galaxy-commits September 2017

galaxy-commits@lists.galaxyproject.org

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193 discussions

[galaxyproject/galaxy] caed7b: Use only latest publication
by GitHub 25 Sep '17

25 Sep '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: caed7b60aa98153049fa2e26f5855833e7cdfce0 https://github.com/galaxyproject/galaxy/commit/caed7b60aa98153049fa2e26f585… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2017-09-25 (Mon, 25 Sep 2017) Changed paths: M CITATION Log Message: ----------- Use only latest publication Commit: 9f2582e9fbed242498810aa67c508a26eb6196fa https://github.com/galaxyproject/galaxy/commit/9f2582e9fbed242498810aa67c50… Author: Dave Clements <clements(a)galaxyproject.org> Date: 2017-09-25 (Mon, 25 Sep 2017) Changed paths: M CITATION Log Message: ----------- Merge pull request #4688 from nsoranzo/citation_fixes Use only latest publication Compare: https://github.com/galaxyproject/galaxy/compare/1c2c59526714...9f2582e9fbed

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[galaxyproject/galaxy] 0b1dd6: Selenium - bug fix for history test options.
by GitHub 25 Sep '17

25 Sep '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 0b1dd637a98c9b878972a3b7b0faf783a045f2b3 https://github.com/galaxyproject/galaxy/commit/0b1dd637a98c9b878972a3b7b0fa… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-24 (Sun, 24 Sep 2017) Changed paths: M test/galaxy_selenium/navigates_galaxy.py Log Message: ----------- Selenium - bug fix for history test options. Wait on something useful instead of picking an arbitrary sleep time and praying. Commit: aa825d22aa8ec934fc4ec2a30f20fc821c8e3c0b https://github.com/galaxyproject/galaxy/commit/aa825d22aa8ec934fc4ec2a30f20… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-24 (Sun, 24 Sep 2017) Changed paths: M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/test_saved_histories.py Log Message: ----------- Selenium - fix transient issue with saved histories test. Commit: 76fe60180a4b9059d0fb110573e93bf6274be893 https://github.com/galaxyproject/galaxy/commit/76fe60180a4b9059d0fb110573e9… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-24 (Sun, 24 Sep 2017) Changed paths: M test/selenium_tests/framework.py Log Message: ----------- Selenium - fix bug where snapshots might be used in tests before it is setup. Commit: 4a4d0498d6a371dc8ddaa226d33ff5cf0a897e69 https://github.com/galaxyproject/galaxy/commit/4a4d0498d6a371dc8ddaa226d33f… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-24 (Sun, 24 Sep 2017) Changed paths: M test/galaxy_selenium/navigates_galaxy.py Log Message: ----------- Selenium - better fix for upload build click before callback registered. Should fix this transient failure. https://jenkins.galaxyproject.org/job/selenium/568/artifact/568-test-errors… Commit: 6168e243b28cd85b8b8b719acc55d3e2108af43a https://github.com/galaxyproject/galaxy/commit/6168e243b28cd85b8b8b719acc55… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-24 (Sun, 24 Sep 2017) Changed paths: M test/selenium_tests/test_custom_builds.py Log Message: ----------- Selenium - fix rerunning test errors for test_custom_builds. Fixed similar problem for saved histories tests with 341667437ae718258a8d543c4e09d187f7f85326. Should fix this problem https://jenkins.galaxyproject.org/job/selenium/568/artifact/568-test-errors…. Commit: c90a84e1c211daf680b7e0a8c7aca246bc3152cf https://github.com/galaxyproject/galaxy/commit/c90a84e1c211daf680b7e0a8c7ac… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-24 (Sun, 24 Sep 2017) Changed paths: M test/selenium_tests/test_saved_histories.py Log Message: ----------- Selenium - fix transient error in history switching test. History sometimes takes longer than that second to switch in the GUI, so start a retry cycle on that assertion after a half a second. xref https://jenkins.galaxyproject.org/job/selenium/586/artifact/586-test-errors… Commit: 97cf3b94d1571401f3d57a83dd1a644ff356e772 https://github.com/galaxyproject/galaxy/commit/97cf3b94d1571401f3d57a83dd1a… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-24 (Sun, 24 Sep 2017) Changed paths: M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/test_anon_history.py Log Message: ----------- Selenium - fix transiently failing test caused by not waiting on anonymous history loading. After logging out - may need to a wait a second to give the UI and backend a chance to create a new history for the now anoymous user. Pause and let that happen. xref https://jenkins.galaxyproject.org/job/selenium/585/artifact/585-test-errors… Commit: 9d3ed321be4d0179616af7478eb96bb358b29607 https://github.com/galaxyproject/galaxy/commit/9d3ed321be4d0179616af7478eb9… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-24 (Sun, 24 Sep 2017) Changed paths: M test/selenium_tests/test_saved_histories.py Log Message: ----------- Selenium - fix transient history in test_saved_histories related to fetching history names. xref https://jenkins.galaxyproject.org/job/selenium/588/artifact/588-test-errors… Commit: 9f5309688eb17b92d4733a7f9752f97e5a4139db https://github.com/galaxyproject/galaxy/commit/9f5309688eb17b92d4733a7f9752… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-24 (Sun, 24 Sep 2017) Changed paths: M test/selenium_tests/test_saved_histories.py Log Message: ----------- Import order fix. Commit: 1c2c59526714b00fdf17dd854fe65719df976eba https://github.com/galaxyproject/galaxy/commit/1c2c59526714b00fdf17dd854fe6… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-09-25 (Mon, 25 Sep 2017) Changed paths: M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/framework.py M test/selenium_tests/test_anon_history.py M test/selenium_tests/test_custom_builds.py M test/selenium_tests/test_saved_histories.py Log Message: ----------- Merge pull request #4687 from jmchilton/selenium_fixes_34 Ever more Selenium fixes. Compare: https://github.com/galaxyproject/galaxy/compare/c20ac3c820c3...1c2c59526714

