare: https://github.com/galaxyproject/galaxy/compare/0d9b60fd749f...3d98ce7d8601

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[galaxyproject/galaxy] f439fd: conditional postclick execution onNext
by GitHub 10 Jul '17

10 Jul '17

Branch: refs/heads/release_17.05 Home: https://github.com/galaxyproject/galaxy Commit: f439fd30eb1f803daf8e1898bc1648c8cee131f8 https://github.com/galaxyproject/galaxy/commit/f439fd30eb1f803daf8e1898bc16… Author: Andrea Bagnacani <andrea.bagnacani(a)uni-rostock.de> Date: 2017-06-26 (Mon, 26 Jun 2017) Changed paths: M client/galaxy/scripts/mvc/tours.js M static/maps/mvc/tool/tool-form-base.js.map M static/maps/mvc/tours.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/tool/tool-form-base.js M static/scripts/mvc/tours.js Log Message: ----------- conditional postclick execution onNext Commit: e58b24db6133720edf442ca85702e4bba050e9c9 https://github.com/galaxyproject/galaxy/commit/e58b24db6133720edf442ca85702… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-07-10 (Mon, 10 Jul 2017) Changed paths: M client/galaxy/scripts/mvc/tours.js M static/maps/mvc/tool/tool-form-base.js.map M static/maps/mvc/tours.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/tool/tool-form-base.js M static/scripts/mvc/tours.js Log Message: ----------- Merge pull request #4228 from bagnacan/release_17.05_backport_4062 [17.05] conditional postclick execution onNext Compare: https://github.com/galaxyproject/galaxy/compare/fc613d2d60c1...e58b24db6133

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[galaxyproject/galaxy] 390afd: Updating the node tooltip to add confidence level ...
by GitHub 08 Jul '17

08 Jul '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 390afd6e83c2d8d4a885a28e91664045d6102b1c https://github.com/galaxyproject/galaxy/commit/390afd6e83c2d8d4a885a28e9166… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-07-06 (Thu, 06 Jul 2017) Changed paths: M client/galaxy/scripts/viz/phyloviz.js M static/maps/viz/phyloviz.js.map M static/scripts/viz/phyloviz.js Log Message: ----------- Updating the node tooltip to add confidence level information Commit: ee948063e1795342404187b59faed172e4cfa16d https://github.com/galaxyproject/galaxy/commit/ee948063e1795342404187b59fae… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-07-07 (Fri, 07 Jul 2017) Changed paths: M client/galaxy/scripts/viz/phyloviz.js M static/maps/viz/phyloviz.js.map M static/scripts/viz/phyloviz.js Log Message: ----------- Show the confidence value as text on phylogenetic tree branches Commit: 23f3a31d277586a107dc1ecead5191e335b901dc https://github.com/galaxyproject/galaxy/commit/23f3a31d277586a107dc1ecead51… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-07-07 (Fri, 07 Jul 2017) Changed paths: M client/galaxy/scripts/viz/phyloviz.js M static/maps/viz/phyloviz.js.map M static/scripts/viz/phyloviz.js Log Message: ----------- Round off the confidence values Commit: c26d06839190e8d75d744bc4884cb670e44a77ee https://github.com/galaxyproject/galaxy/commit/c26d06839190e8d75d744bc4884c… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-07-07 (Fri, 07 Jul 2017) Changed paths: M client/galaxy/scripts/viz/phyloviz.js M static/maps/viz/phyloviz.js.map M static/scripts/viz/phyloviz.js Log Message: ----------- Update logic to show node name and bootstrap Commit: 574b470eb29d7e0ee7b5d70a75ab031286ca673c https://github.com/galaxyproject/galaxy/commit/574b470eb29d7e0ee7b5d70a75ab… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-07-07 (Fri, 07 Jul 2017) Changed paths: M client/galaxy/style/less/galaxy_bootstrap/overrides.less M lib/galaxy/datatypes/tabular.py M lib/galaxy/tools/__init__.py M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/style/blue/base.css Log Message: ----------- Merge branch 'dev' of https://github.com/bgruening/galaxy into enhancement_phylocanvas Commit: 0d9b60fd749fe5affab68618984d8d1272ca0a76 https://github.com/galaxyproject/galaxy/commit/0d9b60fd749fe5affab68618984d… Author: Björn Grüning <bjoern(a)gruenings.eu> Date: 2017-07-08 (Sat, 08 Jul 2017) Changed paths: M client/galaxy/scripts/viz/phyloviz.js M static/maps/viz/phyloviz.js.map M static/scripts/viz/phyloviz.js Log Message: ----------- Merge pull request #4292 from bgruening/enhancement_phylocanvas Enhancement for Phyloviz viz plugin Compare: https://github.com/galaxyproject/galaxy/compare/c169c3a0908a...0d9b60fd749f

