Branch: refs/heads/master
Home: https://github.com/galaxyproject/infrastructure-playbook
Commit: 9f4837a12fdbcfe9303d9bd88afc67f475b688e3
https://github.com/galaxyproject/infrastructure-playbook/commit/9f4837a12fd…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2018-06-13 (Wed, 13 Jun 2018)
Changed paths:
A env/jscommon/group_vars/all/vars.yml
A env/jscommon/group_vars/all/vault.yml
M env/jscommon/group_vars/controllers.yml
M env/jscommon/group_vars/slurmclients/vars.yml
A env/jsiu/group_vars/all/common_vars.yml
A env/jsiu/group_vars/all/common_vault.yml
M env/jsiu/group_vars/all/vars.yml
M env/jsiu/group_vars/all/vault.yml
A env/jsiu/group_vars/controllers.yml
R env/jsiu/group_vars/controllers.yml
M roles/slurmscale/files/group_vars/all/cluster.yml
M roles/slurmscale/templates/group_vars/all/cloud.yml.j2
Log Message:
-----------
Deduplicate
**NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 81864e9713e63b3478a3e8ec8ed672516b2c6853
https://github.com/galaxyproject/galaxy/commit/81864e9713e63b3478a3e8ec8ed6…
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2018-06-13 (Wed, 13 Jun 2018)
Changed paths:
M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt
Log Message:
-----------
Update dependencies to versions with Python3 manylinux wheels on PyPI
Commit: d66a63012af8f538572458650d47801a5d2cd396
https://github.com/galaxyproject/galaxy/commit/d66a63012af8f538572458650d47…
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2018-06-13 (Wed, 13 Jun 2018)
Changed paths:
M config/galaxy.yml.sample
M config/tool_shed.yml.sample
M doc/source/admin/galaxy_options.rst
M lib/galaxy/datatypes/display_applications/util.py
M lib/galaxy/dependencies/pipfiles/default/Pipfile
M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt
M lib/galaxy/dependencies/pipfiles/flake8/Pipfile.lock
M lib/galaxy/web/security/__init__.py
M lib/galaxy/webapps/galaxy/config_schema.yml
M scripts/api/common.py
M test/unit/test_security_helper.py
M test/unit/unittest_utils/galaxy_mock.py
Log Message:
-----------
Replace unmaintained pycrypto dependency with pycryptodome
Minimum secret key length for Blowfish was increased from 4 to 5 bytes.
First argument to Blowfish.new() must be a bytestring, and the `mode`
argument is no more optional.
Remove unused `encode_id` function from `scripts/api/common.py` .
Documentation updated, then rebuilt with `make config-rebuild` .
Commit: 39b70d7193c223e4013391afcb90cc932f7ac650
https://github.com/galaxyproject/galaxy/commit/39b70d7193c223e4013391afcb90…
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2018-06-13 (Wed, 13 Jun 2018)
Changed paths:
M lib/tool_shed/util/common_util.py
M lib/tool_shed/util/encoding_util.py
Log Message:
-----------
Python3 Unicode/binary fixes
Commit: cffeb6edc8b72534385d6aa5e978d25cb20b5479
https://github.com/galaxyproject/galaxy/commit/cffeb6edc8b72534385d6aa5e978…
Author: mvdbeek <m.vandenbeek(a)gmail.com>
Date: 2018-06-13 (Wed, 13 Jun 2018)
Changed paths:
M lib/tool_shed/util/hg_util.py
Log Message:
-----------
Move mercurial imports inside the functions that use them
Because Galaxy under Python3 would fail otherwise.
Commit: 6120183182bf643b6abb995283c7798da71f0211
https://github.com/galaxyproject/galaxy/commit/6120183182bf643b6abb995283c7…
Author: mvdbeek <m.vandenbeek(a)gmail.com>
Date: 2018-06-13 (Wed, 13 Jun 2018)
Changed paths:
M scripts/check_python.py
Log Message:
-----------
Allow Python 3 if in a virtualenv
Commit: 594daa85bf5de0acfb0a76aeea8cb55d7aa4684a
https://github.com/galaxyproject/galaxy/commit/594daa85bf5de0acfb0a76aeea8c…
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2018-06-13 (Wed, 13 Jun 2018)
Changed paths:
M .travis.yml
M tox.ini
Log Message:
-----------
Add py34-first_startup to Travis and default tox tests.
