June 2018 - galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] 6cf034: Some style cleanup.
by GitHub 24 Jun '18

24 Jun '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 6cf034ef6f6c67c6464cd85d7adc5f2ecaaa9452 https://github.com/galaxyproject/galaxy/commit/6cf034ef6f6c67c6464cd85d7adc… Author: James Taylor <james(a)jamestaylor.org> Date: 2018-06-22 (Fri, 22 Jun 2018) Changed paths: A client/galaxy/docs/galaxy-buttons.md A client/galaxy/docs/galaxy-forms.md A client/galaxy/docs/galaxy-masthead.md A client/galaxy/docs/galaxy-menus.md A client/galaxy/docs/galaxy-messages.md A client/galaxy/docs/galaxy-panels.md R client/galaxy/docs/galaxy-styles.md A client/galaxy/docs/galaxy-tables.md A client/galaxy/docs/galaxy-tabs.md M client/galaxy/scripts/layout/masthead.js M client/galaxy/scripts/layout/page.js M client/galaxy/scripts/mvc/tool/tools.js M client/galaxy/style/scss/base.scss M client/galaxy/style/scss/galaxy_bootstrap/variables.scss M client/galaxy/style/scss/galaxy_variables.scss M client/galaxy/style/scss/theme/blue.scss M client/galaxy/style/scss/upload.scss M client/package.json M client/styleguide.config.js M client/yarn.lock M templates/base/base_panels.mako M templates/webapps/galaxy/galaxy.panels.mako M templates/webapps/galaxy/workflow/editor.mako Log Message: ----------- Some style cleanup. - Split the Galaxy components of the styleguide into multiple documents to make things more manageable and get a better table of contents. Add some additional examples for masthead and panels. - Use flexbox for layout of panels and masthead. This eliminates a lot of absolute positioning from the panels and allows the masthead and panel headers to layour correctly regardles of height. - Unify the set of gray levels we are using (to those from Bootstrap 4) - Add some additional SCSS variables and (small amount of) general cleanup to styles. Commit: db3739fcfe8217493f648d3e06390071b12fa217 https://github.com/galaxyproject/galaxy/commit/db3739fcfe8217493f648d3e0639… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-06-22 (Fri, 22 Jun 2018) Changed paths: M client/galaxy/style/scss/base.scss Log Message: ----------- Position masthead/scratchbook sub icons Commit: f16da195c58a9ac157c85db4369bc28a5089fd43 https://github.com/galaxyproject/galaxy/commit/f16da195c58a9ac157c85db4369b… Author: James Taylor <james(a)jamestaylor.org> Date: 2018-06-23 (Sat, 23 Jun 2018) Changed paths: M client/galaxy/style/scss/base.scss Log Message: ----------- Merge pull request #6 from guerler/ui-flex-scratchbook Fixes the position of small sub-icons in masthead Commit: fbb032f4e1b0a6239ced4e7753a0f8156abf3e85 https://github.com/galaxyproject/galaxy/commit/fbb032f4e1b0a6239ced4e7753a0… Author: Dannon <dannon.baker(a)gmail.com> Date: 2018-06-24 (Sun, 24 Jun 2018) Changed paths: A client/galaxy/docs/galaxy-buttons.md A client/galaxy/docs/galaxy-forms.md A client/galaxy/docs/galaxy-masthead.md A client/galaxy/docs/galaxy-menus.md A client/galaxy/docs/galaxy-messages.md A client/galaxy/docs/galaxy-panels.md R client/galaxy/docs/galaxy-styles.md A client/galaxy/docs/galaxy-tables.md A client/galaxy/docs/galaxy-tabs.md M client/galaxy/scripts/layout/masthead.js M client/galaxy/scripts/layout/page.js M client/galaxy/scripts/mvc/tool/tools.js M client/galaxy/style/scss/base.scss M client/galaxy/style/scss/galaxy_bootstrap/variables.scss M client/galaxy/style/scss/galaxy_variables.scss M client/galaxy/style/scss/theme/blue.scss M client/galaxy/style/scss/upload.scss M client/package.json M client/styleguide.config.js M client/yarn.lock M templates/base/base_panels.mako M templates/webapps/galaxy/galaxy.panels.mako M templates/webapps/galaxy/workflow/editor.mako Log Message: ----------- Merge pull request #6386 from jxtx/ui-flex Some style cleanup. Compare: https://github.com/galaxyproject/galaxy/compare/31e78461bd1e...fbb032f4e1b0 **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/ansible-galaxy]
by GitHub 23 Jun '18

