February 2018 - galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] db0691: fix #5484
by GitHub 08 Feb '18

08 Feb '18

Branch: refs/heads/release_18.01 Home: https://github.com/galaxyproject/galaxy Commit: db069198af913238515faf6077521a2a2754631f https://github.com/galaxyproject/galaxy/commit/db069198af913238515faf607752… Author: Jelle Scholtalbers <j.scholtalbers(a)gmail.com> Date: 2018-02-08 (Thu, 08 Feb 2018) Changed paths: M lib/galaxy/jobs/actions/post.py Log Message: ----------- fix #5484 Commit: e9ed97f533c00a66db4f6aee81429f61e74835cb https://github.com/galaxyproject/galaxy/commit/e9ed97f533c00a66db4f6aee8142… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-02-08 (Thu, 08 Feb 2018) Changed paths: M lib/galaxy/jobs/actions/post.py Log Message: ----------- Merge pull request #5485 from scholtalbers/fix/#5484_rename_post_actions [18.01] Fix #5484 Compare: https://github.com/galaxyproject/galaxy/compare/62540a97472e...e9ed97f533c0

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[galaxyproject/galaxy] 45ab11: Initial work towards slow request logging into sen...
by GitHub 07 Feb '18

07 Feb '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 45ab11cca78809a0bc779ddeff411f0ae2bbf311 https://github.com/galaxyproject/galaxy/commit/45ab11cca78809a0bc779ddeff41… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-02-07 (Wed, 07 Feb 2018) Changed paths: M lib/galaxy/web/framework/middleware/sentry.py Log Message: ----------- Initial work towards slow request logging into sentry Commit: db45db89b396b0f70f600f078aef1f833b760745 https://github.com/galaxyproject/galaxy/commit/db45db89b396b0f70f600f078aef… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-02-07 (Wed, 07 Feb 2018) Changed paths: M config/galaxy.yml.sample M lib/galaxy/web/framework/middleware/sentry.py M lib/galaxy/webapps/galaxy/buildapp.py Log Message: ----------- Make sloreq_threshold configurable Commit: d1f120108735cdf15b6c782d5bb2f66ffce274c4 https://github.com/galaxyproject/galaxy/commit/d1f120108735cdf15b6c782d5bb2… Author: E. Rasche <hxr(a)hx42.org> Date: 2018-02-07 (Wed, 07 Feb 2018) Changed paths: M config/galaxy.yml.sample M lib/galaxy/web/framework/middleware/sentry.py M lib/galaxy/webapps/galaxy/buildapp.py Log Message: ----------- Merge pull request #5479 from dannon/slow_request_timing_sentry Slow request timing in sentry Compare: https://github.com/galaxyproject/galaxy/compare/65e2e0b48f59...d1f120108735

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[galaxyproject/usegalaxy-playbook] 760819: Update Test/Main
by GitHub 07 Feb '18

07 Feb '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 760819681cda856801eeed1220a33d1bdc20466b https://github.com/galaxyproject/usegalaxy-playbook/commit/760819681cda8568… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-02-07 (Wed, 07 Feb 2018) Changed paths: M env/main/files/galaxy/galaxy_version.yml M env/test/files/galaxy/galaxy_version.yml Log Message: ----------- Update Test/Main

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[galaxyproject/galaxy] 2f020e: Fix tool stdio level parsing for OOM level.
by GitHub 07 Feb '18

