Branch: refs/heads/release_18.05
Home: https://github.com/galaxyproject/galaxy
Commit: f7ffde9db447be807f3c7924bbfe243c3f6faa51
https://github.com/galaxyproject/galaxy/commit/f7ffde9db447be807f3c7924bbfe…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-25 (Fri, 25 May 2018)
Changed paths:
M client/galaxy/style/scss/base.scss
M static/style/blue/base.css
Log Message:
-----------
Alias btn-xs to btn-sm for thinks (like welcome) which may have been customized and rely on the previous styles.
Commit: db444455b29b008b0f3bdf0844f38a4db1e457ef
https://github.com/galaxyproject/galaxy/commit/db444455b29b008b0f3bdf0844f3…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-25 (Fri, 25 May 2018)
Changed paths:
M client/galaxy/style/scss/base.scss
M static/style/blue/base.css
Log Message:
-----------
Alias btn-default to btn-secondary for backwards compatibility.
Commit: 074ec18490e2fb86c17a506374d78269c29ae03f
https://github.com/galaxyproject/galaxy/commit/074ec18490e2fb86c17a506374d7…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-25 (Fri, 25 May 2018)
Changed paths:
M client/galaxy/scripts/mvc/tours.js
M client/galaxy/style/scss/base.scss
M static/scripts/bundled/libs.bundled.js
M static/scripts/mvc/tours.js
M static/style/blue/base.css
Log Message:
-----------
Missed label->badge translations.
Commit: 69c74d52d4a4614aa544abd2c7a810fa817b7404
https://github.com/galaxyproject/galaxy/commit/69c74d52d4a4614aa544abd2c7a8…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-25 (Fri, 25 May 2018)
Changed paths:
M client/galaxy/scripts/mvc/tours.js
M client/galaxy/style/scss/base.scss
M static/scripts/bundled/libs.bundled.js
M static/scripts/mvc/tours.js
M static/style/blue/base.css
Log Message:
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Drop sm-badge-pad completely (standard styles handle this now)
Commit: 20cf8b5bf0f4632d0f3c275c3261f920bbf76211
https://github.com/galaxyproject/galaxy/commit/20cf8b5bf0f4632d0f3c275c3261…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-06-08 (Fri, 08 Jun 2018)
Changed paths:
M client/galaxy/scripts/mvc/tours.js
M client/galaxy/style/scss/base.scss
M static/scripts/bundled/libs.bundled.js
M static/scripts/mvc/tours.js
M static/style/blue/base.css
Log Message:
-----------
Merge pull request #6226 from dannon/minor_style_fixes
[18.05] Two minor aliases for (exterior) backwards compatibility, minor badge tweaks
Compare: https://github.com/galaxyproject/galaxy/compare/75c9610fdaf1...20cf8b5bf0f4
**NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
Branch: refs/heads/release_18.05
Home: https://github.com/galaxyproject/galaxy
Commit: 46290939092a8068836712176ddbfc7641f69ada
https://github.com/galaxyproject/galaxy/commit/46290939092a8068836712176ddb…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-29 (Tue, 29 May 2018)
Changed paths:
M client/galaxy/style/scss/history.scss
M static/style/blue/base.css
Log Message:
-----------
Fix history list bottom border
Commit: 7e220205f38abbe6d44f93f5ccfb14506838118a
https://github.com/galaxyproject/galaxy/commit/7e220205f38abbe6d44f93f5ccfb…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-29 (Tue, 29 May 2018)
Changed paths:
M client/galaxy/style/scss/history.scss
Log Message:
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A more accurate version of what was set before, with the same outcome (though, it could change if we toggle the grey)
Commit: cf3ed04d742938de52c24386dcf2f0c10409df71
https://github.com/galaxyproject/galaxy/commit/cf3ed04d742938de52c24386dcf2…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-29 (Tue, 29 May 2018)
Changed paths:
M client/galaxy/style/scss/list-item.scss
M static/style/blue/base.css
Log Message:
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Fix dataset messagesmall display, was a TODO left from migration
Commit: 6cf4c8e5f4780421dc45472bf495694dd49aaa47
https://github.com/galaxyproject/galaxy/commit/6cf4c8e5f4780421dc45472bf495…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-29 (Tue, 29 May 2018)
Changed paths:
M client/galaxy/style/scss/history.scss
M static/style/blue/base.css
Log Message:
-----------
Fix one more busted fade
Commit: 77dff21bcc6c1b2f93d400307a7f3332772f9943
https://github.com/galaxyproject/galaxy/commit/77dff21bcc6c1b2f93d400307a7f…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-29 (Tue, 29 May 2018)
Changed paths:
M client/galaxy/style/scss/base.scss
M static/style/blue/base.css
Log Message:
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Fix (ancient, should replace this, but might as well make it work until we do) tool-shed-only grid search button
Commit: 361b48a4d22e0f61ac6dcdf0d306d17d89b9d166
https://github.com/galaxyproject/galaxy/commit/361b48a4d22e0f61ac6dcdf0d306…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-29 (Tue, 29 May 2018)
Changed paths:
M client/galaxy/style/scss/base.scss
M static/style/blue/base.css
M templates/webapps/tool_shed/common/grid_common.mako
Log Message:
-----------
Drop submit-image custom styling, use standard fa; left it as inline style to keep it clean and remove all at once when this grid goes.