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[galaxyproject/galaxy] ac44db: Update tool_conf.xml.main to reflect main's curren...
by GitHub 07 Jul '17

07 Jul '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: ac44dbb533284bb47e4190b16821311984129d8a https://github.com/galaxyproject/galaxy/commit/ac44dbb533284bb47e4190b16821… Author: Dave B <dave(a)bx.psu.edu> Date: 2017-07-07 (Fri, 07 Jul 2017) Changed paths: M config/tool_conf.xml.main Log Message: ----------- Update tool_conf.xml.main to reflect main's current state. Commit: c169c3a0908addeff88bae6a86f2e5ef199aeb3c https://github.com/galaxyproject/galaxy/commit/c169c3a0908addeff88bae6a86f2… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2017-07-07 (Fri, 07 Jul 2017) Changed paths: M config/tool_conf.xml.main Log Message: ----------- Merge pull request #4295 from davebx/update_main_tool_conf Update tool_conf.xml.main to reflect main's current state. Compare: https://github.com/galaxyproject/galaxy/compare/ba5549b47193...c169c3a0908a

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[galaxyproject/galaxy] 26d48c: Fix empty tabular output error when using discover...
by GitHub 06 Jul '17

06 Jul '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 26d48c876cd2bd39bd8c0e404d54e6de520ce1df https://github.com/galaxyproject/galaxy/commit/26d48c876cd2bd39bd8c0e404d54… Author: Pierrick Roger Mele <pierrick.rogermele(a)icloud.com> Date: 2017-06-26 (Mon, 26 Jun 2017) Changed paths: M lib/galaxy/datatypes/tabular.py A tools/mtbls-dwnld Log Message: ----------- Fix empty tabular output error when using discover_datasets. Commit: 4b9b3724e87e7ea0c6b81da36df5f6b00124c6c6 https://github.com/galaxyproject/galaxy/commit/4b9b3724e87e7ea0c6b81da36df5… Author: Pierrick Roger Mele <pierrick.rogermele(a)icloud.com> Date: 2017-06-28 (Wed, 28 Jun 2017) Changed paths: R tools/mtbls-dwnld Log Message: ----------- Remove tool symbolic link added by accident. Commit: edbe273a95d727278b37c4457912e27355ec2cf3 https://github.com/galaxyproject/galaxy/commit/edbe273a95d727278b37c4457912… Author: Pierrick Roger Mele <pierrick.rogermele(a)icloud.com> Date: 2017-06-28 (Wed, 28 Jun 2017) Changed paths: M .ci/flake8_lint_include_list.txt M .ci/py3_sources.txt M .gitignore M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/apps/panels/tool-panel.js M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/layout/page.js M client/galaxy/scripts/layout/panel.js M client/galaxy/scripts/mvc/grid/grid-view.js A client/galaxy/scripts/mvc/history/history-list.js M client/galaxy/scripts/mvc/history/history-view-edit-current.js M client/galaxy/scripts/mvc/history/options-menu.js M client/galaxy/scripts/mvc/tool/tool-form-base.js M client/galaxy/scripts/mvc/tool/tool-form-composite.js M client/galaxy/scripts/mvc/tool/tool-form.js M client/galaxy/scripts/mvc/user/user-preferences.js M client/galaxy/scripts/mvc/webhooks.js M client/galaxy/scripts/mvc/workflow/workflow-configure-menu.js M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/scripts/onload.js M client/galaxy/scripts/utils/utils.js M client/galaxy/style/less/base.less M config/plugins/interactive_environments/neo/config/allowed_images.yml.sample M config/plugins/interactive_environments/neo/config/neo.ini.sample M config/plugins/interactive_environments/neo/config/neo.xml M config/plugins/webhooks/demo/search/config/searchover.yaml M config/plugins/webhooks/demo/search/static/script.js M config/plugins/webhooks/demo/tool_list/helper/__init__.py A config/plugins/webhooks/demo/tour_generator/config/tour_generator.yml A config/plugins/webhooks/demo/tour_generator/helper/__init__.py A config/plugins/webhooks/demo/tour_generator/static/script.js A config/plugins/webhooks/demo/tour_generator/static/styles.css M cron/updateucsc.sh.sample M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/registry.py M lib/galaxy/model/__init__.py M lib/galaxy/tools/deps/container_resolvers/mulled.py M lib/galaxy/tools/deps/containers.py M lib/galaxy/tools/deps/mulled/invfile.lua M lib/galaxy/tools/deps/mulled/mulled_build.py M lib/galaxy/tools/deps/mulled/mulled_build_files.py M lib/galaxy/tools/deps/mulled/mulled_build_tool.py M lib/galaxy/tools/parameters/basic.py M lib/galaxy/tools/wrappers.py M lib/galaxy/webapps/galaxy/api/webhooks.