07 Feb '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 2f020ef9441d3eec8f0d517fe9f3412df1bfb8d5 https://github.com/galaxyproject/galaxy/commit/2f020ef9441d3eec8f0d517fe9f3… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-02-05 (Mon, 05 Feb 2018) Changed paths: M lib/galaxy/tools/parser/xml.py Log Message: ----------- Fix tool stdio level parsing for OOM level. Backend was enhanced to allow this in #5196 and a new entry point to setting exit code for such exit conditions but the custom parsing wasn't updated to allow it. Thanks to @nsoranzo for the catch. Commit: d537b2ac6033d831e41e1db0412fdd86d7ad9b4e https://github.com/galaxyproject/galaxy/commit/d537b2ac6033d831e41e1db0412f… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-02-05 (Mon, 05 Feb 2018) Changed paths: A static/maps/admin.toolshed.js.map A static/maps/galaxy.interactive_environments.js.map A static/maps/galaxy.js.map A static/maps/galaxy.library.js.map A static/maps/galaxy.pages.js.map A static/maps/i18n.js.map A static/maps/layout/generic-nav-view.js.map A static/maps/layout/masthead.js.map A static/maps/layout/menu.js.map A static/maps/layout/modal.js.map A static/maps/layout/page.js.map A static/maps/layout/panel.js.map A static/maps/layout/router.js.map A static/maps/layout/scratchbook.js.map A static/maps/legacy/grid/grid-model.js.map A static/maps/legacy/grid/grid-template.js.map A static/maps/legacy/grid/grid-view.js.map A static/maps/mvc/annotation.js.map A static/maps/mvc/base-mvc.js.map A static/maps/mvc/base/controlled-fetch-collection.js.map A static/maps/mvc/collection/base-creator.js.map A static/maps/mvc/collection/collection-li-edit.js.map A static/maps/mvc/collection/collection-li.js.map A static/maps/mvc/collection/collection-model.js.map A static/maps/mvc/collection/collection-view-edit.js.map A static/maps/mvc/collection/collection-view.js.map A static/maps/mvc/collection/list-collection-creator.js.map A static/maps/mvc/collection/list-of-pairs-collection-creator.js.map A static/maps/mvc/collection/pair-collection-creator.js.map A static/maps/mvc/dataset/data.js.map A static/maps/mvc/dataset/dataset-choice.js.map A static/maps/mvc/dataset/dataset-edit-attributes.js.map A static/maps/mvc/dataset/dataset-error.js.map A static/maps/mvc/dataset/dataset-li-edit.js.map A static/maps/mvc/dataset/dataset-li.js.map A static/maps/mvc/dataset/dataset-list.js.map A static/maps/mvc/dataset/dataset-model.js.map A static/maps/mvc/dataset/states.js.map A static/maps/mvc/form/form-data.js.map A static/maps/mvc/form/form-input.js.map A static/maps/mvc/form/form-parameters.js.map A static/maps/mvc/form/form-repeat.js.map A static/maps/mvc/form/form-section.js.map A static/maps/mvc/form/form-view.js.map A static/maps/mvc/form/form-wrapper.js.map A static/maps/mvc/grid/grid-model.js.map A static/maps/mvc/grid/grid-shared.js.map A static/maps/mvc/grid/grid-template.js.map A static/maps/mvc/grid/grid-view.js.map A static/maps/mvc/history/copy-dialog.js.map A static/maps/mvc/history/hda-li-edit.js.map A static/maps/mvc/history/hda-li.js.map A static/maps/mvc/history/hda-model.js.map A static/maps/mvc/history/hdca-li-edit.js.map A static/maps/mvc/history/hdca-li.js.map A static/maps/mvc/history/hdca-model.js.map A static/maps/mvc/history/history-content-model.js.map A static/maps/mvc/history/history-contents.js.map A static/maps/mvc/history/history-item-li.js.map A static/maps/mvc/history/history-list.js.map A static/maps/mvc/history/history-model.js.map A static/maps/mvc/history/history-preferences.js.map A static/maps/mvc/history/history-structure-view.js.map A static/maps/mvc/history/history-view-annotated.js.map A static/maps/mvc/history/history-view-edit-current.js.map A static/maps/mvc/history/history-view-edit.js.map A static/maps/mvc/history/history-view.js.map A static/maps/mvc/history/job-dag.js.map A static/maps/mvc/history/job-states-model.js.map A static/maps/mvc/history/multi-panel.js.map A static/maps/mvc/history/options-menu.js.map A static/maps/mvc/job/job-li.js.map A static/maps/mvc/job/job-model.js.map A static/maps/mvc/job/job-params.js.map A static/maps/mvc/lazy/lazy-limited.js.map A static/maps/mvc/library/library-dataset-view.js.map A static/maps/mvc/library/library-folder-view.js.map A static/maps/mvc/library/library-folderlist-view.js.map A static/maps/mvc/library/library-folderrow-view.js.map A static/maps/mvc/library/library-foldertoolbar-view.js.map A static/maps/mvc/library/library-library-view.js.map A static/maps/mvc/library/library-librarylist-view.js.map A static/maps/mvc/library/library-libraryrow-view.js.map A static/maps/mvc/library/library-librarytoolbar-view.js.map A static/maps/mvc/library/library-model.js.map A static/maps/mvc/library/library-util.js.map A static/maps/mvc/list/list-item.js.map A static/maps/mvc/list/list-view.js.map A static/maps/mvc/tag.js.map A static/maps/mvc/tool/tool-form-base.js.map A static/maps/mvc/tool/tool-form-composite.js.map A static/maps/mvc/tool/tool-form.js.map A static/maps/mvc/tool/tool-genomespace.js.map A static/maps/mvc/tool/tools.js.map A static/maps/mvc/toolshed/categories-view.js.map A static/maps/mvc/toolshed/repo-queue-view.js.map A static/maps/mvc/toolshed/repo-status-view.js.map A static/maps/mvc/toolshed/repositories-view.js.map A static/maps/mvc/toolshed/repository-queue-view.js.map A static/maps/mvc/toolshed/repository-view.js.map A static/maps/mvc/toolshed/shed-list-view.js.map A static/maps/mvc/toolshed/toolshed-model.js.map A static/maps/mvc/toolshed/util.js.map A static/maps/mvc/toolshed/workflows-view.js.map A static/maps/mvc/tours.js.map A static/maps/mvc/ui/error-modal.js.map A static/maps/mvc/ui/icon-button.js.map A static/maps/mvc/ui/popup-menu.js.map A static/maps/mvc/ui/ui-buttons.js.map A static/maps/mvc/ui/ui-color-picker.js.map A static/maps/mvc/ui/ui-drilldown.js.map A static/maps/mvc/ui/ui-frames.js.map A static/maps/mvc/ui/ui-list.js.map A static/maps/mvc/ui/ui-misc.js.map A static/maps/mvc/ui/ui-modal.js.map A static/maps/mvc/ui/ui-options.js.map A static/maps/mvc/ui/ui-popover.js.map A static/maps/mvc/ui/ui-portlet.js.map A static/maps/mvc/ui/ui-select-content.js.map A static/maps/mvc/ui/ui-select-default.js.map A static/maps/mvc/ui/ui-select-ftp.js.map A static/maps/mvc/ui/ui-select-genomespace.js.map A static/maps/mvc/ui/ui-select-library.js.map A static/maps/mvc/ui/ui-select.js.map A static/maps/mvc/ui/ui-slider.js.map A static/maps/mvc/ui/ui-table.js.map A static/maps/mvc/ui/ui-tabs.js.map A static/maps/mvc/ui/ui-thumbnails.js.map A static/maps/mvc/upload/collection/collection-row.js.map A static/maps/mvc/upload/collection/collection-view.js.map A static/maps/mvc/upload/composite/composite-row.js.map A static/maps/mvc/upload/composite/composite-view.js.map A static/maps/mvc/upload/default/default-row.js.map A static/maps/mvc/upload/default/default-view.js.map A static/maps/mvc/upload/upload-button.js.map A static/maps/mvc/upload/upload-extension.js.map A static/maps/mvc/upload/upload-ftp.js.map A static/maps/mvc/upload/upload-model.js.map A static/maps/mvc/upload/upload-settings.js.map A static/maps/mvc/upload/upload-view.js.map A static/maps/mvc/user/user-custom-builds.js.map A static/maps/mvc/user/user-model.js.map A static/maps/mvc/user/user-preferences.js.map A static/maps/mvc/user/user-quotameter.js.map A static/maps/mvc/visualization/visualization-model.js.map A static/maps/mvc/webhooks.js.map A static/maps/mvc/workflow/workflow-canvas.js.map A static/maps/mvc/workflow/workflow-connector.js.map A static/maps/mvc/workflow/workflow-forms.js.map A static/maps/mvc/workflow/workflow-icons.js.map A static/maps/mvc/workflow/workflow-manager.js.map A static/maps/mvc/workflow/workflow-model.js.map A static/maps/mvc/workflow/workflow-node.js.map A static/maps/mvc/workflow/workflow-terminals.js.map A static/maps/mvc/workflow/workflow-view-data.js.map A static/maps/mvc/workflow/workflow-view-node.js.map A static/maps/mvc/workflow/workflow-view-terminals.js.map A static/maps/mvc/workflow/workflow-view.js.map A static/maps/mvc/workflow/workflow.js.map A static/maps/nls/de/locale.js.map A static/maps/nls/es/locale.js.map A static/maps/nls/fr/locale.js.map A static/maps/nls/ja/locale.js.map A static/maps/nls/locale.js.map A static/maps/nls/zh/locale.js.map A static/maps/onload.js.map A static/maps/polyfills.js.map A static/maps/reports/run_stats.js.map A static/maps/toolshed/groups/group-detail-view.js.map A static/maps/toolshed/groups/group-list-view.js.map A static/maps/toolshed/groups/group-listrow-view.js.map A static/maps/toolshed/groups/group-model.js.map A static/maps/toolshed/toolshed.groups.js.map A static/maps/ui/autocom_tagging.js.map A static/maps/ui/editable-text.js.map A static/maps/ui/fa-icon-button.js.map A static/maps/ui/filter-control.js.map A static/maps/ui/hoverhighlight.js.map A static/maps/ui/loading-indicator.js.map A static/maps/ui/mode-button.js.map A static/maps/ui/pagination.js.map A static/maps/ui/peek-column-selector.js.map A static/maps/ui/popupmenu.js.map A static/maps/ui/scroll-panel.js.map A static/maps/ui/search-input.js.map A static/maps/utils/add-logging.js.map A static/maps/utils/ajax-queue.js.map A static/maps/utils/async-save-text.js.map A static/maps/utils/config.js.map A static/maps/utils/deferred.js.map A static/maps/utils/graph.js.map A static/maps/utils/levenshtein.js.map A static/maps/utils/localization.js.map A static/maps/utils/metrics-logger.js.map A static/maps/utils/natural-sort.js.map A static/maps/utils/query-string-parsing.js.map A static/maps/utils/uploadbox.js.map A static/maps/utils/utils.js.map A static/maps/viz/bbi-data-manager.js.map A static/maps/viz/circster.js.map A static/maps/viz/phyloviz.js.map A static/maps/viz/sweepster.js.map A static/maps/viz/trackster.js.map A static/maps/viz/trackster/filters.js.map A static/maps/viz/trackster/painters.js.map A static/maps/viz/trackster/slotting.js.map A static/maps/viz/trackster/tracks.js.map A static/maps/viz/trackster/util.js.map A static/maps/viz/visualization.js.map A static/maps/viz/viz_views.js.map M static/scripts/admin.toolshed.js M static/scripts/bundled/admin.bundled.js A static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js A static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/extended.bundled.js A static/scripts/bundled/extended.bundled.js.map M static/scripts/bundled/libs.bundled.js A static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js A static/scripts/bundled/login.bundled.js.map M static/scripts/galaxy.interactive_environments.js M static/scripts/galaxy.js M static/scripts/galaxy.library.js M static/scripts/galaxy.pages.js M static/scripts/i18n.js M static/scripts/layout/generic-nav-view.js M static/scripts/layout/masthead.js M static/scripts/layout/menu.js M static/scripts/layout/modal.js M static/scripts/layout/page.js M static/scripts/layout/panel.js M static/scripts/layout/router.js M static/scripts/layout/scratchbook.js M static/scripts/legacy/grid/grid-model.js M static/scripts/legacy/grid/grid-template.js M static/scripts/legacy/grid/grid-view.js M static/scripts/mvc/annotation.js M static/scripts/mvc/base-mvc.js M static/scripts/mvc/base/controlled-fetch-collection.js M static/scripts/mvc/collection/base-creator.js M static/scripts/mvc/collection/collection-li-edit.js M static/scripts/mvc/collection/collection-li.js M static/scripts/mvc/collection/collection-model.js M static/scripts/mvc/collection/collection-view-edit.js M static/scripts/mvc/collection/collection-view.js M static/scripts/mvc/collection/list-collection-creator.js M static/scripts/mvc/collection/list-of-pairs-collection-creator.js M static/scripts/mvc/collection/pair-collection-creator.js M static/scripts/mvc/dataset/data.js M static/scripts/mvc/dataset/dataset-choice.js M static/scripts/mvc/dataset/dataset-edit-attributes.js M static/scripts/mvc/dataset/dataset-error.js M static/scripts/mvc/dataset/dataset-li-edit.js M static/scripts/mvc/dataset/dataset-li.js M static/scripts/mvc/dataset/dataset-list.js M static/scripts/mvc/dataset/dataset-model.js M static/scripts/mvc/dataset/states.js M static/scripts/mvc/form/form-data.js M static/scripts/mvc/form/form-input.js M static/scripts/mvc/form/form-parameters.js M static/scripts/mvc/form/form-repeat.js M static/scripts/mvc/form/form-section.js M static/scripts/mvc/form/form-view.js M static/scripts/mvc/form/form-wrapper.js M static/scripts/mvc/grid/grid-model.js M static/scripts/mvc/grid/grid-shared.js M static/scripts/mvc/grid/grid-template.js M static/scripts/mvc/grid/grid-view.js M static/scripts/mvc/history/copy-dialog.js M static/scripts/mvc/history/hda-li-edit.js M static/scripts/mvc/history/hda-li.js M static/scripts/mvc/history/hda-model.js M static/scripts/mvc/history/hdca-li-edit.js M static/scripts/mvc/history/hdca-li.js M static/scripts/mvc/history/hdca-model.js M static/scripts/mvc/history/history-content-model.js M static/scripts/mvc/history/history-contents.js M static/scripts/mvc/history/history-item-li.js M static/scripts/mvc/history/history-list.js M static/scripts/mvc/history/history-model.js M static/scripts/mvc/history/history-preferences.js M static/scripts/mvc/history/history-structure-view.js M static/scripts/mvc/history/history-view-annotated.js M static/scripts/mvc/history/history-view-edit-current.js M static/scripts/mvc/history/history-view-edit.js M static/scripts/mvc/history/history-view.js M static/scripts/mvc/history/job-dag.js M static/scripts/mvc/history/job-states-model.js M static/scripts/mvc/history/multi-panel.js M static/scripts/mvc/history/options-menu.js M static/scripts/mvc/job/job-li.js M static/scripts/mvc/job/job-model.js M static/scripts/mvc/job/job-params.js M static/scripts/mvc/lazy/lazy-limited.js M static/scripts/mvc/library/library-dataset-view.js M static/scripts/mvc/library/library-folder-view.js M static/scripts/mvc/library/library-folderlist-view.js M static/scripts/mvc/library/library-folderrow-view.js M static/scripts/mvc/library/library-foldertoolbar-view.js M static/scripts/mvc/library/library-library-view.js M static/scripts/mvc/library/library-librarylist-view.js M static/scripts/mvc/library/library-libraryrow-view.js M static/scripts/mvc/library/library-librarytoolbar-view.js M 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static/scripts/mvc/upload/composite/composite-view.js M static/scripts/mvc/upload/default/default-row.js M static/scripts/mvc/upload/default/default-view.js M static/scripts/mvc/upload/upload-button.js M static/scripts/mvc/upload/upload-extension.js M static/scripts/mvc/upload/upload-ftp.js M