Commit: 9fe40db5b3cf82f09ae3a783a8b708e78239f27f
https://github.com/galaxyproject/galaxy/commit/9fe40db5b3cf82f09ae3a783a8b7…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-29 (Tue, 29 May 2018)
Changed paths:
M client/galaxy/style/scss/list-item.scss
M static/style/blue/base.css
Log Message:
-----------
Fix list panel control message margins.
Commit: 0e39cf1924cfacb879802934da0112470cba9a0e
https://github.com/galaxyproject/galaxy/commit/0e39cf1924cfacb879802934da01…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-29 (Tue, 29 May 2018)
Changed paths:
M client/galaxy/style/scss/upload.scss
Log Message:
-----------
This is correct now
Commit: 18ae4457a131948fe87b7038215e81dec647e3db
https://github.com/galaxyproject/galaxy/commit/18ae4457a131948fe87b7038215e…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-29 (Tue, 29 May 2018)
Changed paths:
M client/galaxy/scripts/components/RuleCollectionBuilder.vue
M client/galaxy/scripts/mvc/history/job-states-model.js
M client/galaxy/style/scss/history.scss
M client/galaxy/style/scss/list-item.scss
Log Message:
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Formatting for styles and a couple misc files
Commit: f1adf0a7920720ea7f20cdc3a21ea014f9ddd699
https://github.com/galaxyproject/galaxy/commit/f1adf0a7920720ea7f20cdc3a21e…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-06-08 (Fri, 08 Jun 2018)
Changed paths:
M client/galaxy/scripts/components/RuleCollectionBuilder.vue
M client/galaxy/scripts/mvc/history/job-states-model.js
M client/galaxy/style/scss/base.scss
M client/galaxy/style/scss/history.scss
M client/galaxy/style/scss/list-item.scss
M client/galaxy/style/scss/upload.scss
M static/style/blue/base.css
M templates/webapps/tool_shed/common/grid_common.mako
Log Message:
-----------
Merge pull request #6238 from dannon/1805stylefixes_rebased
[18.05] Various style fixes for history, toolshed, messages (backport)
Compare: https://github.com/galaxyproject/galaxy/compare/12f51a47897f...f1adf0a79207
**NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: d52b1f71bc106c3b402231d68c26a8bdb3575888
https://github.com/galaxyproject/galaxy/commit/d52b1f71bc106c3b402231d68c26…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-02 (Wed, 02 May 2018)
Changed paths:
M client/galaxy/scripts/mvc/workflow/workflow-canvas.js
M client/galaxy/scripts/mvc/workflow/workflow-manager.js
M client/galaxy/scripts/mvc/workflow/workflow-view.js
Log Message:
-----------
Incremental refactoring to es6 classes and other fixes while tracking down workflow issue.
Commit: bd248933f16ebab3af15e7e264ada3a89ff94337
https://github.com/galaxyproject/galaxy/commit/bd248933f16ebab3af15e7e264ad…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-03 (Thu, 03 May 2018)
Changed paths:
M client/galaxy/scripts/mvc/workflow/workflow-manager.js
M client/galaxy/scripts/mvc/workflow/workflow-node.js
M client/galaxy/scripts/mvc/workflow/workflow-view.js
Log Message:
-----------
More incremental refactoring while tracking down workflow bugs.
