Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: f99f8667bcfceea21101d0690d2ba6f5630d34cf
https://github.com/galaxyproject/galaxy/commit/f99f8667bcfceea21101d0690d2b…
Author: Katrin Leinweber <kalei(a)posteo.de>
Date: 2018-05-30 (Wed, 30 May 2018)
Changed paths:
M client/galaxy/scripts/components/Citations.vue
M doc/source/admin/galaxy_options.rst
M lib/galaxy/datatypes/test/example.iqtree
M lib/galaxy/managers/citations.py
M lib/galaxy/tools/xsd/galaxy.xsd
M lib/galaxy/webapps/galaxy/config_schema.yml
M lib/galaxy/webapps/tool_shed/config_schema.yml
M test/unit/config/1607_root_filters/config/galaxy.ini
M test/unit/config/1607_root_samples/config/galaxy.ini
M tools/sr_mapping/bfast_wrapper.xml
Log Message:
-----------
Hyperlink DOIs against preferred resolver
Commit: a79d6fae43be20dbf79d57e8067a022f877b57be
https://github.com/galaxyproject/galaxy/commit/a79d6fae43be20dbf79d57e8067a…
Author: Dannon <dannon.baker(a)gmail.com>
Date: 2018-05-30 (Wed, 30 May 2018)
Changed paths:
M client/galaxy/scripts/components/Citations.vue
M doc/source/admin/galaxy_options.rst
M lib/galaxy/datatypes/test/example.iqtree
M lib/galaxy/managers/citations.py
M lib/galaxy/tools/xsd/galaxy.xsd
M lib/galaxy/webapps/galaxy/config_schema.yml
M lib/galaxy/webapps/tool_shed/config_schema.yml
M test/unit/config/1607_root_filters/config/galaxy.ini
M test/unit/config/1607_root_samples/config/galaxy.ini
M tools/sr_mapping/bfast_wrapper.xml
Log Message:
-----------
Merge pull request #6244 from katrinleinweber/resolve-DOIs-securely
Hyperlink DOIs against preferred resolver
Compare: https://github.com/galaxyproject/galaxy/compare/8fcc9332448a...a79d6fae43be
**NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 3b27d249b2876a8e88691dad2fe42213f8943893
https://github.com/galaxyproject/galaxy/commit/3b27d249b2876a8e88691dad2fe4…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-29 (Tue, 29 May 2018)
Changed paths:
M client/galaxy/scripts/apps/extended.js
R client/galaxy/scripts/mvc/history/history-structure-view.js
M lib/galaxy/webapps/galaxy/controllers/history.py
R templates/webapps/galaxy/history/structure.mako
Log Message:
-----------
Strip busted history structure view -- we're goign to start from scratch here
Commit: 8d9a21c4e9eeab4f1b947b66688658941c482340
https://github.com/galaxyproject/galaxy/commit/8d9a21c4e9eeab4f1b947b666886…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-29 (Tue, 29 May 2018)
Changed paths:
M lib/galaxy/webapps/galaxy/controllers/history.py
Log Message:
-----------
Remove unused import.
Commit: 8fcc9332448add1e55fd6b5831da80b336d63078
https://github.com/galaxyproject/galaxy/commit/8fcc9332448add1e55fd6b5831da…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-05-30 (Wed, 30 May 2018)
Changed paths:
M client/galaxy/scripts/apps/extended.js
R client/galaxy/scripts/mvc/history/history-structure-view.js
M lib/galaxy/webapps/galaxy/controllers/history.py
R templates/webapps/galaxy/history/structure.mako
Log Message:
-----------
Merge pull request #6241 from dannon/history_structure_cleanup
Strip legacy history structure view
Compare: https://github.com/galaxyproject/galaxy/compare/9b4697d3eda8...8fcc9332448a
**NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
Branch: refs/heads/master
Home: https://github.com/galaxyproject/galaxy
Commit: 6702fa45cda22b3cc2d820d1075f2b02ae65abe5
https://github.com/galaxyproject/galaxy/commit/6702fa45cda22b3cc2d820d1075f…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-05-22 (Tue, 22 May 2018)
Changed paths:
M lib/galaxy/web/framework/helpers/grids.py
Log Message:
-----------
Remove defunct sharing column link
Commit: 02feb1735086c8aca9feff740139bdebc1bc91d5
https://github.com/galaxyproject/galaxy/commit/02feb1735086c8aca9feff740139…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-05-25 (Fri, 25 May 2018)
Changed paths:
M lib/galaxy/tools/parser/output_objects.py
Log Message:
-----------
Fix broken collection_type_source tool and test.