static/scripts/mvc/upload/upload-model.js M static/scripts/mvc/upload/upload-settings.js M static/scripts/mvc/upload/upload-view.js M static/scripts/mvc/user/user-custom-builds.js M static/scripts/mvc/user/user-model.js M static/scripts/mvc/user/user-preferences.js M static/scripts/mvc/user/user-quotameter.js M static/scripts/mvc/visualization/visualization-model.js M static/scripts/mvc/webhooks.js M static/scripts/mvc/workflow/workflow-canvas.js M static/scripts/mvc/workflow/workflow-connector.js M static/scripts/mvc/workflow/workflow-forms.js M static/scripts/mvc/workflow/workflow-icons.js M static/scripts/mvc/workflow/workflow-manager.js M static/scripts/mvc/workflow/workflow-model.js M static/scripts/mvc/workflow/workflow-node.js M static/scripts/mvc/workflow/workflow-terminals.js M static/scripts/mvc/workflow/workflow-view-data.js M static/scripts/mvc/workflow/workflow-view-node.js M static/scripts/mvc/workflow/workflow-view-terminals.js M static/scripts/mvc/workflow/workflow-view.js M static/scripts/mvc/workflow/workflow.js M static/scripts/nls/de/locale.js M static/scripts/nls/es/locale.js M static/scripts/nls/fr/locale.js M static/scripts/nls/ja/locale.js M static/scripts/nls/locale.js M static/scripts/nls/zh/locale.js M static/scripts/onload.js M static/scripts/polyfills.js M static/scripts/reports/run_stats.js M static/scripts/toolshed/groups/group-detail-view.js M static/scripts/toolshed/groups/group-list-view.js M static/scripts/toolshed/groups/group-listrow-view.js M static/scripts/toolshed/groups/group-model.js M static/scripts/toolshed/toolshed.groups.js M static/scripts/ui/autocom_tagging.js M static/scripts/ui/editable-text.js M static/scripts/ui/fa-icon-button.js M static/scripts/ui/filter-control.js M static/scripts/ui/hoverhighlight.js M static/scripts/ui/loading-indicator.js M static/scripts/ui/mode-button.js M static/scripts/ui/pagination.js M static/scripts/ui/peek-column-selector.js M static/scripts/ui/popupmenu.js M static/scripts/ui/scroll-panel.js M static/scripts/ui/search-input.js M static/scripts/utils/add-logging.js M static/scripts/utils/ajax-queue.js M static/scripts/utils/async-save-text.js M static/scripts/utils/config.js M static/scripts/utils/deferred.js M static/scripts/utils/graph.js M static/scripts/utils/levenshtein.js M static/scripts/utils/localization.js M static/scripts/utils/metrics-logger.js M static/scripts/utils/natural-sort.js M static/scripts/utils/query-string-parsing.js M static/scripts/utils/uploadbox.js M static/scripts/utils/utils.js M static/scripts/viz/bbi-data-manager.js M static/scripts/viz/circster.js M static/scripts/viz/phyloviz.js M static/scripts/viz/sweepster.js M static/scripts/viz/trackster.js M static/scripts/viz/trackster/filters.js M static/scripts/viz/trackster/painters.js M static/scripts/viz/trackster/slotting.js M static/scripts/viz/trackster/tracks.js M static/scripts/viz/trackster/util.js M static/scripts/viz/visualization.js M static/scripts/viz/viz_views.js M static/style/blue/base.css Log Message: ----------- build client for release with maps Commit: c3ada7f16973718f49ffeb1de8dc44f882ee9fd2 https://github.com/galaxyproject/galaxy/commit/c3ada7f16973718f49ffeb1de8dc… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-02-05 (Mon, 05 Feb 2018) Changed paths: M lib/galaxy/tools/parser/xml.py Log Message: ----------- Merge pull request #5460 from jmchilton/fix_oom_parse [18.01] Fix tool stdio level parsing for OOM level. Commit: c2abd3f813bde3be116e692f49347c71164f97a2 https://github.com/galaxyproject/galaxy/commit/c2abd3f813bde3be116e692f4934… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-02-05 (Mon, 05 Feb 2018) Changed paths: A static/maps/admin.toolshed.js.map A static/maps/galaxy.interactive_environments.js.map A static/maps/galaxy.js.map A static/maps/galaxy.library.js.map A static/maps/galaxy.pages.js.map A static/maps/i18n.js.map A static/maps/layout/generic-nav-view.js.map A static/maps/layout/masthead.js.map A static/maps/layout/menu.js.map A static/maps/layout/modal.js.map A static/maps/layout/page.js.map A static/maps/layout/panel.js.map A static/maps/layout/router.js.map A static/maps/layout/scratchbook.js.map A static/maps/legacy/grid/grid-model.js.map A static/maps/legacy/grid/grid-template.js.map A static/maps/legacy/grid/grid-view.js.map A static/maps/mvc/annotation.js.map A static/maps/mvc/base-mvc.js.map A static/maps/mvc/base/controlled-fetch-collection.js.map A static/maps/mvc/collection/base-creator.js.map A static/maps/mvc/collection/collection-li-edit.js.map A static/maps/mvc/collection/collection-li.js.map A static/maps/mvc/collection/collection-model.js.map A static/maps/mvc/collection/collection-view-edit.js.map A static/maps/mvc/collection/collection-view.js.map A static/maps/mvc/collection/list-collection-creator.js.map A static/maps/mvc/collection/list-of-pairs-collection-creator.js.map A static/maps/mvc/collection/pair-collection-creator.js.map A static/maps/mvc/dataset/data.js.map A static/maps/mvc/dataset/dataset-choice.js.map A static/maps/mvc/dataset/dataset-edit-attributes.js.map A static/maps/mvc/dataset/dataset-error.js.map A static/maps/mvc/dataset/dataset-li-edit.js.map A static/maps/mvc/dataset/dataset-li.js.map A static/maps/mvc/dataset/dataset-list.js.map A static/maps/mvc/dataset/dataset-model.js.map A static/maps/mvc/dataset/states.js.map A static/maps/mvc/form/form-data.js.map A static/maps/mvc/form/form-input.js.map A static/maps/mvc/form/form-parameters.js.map A static/maps/mvc/form/form-repeat.js.map A static/maps/mvc/form/form-section.js.map A static/maps/mvc/form/form-view.js.map A static/maps/mvc/form/form-wrapper.js.map A static/maps/mvc/grid/grid-model.js.map A static/maps/mvc/grid/grid-shared.js.map A static/maps/mvc/grid/grid-template.js.map A static/maps/mvc/grid/grid-view.js.map A static/maps/mvc/history/copy-dialog.js.map A static/maps/mvc/history/hda-li-edit.js.map A static/maps/mvc/history/hda-li.js.map A static/maps/mvc/history/hda-model.js.map A static/maps/mvc/history/hdca-li-edit.js.map A static/maps/mvc/history/hdca-li.js.map A static/maps/mvc/history/hdca-model.js.map A static/maps/mvc/history/history-content-model.js.map A static/maps/mvc/history/history-contents.js.map A static/maps/mvc/history/history-item-li.js.map A static/maps/mvc/history/history-list.js.map A static/maps/mvc/history/history-model.js.map A static/maps/mvc/history/history-preferences.js.map A static/maps/mvc/history/history-structure-view.js.map A static/maps/mvc/history/history-view-annotated.js.map A static/maps/mvc/history/history-view-edit-current.js.map A static/maps/mvc/history/history-view-edit.js.map A static/maps/mvc/history/history-view.js.map A static/maps/mvc/history/job-dag.js.map A static/maps/mvc/history/job-states-model.js.map A static/maps/mvc/history/multi-panel.js.map A static/maps/mvc/history/options-menu.js.map A static/maps/mvc/job/job-li.js.map A static/maps/mvc/job/job-model.js.map A static/maps/mvc/job/job-params.js.map A static/maps/mvc/lazy/lazy-limited.js.map A static/maps/mvc/library/library-dataset-view.js.map A static/maps/mvc/library/library-folder-view.js.map A static/maps/mvc/library/library-folderlist-view.js.map A static/maps/mvc/library/library-folderrow-view.js.map A static/maps/mvc/library/library-foldertoolbar-view.js.map A static/maps/mvc/library/library-library-view.js.map A static/maps/mvc/library/library-librarylist-view.js.map A static/maps/mvc/library/library-libraryrow-view.js.map A static/maps/mvc/library/library-librarytoolbar-view.js.map A static/maps/mvc/library/library-model.js.map A static/maps/mvc/library/library-util.js.map A static/maps/mvc/list/list-item.js.map A static/maps/mvc/list/list-view.js.map A static/maps/mvc/tag.js.map A static/maps/mvc/tool/tool-form-base.js.map A static/maps/mvc/tool/tool-form-composite.js.map A static/maps/mvc/tool/tool-form.js.map A static/maps/mvc/tool/tool-genomespace.js.map A static/maps/mvc/tool/tools.js.map A static/maps/mvc/toolshed/categories-view.js.map A static/maps/mvc/toolshed/repo-queue-view.js.map A static/maps/mvc/toolshed/repo-status-view.js.map A static/maps/mvc/toolshed/repositories-view.js.map A static/maps/mvc/toolshed/repository-queue-view.js.map A static/maps/mvc/toolshed/repository-view.js.map A static/maps/mvc/toolshed/shed-list-view.js.map A static/maps/mvc/toolshed/toolshed-model.js.map A static/maps/mvc/toolshed/util.js.map A 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static/maps/mvc/ui/ui-thumbnails.js.map A static/maps/mvc/upload/collection/collection-row.js.map A static/maps/mvc/upload/collection/collection-view.js.map A static/maps/mvc/upload/composite/composite-row.js.map A static/maps/mvc/upload/composite/composite-view.js.map A static/maps/mvc/upload/default/default-row.js.map A static/maps/mvc/upload/default/default-view.js.map A static/maps/mvc/upload/upload-button.js.map A static/maps/mvc/upload/upload-extension.js.map A static/maps/mvc/upload/upload-ftp.js.map A static/maps/mvc/upload/upload-model.js.map A static/maps/mvc/upload/upload-settings.js.map A static/maps/mvc/upload/upload-view.js.map A static/maps/mvc/user/user-custom-builds.js.map A static/maps/mvc/user/user-model.js.map A static/maps/mvc/user/user-preferences.js.map A static/maps/mvc/user/user-quotameter.js.map A static/maps/mvc/visualization/visualization-model.js.map A static/maps/mvc/webhooks.js.map A static/maps/mvc/workflow/workflow-canvas.js.map A static/maps/mvc/workflow/workflow-connector.js.map A static/maps/mvc/workflow/workflow-forms.js.map A static/maps/mvc/workflow/workflow-icons.js.map A static/maps/mvc/workflow/workflow-manager.js.map A static/maps/mvc/workflow/workflow-model.js.map A static/maps/mvc/workflow/workflow-node.js.map A static/maps/mvc/workflow/workflow-terminals.js.map A static/maps/mvc/workflow/workflow-view-data.js.map A static/maps/mvc/workflow/workflow-view-node.js.map A static/maps/mvc/workflow/workflow-view-terminals.js.map A static/maps/mvc/workflow/workflow-view.js.map A static/maps/mvc/workflow/workflow.js.map A static/maps/nls/de/locale.js.map A static/maps/nls/es/locale.js.map A static/maps/nls/fr/locale.js.map A static/maps/nls/ja/locale.js.map A static/maps/nls/locale.js.map A static/maps/nls/zh/locale.js.map A static/maps/onload.js.map A static/maps/polyfills.js.map A static/maps/reports/run_stats.js.map A static/maps/toolshed/groups/group-detail-view.js.map A 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static/scripts/mvc/workflow/workflow-node.js M static/scripts/mvc/workflow/workflow-terminals.js M static/scripts/mvc/workflow/workflow-view-data.js M static/scripts/mvc/workflow/workflow-view-node.js M static/scripts/mvc/workflow/workflow-view-terminals.js M static/scripts/mvc/workflow/workflow-view.js M static/scripts/mvc/workflow/workflow.js M static/scripts/nls/de/locale.js M static/scripts/nls/es/locale.js M static/scripts/nls/fr/locale.js M static/scripts/nls/ja/locale.js M static/scripts/nls/locale.js M static/scripts/nls/zh/locale.js M static/scripts/onload.js M static/scripts/polyfills.js M static/scripts/reports/run_stats.js M static/scripts/toolshed/groups/group-detail-view.js M static/scripts/toolshed/groups/group-list-view.js M static/scripts/toolshed/groups/group-listrow-view.js M static/scripts/toolshed/groups/group-model.js M static/scripts/toolshed/toolshed.groups.js M static/scripts/ui/autocom_tagging.js M static/scripts/ui/editable-text.js M static/scripts/ui/fa-icon-button.js M static/scripts/ui/filter-control.js M static/scripts/ui/hoverhighlight.js M static/scripts/ui/loading-indicator.js M static/scripts/ui/mode-button.js M static/scripts/ui/pagination.js M static/scripts/ui/peek-column-selector.js M static/scripts/ui/popupmenu.js M static/scripts/ui/scroll-panel.js M static/scripts/ui/search-input.js M static/scripts/utils/add-logging.js M static/scripts/utils/ajax-queue.js M static/scripts/utils/async-save-text.js M static/scripts/utils/config.js M static/scripts/utils/deferred.js M static/scripts/utils/graph.js M static/scripts/utils/levenshtein.js M static/scripts/utils/localization.js M static/scripts/utils/metrics-logger.js M static/scripts/utils/natural-sort.js M static/scripts/utils/query-string-parsing.js M static/scripts/utils/uploadbox.js M static/scripts/utils/utils.js M static/scripts/viz/bbi-data-manager.js M static/scripts/viz/circster.js M static/scripts/viz/phyloviz.js M static/scripts/viz/sweepster.js M static/scripts/viz/trackster.js M static/scripts/viz/trackster/filters.js M static/scripts/viz/trackster/painters.js M static/scripts/viz/trackster/slotting.js M static/scripts/viz/trackster/tracks.js M static/scripts/viz/trackster/util.js M static/scripts/viz/visualization.js M static/scripts/viz/viz_views.js M static/style/blue/base.css Log Message: ----------- Merge pull request #5395 from martenson/production-1801 [18.01] Build production client Commit: 04e4da0d31a2097d5db44a0ddbc3d7d9078d2474 https://github.com/galaxyproject/galaxy/commit/04e4da0d31a2097d5db44a0ddbc3… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-02-07 (Wed, 07 Feb 2018) Changed paths: M lib/galaxy/tools/deps/__init__.py Log Message: ----------- Revert "Avoid duplicate dependency installation" This reverts commit c0cf41a15ccf7f9060c4dd891ff4b16814f7ecbc. Commit: 11ec4ee93d1f15ca69dfbf6e8a48132a64717730 https://github.com/galaxyproject/galaxy/commit/11ec4ee93d1f15ca69dfbf6e8a48… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-02-07 (Wed, 07 Feb 2018) Changed paths: M lib/galaxy/tools/deps/__init__.py M lib/galaxy/tools/deps/views.py Log Message: ----------- Revert "Try next dep. resolver if building env failed" This reverts commit e821d469e60959614147bde59163d75681bae266. Commit: 62540a97472ead80273e10cd54568b5184595307 https://github.com/galaxyproject/galaxy/commit/62540a97472ead80273e10cd5456… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-02-07 (Wed, 07 Feb 2018) Changed paths: M lib/galaxy/tools/deps/__init__.py M lib/galaxy/tools/deps/views.py Log Message: ----------- Merge pull request #5470 from natefoo/revert-5036 [18.01] Revert #5036 Commit: 65e2e0b48f59948a7df46f1d3440ffd127757be3 https://github.com/galaxyproject/galaxy/commit/65e2e0b48f59948a7df46f1d3440… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-02-07 (Wed, 07 Feb 2018) Changed paths: M lib/galaxy/tools/deps/__init__.py M lib/galaxy/tools/deps/views.py M lib/galaxy/tools/parser/xml.py M static/style/blue/base.css Log Message: ----------- Merge remote-tracking branch 'origin/release_18.01' into dev Compare: https://github.com/galaxyproject/galaxy/compare/12f72412abe1...65e2e0b48f59

