November 2018 - galaxy-commits - lists.galaxyproject.org

[galaxyproject/ansible-galaxy] 905248: Added report for current and max db version
by GitHub 09 Nov '18

09 Nov '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/ansible-galaxy Commit: 90524880307b7285c77db1285f1fce0753653ea1 https://github.com/galaxyproject/ansible-galaxy/commit/90524880307b7285c77d… Author: eslerm <eslerm(a)umn.edu> Date: 2018-11-09 (Fri, 09 Nov 2018) Changed paths: M tasks/database.yml Log Message: ----------- Added report for current and max db version Commit: 5506cd5d683e372de36a363e3da00b8eb52a09e0 https://github.com/galaxyproject/ansible-galaxy/commit/5506cd5d683e372de36a… Author: Marius van den Beek <m.vandenbeek(a)gmail.com> Date: 2018-11-09 (Fri, 09 Nov 2018) Changed paths: M tasks/database.yml Log Message: ----------- Merge pull request #35 from eslerm/database Added report for current and max database version Compare: https://github.com/galaxyproject/ansible-galaxy/compare/3853b8d5ee3a...5506… **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] 9842a3: Prevent errors when a library dataset has been pur...
by GitHub 09 Nov '18

09 Nov '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 9842a378b12b216a670e3e108bc5ab8a580cc636 https://github.com/galaxyproject/galaxy/commit/9842a378b12b216a670e3e108bc5… Author: dpryan79 <dpryan79(a)gmail.com> Date: 2018-09-27 (Thu, 27 Sep 2018) Changed paths: M lib/galaxy/model/__init__.py Log Message: ----------- Prevent errors when a library dataset has been purged. Commit: eeca6f37a3b1c406f2389a32939b62269b682561 https://github.com/galaxyproject/galaxy/commit/eeca6f37a3b1c406f2389a32939b… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-11-09 (Fri, 09 Nov 2018) Changed paths: M lib/galaxy/model/__init__.py Log Message: ----------- Merge pull request #6784 from dpryan79/purged_library_datasets Prevent errors when a library dataset has been purged from disk Compare: https://github.com/galaxyproject/galaxy/compare/346b1bbfae56...eeca6f37a3b1 **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] 6bd251: Give all model objects with an id a __repr__ that ...
by GitHub 09 Nov '18

09 Nov '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 6bd2513a35e24d9ac596eb77f66cc1f5896ec76e https://github.com/galaxyproject/galaxy/commit/6bd2513a35e24d9ac596eb77f66c… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-10-10 (Wed, 10 Oct 2018) Changed paths: M lib/galaxy/model/__init__.py Log Message: ----------- Give all model objects with an id a __repr__ that includes the id Commit: 414ce0a0eb18ad224d31136ad886079843814b66 https://github.com/galaxyproject/galaxy/commit/414ce0a0eb18ad224d31136ad886… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-10-10 (Wed, 10 Oct 2018) Changed paths: M lib/galaxy/model/__init__.py Log Message: ----------- Use model.cached_id() instead of <obj>.id as per the tip from @jmchilton. Also, include the object's id (address) as with the default repr since it indicates whether an object is a different copy from another with the same id (database). Also catch any exceptions because failing to repr a model object could be pretty bad. Commit: 346b1bbfae5674a0212f626a5b9e4bd929fac889 https://github.com/galaxyproject/galaxy/commit/346b1bbfae5674a0212f626a5b9e… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-11-09 (Fri, 09 Nov 2018) Changed paths: M lib/galaxy/model/__init__.py Log Message: ----------- Merge pull request #6757 from natefoo/repr-model-objects Give all model objects with an id a __repr__ that includes the id Compare: https://github.com/galaxyproject/galaxy/compare/fdb571f57dad...346b1bbfae56 **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] e8dbb8: Upgrade nodeenv's nodejs to 10.13.0 LTS, now that ...
by GitHub 09 Nov '18

