January 2018 - galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] a19596: Fix dataset-model's edit url
by GitHub 10 Jan '18

10 Jan '18

Branch: refs/heads/release_17.09 Home: https://github.com/galaxyproject/galaxy Commit: a19596e3eacf63e749352f583be8774d43795d79 https://github.com/galaxyproject/galaxy/commit/a19596e3eacf63e749352f583be8… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-01-10 (Wed, 10 Jan 2018) Changed paths: M client/galaxy/scripts/mvc/dataset/dataset-model.js Log Message: ----------- Fix dataset-model's edit url Commit: 9aabaa68594421e920ed6d1ac1d287e561453d8b https://github.com/galaxyproject/galaxy/commit/9aabaa68594421e920ed6d1ac1d2… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-01-10 (Wed, 10 Jan 2018) Changed paths: M static/maps/mvc/dataset/dataset-model.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/dataset/dataset-model.js Log Message: ----------- Build client Commit: 40f9c6bb858da82e21679281d3cc644271f53eb8 https://github.com/galaxyproject/galaxy/commit/40f9c6bb858da82e21679281d3cc… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-01-10 (Wed, 10 Jan 2018) Changed paths: M client/galaxy/scripts/mvc/dataset/dataset-model.js M static/maps/mvc/dataset/dataset-model.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/dataset/dataset-model.js Log Message: ----------- Merge pull request #5289 from dannon/dataset_edit_fix [17.09] Fix dataset edit link Compare: https://github.com/galaxyproject/galaxy/compare/087537a7ade9...40f9c6bb858d

1 0

[galaxyproject/galaxy] 15bc61: #5291 fix link to HTTP getgalaxy.org
by GitHub 10 Jan '18

10 Jan '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 15bc610cf06ee3aecd61cbb84e2de8a207809f9d https://github.com/galaxyproject/galaxy/commit/15bc610cf06ee3aecd61cbb84e2d… Author: selten <selten(a)users.noreply.github.com> Date: 2018-01-10 (Wed, 10 Jan 2018) Changed paths: M doc/source/admin/production.md Log Message: ----------- #5291 fix link to HTTP getgalaxy.org Commit: f1f6a19a0fc87107e7429f366906a914cb543c82 https://github.com/galaxyproject/galaxy/commit/f1f6a19a0fc87107e7429f366906… Author: selten <selten(a)users.noreply.github.com> Date: 2018-01-10 (Wed, 10 Jan 2018) Changed paths: M doc/source/admin/production.md Log Message: ----------- #5291 Changed text, removed Admin/GetGalaxy Commit: aa81ccf8ac1376715222243fde5566a554227d71 https://github.com/galaxyproject/galaxy/commit/aa81ccf8ac1376715222243fde55… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-01-10 (Wed, 10 Jan 2018) Changed paths: M doc/source/admin/production.md Log Message: ----------- Merge pull request #5295 from selten/dev #5291 fix link to HTTP getgalaxy.org Compare: https://github.com/galaxyproject/galaxy/compare/242bf89891e1...aa81ccf8ac13