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[galaxyproject/galaxy] 04e4da: Revert "Avoid duplicate dependency installation"
by GitHub 07 Feb '18

07 Feb '18

Branch: refs/heads/release_18.01 Home: https://github.com/galaxyproject/galaxy Commit: 04e4da0d31a2097d5db44a0ddbc3d7d9078d2474 https://github.com/galaxyproject/galaxy/commit/04e4da0d31a2097d5db44a0ddbc3… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-02-07 (Wed, 07 Feb 2018) Changed paths: M lib/galaxy/tools/deps/__init__.py Log Message: ----------- Revert "Avoid duplicate dependency installation" This reverts commit c0cf41a15ccf7f9060c4dd891ff4b16814f7ecbc. Commit: 11ec4ee93d1f15ca69dfbf6e8a48132a64717730 https://github.com/galaxyproject/galaxy/commit/11ec4ee93d1f15ca69dfbf6e8a48… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-02-07 (Wed, 07 Feb 2018) Changed paths: M lib/galaxy/tools/deps/__init__.py M lib/galaxy/tools/deps/views.py Log Message: ----------- Revert "Try next dep. resolver if building env failed" This reverts commit e821d469e60959614147bde59163d75681bae266. Commit: 62540a97472ead80273e10cd54568b5184595307 https://github.com/galaxyproject/galaxy/commit/62540a97472ead80273e10cd5456… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-02-07 (Wed, 07 Feb 2018) Changed paths: M lib/galaxy/tools/deps/__init__.py M lib/galaxy/tools/deps/views.py Log Message: ----------- Merge pull request #5470 from natefoo/revert-5036 [18.01] Revert #5036 Compare: https://github.com/galaxyproject/galaxy/compare/c2abd3f813bd...62540a97472e

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[galaxyproject/galaxy] c5fa91: draft configurable locale
by GitHub 07 Feb '18

