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galaxy-commits@lists.galaxyproject.org
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[galaxyproject/galaxy] 8ad57f: Fix for rendering multiple dependent dynamic selec...
by GitHub
11 Jul '18
11 Jul '18
Branch: refs/heads/dev Home:
https://github.com/galaxyproject/galaxy
Commit: 8ad57fa1f18453c1cd94249b881b93a557639dfd
https://github.com/galaxyproject/galaxy/commit/8ad57fa1f18453c1cd94249b881b…
Author: greg <ghv2(a)psu.edu> Date: 2018-06-21 (Thu, 21 Jun 2018) Changed paths: M lib/galaxy/tools/parameters/basic.py Log Message: ----------- Fix for rendering multiple dependent dynamic select lists where choosing an option in the first refreshes the options in the second Commit: 6fc937a3d8b46f3620b73f3e057d9b6ba5422540
https://github.com/galaxyproject/galaxy/commit/6fc937a3d8b46f3620b73f3e057d…
Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-07-11 (Wed, 11 Jul 2018) Changed paths: M lib/galaxy/tools/parameters/basic.py Log Message: ----------- Merge pull request #6374 from gregvonkuster/multi_dynamic_select Fix for rendering multiple dependent dynamic select lists Compare:
https://github.com/galaxyproject/galaxy/compare/f33770096c03...6fc937a3d8b4
**NOTE:** This service been marked for deprecation:
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[galaxyproject/galaxy] 603b23: Force standard HTTPTransport for sentry -- this pl...
by GitHub
11 Jul '18
11 Jul '18
Branch: refs/heads/release_18.05 Home:
https://github.com/galaxyproject/galaxy
Commit: 603b2365b6a261e5603c618c637cf8458e667007
https://github.com/galaxyproject/galaxy/commit/603b2365b6a261e5603c618c637c…
Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-06-21 (Thu, 21 Jun 2018) Changed paths: M lib/galaxy/app.py M lib/galaxy/tools/error_reports/plugins/sentry.py Log Message: ----------- Force standard HTTPTransport for sentry -- this plays nicer with a wider array of uwsgi configurations Commit: 20565a2b8517fbc4c54524fa0ae127c2f6aaefb0
https://github.com/galaxyproject/galaxy/commit/20565a2b8517fbc4c54524fa0ae1…
Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-07-11 (Wed, 11 Jul 2018) Changed paths: M lib/galaxy/app.py M lib/galaxy/tools/error_reports/plugins/sentry.py Log Message: ----------- Merge pull request #6375 from dannon/sentry_transport_fix [18.05] Specify standard HTTPTransport for Sentry Compare:
https://github.com/galaxyproject/galaxy/compare/93fc3a63507d...20565a2b8517
**NOTE:** This service been marked for deprecation:
https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from
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on January 31st, 2019.
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[galaxyproject/galaxy] f94a07: Make sure that the workflow step has a proper stat...
by GitHub
11 Jul '18
11 Jul '18
Branch: refs/heads/release_18.05 Home:
https://github.com/galaxyproject/galaxy
Commit: f94a073e86be608916ec7ae79285da06ee82483b
https://github.com/galaxyproject/galaxy/commit/f94a073e86be608916ec7ae79285…
Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-06-21 (Thu, 21 Jun 2018) Changed paths: M lib/galaxy/web/base/controller.py Log Message: ----------- Make sure that the workflow step has a proper state available Commit: 93fc3a63507d6cd7c85a99ad62e71b14d4d6265e
https://github.com/galaxyproject/galaxy/commit/93fc3a63507d6cd7c85a99ad62e7…
Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-07-11 (Wed, 11 Jul 2018) Changed paths: M lib/galaxy/web/base/controller.py Log Message: ----------- Merge pull request #6369 from guerler/pages [18.05] Make sure that the workflow step has a proper state available Compare:
https://github.com/galaxyproject/galaxy/compare/3fe88a9bfe1b...93fc3a63507d
**NOTE:** This service been marked for deprecation:
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Functionality will be removed from
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on January 31st, 2019.