09 Nov '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: e8dbb8c58ab78a75044b5a5ebdd9f8dfb442aeac https://github.com/galaxyproject/galaxy/commit/e8dbb8c58ab78a75044b5a5ebdd9… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-11-08 (Thu, 08 Nov 2018) Changed paths: M scripts/common_startup.sh Log Message: ----------- Upgrade nodeenv's nodejs to 10.13.0 LTS, now that the client build works fine with v10 Commit: fdb571f57dadb3ab23a61cc369f766ef1e16fe12 https://github.com/galaxyproject/galaxy/commit/fdb571f57dadb3ab23a61cc369f7… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-11-09 (Fri, 09 Nov 2018) Changed paths: M scripts/common_startup.sh Log Message: ----------- Merge pull request #6991 from dannon/node_lts_upgrade Upgrade nodeenv's nodejs to 10.13.0 LTS Compare: https://github.com/galaxyproject/galaxy/compare/4e8922298010...fdb571f57dad **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] 8c8261: Refactor cloud "upload">"get" api.
by GitHub 09 Nov '18

09 Nov '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 8c826145d921b72731e611ce1b539372c477a368 https://github.com/galaxyproject/galaxy/commit/8c826145d921b72731e611ce1b53… Author: vahid <jalili.vahid(a)gmail.com> Date: 2018-10-18 (Thu, 18 Oct 2018) Changed paths: M lib/galaxy/webapps/galaxy/api/cloud.py M lib/galaxy/webapps/galaxy/buildapp.py Log Message: ----------- Refactor cloud "upload">"get" api. Commit: 6fc3aa35e8e7df9a4c2423b4e76bf90704f66559 https://github.com/galaxyproject/galaxy/commit/6fc3aa35e8e7df9a4c2423b4e76b… Author: vahid <jalili.vahid(a)gmail.com> Date: 2018-10-18 (Thu, 18 Oct 2018) Changed paths: M lib/galaxy/managers/cloud.py M lib/galaxy/webapps/galaxy/api/cloud.py Log Message: ----------- Refactor cloud "upload">"get" in cloud manager. Commit: 74d1c1fcf809e940bbe9952e29d68f27f3f5af56 https://github.com/galaxyproject/galaxy/commit/74d1c1fcf809e940bbe9952e29d6… Author: vahid <jalili.vahid(a)gmail.com> Date: 2018-10-18 (Thu, 18 Oct 2018) Changed paths: M lib/galaxy/managers/cloud.py M lib/galaxy/webapps/galaxy/api/cloud.py Log Message: ----------- Update docstring following "upload">"get" refactoring. Commit: 4e8922298010deee8879862200989de1902aff48 https://github.com/galaxyproject/galaxy/commit/4e8922298010deee887986220098… Author: Dannon <dannon.baker(a)gmail.com> Date: 2018-11-09 (Fri, 09 Nov 2018) Changed paths: M lib/galaxy/managers/cloud.py M lib/galaxy/webapps/galaxy/api/cloud.py M lib/galaxy/webapps/galaxy/buildapp.py Log Message: ----------- Merge pull request #6899 from VJalili/refactor_cloud_upload Refactor cloud "Upload" > "Get" Compare: https://github.com/galaxyproject/galaxy/compare/a882ccc88b1b...4e8922298010 **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] 840e76: Use card styles
by GitHub 09 Nov '18