07 Feb '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: c5fa911b10e90229940bf65467a1610f3b23ee2c https://github.com/galaxyproject/galaxy/commit/c5fa911b10e90229940bf65467a1… Author: Anthony Bretaudeau <anthony.bretaudeau(a)inria.fr> Date: 2018-01-09 (Tue, 09 Jan 2018) Changed paths: M client/galaxy/scripts/utils/localization.js M config/galaxy.ini.sample M config/user_preferences_extra_conf.yml.sample Log Message: ----------- draft configurable locale Commit: 1c2bd5ff284925ccadc8957bb2dc40eba33f988f https://github.com/galaxyproject/galaxy/commit/1c2bd5ff284925ccadc8957bb2dc… Author: Anthony Bretaudeau <anthony.bretaudeau(a)inria.fr> Date: 2018-01-19 (Fri, 19 Jan 2018) Changed paths: M client/galaxy/scripts/galaxy.js M client/galaxy/scripts/utils/localization.js M lib/galaxy/config.py M lib/galaxy/managers/configuration.py M templates/webapps/galaxy/galaxy.masthead.mako Log Message: ----------- use session to store current locale Commit: 8d1a499e42bd7c71ec9b5e727a28a8ef9b3973ed https://github.com/galaxyproject/galaxy/commit/8d1a499e42bd7c71ec9b5e727a28… Author: Anthony Bretaudeau <anthony.bretaudeau(a)inria.fr> Date: 2018-01-19 (Fri, 19 Jan 2018) Changed paths: M .ci/jenkins/selenium/run_tests.sh M .gitignore M .travis.yml M Makefile M client/galaxy/scripts/components/Citations.vue M client/galaxy/scripts/components/HistoryImport.vue M client/galaxy/scripts/components/Message.vue M client/galaxy/scripts/components/admin/BaseGrid.vue M client/galaxy/scripts/components/admin/DataManagerGrid.vue M client/galaxy/scripts/components/admin/DataTables.vue M client/galaxy/scripts/components/admin/DataTablesGrid.vue M client/galaxy/scripts/mvc/dataset/dataset-error.js M client/galaxy/scripts/mvc/library/library-dataset-view.js M client/galaxy/scripts/mvc/tool/tool-form-composite.js M client/galaxy/scripts/mvc/tool/tool-form.js M client/galaxy/scripts/mvc/tours.js M client/galaxy/scripts/mvc/workflow/workflow-node.js M client/galaxy/scripts/nls/zh/locale.js M client/package.json M client/webpack.config.js M client/yarn.lock M config/datatypes_conf.xml.sample R config/galaxy.ini.sample A config/galaxy.yml.sample M doc/Makefile A doc/source/admin/_inc_proxy_prereq.rst A doc/source/admin/_inc_proxy_serving_root.rst A doc/source/admin/_inc_proxy_ssl.rst A doc/source/admin/apache.md M doc/source/admin/authentication.md M doc/source/admin/cluster.md M doc/source/admin/conda_faq.rst A doc/source/admin/config.rst A doc/source/admin/config_logging.rst M doc/source/admin/dependency_resolvers.rst A doc/source/admin/galaxy_options.rst M doc/source/admin/index.rst M doc/source/admin/jobs.md A doc/source/admin/nginx.md A doc/source/admin/options.rst M doc/source/admin/production.md A doc/source/admin/proxy_package_layout.rst M doc/source/admin/reports.md M doc/source/admin/reports.rst M doc/source/admin/scaling.md R doc/source/admin/special_topics/apache.md M doc/source/admin/special_topics/bug_reports.rst M 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lib/galaxy/tools/toolbox/watcher.py M lib/galaxy/tools/xsd/galaxy.xsd M lib/galaxy/util/path/__init__.py M lib/galaxy/web/stack/__init__.py M lib/galaxy/webapps/config_manage.py M lib/galaxy/webapps/galaxy/api/configuration.py A lib/galaxy/webapps/galaxy/config_schema.yml M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py A lib/galaxy/webapps/galaxy/uwsgi_schema.yml M lib/galaxy/webapps/reports/config.py M lib/galaxy/webapps/tool_shed/config.py M lib/galaxy/workflow/modules.py M scripts/common_startup.sh M scripts/common_startup_functions.sh A scripts/common_startup_variables.sh M scripts/db_shell.py M scripts/galaxy-main M scripts/get_uwsgi_args.py A scripts/maintenance.sh M scripts/tool_shed/bootstrap_tool_shed/bootstrap_tool_shed.sh M scripts/tool_shed/bootstrap_tool_shed/bootstrap_util.py M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/extended.bundled.js M static/scripts/bundled/libs.bundled.js M static/scripts/mvc/dataset/dataset-error.js M static/scripts/mvc/tool/tool-form-composite.js M static/scripts/mvc/workflow/workflow-node.js M static/scripts/nls/zh/locale.js M templates/webapps/galaxy/history/display_structured.mako M test/api/test_workflows.py M test/base/driver_util.py M test/docker/base/run_test_wrapper.sh A test/functional/tools/multi_output_recurse.xml M test/functional/tools/samples_tool_conf.xml A test/unit/config/1705_allow_path_paste/config/galaxy.ini A test/unit/config/__init__.py M test/unit/config/test_config_manage.py M test/unit/tools/test_collect_primary_datasets.py M tools/data_source/microbial_import_code.py Log Message: ----------- ini -> yml Commit: 3f2f5e6af4890d5edd1001844bf2c5eb9275daa6 https://github.com/galaxyproject/galaxy/commit/3f2f5e6af4890d5edd1001844bf2… Author: Anthony Bretaudeau <anthony.bretaudeau(a)inria.fr> Date: 2018-01-19 (Fri, 19 Jan 2018) Changed paths: M doc/source/admin/galaxy_options.rst M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- doc/schema Commit: dfe25ac131582a5315369ef8ba4e94abff7bff94 https://github.com/galaxyproject/galaxy/commit/dfe25ac131582a5315369ef8ba4e… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-02-05 (Mon, 05 Feb 2018) Changed paths: M client/galaxy/scripts/galaxy.js M client/galaxy/scripts/mvc/tool/tool-form.js Log Message: ----------- Client format Commit: 02fa48f85cdaa1ed0722f050b6953d6bbe7113c7 https://github.com/galaxyproject/galaxy/commit/02fa48f85cdaa1ed0722f050b695… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-02-05 (Mon, 05 Feb 2018) Changed paths: M client/galaxy/scripts/galaxy.js Log Message: ----------- Define locale var, log global usage of $ Commit: c3bb2859039338c513e1f9ac871dc569d5469e5c https://github.com/galaxyproject/galaxy/commit/c3bb2859039338c513e1f9ac871d… Author: Anthony Bretaudeau <abretaud(a)irisa.fr> Date: 2018-02-07 (Wed, 07 Feb 2018) Changed paths: M client/galaxy/scripts/galaxy.js M client/galaxy/scripts/mvc/tool/tool-form.js Log Message: ----------- Merge pull request #2 from dannon/i18n Minor tweaks to i18n work Commit: 4dbfd50f064256f2af8f7e3b08ddbb8a2b352aac https://github.com/galaxyproject/galaxy/commit/4dbfd50f064256f2af8f7e3b08dd… Author: Anthony Bretaudeau <abretaud(a)irisa.fr> Date: 2018-02-07 (Wed, 07 Feb 2018) Changed paths: M .ci/check_py3_compatibility.sh M .ci/flake8_blacklist.txt M .ci/flake8_wrapper.sh M .ci/flake8_wrapper_docstrings.sh M .ci/jenkins/api/run_tests.sh M .ci/jenkins/selenium-compose/run_tests.sh M .ci/jenkins/selenium/run_tests.sh M .gitignore M .travis.yml M client/galaxy/scripts/apps/extended.js M client/galaxy/scripts/layout/masthead.js M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/layout/page.js M client/galaxy/scripts/mvc/base/controlled-fetch-collection.js M client/galaxy/scripts/mvc/collection/collection-model.js M client/galaxy/scripts/mvc/dataset/dataset-li.js M client/galaxy/scripts/mvc/history/hdca-li-edit.js M client/galaxy/scripts/mvc/history/history-contents.js M client/galaxy/scripts/mvc/history/history-model.js M client/galaxy/scripts/mvc/history/multi-panel.js M client/galaxy/scripts/mvc/history/options-menu.js M client/galaxy/scripts/mvc/tool/tool-form-base.js M client/galaxy/scripts/mvc/tool/tool-form-composite.js M client/galaxy/scripts/mvc/tool/tool-form.js M client/galaxy/scripts/mvc/webhooks.js M client/galaxy/scripts/mvc/workflow/workflow-node.js M client/galaxy/scripts/onload.js M client/galaxy/scripts/qunit/test-app.js M client/galaxy/scripts/qunit/tests/page_tests.js M client/galaxy/style/less/base.less M client/galaxy/style/less/dataset.less M client/galaxy/style/less/history.less M client/galaxy/style/less/ui/icon-btn.less M config/auth_conf.xml.sample M config/datatypes_conf.xml.sample M config/galaxy.yml.sample M config/job_conf.xml.sample_advanced A config/plugins/webhooks/demo/search/config.yml R config/plugins/webhooks/demo/search/config/searchover.yaml A config/plugins/webhooks/demo/search/script.js R 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doc/source/admin/framework_dependencies.rst M doc/source/admin/galaxy_options.rst M doc/source/admin/scaling.md M doc/source/admin/special_topics/webhooks.rst M lib/galaxy/app.py M lib/galaxy/auth/__init__.py M lib/galaxy/auth/providers/ldap_ad.py A lib/galaxy/auth/util.py M lib/galaxy/config.py M lib/galaxy/dataset_collections/structure.py M lib/galaxy/datatypes/binary.py A lib/galaxy/datatypes/converters/bam_native_to_bam_converter.xml M lib/galaxy/datatypes/converters/bam_to_bigwig_converter.xml M lib/galaxy/datatypes/converters/sam_to_bam.py A lib/galaxy/datatypes/converters/sam_to_bam_native.xml A lib/galaxy/datatypes/phylip.py M lib/galaxy/datatypes/sniff.py A lib/galaxy/datatypes/test/test.phylip R lib/galaxy/dependencies/conda-environment.txt A lib/galaxy/dependencies/conda-file.sh M lib/galaxy/dependencies/conditional-requirements.txt M lib/galaxy/dependencies/pinned-hashed-requirements.txt M lib/galaxy/dependencies/pinned-requirements.txt M 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lib/galaxy/util/logging/__init__.py M lib/galaxy/version.py M lib/galaxy/visualization/data_providers/genome.py M lib/galaxy/web/framework/base.py M lib/galaxy/web/framework/helpers/__init__.py A lib/galaxy/web/framework/helpers/tags.py M lib/galaxy/web/framework/webapp.py M lib/galaxy/web/security/__init__.py M lib/galaxy/web/stack/message.py M lib/galaxy/webapps/config_manage.py M lib/galaxy/webapps/galaxy/api/histories.py M lib/galaxy/webapps/galaxy/api/history_contents.py M lib/galaxy/webapps/galaxy/api/jobs.py M lib/galaxy/webapps/galaxy/api/webhooks.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/galaxy/config_schema.yml M lib/galaxy/webapps/galaxy/controllers/dataset.py M lib/galaxy/webapps/galaxy/controllers/history.py M lib/galaxy/webapps/galaxy/controllers/user.py M lib/galaxy/webapps/tool_shed/config_schema.yml M lib/galaxy/webapps/tool_shed/model/__init__.py M lib/galaxy/webhooks/__init__.py M lib/galaxy/workflow/modules.py M 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static/scripts/layout/panel.js R static/scripts/layout/router.js R static/scripts/layout/scratchbook.js R static/scripts/legacy/grid/grid-model.js R static/scripts/legacy/grid/grid-template.js R static/scripts/legacy/grid/grid-view.js R static/scripts/libs/backbone.js R static/scripts/libs/bbi/bigwig.js R static/scripts/libs/bbi/jquery-ajax-native.js R static/scripts/libs/bbi/jszlib.js R static/scripts/libs/bbi/spans.js R static/scripts/libs/bibtexParse.js R static/scripts/libs/bootstrap-tour.js R static/scripts/libs/bootstrap.js R static/scripts/libs/d3.js R static/scripts/libs/farbtastic.js R static/scripts/libs/jquery.sparklines.js R static/scripts/libs/jquery/jquery-ui.js R static/scripts/libs/jquery/jquery.autocomplete.js R static/scripts/libs/jquery/jquery.complexify.js R static/scripts/libs/jquery/jquery.cookie.js R static/scripts/libs/jquery/jquery.dynatree.js R static/scripts/libs/jquery/jquery.event.drag.js R static/scripts/libs/jquery/jquery.event.drop.js R static/scripts/libs/jquery/jquery.event.hover.js R static/scripts/libs/jquery/jquery.form.js R static/scripts/libs/jquery/jquery.js R static/scripts/libs/jquery/jquery.migrate.js R static/scripts/libs/jquery/jquery.mousewheel.js R static/scripts/libs/jquery/jquery.rating.js R static/scripts/libs/jquery/jquery.wymeditor.js R static/scripts/libs/jquery/jstorage.js R static/scripts/libs/jquery/jstree.js R static/scripts/libs/jquery/select2.js R static/scripts/libs/raven.js R static/scripts/libs/require.js R static/scripts/libs/toastr.js R static/scripts/libs/underscore.js R static/scripts/mvc/annotation.js R static/scripts/mvc/base-mvc.js R static/scripts/mvc/base/controlled-fetch-collection.js R static/scripts/mvc/collection/base-creator.js R static/scripts/mvc/collection/collection-li-edit.js R static/scripts/mvc/collection/collection-li.js R static/scripts/mvc/collection/collection-model.js R static/scripts/mvc/collection/collection-view-edit.js R static/scripts/mvc/collection/collection-view.js R