23 Jun '18

Branch: refs/tags/0.7.6 Home: https://github.com/galaxyproject/ansible-galaxy **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/ansible-galaxy] 8417a5: Switch to Ansible 2.4 dynamic task includes to avo...
by GitHub 23 Jun '18

23 Jun '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/ansible-galaxy Commit: 8417a5bf92da86c1fd1d8e19dce86c9eaf675701 https://github.com/galaxyproject/ansible-galaxy/commit/8417a5bf92da86c1fd1d… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-06-22 (Fri, 22 Jun 2018) Changed paths: M meta/main.yml M tasks/dependencies.yml M tasks/download.yml M tasks/main.yml Log Message: ----------- Switch to Ansible 2.4 dynamic task includes to avoid tons of skips when running the role in pieces. Commit: 719fa075397f562fb7c14bdb2f71d911c24fa527 https://github.com/galaxyproject/ansible-galaxy/commit/719fa075397f562fb7c1… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-06-22 (Fri, 22 Jun 2018) Changed paths: A .gitignore M README.md M defaults/main.yml A filter_plugins/uwsgi_yaml.py M tasks/clone.yml M tasks/errordocs.yml M tasks/static_setup.yml M templates/galaxy.ini.j2 A templates/galaxy.yml.j2 Log Message: ----------- Support for YAML galaxy config Commit: b3a7689137fedfc50d101febd9896545125d71cb https://github.com/galaxyproject/ansible-galaxy/commit/b3a7689137fedfc50d10… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-06-22 (Fri, 22 Jun 2018) Changed paths: M README.md Log Message: ----------- Clarify the uWSGI YAML syntax and provide an example Commit: b69cc10a46132de4dff6172ab112bf2192aad740 https://github.com/galaxyproject/ansible-galaxy/commit/b69cc10a46132de4dff6… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-06-22 (Fri, 22 Jun 2018) Changed paths: M README.md Log Message: ----------- Give an example of starting job handler mules Commit: fa0df02a3eaf6399392a9ae22bf0913344ee6ebe https://github.com/galaxyproject/ansible-galaxy/commit/fa0df02a3eaf6399392a… Author: Marius van den Beek <m.vandenbeek(a)gmail.com> Date: 2018-06-23 (Sat, 23 Jun 2018) Changed paths: A .gitignore M README.md M defaults/main.yml A filter_plugins/uwsgi_yaml.py M meta/main.yml M tasks/clone.yml M tasks/dependencies.yml M tasks/download.yml M tasks/errordocs.yml M tasks/main.yml M tasks/static_setup.yml M templates/galaxy.ini.j2 A templates/galaxy.yml.j2 Log Message: ----------- Merge pull request #28 from galaxyproject/yaml-uwsgi uWSGI/Galaxy YAML config support Compare: https://github.com/galaxyproject/ansible-galaxy/compare/a8a01bb5fe0d...fa0d… **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] c6403a: Fix logging bug.
by GitHub 22 Jun '18