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[galaxyproject/galaxy] bc95f2: Fix the --log-file option in the job handlers
by GitHub
11 Jul '18
11 Jul '18
Branch: refs/heads/release_18.01 Home:
https://github.com/galaxyproject/galaxy
Commit: bc95f2563601635cfa1daa686b3d5c4e3ebb51ea
https://github.com/galaxyproject/galaxy/commit/bc95f2563601635cfa1daa686b3d…
Author: Devon Ryan <dpryan79(a)gmail.com> Date: 2018-07-09 (Mon, 09 Jul 2018) Changed paths: M lib/galaxy/config.py Log Message: ----------- Fix the --log-file option in the job handlers (cherry picked from commit 97c344a17a0188a687629103feefcdf03af8e768) Commit: 23666c94a22b816bc5238e4a22c759a11265f7aa
https://github.com/galaxyproject/galaxy/commit/23666c94a22b816bc5238e4a22c7…
Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-07-11 (Wed, 11 Jul 2018) Changed paths: M lib/galaxy/config.py Log Message: ----------- Merge pull request #6477 from natefoo/backport-pr-6351 [18.01] Fix the --log-file option in the job handlers Compare:
https://github.com/galaxyproject/galaxy/compare/36706e9eb387...23666c94a22b
**NOTE:** This service been marked for deprecation:
https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from
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on January 31st, 2019.
1
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[galaxyproject/galaxy] 8077d5: Update common_startup_functions.sh
by GitHub
11 Jul '18
11 Jul '18
Branch: refs/heads/dev Home:
https://github.com/galaxyproject/galaxy
Commit: 8077d59fd9772ef6d1d9175e8edef4c8f95ace5a
https://github.com/galaxyproject/galaxy/commit/8077d59fd9772ef6d1d9175e8ede…
Author: Nadia Goué <nadia.goue(a)gmail.com> Date: 2018-07-10 (Tue, 10 Jul 2018) Changed paths: M scripts/common_startup_functions.sh Log Message: ----------- Update common_startup_functions.sh Not to override tool_shed config file. Commit: f33770096c038d420696c822bd3ab8c397156f14
https://github.com/galaxyproject/galaxy/commit/f33770096c038d420696c822bd3a…
Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-07-11 (Wed, 11 Jul 2018) Changed paths: M scripts/common_startup_functions.sh Log Message: ----------- Merge pull request #6481 from nagoue/patch-1 Update common_startup_functions.sh Compare:
https://github.com/galaxyproject/galaxy/compare/f25af28f6667...f33770096c03
**NOTE:** This service been marked for deprecation:
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[galaxyproject/galaxy] fb449b: fix the logging init
by GitHub
11 Jul '18
11 Jul '18
Branch: refs/heads/dev Home:
https://github.com/galaxyproject/galaxy
Commit: fb449b49906197fbb611833acf06ee13e5b34e48
https://github.com/galaxyproject/galaxy/commit/fb449b49906197fbb611833acf06…
Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-07-09 (Mon, 09 Jul 2018) Changed paths: M scripts/grt/upload.py Log Message: ----------- fix the logging init - properly initialiaze the logger - change level for some of the logs - add some debug and critical logs Commit: 390aedf8c8c28db739a78dc7c41e9275a735369b
https://github.com/galaxyproject/galaxy/commit/390aedf8c8c28db739a78dc7c41e…
Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-07-09 (Mon, 09 Jul 2018) Changed paths: M scripts/grt/grt.yml.sample M scripts/grt/upload.py Log Message: ----------- add all sample tool_conf data source tools to GRT sanitization Commit: ab760f5d27bb248a9c78d79a002b5ab2c68fa5d3
https://github.com/galaxyproject/galaxy/commit/ab760f5d27bb248a9c78d79a002b…
Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-07-10 (Tue, 10 Jul 2018) Changed paths: M scripts/grt/export.py M scripts/grt/grt.yml.sample Log Message: ----------- revert the datasource tool sanitation, set default # for export Commit: f25af28f6667fa3984fd64bd5c17d906c5e1510a
https://github.com/galaxyproject/galaxy/commit/f25af28f6667fa3984fd64bd5c17…
Author: Helena Rasche <erasche(a)users.noreply.github.com> Date: 2018-07-11 (Wed, 11 Jul 2018) Changed paths: M scripts/grt/export.py M scripts/grt/grt.yml.sample M scripts/grt/upload.py Log Message: ----------- Merge pull request #6478 from martenson/telescope-logging GRT: fix the upload logging init Compare:
https://github.com/galaxyproject/galaxy/compare/038da2e3e65b...f25af28f6667
**NOTE:** This service been marked for deprecation:
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Functionality will be removed from
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on January 31st, 2019.