static/scripts/mvc/collection/list-collection-creator.js R static/scripts/mvc/collection/list-of-pairs-collection-creator.js R static/scripts/mvc/collection/pair-collection-creator.js R static/scripts/mvc/dataset/data.js R static/scripts/mvc/dataset/dataset-choice.js R static/scripts/mvc/dataset/dataset-edit-attributes.js R static/scripts/mvc/dataset/dataset-error.js R static/scripts/mvc/dataset/dataset-li-edit.js R static/scripts/mvc/dataset/dataset-li.js R static/scripts/mvc/dataset/dataset-list.js R static/scripts/mvc/dataset/dataset-model.js R static/scripts/mvc/dataset/states.js R static/scripts/mvc/form/form-data.js R static/scripts/mvc/form/form-input.js R static/scripts/mvc/form/form-parameters.js R static/scripts/mvc/form/form-repeat.js R static/scripts/mvc/form/form-section.js R static/scripts/mvc/form/form-view.js R static/scripts/mvc/form/form-wrapper.js R static/scripts/mvc/grid/grid-model.js R static/scripts/mvc/grid/grid-shared.js R static/scripts/mvc/grid/grid-template.js R static/scripts/mvc/grid/grid-view.js R static/scripts/mvc/history/copy-dialog.js R static/scripts/mvc/history/hda-li-edit.js R static/scripts/mvc/history/hda-li.js R static/scripts/mvc/history/hda-model.js R static/scripts/mvc/history/hdca-li-edit.js R static/scripts/mvc/history/hdca-li.js R static/scripts/mvc/history/hdca-model.js R static/scripts/mvc/history/history-content-model.js R static/scripts/mvc/history/history-contents.js R static/scripts/mvc/history/history-item-li.js R static/scripts/mvc/history/history-list.js R static/scripts/mvc/history/history-model.js R static/scripts/mvc/history/history-preferences.js R static/scripts/mvc/history/history-structure-view.js R static/scripts/mvc/history/history-view-annotated.js R static/scripts/mvc/history/history-view-edit-current.js R static/scripts/mvc/history/history-view-edit.js R static/scripts/mvc/history/history-view.js R static/scripts/mvc/history/job-dag.js R static/scripts/mvc/history/job-states-model.js R static/scripts/mvc/history/multi-panel.js R static/scripts/mvc/history/options-menu.js R static/scripts/mvc/job/job-li.js R static/scripts/mvc/job/job-model.js R static/scripts/mvc/job/job-params.js R static/scripts/mvc/lazy/lazy-limited.js R static/scripts/mvc/library/library-dataset-view.js R static/scripts/mvc/library/library-folder-view.js R static/scripts/mvc/library/library-folderlist-view.js R static/scripts/mvc/library/library-folderrow-view.js R static/scripts/mvc/library/library-foldertoolbar-view.js R static/scripts/mvc/library/library-library-view.js R static/scripts/mvc/library/library-librarylist-view.js R static/scripts/mvc/library/library-libraryrow-view.js R static/scripts/mvc/library/library-librarytoolbar-view.js R static/scripts/mvc/library/library-model.js R static/scripts/mvc/library/library-util.js R static/scripts/mvc/list/list-item.js R static/scripts/mvc/list/list-view.js R static/scripts/mvc/tag.js R static/scripts/mvc/tool/tool-form-base.js R static/scripts/mvc/tool/tool-form-composite.js R static/scripts/mvc/tool/tool-form.js R static/scripts/mvc/tool/tool-genomespace.js R static/scripts/mvc/tool/tools.js R static/scripts/mvc/toolshed/categories-view.js R static/scripts/mvc/toolshed/repo-queue-view.js R static/scripts/mvc/toolshed/repo-status-view.js R static/scripts/mvc/toolshed/repositories-view.js R static/scripts/mvc/toolshed/repository-queue-view.js R static/scripts/mvc/toolshed/repository-view.js R static/scripts/mvc/toolshed/shed-list-view.js R static/scripts/mvc/toolshed/toolshed-model.js R static/scripts/mvc/toolshed/util.js R static/scripts/mvc/toolshed/workflows-view.js R static/scripts/mvc/tours.js R static/scripts/mvc/ui/error-modal.js R static/scripts/mvc/ui/icon-button.js R static/scripts/mvc/ui/popup-menu.js R static/scripts/mvc/ui/ui-buttons.js R static/scripts/mvc/ui/ui-color-picker.js R static/scripts/mvc/ui/ui-drilldown.js R static/scripts/mvc/ui/ui-frames.js R static/scripts/mvc/ui/ui-list.js R static/scripts/mvc/ui/ui-misc.js R static/scripts/mvc/ui/ui-modal.js R static/scripts/mvc/ui/ui-options.js R static/scripts/mvc/ui/ui-popover.js R static/scripts/mvc/ui/ui-portlet.js R static/scripts/mvc/ui/ui-select-content.js R static/scripts/mvc/ui/ui-select-default.js R static/scripts/mvc/ui/ui-select-ftp.js R static/scripts/mvc/ui/ui-select-genomespace.js R static/scripts/mvc/ui/ui-select-library.js R static/scripts/mvc/ui/ui-select.js R static/scripts/mvc/ui/ui-slider.js R static/scripts/mvc/ui/ui-table.js R static/scripts/mvc/ui/ui-tabs.js R static/scripts/mvc/ui/ui-thumbnails.js R static/scripts/mvc/upload/collection/collection-row.js R static/scripts/mvc/upload/collection/collection-view.js R static/scripts/mvc/upload/composite/composite-row.js R static/scripts/mvc/upload/composite/composite-view.js R static/scripts/mvc/upload/default/default-row.js R static/scripts/mvc/upload/default/default-view.js R static/scripts/mvc/upload/upload-button.js R static/scripts/mvc/upload/upload-extension.js R static/scripts/mvc/upload/upload-ftp.js R static/scripts/mvc/upload/upload-model.js R static/scripts/mvc/upload/upload-settings.js R static/scripts/mvc/upload/upload-view.js R static/scripts/mvc/user/user-custom-builds.js R static/scripts/mvc/user/user-model.js R static/scripts/mvc/user/user-preferences.js R static/scripts/mvc/user/user-quotameter.js R static/scripts/mvc/visualization/visualization-model.js R static/scripts/mvc/webhooks.js R static/scripts/mvc/workflow/workflow-canvas.js R static/scripts/mvc/workflow/workflow-connector.js R static/scripts/mvc/workflow/workflow-forms.js R static/scripts/mvc/workflow/workflow-icons.js R static/scripts/mvc/workflow/workflow-manager.js R static/scripts/mvc/workflow/workflow-model.js R static/scripts/mvc/workflow/workflow-node.js R static/scripts/mvc/workflow/workflow-terminals.js R static/scripts/mvc/workflow/workflow-view-data.js R static/scripts/mvc/workflow/workflow-view-node.js R static/scripts/mvc/workflow/workflow-view-terminals.js R static/scripts/mvc/workflow/workflow-view.js R static/scripts/mvc/workflow/workflow.js R static/scripts/nls/de/locale.js R static/scripts/nls/es/locale.js R static/scripts/nls/fr/locale.js R static/scripts/nls/ja/locale.js R static/scripts/nls/locale.js R static/scripts/nls/zh/locale.js R static/scripts/onload.js R static/scripts/polyfills.js R static/scripts/reports/run_stats.js R static/scripts/toolshed/groups/group-detail-view.js R static/scripts/toolshed/groups/group-list-view.js R static/scripts/toolshed/groups/group-listrow-view.js R static/scripts/toolshed/groups/group-model.js R static/scripts/toolshed/toolshed.groups.js R static/scripts/ui/autocom_tagging.js R static/scripts/ui/editable-text.js R static/scripts/ui/fa-icon-button.js R static/scripts/ui/filter-control.js R static/scripts/ui/hoverhighlight.js R static/scripts/ui/loading-indicator.js R static/scripts/ui/mode-button.js R static/scripts/ui/pagination.js R static/scripts/ui/peek-column-selector.js R static/scripts/ui/popupmenu.js R static/scripts/ui/scroll-panel.js R static/scripts/ui/search-input.js R static/scripts/utils/add-logging.js R static/scripts/utils/ajax-queue.js R static/scripts/utils/async-save-text.js R static/scripts/utils/config.js R static/scripts/utils/deferred.js R static/scripts/utils/graph.js R static/scripts/utils/levenshtein.js R static/scripts/utils/localization.js R static/scripts/utils/metrics-logger.js R static/scripts/utils/natural-sort.js R static/scripts/utils/query-string-parsing.js R static/scripts/utils/uploadbox.js R static/scripts/utils/utils.js R static/scripts/viz/bbi-data-manager.js R static/scripts/viz/circster.js R static/scripts/viz/phyloviz.js R static/scripts/viz/sweepster.js R static/scripts/viz/trackster.js R static/scripts/viz/trackster/filters.js R static/scripts/viz/trackster/painters.js R static/scripts/viz/trackster/slotting.js R static/scripts/viz/trackster/tracks.js R static/scripts/viz/trackster/util.js R static/scripts/viz/visualization.js R static/scripts/viz/viz_views.js M templates/admin/tool_shed_repository/deactivate_or_uninstall_repository.mako M templates/admin/tool_shed_repository/manage_repository_tool_dependencies.mako M templates/admin/tool_shed_repository/reset_metadata_on_selected_repositories.mako M templates/galaxy_client_app.mako M templates/user/register.mako M templates/webapps/galaxy/dataset/security_common.mako M templates/webapps/galaxy/history/display_structured.mako M templates/webapps/tool_shed/common/reset_metadata_on_selected_repositories.mako M templates/webapps/tool_shed/repository/tool_form.mako A test-data/bam_native_from_sam.bam M test-data/sam_with_header.sam M test/api/test_tools.py M test/api/test_webhooks.py M test/api/test_workflows.py M test/base/driver_util.py M test/base/integration_util.py M test/base/workflows_format_2/converter.py M test/functional/tools/collection_creates_dynamic_list_of_pairs.xml A test/functional/tools/job_environment_default.xml A test/functional/tools/job_environment_default_legacy.xml A test/functional/tools/job_environment_explicit_shared_home.xml A test/functional/tools/mulled_example_explicit.xml A test/functional/tools/mulled_example_simple.xml A test/functional/tools/sam_to_bam_native.xml M test/functional/tools/sample_datatypes_conf.xml M test/functional/tools/samples_tool_conf.xml M test/functional/twilltestcase.py A test/functional/webhooks/history_test1/config.yml R test/functional/webhooks/history_test1/config/history_test1.yml A test/functional/webhooks/history_test2/config.yml R test/functional/webhooks/history_test2/config/history_test2.yml A test/functional/webhooks/masthead_test/config.yml R test/functional/webhooks/masthead_test/config/masthead_test.yml A test/functional/webhooks/phdcomics/__init__.py A test/functional/webhooks/phdcomics/config.yaml R test/functional/webhooks/phdcomics/config/phdcomics.yaml R test/functional/webhooks/phdcomics/helper/__init__.py A test/functional/webhooks/phdcomics/script.js R test/functional/webhooks/phdcomics/static/script.js R test/functional/webhooks/phdcomics/static/styles.css A test/functional/webhooks/phdcomics/styles.css A test/functional/webhooks/trans_object/__init__.py A test/functional/webhooks/trans_object/config.yaml R test/functional/webhooks/trans_object/config/trans_object.yaml R test/functional/webhooks/trans_object/helper/__init__.py A test/functional/webhooks/xkcd/config.yml R test/functional/webhooks/xkcd/config/xkcd.yml A test/functional/webhooks/xkcd/script.js R test/functional/webhooks/xkcd/static/script.js R test/functional/webhooks/xkcd/static/styles.css A test/functional/webhooks/xkcd/styles.css A test/integration/dockerized_job_conf.xml A test/integration/sets_tmp_dir_expression_job_conf.xml A test/integration/sets_tmp_dir_to_true_job_conf.xml A test/integration/simple_job_conf.xml A test/integration/test_dockerized_jobs.py A test/integration/test_job_environments.py M test/manual/launch_and_run.sh M test/selenium_tests/test_tool_describing_tours.py M test/shed_functional/base/twilltestcase.py M test/unit/jobs/test_mapper.py M test/unit/jobs/test_runner_local.py M test/unit/managers/test_HistoryManager.py M test/unit/tools/test_evaluation.py M tox.ini Log Message: ----------- Merge branch 'dev' into i18n Commit: 12f72412abe1e1675f5755c77bda08707116db67 https://github.com/galaxyproject/galaxy/commit/12f72412abe1e1675f5755c77bda… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-02-07 (Wed, 07 Feb 2018) Changed paths: M client/galaxy/scripts/galaxy.js M client/galaxy/scripts/utils/localization.js M config/galaxy.yml.sample M config/user_preferences_extra_conf.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/managers/configuration.py M lib/galaxy/webapps/galaxy/config_schema.yml M templates/webapps/galaxy/galaxy.masthead.mako Log Message: ----------- Merge pull request #5282 from abretaud/i18n [WIP] Global and profile-bound language configuration Compare: https://github.com/galaxyproject/galaxy/compare/43d572558a5d...12f72412abe1