1 0

[galaxyproject/galaxy] 3b9507: Update locale.js
by GitHub 10 Jan '18

10 Jan '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 3b950763a715d30aa28bb26cc259ed7026fc1b2c https://github.com/galaxyproject/galaxy/commit/3b950763a715d30aa28bb26cc259… Author: steven <ishenweiyan(a)qq.com> Date: 2017-12-01 (Fri, 01 Dec 2017) Changed paths: M client/galaxy/scripts/nls/zh/locale.js Log Message: ----------- Update locale.js update zh localization Commit: cd9324ab51e33b7c0ddeaf5ebeb9ca5206706801 https://github.com/galaxyproject/galaxy/commit/cd9324ab51e33b7c0ddeaf5ebeb9… Author: steven <ishenweiyan(a)qq.com> Date: 2017-12-08 (Fri, 08 Dec 2017) Changed paths: M client/galaxy/scripts/nls/zh/locale.js Log Message: ----------- Update locale.js Commit: 3a83c1392e3546d06a45b1237422548199422576 https://github.com/galaxyproject/galaxy/commit/3a83c1392e3546d06a45b1237422… Author: steven <ishenweiyan(a)qq.com> Date: 2017-12-19 (Tue, 19 Dec 2017) Changed paths: M client/galaxy/scripts/nls/zh/locale.js Log Message: ----------- Update locale.js Commit: 2b22e4ce2517b8576f34de960a7408d1dbf1a887 https://github.com/galaxyproject/galaxy/commit/2b22e4ce2517b8576f34de960a74… Author: steven <ishenweiyan(a)qq.com> Date: 2017-12-19 (Tue, 19 Dec 2017) Log Message: ----------- Add chinese support Add simplified Chinese support Commit: 6e84fef4e0041544e63f426e654b3974160cfec6 https://github.com/galaxyproject/galaxy/commit/6e84fef4e0041544e63f426e654b… Author: steven <ishenweiyan(a)qq.com> Date: 2018-01-10 (Wed, 10 Jan 2018) Changed paths: M client/galaxy/scripts/nls/zh/locale.js Log Message: ----------- Update locale.js Add tool-panel and history-panel title translation. Commit: 9c743f2b084bb53adaed832c36b1d105ba7a9334 https://github.com/galaxyproject/galaxy/commit/9c743f2b084bb53adaed832c36b1… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-01-10 (Wed, 10 Jan 2018) Changed paths: M client/galaxy/scripts/nls/zh/locale.js Log Message: ----------- Merge remote-tracking branch 'istevenshen/dev' into dev Commit: e2a662eb95bc54e546fd699d91f3ae1ce0beef5b https://github.com/galaxyproject/galaxy/commit/e2a662eb95bc54e546fd699d91f3… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-01-10 (Wed, 10 Jan 2018) Changed paths: M client/galaxy/scripts/nls/zh/locale.js Log Message: ----------- Client format Commit: 242bf89891e1f95288447cbe4079ba58fd2098b1 https://github.com/galaxyproject/galaxy/commit/242bf89891e1f95288447cbe4079… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-01-10 (Wed, 10 Jan 2018) Changed paths: M static/scripts/bundled/libs.bundled.js M static/scripts/nls/zh/locale.js Log Message: ----------- Client build. Compare: https://github.com/galaxyproject/galaxy/compare/11f434af3987...242bf89891e1

1 0

[galaxyproject/galaxy] 489f0a: Cleanup in dataset-error.js, extra escaping.
by GitHub 09 Jan '18

09 Jan '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 489f0a84df062b5fdad3835d3666232771e5b39b https://github.com/galaxyproject/galaxy/commit/489f0a84df062b5fdad3835d3666… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-01-08 (Mon, 08 Jan 2018) Changed paths: M client/galaxy/scripts/mvc/dataset/dataset-error.js Log Message: ----------- Cleanup in dataset-error.js, extra escaping. Commit: 38e725ff66bfd3e5c0bceef2a937644f8b1bc8c5 https://github.com/galaxyproject/galaxy/commit/38e725ff66bfd3e5c0bceef2a937… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-01-08 (Mon, 08 Jan 2018) Changed paths: M client/galaxy/scripts/mvc/dataset/dataset-error.js Log Message: ----------- Template formatting. Commit: 5f3e11c02c24ca96beb3342f58bcd78ea15044f7 https://github.com/galaxyproject/galaxy/commit/5f3e11c02c24ca96beb3342f58bc… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-01-08 (Mon, 08 Jan 2018) Changed paths: M client/galaxy/scripts/mvc/dataset/dataset-error.js Log Message: ----------- A few minor tweaks to page rendering on dataset error interface Commit: 24cfb6b52216ac9bfccf8eea02a7ff0344129e2f https://github.com/galaxyproject/galaxy/commit/24cfb6b52216ac9bfccf8eea02a7… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-01-08 (Mon, 08 Jan 2018) Changed paths: M static/scripts/bundled/analysis.bundled.js M static/scripts/mvc/dataset/dataset-error.js Log Message: ----------- Client build. Commit: 11f434af3987ef1982dcd64c2f1a63219038c976 https://github.com/galaxyproject/galaxy/commit/11f434af3987ef1982dcd64c2f1a… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-01-09 (Tue, 09 Jan 2018) Changed paths: M client/galaxy/scripts/mvc/dataset/dataset-error.js M static/scripts/bundled/analysis.bundled.js M static/scripts/mvc/dataset/dataset-error.js Log Message: ----------- Merge pull request #5279 from dannon/dataset-error-cleanup Dataset Error Interface Cleanup Compare: https://github.com/galaxyproject/galaxy/compare/14cb52ea9b0f...11f434af3987