09 Nov '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 840e760877c1f232603695d9c9099a8a309957c0 https://github.com/galaxyproject/galaxy/commit/840e760877c1f232603695d9c909… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-11-07 (Wed, 07 Nov 2018) Changed paths: M client/galaxy/style/scss/base.scss Log Message: ----------- Use card styles Commit: 58a1b4589250866d2de6ffdd2213232cb0d7c9cb https://github.com/galaxyproject/galaxy/commit/58a1b4589250866d2de6ffdd2213… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-11-07 (Wed, 07 Nov 2018) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-connector.js M client/galaxy/style/scss/base.scss Log Message: ----------- Style revision workflow editor Commit: 2ef314ccd0e10d88ce1f4d1d52220c5cc5c51bc2 https://github.com/galaxyproject/galaxy/commit/2ef314ccd0e10d88ce1f4d1d5222… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-11-07 (Wed, 07 Nov 2018) Changed paths: R client/galaxy/images/workflow_circle_drag.png R client/galaxy/images/workflow_circle_green.png R client/galaxy/images/workflow_circle_open.png M client/galaxy/scripts/mvc/workflow/workflow-connector.js M client/galaxy/scripts/mvc/workflow/workflow-view-terminals.js M client/galaxy/style/scss/base.scss Log Message: ----------- Remove legacy png files for workflow editor Commit: 656433f42802a92ce0fae086d7863b66ac8c4c12 https://github.com/galaxyproject/galaxy/commit/656433f42802a92ce0fae086d786… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-11-07 (Wed, 07 Nov 2018) Changed paths: R client/galaxy/images/fugue/asterisk-small-outline.png R client/galaxy/images/fugue/asterisk-small-yellow.png R client/galaxy/images/fugue/asterisk-small.png M client/galaxy/scripts/mvc/workflow/workflow-manager.js M client/galaxy/scripts/mvc/workflow/workflow-view-data.js M client/galaxy/style/scss/base.scss Log Message: ----------- Replace asterisk png for marked terminal marking with fontawesome icon Commit: ba2dc44d9db3e9a0881c65e2358cb233c6683a8d https://github.com/galaxyproject/galaxy/commit/ba2dc44d9db3e9a0881c65e2358c… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-11-07 (Wed, 07 Nov 2018) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-view-terminals.js M client/galaxy/style/scss/base.scss Log Message: ----------- Use icon instead of i as tag for terminal icons Commit: 64da2ca1f4794befc7ab8634fac63b6b393936b3 https://github.com/galaxyproject/galaxy/commit/64da2ca1f4794befc7ab8634fac6… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-11-07 (Wed, 07 Nov 2018) Changed paths: M client/galaxy/style/scss/base.scss Log Message: ----------- Remove fixed icon height Commit: 9d559753af9c756e90154c11b6c286bbeb593077 https://github.com/galaxyproject/galaxy/commit/9d559753af9c756e90154c11b6c2… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-11-07 (Wed, 07 Nov 2018) Changed paths: M client/galaxy/style/scss/base.scss M client/galaxy/style/scss/library.scss M client/galaxy/style/scss/list-item.scss M client/galaxy/style/scss/ui/icon-btn.scss Log Message: ----------- Replace custom maroon highlighting by brand color Commit: a61017dbc70479d73f6ca944f7f2b1ab793e3df3 https://github.com/galaxyproject/galaxy/commit/a61017dbc70479d73f6ca944f7f2… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-11-07 (Wed, 07 Nov 2018) Changed paths: M client/galaxy/style/scss/base.scss Log Message: ----------- Use panel color for module header backgrounds Commit: fbf514d2a022a02e3f1cc763451981ff6f73ddb9 https://github.com/galaxyproject/galaxy/commit/fbf514d2a022a02e3f1cc7634519… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-11-07 (Wed, 07 Nov 2018) Changed paths: M client/galaxy/style/scss/base.scss M client/galaxy/style/scss/theme/blue.scss Log Message: ----------- Add editor background color to theme file Commit: 5506acc2f709954aa64a51b85912b8a90e33bfd2 https://github.com/galaxyproject/galaxy/commit/5506acc2f709954aa64a51b85912… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-11-07 (Wed, 07 Nov 2018) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-canvas.js M client/galaxy/scripts/mvc/workflow/workflow-view.js M client/galaxy/style/scss/base.scss M client/galaxy/style/scss/theme/blue.scss M templates/webapps/galaxy/workflow/editor.mako Log Message: ----------- Revise workflow editor overview panel Commit: dc9c34bef3487e899d5cbeeb7afa1109618a0c64 https://github.com/galaxyproject/galaxy/commit/dc9c34bef3487e899d5cbeeb7afa… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-11-07 (Wed, 07 Nov 2018) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-manager.js M client/galaxy/scripts/mvc/workflow/workflow-view-data.js