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[galaxyproject/galaxy] 4311f5: nicer logging for sentry
by GitHub 25 Sep '17

25 Sep '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 4311f5574dbf82574599b4947cc2721a1132675e https://github.com/galaxyproject/galaxy/commit/4311f5574dbf82574599b4947cc2… Author: E Rasche <hxr(a)hx42.org> Date: 2017-09-25 (Mon, 25 Sep 2017) Changed paths: M lib/galaxy/visualization/plugins/interactive_environments.py Log Message: ----------- nicer logging for sentry Commit: c20ac3c820c30c70dfbe4de12b645350ec15cf7c https://github.com/galaxyproject/galaxy/commit/c20ac3c820c30c70dfbe4de12b64… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-09-25 (Mon, 25 Sep 2017) Changed paths: M lib/galaxy/visualization/plugins/interactive_environments.py Log Message: ----------- Merge pull request #4693 from erasche/ie-logging-patch-sentry Nicer logging message for sentry Compare: https://github.com/galaxyproject/galaxy/compare/70ba94763e85...c20ac3c820c3

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[galaxyproject/galaxy] 9f4c72: Un-pin flake8 deps for dev branch
by GitHub 25 Sep '17

25 Sep '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 9f4c72a345ff629ea4b1430026d15decddf38617 https://github.com/galaxyproject/galaxy/commit/9f4c72a345ff629ea4b1430026d1… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2017-09-25 (Mon, 25 Sep 2017) Changed paths: M tox.ini Log Message: ----------- Un-pin flake8 deps for dev branch Commit: 70ba94763e8547ed761d6ba42dc14ff72f5f8320 https://github.com/galaxyproject/galaxy/commit/70ba94763e8547ed761d6ba42dc1… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-25 (Mon, 25 Sep 2017) Changed paths: M tox.ini Log Message: ----------- Merge pull request #4689 from nsoranzo/unpin_flake8_deps Un-pin flake8 deps for dev branch Compare: https://github.com/galaxyproject/galaxy/compare/0c23d40b22b6...70ba94763e85

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[galaxyproject/galaxy] 2495ce: Remove overly chatty debug statement in workflow o...
by GitHub 25 Sep '17