Commit: 2de4219aae59cd93f7b9891d05d0d94859a9febc
https://github.com/galaxyproject/galaxy/commit/2de4219aae59cd93f7b9891d05d0…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-07 (Mon, 07 May 2018)
Changed paths:
M lib/galaxy/managers/workflows.py
Log Message:
-----------
Fix a bunch of typos in workflow manager.
Commit: 1f405d6916e2fdff808f9c65b5b3c5becedd21c9
https://github.com/galaxyproject/galaxy/commit/1f405d6916e2fdff808f9c65b5b3…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-07 (Mon, 07 May 2018)
Changed paths:
M lib/galaxy/managers/workflows.py
Log Message:
-----------
Drop unnecessary workflow enumerate in workflow manager.
Commit: a4bf7aca6f5e556777d24d7d61dab31a0cc797e0
https://github.com/galaxyproject/galaxy/commit/a4bf7aca6f5e556777d24d7d61da…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-07 (Mon, 07 May 2018)
Changed paths:
M lib/galaxy/web/framework/webapp.py
Log Message:
-----------
Minor refactoring in webapp to clarify history association logic (and maybe reuse it)
Commit: 1fa77c38f611351bdc5bece9e9d06a16da08f42b
https://github.com/galaxyproject/galaxy/commit/1fa77c38f611351bdc5bece9e9d0…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-07 (Mon, 07 May 2018)
Changed paths:
M lib/galaxy/managers/workflows.py
Log Message:
-----------
Respect workflow_building_modes.ENABLED in workflow manager's to_dict.
Commit: d09dfca4292f9cf34ef1bad76c39eb21fe984518
https://github.com/galaxyproject/galaxy/commit/d09dfca4292f9cf34ef1bad76c39…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-08 (Tue, 08 May 2018)
Changed paths:
M lib/galaxy/web/framework/webapp.py
Log Message:
-----------
More typos, minor tweak to _associate_user_history
Commit: b43ef5538121360c63b895d2a86dec91070598c0
https://github.com/galaxyproject/galaxy/commit/b43ef5538121360c63b895d2a86d…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-08 (Tue, 08 May 2018)
Changed paths:
M client/galaxy/scripts/mvc/workflow/workflow-view.js
Log Message:
-----------
Drop unused edit_workflow_outputs functionality
Commit: d2805bb6ca62dd690d1477adc676f1f62dd5577b
https://github.com/galaxyproject/galaxy/commit/d2805bb6ca62dd690d1477adc676…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-11 (Fri, 11 May 2018)
Changed paths:
M .ci/jenkins/selenium/run_tests.sh
M client/galaxy/scripts/apps/analysis.js
M client/galaxy/scripts/components/RuleCollectionBuilder.vue
A client/galaxy/scripts/components/Sharing.vue
M client/galaxy/scripts/layout/menu.js
M client/galaxy/scripts/mvc/collection/collection-model.js
M client/galaxy/scripts/mvc/grid/grid-shared.js
M client/galaxy/scripts/mvc/history/hdca-li-edit.js
M client/galaxy/scripts/mvc/history/options-menu.js
M client/galaxy/scripts/mvc/rules/rule-definitions.js
M client/galaxy/scripts/mvc/tool/tool-form.js
M client/galaxy/scripts/mvc/user/user-quotameter.js
M client/galaxy/scripts/mvc/visualization/chart/utilities/jobs.js
M client/galaxy/scripts/mvc/visualization/chart/utilities/series.js
M client/galaxy/scripts/mvc/workflow/workflow-node.js
M client/galaxy/scripts/utils/async-save-text.js
M client/galaxy/style/scss/base.scss
M client/galaxy/style/scss/galaxy_bootstrap/variables.scss
M client/galaxy/style/scss/history.scss
M client/package.json
M client/yarn.lock
M config/datatypes_conf.xml.sample
M config/job_metrics_conf.xml.sample
M config/plugins/visualizations/heatmap/heatmap_default/src/script.js
M config/plugins/visualizations/heatmap/heatmap_default/static/script.js