M client/galaxy/scripts/mvc/workflow/workflow-view-terminals.js M client/galaxy/style/scss/base.scss Log Message: ----------- Revise connector deletion option, remove from body and move to node, improve css specificity Commit: 6a9437b5c39d3ab554885c4cfe5f2cb926dfe6e3 https://github.com/galaxyproject/galaxy/commit/6a9437b5c39d3ab554885c4cfe5f… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-11-07 (Wed, 07 Nov 2018) Changed paths: M client/galaxy/style/scss/base.scss Log Message: ----------- Remove unused z-index, previously used for global dom node features Commit: 3379d3e98116f9904f72076db4c46beb1ae614e1 https://github.com/galaxyproject/galaxy/commit/3379d3e98116f9904f72076db4c4… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-11-07 (Wed, 07 Nov 2018) Changed paths: M client/galaxy/scripts/layout/panel.js M client/galaxy/style/scss/base.scss M templates/webapps/galaxy/workflow/editor.mako Log Message: ----------- Move style spec for panel buttons from mako to scss file, revise editor workflow title Commit: 302a16da00d2c3c31a07160bbfe8d94552bce0a4 https://github.com/galaxyproject/galaxy/commit/302a16da00d2c3c31a07160bbfe8… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-11-08 (Thu, 08 Nov 2018) Changed paths: M client/galaxy/scripts/qunit/tests/workflow_editor_tests.js Log Message: ----------- Fix qunit test color Commit: e6faaa427e2a9f01540429d949d8b978961a09bc https://github.com/galaxyproject/galaxy/commit/e6faaa427e2a9f01540429d949d8… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-11-08 (Thu, 08 Nov 2018) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-view-terminals.js Log Message: ----------- Remove hard-coded style attribute from drag terminal Commit: 8ea6fff8d82ad230689cf2fd47e39c8e9b158b47 https://github.com/galaxyproject/galaxy/commit/8ea6fff8d82ad230689cf2fd47e3… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-11-08 (Thu, 08 Nov 2018) Changed paths: M test/galaxy_selenium/navigation.yml Log Message: ----------- Fix selenium tests Commit: 99ca7939acec122a252c15733ff0da18814f880b https://github.com/galaxyproject/galaxy/commit/99ca7939acec122a252c15733ff0… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-11-08 (Thu, 08 Nov 2018) Changed paths: M client/galaxy/style/scss/base.scss Log Message: ----------- Improve delete option alignment Commit: c95cc50282873761f83ae930bcb3f652922a690a https://github.com/galaxyproject/galaxy/commit/c95cc50282873761f83ae930bcb3… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-11-09 (Fri, 09 Nov 2018) Changed paths: M .ci/jenkins/api/run_tests.sh M .ci/jenkins/framework/run_tests.sh M .ci/jenkins/integration/run_tests.sh M .ci/jenkins/main-tools/run_tests.sh M .ci/jenkins/selenium/run_tests.sh M .ci/jenkins/toolshed/run_tests.sh M client/galaxy/scripts/apps/extended.js M client/galaxy/scripts/galaxy.pages.js M client/galaxy/scripts/libs/jquery.custom.js R client/galaxy/scripts/libs/jquery/jstorage.js M client/galaxy/scripts/mvc/workflow/workflow-view.js M client/galaxy/scripts/qunit/test-app.js M client/galaxy/scripts/utils/metrics-logger.js M client/package.json M client/webpack.config.js M client/yarn.lock M config/plugins/visualizations/common/templates/chart_entry_point.mako M doc/schema_template.md M doc/source/admin/jobs.md M lib/galaxy/datatypes/text.py M lib/galaxy/tools/data_manager/manager.py M lib/galaxy/tools/xsd/galaxy.xsd M lib/galaxy/webapps/galaxy/controllers/history.py M templates/admin/tool_shed_repository/manage_repository.mako M templates/admin/tool_shed_repository/reselect_tool_panel_section.mako M templates/admin/tool_shed_repository/select_tool_panel_section.mako M templates/webapps/tool_shed/repository/common.mako M templates/webapps/tool_shed/repository/manage_repository.mako M templates/webapps/tool_shed/repository/preview_tools_in_changeset.mako M templates/webapps/tool_shed/repository/view_repository.mako Log Message: ----------- Merge branch 'dev' into workflow_style_2 Commit: a882ccc88b1b79cd78550161b40507a9da1b2075 https://github.com/galaxyproject/galaxy/commit/a882ccc88b1b79cd78550161b405… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-11-09 (Fri, 09 Nov 2018) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-view-data.js M client/galaxy/scripts/mvc/workflow/workflow-view-terminals.js M client/galaxy/style/scss/base.scss Log Message: ----------- Client format Compare: https://github.com/galaxyproject/galaxy/compare/588dbfaa68d5...a882ccc88b1b **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] eb8916: Trim whitespace from data manager conf paths
by GitHub 09 Nov '18