22 Jun '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: c6403acd0f18196c0453a90fe89ccf861d7a28d6 https://github.com/galaxyproject/galaxy/commit/c6403acd0f18196c0453a90fe89c… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-06-20 (Wed, 20 Jun 2018) Changed paths: M lib/galaxy/tools/parameters/output_collect.py Log Message: ----------- Fix logging bug. Commit: 6d5be41b320510d6e2d163399a3a6e30d6f9bda0 https://github.com/galaxyproject/galaxy/commit/6d5be41b320510d6e2d163399a3a… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-06-20 (Wed, 20 Jun 2018) Changed paths: M lib/galaxy/tools/parameters/output_collect.py Log Message: ----------- Merge pull request #6366 from jmchilton/job_log_bug [18.05] Fix small bug in logging output name in job finish. Commit: 572f38d1fb47e914ad10766007c855786e1643a2 https://github.com/galaxyproject/galaxy/commit/572f38d1fb47e914ad10766007c8… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-06-21 (Thu, 21 Jun 2018) Changed paths: M scripts/grt/export.py Log Message: ----------- move the sanitization to the try/except block as it may fail (and it did, on Main) Commit: d28ab2a4f31b363c236a02a535cc43ab049190ca https://github.com/galaxyproject/galaxy/commit/d28ab2a4f31b363c236a02a535cc… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-06-21 (Thu, 21 Jun 2018) Changed paths: M scripts/grt/export.py Log Message: ----------- Merge pull request #6377 from martenson/catch-sanitization-faults [18.05] Catch sanitization faults Commit: 9967639bac92eb3f7103794663f41b88f11baa9c https://github.com/galaxyproject/galaxy/commit/9967639bac92eb3f7103794663f4… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-06-22 (Fri, 22 Jun 2018) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Comma-separate tool names in missing tools error message Commit: 22d383c39842e0a0198cf2d37ad3832ea1838769 https://github.com/galaxyproject/galaxy/commit/22d383c39842e0a0198cf2d37ad3… Author: Dannon <dannon.baker(a)gmail.com> Date: 2018-06-22 (Fri, 22 Jun 2018) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Merge pull request #6378 from guerler/commaseperror [18.05] Comma-separate tool names in missing tools error message Commit: fa2b6baef71984c0559c53ff5750d1fe9b77163e https://github.com/galaxyproject/galaxy/commit/fa2b6baef71984c0559c53ff5750… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-06-22 (Fri, 22 Jun 2018) Changed paths: M config/datatypes_conf.xml.sample A lib/galaxy/datatypes/converters/bam_to_bai.xml Log Message: ----------- Revert "Remove bam to bai converter" This reverts commit 7e2727bc0a74868198e7e457f99df3d1e39f1ddb. Commit: 5f24794efdad757b77c75c3aa111da7a11c5bb47 https://github.com/galaxyproject/galaxy/commit/5f24794efdad757b77c75c3aa111… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2018-06-22 (Fri, 22 Jun 2018) Changed paths: M config/datatypes_conf.xml.sample Log Message: ----------- Add basic .bai datatype Commit: 36706e9eb38728c91c1da2a4cf66ff49f3f44d72 https://github.com/galaxyproject/galaxy/commit/36706e9eb38728c91c1da2a4cf66… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-06-22 (Fri, 22 Jun 2018) Changed paths: M config/datatypes_conf.xml.sample A lib/galaxy/datatypes/converters/bam_to_bai.xml Log Message: ----------- Merge pull request #6385 from dannon/revert-baiconverter-removal [18.01] Revert "Remove bam to bai converter" Commit: e0c269291a20ae3a01a24bae930012baba3bb10c https://github.com/galaxyproject/galaxy/commit/e0c269291a20ae3a01a24bae9300… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-06-23 (Sat, 23 Jun 2018) Changed paths: M config/datatypes_conf.xml.sample A lib/galaxy/datatypes/converters/bam_to_bai.xml Log Message: ----------- Merge branch 'release_18.01' into release_18.05 Commit: 31e78461bd1e61ca8cc3dcdf0b6e08500b8ee2f1 https://github.com/galaxyproject/galaxy/commit/31e78461bd1e61ca8cc3dcdf0b6e… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-06-23 (Sat, 23 Jun 2018) Changed paths: M config/datatypes_conf.xml.sample A lib/galaxy/datatypes/converters/bam_to_bai.xml M lib/galaxy/managers/workflows.py M lib/galaxy/tools/parameters/output_collect.py M scripts/grt/export.py Log Message: ----------- Merge branch 'release_18.05' into dev Compare: https://github.com/galaxyproject/galaxy/compare/04b69d399b70...31e78461bd1e **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] fa2b6b: Revert "Remove bam to bai converter"
by GitHub 22 Jun '18