1
0
0
0
[galaxyproject/galaxy] 6ca7db: Fix for show params server error for https://githu...
by GitHub
11 Jul '18
11 Jul '18
Branch: refs/heads/dev Home:
https://github.com/galaxyproject/galaxy
Commit: 6ca7db806b953a183fa192bcc0739540599348fa
https://github.com/galaxyproject/galaxy/commit/6ca7db806b953a183fa192bcc073…
Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com> Date: 2018-07-10 (Tue, 10 Jul 2018) Changed paths: M templates/show_params.mako Log Message: ----------- Fix for show params server error for
https://github.com/galaxyproject/galaxy/pull/6480
Commit: 038da2e3e65b8bb21fcf77a186f02db1aae563f2
https://github.com/galaxyproject/galaxy/commit/038da2e3e65b8bb21fcf77a186f0…
Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-07-10 (Tue, 10 Jul 2018) Changed paths: M templates/show_params.mako Log Message: ----------- Merge pull request #6486 from blankenberg/show-param Fix for show params server error Compare:
https://github.com/galaxyproject/galaxy/compare/0860fdf13497...038da2e3e65b
**NOTE:** This service been marked for deprecation:
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Functionality will be removed from
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1
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0
0
[galaxyproject/usegalaxy-playbook] aaf8aa: add intermine to Test configs
by GitHub
10 Jul '18
10 Jul '18
Branch: refs/heads/master Home:
https://github.com/galaxyproject/usegalaxy-playbook
Commit: aaf8aae9226a9dac206dc28524b8a3ce1ce89c6f
https://github.com/galaxyproject/usegalaxy-playbook/commit/aaf8aae9226a9dac…
Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-07-10 (Tue, 10 Jul 2018) Changed paths: M env/test/files/galaxy/config/tool_conf.xml M env/test/files/galaxy/config/tool_data_table_conf.xml M env/test/files/galaxy/var/integrated_tool_panel.xml Log Message: ----------- add intermine to Test configs **NOTE:** This service been marked for deprecation:
https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from
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1
0
0
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[galaxyproject/usegalaxy-playbook] 4a97ec: install imtermine exchange converter, update Test
by GitHub
10 Jul '18
10 Jul '18
Branch: refs/heads/master Home:
https://github.com/galaxyproject/usegalaxy-playbook
Commit: 4a97eced1ece9f8351168aa1d132c50d4628ad0e
https://github.com/galaxyproject/usegalaxy-playbook/commit/4a97eced1ece9f83…
Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-07-10 (Tue, 10 Jul 2018) Changed paths: M env/test/files/galaxy/galaxy_version.yml M env/test/files/galaxy/var/integrated_tool_panel.xml M env/test/files/galaxy/var/shed_tool_conf.xml Log Message: ----------- install imtermine exchange converter, update Test **NOTE:** This service been marked for deprecation:
https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from
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on January 31st, 2019.
1
0
0
0
[galaxyproject/galaxy] 9f0018: Add more information to the dataset template
by GitHub
10 Jul '18
10 Jul '18
Branch: refs/heads/dev Home:
https://github.com/galaxyproject/galaxy
Commit: 9f001807df651ec2792902aa82dd48ea0f937205
https://github.com/galaxyproject/galaxy/commit/9f001807df651ec2792902aa82dd…
Author: Helena Rasche <hxr(a)hx42.org> Date: 2018-07-10 (Tue, 10 Jul 2018) Changed paths: M templates/show_params.mako Log Message: ----------- Add more information to the dataset template Commit: 04db42343ce9840a078f0f0178a667e20c982b17
https://github.com/galaxyproject/galaxy/commit/04db42343ce9840a078f0f0178a6…
Author: Helena Rasche <hxr(a)hx42.org> Date: 2018-07-10 (Tue, 10 Jul 2018) Changed paths: M templates/show_params.mako Log Message: ----------- Address review comments Commit: 4bf2d60d6cdc1ef20a275aaf37d602c33005a865
https://github.com/galaxyproject/galaxy/commit/4bf2d60d6cdc1ef20a275aaf37d6…
Author: Nicola Soranzo <nicola.soranzo(a)gmail.com> Date: 2018-07-10 (Tue, 10 Jul 2018) Changed paths: M templates/show_params.mako Log Message: ----------- Use horizontal <th> Commit: 0860fdf134978f634707bf3f6aa18e1517f89bbb
https://github.com/galaxyproject/galaxy/commit/0860fdf134978f634707bf3f6aa1…
Author: Nicola Soranzo <nicola.soranzo(a)gmail.com> Date: 2018-07-10 (Tue, 10 Jul 2018) Changed paths: M templates/show_params.mako Log Message: ----------- Merge pull request #6480 from erasche/more-job-info Add more information to the dataset template Compare:
https://github.com/galaxyproject/galaxy/compare/ce09f53e24ff...0860fdf13497
**NOTE:** This service been marked for deprecation:
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