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[galaxyproject/galaxy] 77bcca: Python3: make encoded id JSON-serializable
by GitHub 07 Feb '18

07 Feb '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 77bcca49a393ab4a181efae7c55fc06ee7494543 https://github.com/galaxyproject/galaxy/commit/77bcca49a393ab4a181efae7c55f… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-02-05 (Mon, 05 Feb 2018) Changed paths: M lib/galaxy/web/security/__init__.py Log Message: ----------- Python3: make encoded id JSON-serializable Fix the following traceback when visiting the Galaxy homepage: ``` Error - <class 'TypeError'>: b'f5cd946f78fsbc0d' is not JSON serializable URL: http://127.0.0.1:8080/ File 'lib/galaxy/web/framework/middleware/error.py', line 157 in __call__ app_iter = self.application(environ, sr_checker) File '/usr/users/ga002/soranzon/software/nsoranzo_galaxy/.venv3/lib/python3.4/site-packages/paste/recursive.py', line 85 in __call__ return self.application(environ, start_response) File '/usr/users/ga002/soranzon/software/nsoranzo_galaxy/.venv3/lib/python3.4/site-packages/paste/httpexceptions.py', line 640 in __call__ return self.application(environ, start_response) File 'lib/galaxy/web/framework/base.py', line 137 in __call__ return self.handle_request(environ, start_response) File 'lib/galaxy/web/framework/base.py', line 216 in handle_request body = method(trans, **kwargs) File 'lib/galaxy/webapps/galaxy/controllers/root.py', line 112 in index return self.template(trans, 'analysis', options=js_options) File 'lib/galaxy/web/base/controller.py', line 325 in template masthead=masthead File 'lib/galaxy/web/framework/webapp.py', line 920 in fill_template return self.fill_template_mako(filename, **kwargs) File 'lib/galaxy/web/framework/webapp.py', line 934 in fill_template_mako return template.render(**data) File '/usr/users/ga002/soranzon/software/nsoranzo_galaxy/.venv3/lib/python3.4/site-packages/mako/template.py', line 445 in render return runtime._render(self, self.callable_, args, data) File '/usr/users/ga002/soranzon/software/nsoranzo_galaxy/.venv3/lib/python3.4/site-packages/mako/runtime.py', line 829 in _render **_kwargs_for_callable(callable_, data)) File '/usr/users/ga002/soranzon/software/nsoranzo_galaxy/.venv3/lib/python3.4/site-packages/mako/runtime.py', line 864 in _render_context _exec_template(inherit, lclcontext, args=args, kwargs=kwargs) File '/usr/users/ga002/soranzon/software/nsoranzo_galaxy/.venv3/lib/python3.4/site-packages/mako/runtime.py', line 890 in _exec_template callable_(context, *args, **kwargs) File '/usr/users/ga002/soranzon/software/nsoranzo_galaxy/database/compiled_templates/js-app.mako.py', line 75 in render_body __M_writer(str( h.dumps( options ) )) File 'lib/galaxy/util/json.py', line 79 in safe_dumps dumped = json.dumps(*args, allow_nan=False, **kwargs) File '/usr/lib/python3.4/json/__init__.py', line 237 in dumps **kw).encode(obj) File '/usr/lib/python3.4/json/encoder.py', line 192 in encode chunks = self.iterencode(o, _one_shot=True) File '/usr/lib/python3.4/json/encoder.py', line 250 in iterencode return _iterencode(o, 0) File '/usr/lib/python3.4/json/encoder.py', line 173 in default raise TypeError(repr(o) + " is not JSON serializable") TypeError: b'f5cd946f78fsbc0d' is not JSON serializable ``` Commit: b3ea83929fc67f656c30aed865d26a5575cc19c7 https://github.com/galaxyproject/galaxy/commit/b3ea83929fc67f656c30aed865d2… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-02-07 (Wed, 07 Feb 2018) Changed paths: M test/functional/twilltestcase.py Log Message: ----------- Unicodify the return value of TwillTestCase.last_page() inside the check_page_for_string() method. Fix the following stacktrace during ToolShed tests: ``` Traceback (most recent call last): File "/usr/lib/python2.7/unittest/case.py", line 329, in run testMethod() File "/galaxy/test/shed_functional/functional/test_1160_tool_help_images.py", line 79, in test_0010_load_tool_page self.load_display_tool_page(repository, tool_path, changeset_revision, strings_displayed=[image_path], strings_not_displayed=[]) File "/galaxy/test/shed_functional/base/twilltestcase.py", line 1122, in load_display_tool_page self.check_for_strings(strings_displayed, strings_not_displayed) File "/galaxy/test/functional/twilltestcase.py", line 39, in check_for_strings self.check_page_for_string(string) File "/galaxy/test/functional/twilltestcase.py", line 69, in check_page_for_string if page.find(patt) == -1: UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 8760: ordinal not in range(128) ``` Commit: 43d572558a5dc5747dac0a7fc824bef3af4a809a https://github.com/galaxyproject/galaxy/commit/43d572558a5dc5747dac0a7fc824… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-02-07 (Wed, 07 Feb 2018) Changed paths: M lib/galaxy/web/security/__init__.py M test/functional/twilltestcase.py Log Message: ----------- Merge pull request #5461 from nsoranzo/python3 Python3: make encoded id JSON-serializable Compare: https://github.com/galaxyproject/galaxy/compare/3a7414acaca5...43d572558a5d

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[galaxyproject/usegalaxy-playbook] 280749: Remove overall job limit for registered users on T...
by GitHub 06 Feb '18

06 Feb '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 280749a527994d64f8beb010955202196949f0d1 https://github.com/galaxyproject/usegalaxy-playbook/commit/280749a527994d64… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-02-06 (Tue, 06 Feb 2018) Changed paths: M env/test/templates/galaxy/config/job_conf.xml.j2 Log Message: ----------- Remove overall job limit for registered users on Test (Main is already set up this way) so that nagios is more useful.

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[galaxyproject/usegalaxy-playbook] 2f6b8b: Update Main to 18.01
by GitHub 06 Feb '18

06 Feb '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 2f6b8b32114f3e6c8aeba553021f04bcd691aceb https://github.com/galaxyproject/usegalaxy-playbook/commit/2f6b8b32114f3e6c… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-02-06 (Tue, 06 Feb 2018) Changed paths: M env/main/files/galaxy/galaxy_version.yml M env/main/group_vars/all.yml Log Message: ----------- Update Main to 18.01

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[galaxyproject/galaxy] d537b2: build client for release with maps
by GitHub 05 Feb '18