22 Jun '18

Branch: refs/heads/release_18.05 Home: https://github.com/galaxyproject/galaxy Commit: fa2b6baef71984c0559c53ff5750d1fe9b77163e https://github.com/galaxyproject/galaxy/commit/fa2b6baef71984c0559c53ff5750… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-06-22 (Fri, 22 Jun 2018) Changed paths: M config/datatypes_conf.xml.sample A lib/galaxy/datatypes/converters/bam_to_bai.xml Log Message: ----------- Revert "Remove bam to bai converter" This reverts commit 7e2727bc0a74868198e7e457f99df3d1e39f1ddb. Commit: 5f24794efdad757b77c75c3aa111da7a11c5bb47 https://github.com/galaxyproject/galaxy/commit/5f24794efdad757b77c75c3aa111… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2018-06-22 (Fri, 22 Jun 2018) Changed paths: M config/datatypes_conf.xml.sample Log Message: ----------- Add basic .bai datatype Commit: 36706e9eb38728c91c1da2a4cf66ff49f3f44d72 https://github.com/galaxyproject/galaxy/commit/36706e9eb38728c91c1da2a4cf66… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-06-22 (Fri, 22 Jun 2018) Changed paths: M config/datatypes_conf.xml.sample A lib/galaxy/datatypes/converters/bam_to_bai.xml Log Message: ----------- Merge pull request #6385 from dannon/revert-baiconverter-removal [18.01] Revert "Remove bam to bai converter" Commit: e0c269291a20ae3a01a24bae930012baba3bb10c https://github.com/galaxyproject/galaxy/commit/e0c269291a20ae3a01a24bae9300… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-06-23 (Sat, 23 Jun 2018) Changed paths: M config/datatypes_conf.xml.sample A lib/galaxy/datatypes/converters/bam_to_bai.xml Log Message: ----------- Merge branch 'release_18.01' into release_18.05 Compare: https://github.com/galaxyproject/galaxy/compare/22d383c39842...e0c269291a20 **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] a701a7: More correct, more efficient collection operations...
by GitHub 22 Jun '18

22 Jun '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: a701a718a0c7675f21a063b225aa31cc54a0d4b4 https://github.com/galaxyproject/galaxy/commit/a701a718a0c7675f21a063b225aa… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-06-22 (Fri, 22 Jun 2018) Changed paths: M lib/galaxy/model/__init__.py M lib/galaxy/model/metadata.py M lib/galaxy/tools/__init__.py Log Message: ----------- More correct, more efficient collection operations. We were copying datasets and not assigning them new HIDs in some cases (the newer collection operations apply_rules, tag_from_file were doing the right thing here but it looks like we didn't go back and fix older operations). With the uniform handling of dataset copying in place - I used the much more efficient history.add_datasets instead of history.add_dataset. This also optimizes the actual HDA copying by eliminating some extra flushes. hda.copy() would flush to get an HDA before copying metadata but this is only needed if there are FileParameter metadata types (e.g. bams) so I made that flush conditional as well as the final one. So for most datatypes - this eliminates two extra flushes per dataset copied. Rebased with fix for issue pointed out by @nsoranzo - cleaned up _add_datasets_to_history to just consume values directly. Using itervalues since these methods have performance issues and these lists can be quite large. Commit: db5b368668265a5fcbd147d9db76cc64156bb6f7 https://github.com/galaxyproject/galaxy/commit/db5b368668265a5fcbd147d9db76… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2018-06-22 (Fri, 22 Jun 2018) Changed paths: M test/api/test_tools.py Log Message: ----------- Don't rely on the order of history contents in test_map_over_collection_structured_like Commit: a10aab8f4f59d12c0d97fd45f1625576287e4a48 https://github.com/galaxyproject/galaxy/commit/a10aab8f4f59d12c0d97fd45f162… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-06-22 (Fri, 22 Jun 2018) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Remove copy-paste mistakes. Commit: db036c6f51e53b537d6b88e872c2ecae74b72b44 https://github.com/galaxyproject/galaxy/commit/db036c6f51e53b537d6b88e872c2… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-06-22 (Fri, 22 Jun 2018) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Another typo fix. Commit: 04b69d399b708aaab5b4166acfae89924cf8af7e https://github.com/galaxyproject/galaxy/commit/04b69d399b708aaab5b4166acfae… Author: Dannon <dannon.baker(a)gmail.com> Date: 2018-06-22 (Fri, 22 Jun 2018) Changed paths: M lib/galaxy/model/__init__.py M lib/galaxy/model/metadata.py M lib/galaxy/tools/__init__.py M test/api/test_tools.py Log Message: ----------- Merge pull request #6370 from jmchilton/collection_operations_opt More correct, more efficient collection operations. Compare: https://github.com/galaxyproject/galaxy/compare/704f956306bb...04b69d399b70 **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] 6815ad: change a file read to use with statement
by GitHub 22 Jun '18