25 Sep '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 2495ceae267da873813d2dc1aae145b686d18672 https://github.com/galaxyproject/galaxy/commit/2495ceae267da873813d2dc1aae1… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/jobs/actions/post.py Log Message: ----------- Remove overly chatty debug statement in workflow output cleanup -- this happens pretty often and much of the time is not a problem at all. If we have to track down any new issues with workflow output cleanup, it's easy enough to temporarily add this logging. Commit: 244fc834cd4dd3980cc3edb755d22ca5a9372421 https://github.com/galaxyproject/galaxy/commit/244fc834cd4dd3980cc3edb755d2… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M scripts/common_startup.sh Log Message: ----------- Explicitly include PyPI as an --extra-index-url to pip so we can install from PyPI even when a package exists (but the correct version or architecture does not exist) on wheels.galaxyproject.org. Previously, PyPI was only checked after wheels.galaxyproject.org because pypiserver performs an automatic redirect to PyPI for any packages that do not exist in its index. Commit: 832da6ca66cba8fe155adccd4d327289c9e04430 https://github.com/galaxyproject/galaxy/commit/832da6ca66cba8fe155adccd4d32… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M scripts/common_startup.sh Log Message: ----------- Merge pull request #4674 from natefoo/use-pypi [17.09] Explicitly include PyPI as an --extra-index-url to pip Commit: 74ad0acb52031355c7efe28b00d1d9b0205174f2 https://github.com/galaxyproject/galaxy/commit/74ad0acb52031355c7efe28b00d1… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/jobs/command_factory.py M lib/galaxy/jobs/runners/pulsar.py M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh Log Message: ----------- Remove repetition in Galaxy env setup in the job script and fix issues with remote metadata on Pulsar. Commit: 276af4db2ab5e81f4af8f35b7d09f48d9fed8dcd https://github.com/galaxyproject/galaxy/commit/276af4db2ab5e81f4af8f35b7d09… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/jobs/command_factory.py M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh Log Message: ----------- Job script enhancements based on feedback. Commit: 53095d688be81a36c31b9721caebf58b383cfe72 https://github.com/galaxyproject/galaxy/commit/53095d688be81a36c31b9721caeb… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/command_factory.py M lib/galaxy/jobs/runners/pulsar.py M lib/galaxy/model/metadata.py Log Message: ----------- Fix remote datatypes_conf.xml and registry.xml param rewriting with Pulsar Commit: db5185cca0bb9b5f59d8fcf218eb4c5d81cb5911 https://github.com/galaxyproject/galaxy/commit/db5185cca0bb9b5f59d8fcf218eb… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/jobs/runners/pulsar.py Log Message: ----------- Pulsar release was 0.8.0 not 0.7.5 Commit: 2669ab022ed2f90faac54c510014f87783efeaa0 https://github.com/galaxyproject/galaxy/commit/2669ab022ed2f90faac54c510014… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/runners/pulsar.py Log Message: ----------- Pass job output file unqualified names to Pulsar so that it can create them before running the job. Commit: 3344c77a188cd92ffb2e7150a4f4a2f4f7facedb https://github.com/galaxyproject/galaxy/commit/3344c77a188cd92ffb2e7150a4f4… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/dependencies/pinned-requirements.txt Log Message: ----------- Bump pulsar lib version to 0.8.0 for output touch support. Commit: c7699cd3a0e16b9522af334cf2ea1a107fbe5f57 https://github.com/galaxyproject/galaxy/commit/c7699cd3a0e16b9522af334cf2ea… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/jobs/runners/pulsar.py Log Message: ----------- Fix lint error Commit: 27a28e2c406d274e396cf3cb095576ebae9cd38c https://github.com/galaxyproject/galaxy/commit/27a28e2c406d274e396cf3cb0955… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-22 (Fri, 22 Sep 2017) Changed paths: M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/runners/pulsar.py Log Message: ----------- Merge pull request #4662 from natefoo/pulsar-touch-outputs [17.09] Pass job output file unqualified names to Pulsar so that it can create them before running the job Commit: d1be9e6a8fa1a383b3f75d1ea5f1b0d486b69258 https://github.com/galaxyproject/galaxy/commit/d1be9e6a8fa1a383b3f75d1ea5f1… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-22 (Fri, 22 Sep 2017) Changed paths: M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/command_factory.py M lib/galaxy/jobs/runners/pulsar.py M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh M lib/galaxy/model/metadata.py Log Message: ----------- Merge pull request #4622 from natefoo/pulsar-remote-metadata-fixes [17.09] Pulsar remote metadata fixes Commit: 7896413b2b6a55ea99958504134ab6027baefbe8 https://github.com/galaxyproject/galaxy/commit/7896413b2b6a55ea99958504134a… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-23 (Sat, 23 Sep 2017) Changed paths: M lib/galaxy/jobs/actions/post.py Log Message: ----------- Merge pull request #4671 from dannon/remove_debug [17.09] Remove chatty debug statement Commit: 41013563e5e15745fd2bf796340578f6d758fbe8 https://github.com/galaxyproject/galaxy/commit/41013563e5e15745fd2bf7963405… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-09-24 (Sun, 24 Sep 2017) Changed paths: M CITATION Log Message: ----------- Update CITATION file with 2016 paper Commit: 3ae6318b02e61fcf997b6d2726f12851f51aa802 https://github.com/galaxyproject/galaxy/commit/3ae6318b02e61fcf997b6d2726f1… Author: Eric Rasche <hxr(a)hx42.org> Date: 2017-09-25 (Mon, 25 Sep 2017) Changed paths: M CITATION Log Message: ----------- Merge pull request #4686 from mvdbeek/citation_update Update CITATION file with 2016 paper Commit: 0c23d40b22b659abc3636b76a15fb7d392cbb92f https://github.com/galaxyproject/galaxy/commit/0c23d40b22b659abc3636b76a15f… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2017-09-25 (Mon, 25 Sep 2017) Changed paths: M CITATION M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/actions/post.py M lib/galaxy/jobs/command_factory.py M lib/galaxy/jobs/runners/pulsar.py M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh M lib/galaxy/model/metadata.py M scripts/common_startup.sh Log Message: ----------- Merge branch 'release_17.09' into dev Compare: https://github.com/galaxyproject/galaxy/compare/9e4259192dd7...0c23d40b22b6

