galaxy-commits March 2018

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[galaxyproject/galaxy] 3dec3b: Move `Extract genomic DNA 1` to list of version ga...
by GitHub 01 Mar '18

01 Mar '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 3dec3bdd21176d0fb66d7606a1e513ef244e4e86 https://github.com/galaxyproject/galaxy/commit/3dec3bdd21176d0fb66d7606a1e5… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Move `Extract genomic DNA 1` to list of version galaxy lib tools Commit: 2d132a45d9af112a9d96e6a1d58646aff1a72910 https://github.com/galaxyproject/galaxy/commit/2d132a45d9af112a9d96e6a1d586… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Merge pull request #5626 from mvdbeek/limit_extract_dna_legacy_versions [17.09] Move `Extract genomic DNA 1` to list of versioned galaxy tools requiring galaxy to be importable Commit: 87c70d844747b6d99880e495be0102fe386ccdb0 https://github.com/galaxyproject/galaxy/commit/87c70d844747b6d99880e495be01… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Merge branch 'release_17.09' into release_18.01 Conflicts: lib/galaxy/tools/__init__.py Commit: e53e90895d2e195322af65364b0fb55049ea728b https://github.com/galaxyproject/galaxy/commit/e53e90895d2e195322af65364b0f… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Merge branch 'release_18.01' into dev Compare: https://github.com/galaxyproject/galaxy/compare/740c78c734f1...e53e90895d2e

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[galaxyproject/galaxy] 3dec3b: Move `Extract genomic DNA 1` to list of version ga...
by GitHub 01 Mar '18

01 Mar '18

Branch: refs/heads/release_18.01 Home: https://github.com/galaxyproject/galaxy Commit: 3dec3bdd21176d0fb66d7606a1e513ef244e4e86 https://github.com/galaxyproject/galaxy/commit/3dec3bdd21176d0fb66d7606a1e5… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Move `Extract genomic DNA 1` to list of version galaxy lib tools Commit: 2d132a45d9af112a9d96e6a1d58646aff1a72910 https://github.com/galaxyproject/galaxy/commit/2d132a45d9af112a9d96e6a1d586… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Merge pull request #5626 from mvdbeek/limit_extract_dna_legacy_versions [17.09] Move `Extract genomic DNA 1` to list of versioned galaxy tools requiring galaxy to be importable Commit: 87c70d844747b6d99880e495be0102fe386ccdb0 https://github.com/galaxyproject/galaxy/commit/87c70d844747b6d99880e495be01… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Merge branch 'release_17.09' into release_18.01 Conflicts: lib/galaxy/tools/__init__.py Compare: https://github.com/galaxyproject/galaxy/compare/a90c3a1d3f2c...87c70d844747

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[galaxyproject/galaxy] 3dec3b: Move `Extract genomic DNA 1` to list of version ga...
by GitHub 01 Mar '18

01 Mar '18

Branch: refs/heads/release_17.09 Home: https://github.com/galaxyproject/galaxy Commit: 3dec3bdd21176d0fb66d7606a1e513ef244e4e86 https://github.com/galaxyproject/galaxy/commit/3dec3bdd21176d0fb66d7606a1e5… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Move `Extract genomic DNA 1` to list of version galaxy lib tools Commit: 2d132a45d9af112a9d96e6a1d58646aff1a72910 https://github.com/galaxyproject/galaxy/commit/2d132a45d9af112a9d96e6a1d586… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Merge pull request #5626 from mvdbeek/limit_extract_dna_legacy_versions [17.09] Move `Extract genomic DNA 1` to list of versioned galaxy tools requiring galaxy to be importable Compare: https://github.com/galaxyproject/galaxy/compare/13e72e84c523...2d132a45d9af

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[galaxyproject/galaxy] e594b2: fix for cases where panel elements have to_dict wi...
by GitHub 01 Mar '18

01 Mar '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: e594b2b257e62622f686a7f5244a342e416ceb8e https://github.com/galaxyproject/galaxy/commit/e594b2b257e62622f686a7f5244a… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-02-27 (Tue, 27 Feb 2018) Changed paths: M lib/galaxy/tools/toolbox/base.py M lib/galaxy/tools/toolbox/panel.py Log Message: ----------- fix for cases where panel elements have to_dict with different signature we want to only cache Tools anyways, so this fixes other possible bug where section/label etc would have same id as a Tool change the detection of Tool object to avoid circular import errors Also use cache for dictifying sections, we should gain more speed from that. Commit: e9aad5ea965edb2853631971634493bd82679c75 https://github.com/galaxyproject/galaxy/commit/e9aad5ea965edb28536319716344… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-02-28 (Wed, 28 Feb 2018) Changed paths: M lib/galaxy/tools/toolbox/base.py M lib/galaxy/tools/toolbox/panel.py Log Message: ----------- pass the toolbox obj to make sure cache is available Commit: 713bf6fa8e0274bd55571a91842ba593c68fe03e https://github.com/galaxyproject/galaxy/commit/713bf6fa8e0274bd55571a91842b… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-02-28 (Wed, 28 Feb 2018) Changed paths: M lib/galaxy/tools/toolbox/base.py M lib/galaxy/tools/toolbox/panel.py Log Message: ----------- enable cache for tools that inherit from Tool Commit: 740c78c734f14f0679c975057fa9fd414dfa4e87 https://github.com/galaxyproject/galaxy/commit/740c78c734f14f0679c975057fa9… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M lib/galaxy/tools/toolbox/base.py M lib/galaxy/tools/toolbox/panel.py Log Message: ----------- Merge pull request #5616 from martenson/improve-tb-caching toolbox to_dict cache fix and improvements Compare: https://github.com/galaxyproject/galaxy/compare/cbade98a233d...740c78c734f1

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galaxy-commits March 2018