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/galaxy/controllers/history.py M lib/galaxy/webapps/galaxy/controllers/visualization.py M lib/galaxy/webapps/galaxy/controllers/workflow.py M scripts/api/library_upload_dir.py M static/maps/layout/menu.js.map M static/maps/layout/page.js.map M static/maps/layout/panel.js.map M static/maps/mvc/grid/grid-view.js.map A static/maps/mvc/history/history-list.js.map M static/maps/mvc/history/history-view-edit-current.js.map M static/maps/mvc/history/options-menu.js.map M static/maps/mvc/tool/tool-form-base.js.map M static/maps/mvc/tool/tool-form-composite.js.map M static/maps/mvc/tool/tool-form.js.map M static/maps/mvc/user/user-preferences.js.map M static/maps/mvc/webhooks.js.map M static/maps/mvc/workflow/workflow-configure-menu.js.map M static/maps/mvc/workflow/workflow.js.map M static/maps/onload.js.map M static/maps/utils/utils.js.map M static/scripts/bundled/admin.bundled.js M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/layout/menu.js M static/scripts/layout/page.js M static/scripts/layout/panel.js M static/scripts/mvc/grid/grid-view.js A static/scripts/mvc/history/history-list.js M static/scripts/mvc/history/history-view-edit-current.js M static/scripts/mvc/history/options-menu.js M static/scripts/mvc/tool/tool-form-base.js M static/scripts/mvc/tool/tool-form-composite.js M static/scripts/mvc/tool/tool-form.js M static/scripts/mvc/user/user-preferences.js M static/scripts/mvc/webhooks.js M static/scripts/mvc/workflow/workflow-configure-menu.js M static/scripts/mvc/workflow/workflow.js M static/scripts/onload.js M static/scripts/utils/utils.js M static/style/blue/base.css M templates/js-app.mako R templates/webapps/galaxy/history/grid.mako R templates/webapps/galaxy/history/grid_js.mako R templates/webapps/galaxy/visualization/list_published.mako R templates/webapps/galaxy/workflow/import.mako R templates/webapps/galaxy/workflow/list_published.mako R templates/webapps/galaxy/workflow/run.mako M test/functional/tools/sample_datatypes_conf.xml M test/functional/webhooks/phdcomics/helper/__init__.py M test/functional/webhooks/trans_object/helper/__init__.py M tools/filters/wc_gnu.xml Log Message: ----------- Merge branch 'dev' into issue-4231-fix-empty-tabular-output Commit: 8b0187317564d70b3a5bc5f67ee78461879fd43e https://github.com/galaxyproject/galaxy/commit/8b0187317564d70b3a5bc5f67ee7… Author: Pierrick Roger Mele <pierrick.rogermele(a)icloud.com> Date: 2017-07-06 (Thu, 06 Jul 2017) Changed paths: M lib/galaxy/datatypes/tabular.py Log Message: ----------- Implement Nicola Sorenzo's proposal for set_meta() method. Commit: 2a737d0b794d03d16774bcd6250561eda92d9abc https://github.com/galaxyproject/galaxy/commit/2a737d0b794d03d16774bcd62505… Author: Pierrick Roger Mele <pierrick.rogermele(a)icloud.com> Date: 2017-07-06 (Thu, 06 Jul 2017) Changed paths: M lib/galaxy/datatypes/tabular.py Log Message: ----------- Set two blank lines before class definition, in order for travis linting to pass. Commit: ba5549b47193f1ac87a2fa8d145e3d4d1541c554 https://github.com/galaxyproject/galaxy/commit/ba5549b47193f1ac87a2fa8d145e… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2017-07-06 (Thu, 06 Jul 2017) Changed paths: M lib/galaxy/datatypes/tabular.py Log Message: ----------- Merge pull request #4240 from pierrickrogermele/issue-4231-fix-empty-tabular-output Fix empty tabular output error when using discover_datasets. Compare: https://github.com/galaxyproject/galaxy/compare/e7731684518e...ba5549b47193