1 0

[galaxyproject/galaxy] da3e48: Mark rerun_with_use_cached_job as flakey
by GitHub 09 Jan '18

09 Jan '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: da3e48faa58485a5ff097d21f79470acd3c1cf34 https://github.com/galaxyproject/galaxy/commit/da3e48faa58485a5ff097d21f794… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2018-01-09 (Tue, 09 Jan 2018) Changed paths: M test/api/test_workflows.py Log Message: ----------- Mark rerun_with_use_cached_job as flakey Sometimes it does not pick up the equivalent job that should exist. Will need to dig into this, but in the meantime we can allow the test to fail. Commit: 14cb52ea9b0f657aacfd712dcaeada9af15e0703 https://github.com/galaxyproject/galaxy/commit/14cb52ea9b0f657aacfd712dcaea… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-01-09 (Tue, 09 Jan 2018) Changed paths: M test/api/test_workflows.py Log Message: ----------- Merge pull request #5286 from mvdbeek/disable_cached_job_rerun_test Mark rerun_with_use_cached_job as flakey Compare: https://github.com/galaxyproject/galaxy/compare/00d7ec0b4237...14cb52ea9b0f

1 0

[galaxyproject/galaxy] c71ab1: Fix firefox (worked in Chrome only) sourcemaps in ...
by GitHub 08 Jan '18

08 Jan '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: c71ab1df2de57f03ce4df685abe4a6e8b656a18f https://github.com/galaxyproject/galaxy/commit/c71ab1df2de57f03ce4df685abe4… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-01-08 (Mon, 08 Jan 2018) Changed paths: M client/webpack.config.js Log Message: ----------- Fix firefox (worked in Chrome only) sourcemaps in dev mode. Commit: e694aee7a9b24a433eb651855e6ae08d20f0afba https://github.com/galaxyproject/galaxy/commit/e694aee7a9b24a433eb651855e6a… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-01-08 (Mon, 08 Jan 2018) Changed paths: M client/webpack.config.js Log Message: ----------- Formatting in webpack config. Commit: 00d7ec0b4237383c5fc38584c9419555533d9b2f https://github.com/galaxyproject/galaxy/commit/00d7ec0b4237383c5fc38584c941… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-01-08 (Mon, 08 Jan 2018) Changed paths: M client/webpack.config.js Log Message: ----------- Merge pull request #5278 from dannon/dev-sourcemap-ff-compat Fix dev sourcemap firefox compatibility Compare: https://github.com/galaxyproject/galaxy/compare/ce4b1c9bd950...00d7ec0b4237

1 0

[galaxyproject/galaxy] 1cd217: add biostar configs to the sample
by GitHub 08 Jan '18