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[galaxyproject/galaxy] 410135: Update CITATION file with 2016 paper
by GitHub 25 Sep '17

25 Sep '17

Branch: refs/heads/release_17.09 Home: https://github.com/galaxyproject/galaxy Commit: 41013563e5e15745fd2bf796340578f6d758fbe8 https://github.com/galaxyproject/galaxy/commit/41013563e5e15745fd2bf7963405… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-09-24 (Sun, 24 Sep 2017) Changed paths: M CITATION Log Message: ----------- Update CITATION file with 2016 paper Commit: 3ae6318b02e61fcf997b6d2726f12851f51aa802 https://github.com/galaxyproject/galaxy/commit/3ae6318b02e61fcf997b6d2726f1… Author: Eric Rasche <hxr(a)hx42.org> Date: 2017-09-25 (Mon, 25 Sep 2017) Changed paths: M CITATION Log Message: ----------- Merge pull request #4686 from mvdbeek/citation_update Update CITATION file with 2016 paper Compare: https://github.com/galaxyproject/galaxy/compare/7896413b2b6a...3ae6318b02e6

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[galaxyproject/galaxy]
by GitHub 25 Sep '17

25 Sep '17

Branch: refs/heads/afgane-patch-1 Home: https://github.com/galaxyproject/galaxy

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[galaxyproject/galaxy]
by GitHub 25 Sep '17

25 Sep '17

Branch: refs/heads/revert-4356-revert-4355-patch-wrong-folder-id Home: https://github.com/galaxyproject/galaxy

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[galaxyproject/galaxy] 31e272: Selenium - handle potentially stale elements when ...
by GitHub 23 Sep '17