05 Feb '18

Branch: refs/heads/release_18.01 Home: https://github.com/galaxyproject/galaxy Commit: d537b2ac6033d831e41e1db0412fdd86d7ad9b4e https://github.com/galaxyproject/galaxy/commit/d537b2ac6033d831e41e1db0412f… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-02-05 (Mon, 05 Feb 2018) Changed paths: A static/maps/admin.toolshed.js.map A static/maps/galaxy.interactive_environments.js.map A static/maps/galaxy.js.map A static/maps/galaxy.library.js.map A static/maps/galaxy.pages.js.map A static/maps/i18n.js.map A static/maps/layout/generic-nav-view.js.map A static/maps/layout/masthead.js.map A static/maps/layout/menu.js.map A static/maps/layout/modal.js.map A static/maps/layout/page.js.map A static/maps/layout/panel.js.map A static/maps/layout/router.js.map A static/maps/layout/scratchbook.js.map A static/maps/legacy/grid/grid-model.js.map A static/maps/legacy/grid/grid-template.js.map A static/maps/legacy/grid/grid-view.js.map A static/maps/mvc/annotation.js.map A static/maps/mvc/base-mvc.js.map A static/maps/mvc/base/controlled-fetch-collection.js.map A static/maps/mvc/collection/base-creator.js.map A static/maps/mvc/collection/collection-li-edit.js.map A static/maps/mvc/collection/collection-li.js.map A static/maps/mvc/collection/collection-model.js.map A static/maps/mvc/collection/collection-view-edit.js.map A static/maps/mvc/collection/collection-view.js.map A static/maps/mvc/collection/list-collection-creator.js.map A static/maps/mvc/collection/list-of-pairs-collection-creator.js.map A static/maps/mvc/collection/pair-collection-creator.js.map A static/maps/mvc/dataset/data.js.map A static/maps/mvc/dataset/dataset-choice.js.map A static/maps/mvc/dataset/dataset-edit-attributes.js.map A static/maps/mvc/dataset/dataset-error.js.map A static/maps/mvc/dataset/dataset-li-edit.js.map A static/maps/mvc/dataset/dataset-li.js.map A static/maps/mvc/dataset/dataset-list.js.map A static/maps/mvc/dataset/dataset-model.js.map A static/maps/mvc/dataset/states.js.map A static/maps/mvc/form/form-data.js.map A static/maps/mvc/form/form-input.js.map A static/maps/mvc/form/form-parameters.js.map A static/maps/mvc/form/form-repeat.js.map A static/maps/mvc/form/form-section.js.map A static/maps/mvc/form/form-view.js.map A static/maps/mvc/form/form-wrapper.js.map A static/maps/mvc/grid/grid-model.js.map A static/maps/mvc/grid/grid-shared.js.map A static/maps/mvc/grid/grid-template.js.map A static/maps/mvc/grid/grid-view.js.map A static/maps/mvc/history/copy-dialog.js.map A static/maps/mvc/history/hda-li-edit.js.map A static/maps/mvc/history/hda-li.js.map A static/maps/mvc/history/hda-model.js.map A static/maps/mvc/history/hdca-li-edit.js.map A static/maps/mvc/history/hdca-li.js.map A static/maps/mvc/history/hdca-model.js.map A static/maps/mvc/history/history-content-model.js.map A static/maps/mvc/history/history-contents.js.map A static/maps/mvc/history/history-item-li.js.map A 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static/maps/utils/deferred.js.map A static/maps/utils/graph.js.map A static/maps/utils/levenshtein.js.map A static/maps/utils/localization.js.map A static/maps/utils/metrics-logger.js.map A static/maps/utils/natural-sort.js.map A static/maps/utils/query-string-parsing.js.map A static/maps/utils/uploadbox.js.map A static/maps/utils/utils.js.map A static/maps/viz/bbi-data-manager.js.map A static/maps/viz/circster.js.map A static/maps/viz/phyloviz.js.map A static/maps/viz/sweepster.js.map A static/maps/viz/trackster.js.map A static/maps/viz/trackster/filters.js.map A static/maps/viz/trackster/painters.js.map A static/maps/viz/trackster/slotting.js.map A static/maps/viz/trackster/tracks.js.map A static/maps/viz/trackster/util.js.map A static/maps/viz/visualization.js.map A static/maps/viz/viz_views.js.map M static/scripts/admin.toolshed.js M static/scripts/bundled/admin.bundled.js A static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js A 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static/scripts/mvc/library/library-libraryrow-view.js M static/scripts/mvc/library/library-librarytoolbar-view.js M static/scripts/mvc/library/library-model.js M static/scripts/mvc/library/library-util.js M static/scripts/mvc/list/list-item.js M static/scripts/mvc/list/list-view.js M static/scripts/mvc/tag.js M static/scripts/mvc/tool/tool-form-base.js M static/scripts/mvc/tool/tool-form-composite.js M static/scripts/mvc/tool/tool-form.js M static/scripts/mvc/tool/tool-genomespace.js M static/scripts/mvc/tool/tools.js M static/scripts/mvc/toolshed/categories-view.js M static/scripts/mvc/toolshed/repo-queue-view.js M static/scripts/mvc/toolshed/repo-status-view.js M static/scripts/mvc/toolshed/repositories-view.js M static/scripts/mvc/toolshed/repository-queue-view.js M static/scripts/mvc/toolshed/repository-view.js M static/scripts/mvc/toolshed/shed-list-view.js M static/scripts/mvc/toolshed/toolshed-model.js M static/scripts/mvc/toolshed/util.js M static/scripts/mvc/toolshed/workflows-view.js M static/scripts/mvc/tours.js M static/scripts/mvc/ui/error-modal.js M static/scripts/mvc/ui/icon-button.js M static/scripts/mvc/ui/popup-menu.js M static/scripts/mvc/ui/ui-buttons.js M static/scripts/mvc/ui/ui-color-picker.js M static/scripts/mvc/ui/ui-drilldown.js M static/scripts/mvc/ui/ui-frames.js M static/scripts/mvc/ui/ui-list.js M static/scripts/mvc/ui/ui-misc.js M static/scripts/mvc/ui/ui-modal.js M static/scripts/mvc/ui/ui-options.js M static/scripts/mvc/ui/ui-popover.js M static/scripts/mvc/ui/ui-portlet.js M static/scripts/mvc/ui/ui-select-content.js M static/scripts/mvc/ui/ui-select-default.js M static/scripts/mvc/ui/ui-select-ftp.js M static/scripts/mvc/ui/ui-select-genomespace.js M static/scripts/mvc/ui/ui-select-library.js M static/scripts/mvc/ui/ui-select.js M static/scripts/mvc/ui/ui-slider.js M static/scripts/mvc/ui/ui-table.js M static/scripts/mvc/ui/ui-tabs.js M static/scripts/mvc/ui/ui-thumbnails.js M static/scripts/mvc/upload/collection/collection-row.js M static/scripts/mvc/upload/collection/collection-view.js M static/scripts/mvc/upload/composite/composite-row.js M static/scripts/mvc/upload/composite/composite-view.js M static/scripts/mvc/upload/default/default-row.js M static/scripts/mvc/upload/default/default-view.js M static/scripts/mvc/upload/upload-button.js M static/scripts/mvc/upload/upload-extension.js M static/scripts/mvc/upload/upload-ftp.js M static/scripts/mvc/upload/upload-model.js M static/scripts/mvc/upload/upload-settings.js M static/scripts/mvc/upload/upload-view.js M static/scripts/mvc/user/user-custom-builds.js M static/scripts/mvc/user/user-model.js M static/scripts/mvc/user/user-preferences.js M static/scripts/mvc/user/user-quotameter.js M static/scripts/mvc/visualization/visualization-model.js M static/scripts/mvc/webhooks.js M static/scripts/mvc/workflow/workflow-canvas.js M static/scripts/mvc/workflow/workflow-connector.js M static/scripts/mvc/workflow/workflow-forms.js M static/scripts/mvc/workflow/workflow-icons.js M static/scripts/mvc/workflow/workflow-manager.js M static/scripts/mvc/workflow/workflow-model.js M static/scripts/mvc/workflow/workflow-node.js M static/scripts/mvc/workflow/workflow-terminals.js M static/scripts/mvc/workflow/workflow-view-data.js M static/scripts/mvc/workflow/workflow-view-node.js M static/scripts/mvc/workflow/workflow-view-terminals.js M static/scripts/mvc/workflow/workflow-view.js M static/scripts/mvc/workflow/workflow.js M static/scripts/nls/de/locale.js M static/scripts/nls/es/locale.js M static/scripts/nls/fr/locale.js M static/scripts/nls/ja/locale.js M static/scripts/nls/locale.js M static/scripts/nls/zh/locale.js M static/scripts/onload.js M static/scripts/polyfills.js M static/scripts/reports/run_stats.js M static/scripts/toolshed/groups/group-detail-view.js M static/scripts/toolshed/groups/group-list-view.js M static/scripts/toolshed/groups/group-listrow-view.js M static/scripts/toolshed/groups/group-model.js M static/scripts/toolshed/toolshed.groups.js M static/scripts/ui/autocom_tagging.js M static/scripts/ui/editable-text.js M static/scripts/ui/fa-icon-button.js M static/scripts/ui/filter-control.js M static/scripts/ui/hoverhighlight.js M static/scripts/ui/loading-indicator.js M static/scripts/ui/mode-button.js M static/scripts/ui/pagination.js M static/scripts/ui/peek-column-selector.js M static/scripts/ui/popupmenu.js M static/scripts/ui/scroll-panel.js M static/scripts/ui/search-input.js M static/scripts/utils/add-logging.js M static/scripts/utils/ajax-queue.js M static/scripts/utils/async-save-text.js M static/scripts/utils/config.js M static/scripts/utils/deferred.js M static/scripts/utils/graph.js M static/scripts/utils/levenshtein.js M static/scripts/utils/localization.js M static/scripts/utils/metrics-logger.js M static/scripts/utils/natural-sort.js M static/scripts/utils/query-string-parsing.js M static/scripts/utils/uploadbox.js M static/scripts/utils/utils.js M static/scripts/viz/bbi-data-manager.js M static/scripts/viz/circster.js M static/scripts/viz/phyloviz.js M static/scripts/viz/sweepster.js M static/scripts/viz/trackster.js M static/scripts/viz/trackster/filters.js M static/scripts/viz/trackster/painters.js M static/scripts/viz/trackster/slotting.js M static/scripts/viz/trackster/tracks.js M static/scripts/viz/trackster/util.js M static/scripts/viz/visualization.js M static/scripts/viz/viz_views.js M static/style/blue/base.css Log Message: ----------- build client for release with maps Commit: c2abd3f813bde3be116e692f49347c71164f97a2 https://github.com/galaxyproject/galaxy/commit/c2abd3f813bde3be116e692f4934… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-02-05 (Mon, 05 Feb 2018) Changed paths: A static/maps/admin.toolshed.js.map A static/maps/galaxy.interactive_environments.js.map A static/maps/galaxy.js.map A static/maps/galaxy.library.js.map A static/maps/galaxy.pages.js.map A static/maps/i18n.js.map A static/maps/layout/generic-nav-view.js.map A static/maps/layout/masthead.js.map A static/maps/layout/menu.js.map A static/maps/layout/modal.js.map A static/maps/layout/page.js.map A static/maps/layout/panel.js.map A static/maps/layout/router.js.map A static/maps/layout/scratchbook.js.map A static/maps/legacy/grid/grid-model.js.map A static/maps/legacy/grid/grid-template.js.map A static/maps/legacy/grid/grid-view.js.map A static/maps/mvc/annotation.js.map A static/maps/mvc/base-mvc.js.map A static/maps/mvc/base/controlled-fetch-collection.js.map A static/maps/mvc/collection/base-creator.js.map A static/maps/mvc/collection/collection-li-edit.js.map A static/maps/mvc/collection/collection-li.js.map A static/maps/mvc/collection/collection-model.js.map A static/maps/mvc/collection/collection-view-edit.js.map A static/maps/mvc/collection/collection-view.js.map A static/maps/mvc/collection/list-collection-creator.js.map A 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static/maps/mvc/grid/grid-view.js.map A static/maps/mvc/history/copy-dialog.js.map A static/maps/mvc/history/hda-li-edit.js.map A static/maps/mvc/history/hda-li.js.map A static/maps/mvc/history/hda-model.js.map A static/maps/mvc/history/hdca-li-edit.js.map A static/maps/mvc/history/hdca-li.js.map A static/maps/mvc/history/hdca-model.js.map A static/maps/mvc/history/history-content-model.js.map A static/maps/mvc/history/history-contents.js.map A static/maps/mvc/history/history-item-li.js.map A static/maps/mvc/history/history-list.js.map A static/maps/mvc/history/history-model.js.map A static/maps/mvc/history/history-preferences.js.map A static/maps/mvc/history/history-structure-view.js.map A static/maps/mvc/history/history-view-annotated.js.map A static/maps/mvc/history/history-view-edit-current.js.map A static/maps/mvc/history/history-view-edit.js.map A static/maps/mvc/history/history-view.js.map A static/maps/mvc/history/job-dag.js.map A static/maps/mvc/history/job-states-model.js.map 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static/scripts/ui/popupmenu.js M static/scripts/ui/scroll-panel.js M static/scripts/ui/search-input.js M static/scripts/utils/add-logging.js M static/scripts/utils/ajax-queue.js M static/scripts/utils/async-save-text.js M static/scripts/utils/config.js M static/scripts/utils/deferred.js M static/scripts/utils/graph.js M static/scripts/utils/levenshtein.js M static/scripts/utils/localization.js M static/scripts/utils/metrics-logger.js M static/scripts/utils/natural-sort.js M static/scripts/utils/query-string-parsing.js M static/scripts/utils/uploadbox.js M static/scripts/utils/utils.js M static/scripts/viz/bbi-data-manager.js M static/scripts/viz/circster.js M static/scripts/viz/phyloviz.js M static/scripts/viz/sweepster.js M static/scripts/viz/trackster.js M static/scripts/viz/trackster/filters.js M static/scripts/viz/trackster/painters.js M static/scripts/viz/trackster/slotting.js M static/scripts/viz/trackster/tracks.js M static/scripts/viz/trackster/util.js M static/scripts/viz/visualization.js M static/scripts/viz/viz_views.js M static/style/blue/base.css Log Message: ----------- Merge pull request #5395 from martenson/production-1801 [18.01] Build production client Compare: https://github.com/galaxyproject/galaxy/compare/c3ada7f16973...c2abd3f813bd

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