08 Jan '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 1cd217dd14ae825b295d4000c2ba66cec9c1261b https://github.com/galaxyproject/galaxy/commit/1cd217dd14ae825b295d4000c2ba… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-01-08 (Mon, 08 Jan 2018) Changed paths: M config/galaxy.ini.sample Log Message: ----------- add biostar configs to the sample Commit: ce4b1c9bd95029df64ffec6e4dfe3f53f0fe6f53 https://github.com/galaxyproject/galaxy/commit/ce4b1c9bd95029df64ffec6e4dfe… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2018-01-08 (Mon, 08 Jan 2018) Changed paths: M config/galaxy.ini.sample Log Message: ----------- Merge pull request #5276 from martenson/biostar-config add biostar configs to the sample Compare: https://github.com/galaxyproject/galaxy/compare/d1ac0d9a56b9...ce4b1c9bd950

1 0

[galaxyproject/galaxy] d44800: Also update tool_id when switching versions in wor...
by GitHub 08 Jan '18

08 Jan '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: d448001fe6ef5bcd6c5ba763a7e5a0718c2909d4 https://github.com/galaxyproject/galaxy/commit/d448001fe6ef5bcd6c5ba763a7e5… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-12-31 (Sun, 31 Dec 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-node.js Log Message: ----------- Also update tool_id when switching versions in workflow editor Commit: cb4ef22e1b83a91eeec7d6e54942af333871d67d https://github.com/galaxyproject/galaxy/commit/cb4ef22e1b83a91eeec7d6e54942… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-12-31 (Sun, 31 Dec 2017) Changed paths: A static/maps/legacy/grid/grid-model.js.map A static/maps/legacy/grid/grid-template.js.map A static/maps/legacy/grid/grid-view.js.map A static/maps/libs/bibtexParse.js.map A static/maps/libs/jquery/jquery.complexify.js.map A static/maps/libs/vue.js.map A static/maps/mvc/history/history-item-li.js.map A static/maps/mvc/history/job-states-model.js.map A static/maps/mvc/lazy/lazy-limited.js.map A static/maps/mvc/library/library-util.js.map A static/maps/mvc/upload/upload-extension.js.map M static/maps/mvc/workflow/workflow-node.js.map A static/maps/reports/run_stats.js.map A static/maps/toolshed/groups/group-detail-view.js.map A static/maps/toolshed/groups/group-list-view.js.map A static/maps/toolshed/groups/group-listrow-view.js.map A static/maps/toolshed/groups/group-model.js.map A static/maps/toolshed/toolshed.groups.js.map A static/scripts/bundled/admin.js.map A static/scripts/bundled/adminToolshed.js.map A static/scripts/bundled/analysis.js.map A static/scripts/bundled/extended.js.map A static/scripts/bundled/library.js.map A static/scripts/bundled/libs.js.map A static/scripts/bundled/login.js.map A static/scripts/bundled/masthead.js.map A static/scripts/bundled/viz.js.map A static/scripts/bundled/workflow.js.map A static/scripts/libs/bibtexParse.js A static/scripts/libs/jquery/jquery.complexify.js A static/scripts/libs/vue.js M static/scripts/mvc/workflow/workflow-node.js Log Message: ----------- Build client Commit: 41ce472cf2a2453d54b1e5b597d72ede50ab65be https://github.com/galaxyproject/galaxy/commit/41ce472cf2a2453d54b1e5b597d7… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-01-01 (Mon, 01 Jan 2018) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-node.js A static/maps/legacy/grid/grid-model.js.map A static/maps/legacy/grid/grid-template.js.map A static/maps/legacy/grid/grid-view.js.map A static/maps/libs/bibtexParse.js.map A static/maps/libs/jquery/jquery.complexify.js.map A static/maps/libs/vue.js.map A static/maps/mvc/history/history-item-li.js.map A static/maps/mvc/history/job-states-model.js.map A static/maps/mvc/lazy/lazy-limited.js.map A static/maps/mvc/library/library-util.js.map A static/maps/mvc/upload/upload-extension.js.map M static/maps/mvc/workflow/workflow-node.js.map A static/maps/reports/run_stats.js.map A static/maps/toolshed/groups/group-detail-view.js.map A static/maps/toolshed/groups/group-list-view.js.map A static/maps/toolshed/groups/group-listrow-view.js.map A static/maps/toolshed/groups/group-model.js.map A static/maps/toolshed/toolshed.groups.js.map A static/scripts/bundled/admin.js.map A static/scripts/bundled/adminToolshed.js.map A static/scripts/bundled/analysis.js.map A static/scripts/bundled/extended.js.map A static/scripts/bundled/library.js.map A static/scripts/bundled/libs.js.map A static/scripts/bundled/login.js.map A static/scripts/bundled/masthead.js.map A static/scripts/bundled/viz.js.map A static/scripts/bundled/workflow.js.map A static/scripts/libs/bibtexParse.js A static/scripts/libs/jquery/jquery.complexify.js