23 Sep '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 31e2721aabf1eaec6f91c71e4f78ee7543da8f7f https://github.com/galaxyproject/galaxy/commit/31e2721aabf1eaec6f91c71e4f78… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-22 (Fri, 22 Sep 2017) Changed paths: M test/galaxy_selenium/navigates_galaxy.py Log Message: ----------- Selenium - handle potentially stale elements when fetching tags. https://jenkins.galaxyproject.org/job/selenium/529/artifact/529-test-errors… Commit: 9e6e340adc99884a88dc50a2d6d35cdbd3f74fc6 https://github.com/galaxyproject/galaxy/commit/9e6e340adc99884a88dc50a2d6d3… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-22 (Fri, 22 Sep 2017) Changed paths: M test/selenium_tests/test_workflow_management.py Log Message: ----------- Selenium - handle potentially stale search box on workflow index page. https://jenkins.galaxyproject.org/job/selenium/530/artifact/530-test-errors… Commit: 3ffdfc67e75a608c05b35086233d40d7c09440cd https://github.com/galaxyproject/galaxy/commit/3ffdfc67e75a608c05b35086233d… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-22 (Fri, 22 Sep 2017) Changed paths: M test/galaxy_selenium/has_driver.py M test/galaxy_selenium/navigates_galaxy.py Log Message: ----------- Selenium - catch popups fading out as transitions to retry various actions on. Previously we only detected transitions for retrying actions based on stale element exceptions, this expands that to include popups that may be fading out for instance. I think this is what is happening with the transiently failing test here https://jenkins.galaxyproject.org/job/selenium/528/artifact/528-test-errors…. The exception indicates that a click was not clickable because a modal element that was fading out - though it had been previously clickable. I think this should fix that. Commit: 77b61ba82d3eec55c5acd2ae4ad3ec9fde0cc9db https://github.com/galaxyproject/galaxy/commit/77b61ba82d3eec55c5acd2ae4ad3… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-22 (Fri, 22 Sep 2017) Changed paths: M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/test_history_options.py Log Message: ----------- Selenium - attempted fix for transiently failing history options test. Comments inline about this - but the target failure I'm hoping this fixes is: https://jenkins.galaxyproject.org/job/selenium/528/artifact/528-test-errors… Commit: 17348a62fe92716ed80cac6f0925e5d5c3203deb https://github.com/galaxyproject/galaxy/commit/17348a62fe92716ed80cac6f0925… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-22 (Fri, 22 Sep 2017) Changed paths: M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/test_published_histories_grid.py M test/selenium_tests/test_workflow_management.py Log Message: ----------- Selenium - more robust inline searching for published histories grid. Refactor recent search improvement for workflow management into a method that can be shared with published histories grid. Should address the transient failure test here: https://jenkins.galaxyproject.org/job/selenium/521/artifact/521-test-errors… Commit: cf037fcc0c0e1f8954361812ec36d14515c8f3ab https://github.com/galaxyproject/galaxy/commit/cf037fcc0c0e1f8954361812ec36… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-22 (Fri, 22 Sep 2017) Changed paths: M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/test_workflow_editor.py Log Message: ----------- Selenium - more robust modal checking in test_workflow_editor. During this transient failure: https://jenkins.galaxyproject.org/job/selenium/519/artifact/519-test-errors… the workflow was still loading when an assertion about the resulting modal text was issued. Avoiding the arbitrary sleep and instead just retrying the assertion until it holds true or times out is more robust and should prevent that. Commit: 341667437ae718258a8d543c4e09d187f7f85326 https://github.com/galaxyproject/galaxy/commit/341667437ae718258a8d543c4e09… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-22 (Fri, 22 Sep 2017) Changed paths: M test/selenium_tests/test_published_histories_grid.py M test/selenium_tests/test_saved_histories.py Log Message: ----------- Fix selenium test retrying of tests in test_saved_histories. The automatic retrying of tests only runs for methods - not for the full test case (if that makes sense) - so setUp() isn't rerun. By refactoring the login action out of the setUp method and into the test function for these cases - when the test is retried the user should be logged back in again as well. Commit: 3014b1068bc4b7dc42d3f4c0754f6eed881b453f https://github.com/galaxyproject/galaxy/commit/3014b1068bc4b7dc42d3f4c0754f… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-09-22 (Fri, 22 Sep 2017) Changed paths: M test/selenium_tests/test_workflow_management.py Log Message: ----------- remove unused import Commit: 9e4259192dd705e5c1b5a21a55b46ea685caad52 https://github.com/galaxyproject/galaxy/commit/9e4259192dd705e5c1b5a21a55b4… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-09-23 (Sat, 23 Sep 2017) Changed paths: M test/galaxy_selenium/has_driver.py M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/test_history_options.py M test/selenium_tests/test_published_histories_grid.py M test/selenium_tests/test_saved_histories.py M test/selenium_tests/test_workflow_editor.py M test/selenium_tests/test_workflow_management.py Log Message: ----------- Merge pull request #4676 from jmchilton/selenium_fixes_33 Another round of small Selenium fixes. Compare: https://github.com/galaxyproject/galaxy/compare/22930eb56853...9e4259192dd7

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[galaxyproject/galaxy] 2495ce: Remove overly chatty debug statement in workflow o...
by GitHub 23 Sep '17

23 Sep '17

Branch: refs/heads/release_17.09 Home: https://github.com/galaxyproject/galaxy Commit: 2495ceae267da873813d2dc1aae145b686d18672 https://github.com/galaxyproject/galaxy/commit/2495ceae267da873813d2dc1aae1… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/jobs/actions/post.py Log Message: ----------- Remove overly chatty debug statement in workflow output cleanup -- this happens pretty often and much of the time is not a problem at all. If we have to track down any new issues with workflow output cleanup, it's easy enough to temporarily add this logging. Commit: 7896413b2b6a55ea99958504134ab6027baefbe8 https://github.com/galaxyproject/galaxy/commit/7896413b2b6a55ea99958504134a… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-23 (Sat, 23 Sep 2017) Changed paths: M lib/galaxy/jobs/actions/post.py Log Message: ----------- Merge pull request #4671 from dannon/remove_debug [17.09] Remove chatty debug statement Compare: https://github.com/galaxyproject/galaxy/compare/d1be9e6a8fa1...7896413b2b6a

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galaxy-commits September 2017