The tool wouldn't load after 8af243c176fd9c261277327750aaa71806add4ef and that caused the relevant tests to "SKIP" instead of failing outright.
./run_tests.sh -api test/api/test_tools.py:ToolsTestCase.test_map_over_collection_type_source
Commit: 221897be04bff63a0ca91646bbb1d82d4cf3ea84
https://github.com/galaxyproject/galaxy/commit/221897be04bff63a0ca91646bbb1…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-05-26 (Sat, 26 May 2018)
Changed paths:
M lib/galaxy/web/framework/helpers/grids.py
Log Message:
-----------
Merge pull request #6177 from guerler/remove_defunct_link
[18.05] Remove defunct sharing column link
Commit: c9641e1f13847fc7713a359076597217bf7c664a
https://github.com/galaxyproject/galaxy/commit/c9641e1f13847fc7713a35907659…
Author: Björn Grüning <bjoern(a)gruenings.eu>
Date: 2018-05-27 (Sun, 27 May 2018)
Changed paths:
M lib/galaxy/tools/parser/output_objects.py
Log Message:
-----------
Merge pull request #6227 from jmchilton/collection_type_source_regression
[18.05] Fix broken collection_type_source tool and test.
Compare: https://github.com/galaxyproject/galaxy/compare/e91f91b5f217...c9641e1f1384
**NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 6702fa45cda22b3cc2d820d1075f2b02ae65abe5
https://github.com/galaxyproject/galaxy/commit/6702fa45cda22b3cc2d820d1075f…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-05-22 (Tue, 22 May 2018)
Changed paths:
M lib/galaxy/web/framework/helpers/grids.py
Log Message:
-----------
Remove defunct sharing column link
Commit: 02feb1735086c8aca9feff740139bdebc1bc91d5
https://github.com/galaxyproject/galaxy/commit/02feb1735086c8aca9feff740139…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-05-25 (Fri, 25 May 2018)
Changed paths:
M lib/galaxy/tools/parser/output_objects.py
Log Message:
-----------
Fix broken collection_type_source tool and test.
The tool wouldn't load after 8af243c176fd9c261277327750aaa71806add4ef and that caused the relevant tests to "SKIP" instead of failing outright.
./run_tests.sh -api test/api/test_tools.py:ToolsTestCase.test_map_over_collection_type_source
Commit: 221897be04bff63a0ca91646bbb1d82d4cf3ea84
https://github.com/galaxyproject/galaxy/commit/221897be04bff63a0ca91646bbb1…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-05-26 (Sat, 26 May 2018)
Changed paths:
M lib/galaxy/web/framework/helpers/grids.py
Log Message:
-----------
Merge pull request #6177 from guerler/remove_defunct_link
[18.05] Remove defunct sharing column link
Commit: c9641e1f13847fc7713a359076597217bf7c664a
https://github.com/galaxyproject/galaxy/commit/c9641e1f13847fc7713a35907659…
Author: Björn Grüning <bjoern(a)gruenings.eu>
Date: 2018-05-27 (Sun, 27 May 2018)
Changed paths:
M lib/galaxy/tools/parser/output_objects.py
Log Message:
-----------
Merge pull request #6227 from jmchilton/collection_type_source_regression
[18.05] Fix broken collection_type_source tool and test.
Commit: d4cb7c614ecb2cc3193de89a87a1fe9661975d21
https://github.com/galaxyproject/galaxy/commit/d4cb7c614ecb2cc3193de89a87a1…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-28 (Mon, 28 May 2018)
Changed paths:
M lib/galaxy/tools/parser/output_objects.py
M lib/galaxy/web/framework/helpers/grids.py
Log Message:
-----------
Merge remote-tracking branch 'upstream/release_18.05' into dev
Compare: https://github.com/galaxyproject/galaxy/compare/820712144000...d4cb7c614ecb
**NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.