A static/scripts/libs/vue.js M static/scripts/mvc/workflow/workflow-node.js Log Message: ----------- Merge pull request #5249 from mvdbeek/fix_wrong_tool_id_after_switching_versions [17.09] Fix wrong tool id after switching versions Commit: 7483648b3e7ddfd5cc4d9ebfbf80a62ed741462c https://github.com/galaxyproject/galaxy/commit/7483648b3e7ddfd5cc4d9ebfbf80… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2018-01-02 (Tue, 02 Jan 2018) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Catch error when displaying broken BAM file This should fix https://github.com/galaxyproject/galaxy/issues/5252. Commit: bdbc1a680e46c3853f47489b6e3649b596ce5c95 https://github.com/galaxyproject/galaxy/commit/bdbc1a680e46c3853f47489b6e36… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-01-04 (Thu, 04 Jan 2018) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Merge pull request #5253 from mvdbeek/catch_pysam_errors_when_viewing_bam_files [17.09] Catch and display error when displaying broken BAM file Commit: 8602ecbfacd5e3f953bcd400180ee292bbf51f8b https://github.com/galaxyproject/galaxy/commit/8602ecbfacd5e3f953bcd400180e… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-01-05 (Fri, 05 Jan 2018) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-composite.js M static/maps/mvc/tool/tool-form-composite.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/tool/tool-form-composite.js Log Message: ----------- Only collect required attributes of linked steps Commit: 087537a7ade904735d864f9451eb956257890158 https://github.com/galaxyproject/galaxy/commit/087537a7ade904735d864f9451eb… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-01-05 (Fri, 05 Jan 2018) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-composite.js M static/maps/mvc/tool/tool-form-composite.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/tool/tool-form-composite.js Log Message: ----------- Merge pull request #5271 from guerler/fix_workflow_leak [17.09] Only collect required attributes of linked steps Commit: 6cecafa6f3b56f4f9987f8b9d78df0d41b843d37 https://github.com/galaxyproject/galaxy/commit/6cecafa6f3b56f4f9987f8b9d78d… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-01-08 (Mon, 08 Jan 2018) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-composite.js M client/galaxy/scripts/mvc/workflow/workflow-node.js M lib/galaxy/datatypes/binary.py Log Message: ----------- Merge remote-tracking branch 'upstream/release_17.09' into dev Commit: ac11236a0a837f6c0db9bf2ca95ba7cf96b09e21 https://github.com/galaxyproject/galaxy/commit/ac11236a0a837f6c0db9bf2ca95b… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-01-08 (Mon, 08 Jan 2018) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form.js Log Message: ----------- Client format. Commit: 11f5dabeb9f167ede53519bf554613a3c4cf8a98 https://github.com/galaxyproject/galaxy/commit/11f5dabeb9f167ede53519bf5546… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-01-08 (Mon, 08 Jan 2018) Changed paths: M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/extended.bundled.js M static/scripts/mvc/tool/tool-form-composite.js M static/scripts/mvc/workflow/workflow-node.js Log Message: ----------- Make client. Commit: 1cabbb1e9988f4b65e23402ef2136e922dd3f410 https://github.com/galaxyproject/galaxy/commit/1cabbb1e9988f4b65e23402ef213… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-01-08 (Mon, 08 Jan 2018) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-composite.js M client/galaxy/scripts/mvc/tool/tool-form.js M client/galaxy/scripts/mvc/workflow/workflow-node.js M lib/galaxy/datatypes/binary.py M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/extended.bundled.js M static/scripts/mvc/tool/tool-form-composite.js M static/scripts/mvc/workflow/workflow-node.js Log Message: ----------- Merge 17.09 -> dev. Commit: d1ac0d9a56b915f1885b44333d4a6b6d8840de7a https://github.com/galaxyproject/galaxy/commit/d1ac0d9a56b915f1885b44333d4a… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-01-08 (Mon, 08 Jan 2018) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-composite.js M client/galaxy/scripts/mvc/tool/tool-form.js M client/galaxy/scripts/mvc/workflow/workflow-node.js M lib/galaxy/datatypes/binary.py M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/extended.bundled.js M static/scripts/mvc/tool/tool-form-composite.js M static/scripts/mvc/workflow/workflow-node.js Log Message: ----------- Merge pull request #5274 from dannon/dev Merge 17.09 -> dev. Compare: https://github.com/galaxyproject/galaxy/compare/60e0b3af62f2...d1ac0d9a56b9