09 Nov '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: eb8916e93fd690631fcaf588a1d17ecf2f3d67db https://github.com/galaxyproject/galaxy/commit/eb8916e93fd690631fcaf588a1d1… Author: pvanheus <pvh(a)sanbi.ac.za> Date: 2018-09-08 (Sat, 08 Sep 2018) Changed paths: M lib/galaxy/tools/data_manager/manager.py Log Message: ----------- Trim whitespace from data manager conf paths The templates used for `<target>` and `<value_translation>` tags should be `.strip()` to make it easier to write sophisticated templates that still yield a single line. Commit: 588dbfaa68d5a39cd7a153b785f0dcb097bb39af https://github.com/galaxyproject/galaxy/commit/588dbfaa68d5a39cd7a153b785f0… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-11-09 (Fri, 09 Nov 2018) Changed paths: M lib/galaxy/tools/data_manager/manager.py Log Message: ----------- Merge pull request #6682 from pvanheus/patch-5 Trim whitespace from data manager conf paths Compare: https://github.com/galaxyproject/galaxy/compare/fc87b19a1cdd...588dbfaa68d5 **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] 4add47: Replaced jStorage with store
by GitHub 09 Nov '18

09 Nov '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 4add47b2642a9719351e417e016945eadd3cfd27 https://github.com/galaxyproject/galaxy/commit/4add47b2642a9719351e417e0169… Author: Mason <nerdinacan(a)gmail.com> Date: 2018-11-08 (Thu, 08 Nov 2018) Changed paths: M client/galaxy/scripts/apps/extended.js M client/galaxy/scripts/galaxy.pages.js M client/galaxy/scripts/libs/jquery.custom.js R client/galaxy/scripts/libs/jquery/jstorage.js M client/galaxy/scripts/mvc/workflow/workflow-view.js M client/galaxy/scripts/qunit/test-app.js M client/galaxy/scripts/utils/metrics-logger.js M client/package.json M client/webpack.config.js M client/yarn.lock M templates/admin/tool_shed_repository/manage_repository.mako M templates/admin/tool_shed_repository/reselect_tool_panel_section.mako M templates/admin/tool_shed_repository/select_tool_panel_section.mako M templates/webapps/tool_shed/repository/common.mako M templates/webapps/tool_shed/repository/manage_repository.mako M templates/webapps/tool_shed/repository/preview_tools_in_changeset.mako M templates/webapps/tool_shed/repository/view_repository.mako Log Message: ----------- Replaced jStorage with store Commit: fc66e88642d0d1c00c24b4507a317ca3c65dd348 https://github.com/galaxyproject/galaxy/commit/fc66e88642d0d1c00c24b4507a31… Author: Mason <nerdinacan(a)gmail.com> Date: 2018-11-09 (Fri, 09 Nov 2018) Changed paths: M client/galaxy/scripts/libs/jquery.custom.js Log Message: ----------- Update jquery.custom.js Committing just to make the tests run again. Commit: f8d50824acf2a8f6cf6bd324f5607ebb99379629 https://github.com/galaxyproject/galaxy/commit/f8d50824acf2a8f6cf6bd324f560… Author: Mason <nerdinacan(a)gmail.com> Date: 2018-11-09 (Fri, 09 Nov 2018) Changed paths: M templates/webapps/tool_shed/repository/common.mako Log Message: ----------- Removed debugger statement Commit: a64fa50c760484d5710588c89600a4597caba10c https://github.com/galaxyproject/galaxy/commit/a64fa50c760484d5710588c89600… Author: Mason <nerdinacan(a)gmail.com> Date: 2018-11-09 (Fri, 09 Nov 2018) Changed paths: M client/galaxy/scripts/libs/jquery.custom.js Log Message: ----------- Merge branch 'replace_jstorage' of https://github.com/Nerdinacan/galaxy into replace_jstorage Commit: fc87b19a1cdd14965ed85fe750b17698bea30ebd https://github.com/galaxyproject/galaxy/commit/fc87b19a1cdd14965ed85fe750b1… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-11-09 (Fri, 09 Nov 2018) Changed paths: M client/galaxy/scripts/apps/extended.js M client/galaxy/scripts/galaxy.pages.js M client/galaxy/scripts/libs/jquery.custom.js R client/galaxy/scripts/libs/jquery/jstorage.js M client/galaxy/scripts/mvc/workflow/workflow-view.js M client/galaxy/scripts/qunit/test-app.js M client/galaxy/scripts/utils/metrics-logger.js M client/package.json M client/webpack.config.js M client/yarn.lock M templates/admin/tool_shed_repository/manage_repository.mako M templates/admin/tool_shed_repository/reselect_tool_panel_section.mako M templates/admin/tool_shed_repository/select_tool_panel_section.mako M templates/webapps/tool_shed/repository/common.mako M templates/webapps/tool_shed/repository/manage_repository.mako M templates/webapps/tool_shed/repository/preview_tools_in_changeset.mako M templates/webapps/tool_shed/repository/view_repository.mako Log Message: ----------- Merge pull request #6994 from Nerdinacan/replace_jstorage Replaced jStorage with store Compare: https://github.com/galaxyproject/galaxy/compare/46126cda0990...fc87b19a1cdd **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] 03794c: Fix broken links on Job Configuration page
by GitHub 08 Nov '18