M config/plugins/visualizations/jqplot/jqplot_bar/src/script.js
M config/plugins/visualizations/jqplot/jqplot_bar/static/script.css
M config/plugins/visualizations/jqplot/jqplot_bar/static/script.js
M config/plugins/visualizations/nvd3/nvd3_histogram/config/nvd3_histogram.xml
M config/plugins/visualizations/nvd3/nvd3_histogram_discrete/config/nvd3_histogram_discrete.xml
M lib/galaxy/datatypes/binary.py
A lib/galaxy/datatypes/converters/bz2_to_uncompressed.xml
M lib/galaxy/datatypes/converters/gz_to_uncompressed.xml
M lib/galaxy/datatypes/registry.py
M lib/galaxy/datatypes/sniff.py
M lib/galaxy/dependencies/pipfiles/default/Pipfile
M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt
M lib/galaxy/jobs/__init__.py
M lib/galaxy/jobs/mapper.py
M lib/galaxy/jobs/metrics/instrumenters/cgroup.py
M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh
M lib/galaxy/managers/base.py
M lib/galaxy/managers/collections.py
M lib/galaxy/managers/pages.py
M lib/galaxy/managers/sharable.py
M lib/galaxy/managers/workflows.py
M lib/galaxy/model/__init__.py
M lib/galaxy/model/mapping.py
M lib/galaxy/model/migrate/versions/0141_add_oidc_tables.py
A lib/galaxy/model/migrate/versions/0142_change_numeric_metric_precision.py
M lib/galaxy/tools/__init__.py
M lib/galaxy/tools/errors.py
M lib/galaxy/tools/parameters/dataset_matcher.py
M lib/galaxy/tools/parameters/dynamic_options.py
M lib/galaxy/tools/verify/interactor.py
M lib/galaxy/util/permutations.py
M lib/galaxy/util/rules_dsl.py
M lib/galaxy/web/base/controller.py
M lib/galaxy/web/framework/middleware/sentry.py
M lib/galaxy/webapps/galaxy/api/histories.py
M lib/galaxy/webapps/galaxy/api/library_datasets.py
M lib/galaxy/webapps/galaxy/api/pages.py
M lib/galaxy/webapps/galaxy/api/users.py
M lib/galaxy/webapps/galaxy/api/visualizations.py
M lib/galaxy/webapps/galaxy/api/workflows.py
M lib/galaxy/webapps/galaxy/buildapp.py
M lib/galaxy/webapps/galaxy/controllers/history.py
M lib/galaxy/webapps/galaxy/controllers/page.py
M lib/galaxy/webapps/galaxy/controllers/visualization.py
M lib/galaxy/webapps/galaxy/controllers/workflow.py
M run_tests.sh
M scripts/grt/export.py
M static/style/blue/base.css
M templates/display_common.mako
M templates/ind_share_base.mako
R templates/sharing_base.mako
M templates/webapps/galaxy/workflow/editor.mako
M test/api/test_libraries.py
M test/api/test_tools.py
M test/base/data/rules_dsl_spec.yml
M test/docker/base/Dockerfile
M test/docker/base/ansible_vars.yml
M test/docker/base/run_test_wrapper.sh
A test/unit/datatypes/test_datatypes_registry.py
Log Message:
-----------
Merge remote-tracking branch 'upstream/dev' into workflow_fixes
Commit: 9a798395d13a061bf5355a88c154975da6a516cf
https://github.com/galaxyproject/galaxy/commit/9a798395d13a061bf5355a88c154…
Author: Marius van den Beek <m.vandenbeek(a)gmail.com>
Date: 2018-06-08 (Fri, 08 Jun 2018)
Changed paths:
M client/galaxy/scripts/mvc/workflow/workflow-canvas.js
M client/galaxy/scripts/mvc/workflow/workflow-manager.js
M client/galaxy/scripts/mvc/workflow/workflow-node.js
M client/galaxy/scripts/mvc/workflow/workflow-view.js
M lib/galaxy/managers/workflows.py
M lib/galaxy/web/framework/webapp.py
Log Message:
-----------
Merge pull request #6076 from dannon/workflow_fixes
Workflow and remote-user related refactoring and a bug fix
Compare: https://github.com/galaxyproject/galaxy/compare/db5dc5580c6e...9a798395d13a
**NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.