1 0

[galaxyproject/galaxy] 264b86: Allow sorting collection elements based on file
by GitHub 08 Jan '18

08 Jan '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 264b8680f3af1eb39c641a0b8a7392ee3b80a967 https://github.com/galaxyproject/galaxy/commit/264b8680f3af1eb39c641a0b8a73… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2018-01-08 (Mon, 08 Jan 2018) Changed paths: M lib/galaxy/tools/__init__.py M lib/galaxy/tools/sort_collection_list.xml A test-data/new_element_sort_order.txt Log Message: ----------- Allow sorting collection elements based on file Given a collection with element_identifiers: ```yml element_1 element_2 ``` we can arbitrarily re-order collection elements using a dataset that specifies the new order, e.g ``` element_2 element_1 ``` I think this nicely complements numeric and alphanumeric sorts that are already possible with this tool. Commit: 60e0b3af62f284c4df18b84633034120964dcfc6 https://github.com/galaxyproject/galaxy/commit/60e0b3af62f284c4df18b8463303… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-01-08 (Mon, 08 Jan 2018) Changed paths: M lib/galaxy/tools/__init__.py M lib/galaxy/tools/sort_collection_list.xml A test-data/new_element_sort_order.txt Log Message: ----------- Merge pull request #5273 from mvdbeek/sort_collection_from_file Allow sorting collection elements based on file Compare: https://github.com/galaxyproject/galaxy/compare/1266b691d881...60e0b3af62f2

1 0

[galaxyproject/galaxy] 8602ec: Only collect required attributes of linked steps
by GitHub 05 Jan '18

05 Jan '18

Branch: refs/heads/release_17.09 Home: https://github.com/galaxyproject/galaxy Commit: 8602ecbfacd5e3f953bcd400180ee292bbf51f8b https://github.com/galaxyproject/galaxy/commit/8602ecbfacd5e3f953bcd400180e… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-01-05 (Fri, 05 Jan 2018) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-composite.js M static/maps/mvc/tool/tool-form-composite.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/tool/tool-form-composite.js Log Message: ----------- Only collect required attributes of linked steps Commit: 087537a7ade904735d864f9451eb956257890158 https://github.com/galaxyproject/galaxy/commit/087537a7ade904735d864f9451eb… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-01-05 (Fri, 05 Jan 2018) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-composite.js M static/maps/mvc/tool/tool-form-composite.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/tool/tool-form-composite.js Log Message: ----------- Merge pull request #5271 from guerler/fix_workflow_leak [17.09] Only collect required attributes of linked steps Compare: https://github.com/galaxyproject/galaxy/compare/bdbc1a680e46...087537a7ade9

1 0