Commit: f8bc0656f9cf5336cac667b1be46ad2bb5bfb7ff
https://github.com/galaxyproject/galaxy/commit/f8bc0656f9cf5336cac667b1be46…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-06-13 (Wed, 13 Jun 2018)
Changed paths:
M .travis.yml
M config/galaxy.yml.sample
M config/tool_shed.yml.sample
M doc/source/admin/galaxy_options.rst
M lib/galaxy/datatypes/display_applications/util.py
M lib/galaxy/dependencies/pipfiles/default/Pipfile
M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt
M lib/galaxy/dependencies/pipfiles/flake8/Pipfile.lock
M lib/galaxy/web/security/__init__.py
M lib/galaxy/webapps/galaxy/config_schema.yml
M lib/tool_shed/util/common_util.py
M lib/tool_shed/util/encoding_util.py
M lib/tool_shed/util/hg_util.py
M scripts/api/common.py
M scripts/check_python.py
M test/unit/test_security_helper.py
M test/unit/unittest_utils/galaxy_mock.py
M tox.ini
Log Message:
-----------
Merge pull request #6325 from mvdbeek/py3_fixes2
Add py34-first_startup to Travis and default tox tests
Compare: https://github.com/galaxyproject/galaxy/compare/b5214867c9ff...f8bc0656f9cf
**NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
Branch: refs/heads/master
Home: https://github.com/galaxyproject/infrastructure-playbook
Commit: 14f78d9d7e140b7028c11df75cb7a03869247685
https://github.com/galaxyproject/infrastructure-playbook/commit/14f78d9d7e1…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2018-06-11 (Mon, 11 Jun 2018)
Changed paths:
M env/galaxy/group_vars/cvmfsservers/vars.yml
M env/galaxy/group_vars/cvmfsstratum1servers/vars.yml
M env/galaxy/group_vars/dockerswarmmanagers/vars.yml
M env/galaxy/group_vars/dockerswarmmanagers/vault.yml
M env/galaxy/group_vars/jetstreamhosts/vault.yml
M env/galaxy/inventory
M env/galaxy/playbook.yml
R env/jsiu/group_vars/all.yml
A env/jsiu/group_vars/all/vars.yml
A env/jsiu/group_vars/all/vault.yml
A env/jsiu/group_vars/controllers.yml
R env/jsiu/group_vars/controllers/vars.yml
R env/jsiu/group_vars/controllers/vault.yml
M env/jsiu/group_vars/cvmfsclients.yml
A env/jsiu/group_vars/cvmfsservers.yml
M env/jsiu/inventory
M env/jsiu/playbook.yml
M env/jsiu/templates/slurm/slurm.conf.j2
M roles/docker_swarm/tasks/main.yml
M roles/jetstream_nfs/tasks/server.yml
M roles/openstack/tasks/spawn.yml
M roles/slurmscale/files/ansible.cfg
M roles/slurmscale/files/config.yml
M roles/slurmscale/files/group_vars/all/cluster.yml
M roles/slurmscale/files/spawn.yml
M roles/slurmscale/files/start.yml
R roles/slurmscale/files/templates/slurm/slurm.conf.j2
M roles/slurmscale/tasks/main.yml
M roles/slurmscale/templates/group_vars/all/cloud.yml.j2
M roles/slurmscale/templates/slurm_resume.sh.j2
M roles/slurmscale/templates/slurm_suspend.sh.j2
Log Message:
-----------
Relaunch JS@IU, now with more elastic
Commit: bbd846f535c968b540c51263e2a7e2df7e5f855e
https://github.com/galaxyproject/infrastructure-playbook/commit/bbd846f535c…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2018-06-12 (Tue, 12 Jun 2018)
Changed paths:
M env/jsiu/templates/slurm/slurm.conf.j2
M roles/slurmscale/files/ansible.cfg
R roles/slurmscale/files/config.yml
M roles/slurmscale/files/group_vars/all/cluster.yml
M roles/slurmscale/files/group_vars/all/spawn.yml
R roles/slurmscale/files/group_vars/jetstream-large.yml
R roles/slurmscale/files/group_vars/jetstream-medium.yml
R roles/slurmscale/files/group_vars/jetstream-small.yml
R roles/slurmscale/files/inventory/flavors
A roles/slurmscale/files/inventory/openstack.yml
R roles/slurmscale/files/inventory/openstack_inventory.py
A roles/slurmscale/files/resume.yml
A roles/slurmscale/files/roles/galaxynodeconfig/tasks/main.yml
R roles/slurmscale/files/spawn.yml
R roles/slurmscale/files/start.yml
R roles/slurmscale/files/stop.yml
A roles/slurmscale/files/suspend.yml
M roles/slurmscale/tasks/main.yml
R roles/slurmscale/templates/slurm_resume.sh.j2
R roles/slurmscale/templates/slurm_suspend.sh.j2
A roles/slurmscale/templates/suspend_resume.sh.j2
Log Message:
-----------
Simplify slurm suspend/resume process and reduce some duplication.
Compare: https://github.com/galaxyproject/infrastructure-playbook/compare/f495dd5166…
**NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.