08 Nov '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 03794ce21aabe40bc942eed7ef3442ec9b0960b6 https://github.com/galaxyproject/galaxy/commit/03794ce21aabe40bc942eed7ef34… Author: Sergey Golitsynskiy <sgolitsynskiy(a)gmail.com> Date: 2018-11-08 (Thu, 08 Nov 2018) Changed paths: M doc/source/admin/jobs.md Log Message: ----------- Fix broken links on Job Configuration page Commit: 46126cda099095c70079f3f297201f01e1350df1 https://github.com/galaxyproject/galaxy/commit/46126cda099095c70079f3f29720… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-11-08 (Thu, 08 Nov 2018) Changed paths: M doc/source/admin/jobs.md Log Message: ----------- Merge pull request #6992 from ic4f/dev Fix broken links on Job Configuration page (documentation) Compare: https://github.com/galaxyproject/galaxy/compare/7966ca5a95d5...46126cda0990 **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] ebb6e7: Don't mount external /tmp for tests.
by GitHub 08 Nov '18

08 Nov '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: ebb6e78f0d86555be0b53d635f076cae3d945eb2 https://github.com/galaxyproject/galaxy/commit/ebb6e78f0d86555be0b53d635f07… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-11-08 (Thu, 08 Nov 2018) Changed paths: M .ci/jenkins/api/run_tests.sh M .ci/jenkins/framework/run_tests.sh M .ci/jenkins/integration/run_tests.sh M .ci/jenkins/main-tools/run_tests.sh M .ci/jenkins/selenium/run_tests.sh M .ci/jenkins/toolshed/run_tests.sh Log Message: ----------- Don't mount external /tmp for tests. Nate wants the file busy errors back ;). Commit: 7966ca5a95d57ee986621bd180e3ff8858e1624c https://github.com/galaxyproject/galaxy/commit/7966ca5a95d57ee986621bd180e3… Author: Marius van den Beek <m.vandenbeek(a)gmail.com> Date: 2018-11-08 (Thu, 08 Nov 2018) Changed paths: M .ci/jenkins/api/run_tests.sh M .ci/jenkins/framework/run_tests.sh M .ci/jenkins/integration/run_tests.sh M .ci/jenkins/main-tools/run_tests.sh M .ci/jenkins/selenium/run_tests.sh M .ci/jenkins/toolshed/run_tests.sh Log Message: ----------- Merge pull request #6990 from jmchilton/skip_mounting_external_tmp_in_ci_tests Don't mount external /tmp for tests. Compare: https://github.com/galaxyproject/galaxy/compare/f9a84b0ffe36...7966ca5a95d5 **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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