22 Jun '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 6815ad69f4e5e7cf5ce8456d60a2325a682e52f6 https://github.com/galaxyproject/galaxy/commit/6815ad69f4e5e7cf5ce8456d60a2… Author: Qiang Gu <guqiang01(a)gmail.com> Date: 2018-06-22 (Fri, 22 Jun 2018) Changed paths: M lib/galaxy/tools/parameters/basic.py Log Message: ----------- change a file read to use with statement Commit: 704f956306bb8a53e8697fac1ca536e53d2c1713 https://github.com/galaxyproject/galaxy/commit/704f956306bb8a53e8697fac1ca5… Author: Dannon <dannon.baker(a)gmail.com> Date: 2018-06-22 (Fri, 22 Jun 2018) Changed paths: M lib/galaxy/tools/parameters/basic.py Log Message: ----------- Merge pull request #6388 from qiagu/data_column_1 change a file read to use with statement Compare: https://github.com/galaxyproject/galaxy/compare/d64bae64580e...704f956306bb **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] fa2b6b: Revert "Remove bam to bai converter"
by GitHub 22 Jun '18

22 Jun '18

Branch: refs/heads/release_18.01 Home: https://github.com/galaxyproject/galaxy Commit: fa2b6baef71984c0559c53ff5750d1fe9b77163e https://github.com/galaxyproject/galaxy/commit/fa2b6baef71984c0559c53ff5750… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-06-22 (Fri, 22 Jun 2018) Changed paths: M config/datatypes_conf.xml.sample A lib/galaxy/datatypes/converters/bam_to_bai.xml Log Message: ----------- Revert "Remove bam to bai converter" This reverts commit 7e2727bc0a74868198e7e457f99df3d1e39f1ddb. Commit: 5f24794efdad757b77c75c3aa111da7a11c5bb47 https://github.com/galaxyproject/galaxy/commit/5f24794efdad757b77c75c3aa111… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2018-06-22 (Fri, 22 Jun 2018) Changed paths: M config/datatypes_conf.xml.sample Log Message: ----------- Add basic .bai datatype Commit: 36706e9eb38728c91c1da2a4cf66ff49f3f44d72 https://github.com/galaxyproject/galaxy/commit/36706e9eb38728c91c1da2a4cf66… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-06-22 (Fri, 22 Jun 2018) Changed paths: M config/datatypes_conf.xml.sample A lib/galaxy/datatypes/converters/bam_to_bai.xml Log Message: ----------- Merge pull request #6385 from dannon/revert-baiconverter-removal [18.01] Revert "Remove bam to bai converter" Compare: https://github.com/galaxyproject/galaxy/compare/48fafa8096fd...36706e9eb387 **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/ansible-galaxy] b69cc1: Give an example of starting job handler mules
by GitHub 22 Jun '18

22 Jun '18

Branch: refs/heads/yaml-uwsgi Home: https://github.com/galaxyproject/ansible-galaxy Commit: b69cc10a46132de4dff6172ab112bf2192aad740 https://github.com/galaxyproject/ansible-galaxy/commit/b69cc10a46132de4dff6… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-06-22 (Fri, 22 Jun 2018) Changed paths: M README.md Log Message: ----------- Give an example of starting job handler mules **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/ansible-galaxy] b3a768: Clarify the uWSGI YAML syntax and provide an examp...
by GitHub 22 Jun '18

22 Jun '18

Branch: refs/heads/yaml-uwsgi Home: https://github.com/galaxyproject/ansible-galaxy Commit: b3a7689137fedfc50d101febd9896545125d71cb https://github.com/galaxyproject/ansible-galaxy/commit/b3a7689137fedfc50d10… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-06-22 (Fri, 22 Jun 2018) Changed paths: M README.md Log Message: ----------- Clarify the uWSGI YAML syntax and provide an example **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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