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[galaxyproject/galaxy] 3c488b: Return empty tool_version when tool is not loaded ...
by GitHub 06 Jul '17

06 Jul '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 3c488b24d0c5dd2460a7f82346c5dde5bb8bae78 https://github.com/galaxyproject/galaxy/commit/3c488b24d0c5dd2460a7f82346c5… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-07-06 (Thu, 06 Jul 2017) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Return empty tool_version when tool is not loaded into tool panel Commit: e7731684518eec8336234994f32dda7246a5f5e0 https://github.com/galaxyproject/galaxy/commit/e7731684518eec8336234994f32d… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-07-06 (Thu, 06 Jul 2017) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Merge pull request #4285 from mvdbeek/fix_wf_editor_crash_uninstalled_tool Return empty tool_version when tool is not loaded into tool panel Compare: https://github.com/galaxyproject/galaxy/compare/8b3c10553b26...e7731684518e

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[galaxyproject/galaxy] eb5843: Remove p style under blockquote
by GitHub 06 Jul '17

06 Jul '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: eb5843643298e0c8ac5f2a568ffed1cba47adb21 https://github.com/galaxyproject/galaxy/commit/eb5843643298e0c8ac5f2a568ffe… Author: E Rasche <hxr(a)hx42.org> Date: 2017-07-04 (Tue, 04 Jul 2017) Changed paths: M client/galaxy/style/less/galaxy_bootstrap/overrides.less M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/style/blue/base.css Log Message: ----------- Remove p style under blockquote Commit: 8b3c10553b26fed01c6825c47df397bacdf5d5a2 https://github.com/galaxyproject/galaxy/commit/8b3c10553b26fed01c6825c47df3… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-07-06 (Thu, 06 Jul 2017) Changed paths: M client/galaxy/style/less/galaxy_bootstrap/overrides.less M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/style/blue/base.css Log Message: ----------- Merge remote-tracking branch 'erasche/blockquotep' into dev (rebuilt client as well) Compare: https://github.com/galaxyproject/galaxy/compare/1ecaa0698732...8b3c10553b26

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