January 2019 - galaxy-commits - lists.galaxyproject.org

[galaxyproject/ansible-galaxy] 2fc79c: Add features for managing users, paths, and privil...
by GitHub 25 Jan '19

25 Jan '19

Branch: refs/heads/useradd Home: https://github.com/galaxyproject/ansible-galaxy Commit: 2fc79caefa5ed686a98bb30e5ae260e95c04bb42 https://github.com/galaxyproject/ansible-galaxy/commit/2fc79caefa5ed686a98b… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2019-01-25 (Fri, 25 Jan 2019) Changed paths: M defaults/main.yml M tasks/clone.yml M tasks/database.yml M tasks/dependencies.yml M tasks/download.yml M tasks/errordocs.yml M tasks/main.yml M tasks/mutable_setup.yml A tasks/paths.yml M tasks/static_setup.yml A tasks/user.yml Log Message: ----------- Add features for managing users, paths, and privilege separation Commit: e896bc94cbeb34c28ebc08022842ea0dc1664940 https://github.com/galaxyproject/ansible-galaxy/commit/e896bc94cbeb34c28ebc… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2019-01-25 (Fri, 25 Jan 2019) Changed paths: M README.md Log Message: ----------- Restructure documentation, remove some irrelevant stuff, and document new features. Compare: https://github.com/galaxyproject/ansible-galaxy/compare/2fc79caefa5e^...e89… **NOTE:** GitHub Services has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ We will provide an alternative path for the email notifications by January 31st, 2019.

1 0

[galaxyproject/ansible-galaxy] 6d810d: Add a variable for easy control over the layout of...
by GitHub 25 Jan '19

25 Jan '19

Branch: refs/heads/master Home: https://github.com/galaxyproject/ansible-galaxy Commit: 6d810d31ba3326be83f3d41be6d6355a4e356515 https://github.com/galaxyproject/ansible-galaxy/commit/6d810d31ba3326be83f3… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2019-01-24 (Thu, 24 Jan 2019) Changed paths: M README.md M defaults/main.yml A tasks/layout.yml M tasks/main.yml A vars/layout-custom.yml A vars/layout-legacy-improved.yml A vars/layout-legacy.yml A vars/layout-opt.yml A vars/layout-root-dir.yml Log Message: ----------- Add a variable for easy control over the layout of the Galaxy deployment. Commit: 63ccaba7644ea6d59557b58ace9cd53aebea39cd https://github.com/galaxyproject/ansible-galaxy/commit/63ccaba7644ea6d59557… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2019-01-25 (Fri, 25 Jan 2019) Changed paths: M .travis.yml M meta/main.yml Log Message: ----------- Bump required Ansible version to 2.5 for `vars` lookup plugin. Commit: 8f9f35d3682b9cb856fccfce8f25408279f92e08 https://github.com/galaxyproject/ansible-galaxy/commit/8f9f35d3682b9cb856fc… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2019-01-25 (Fri, 25 Jan 2019) Changed paths: M .travis.yml M README.md M defaults/main.yml M meta/main.yml A tasks/layout.yml M tasks/main.yml A vars/layout-custom.yml A vars/layout-legacy-improved.yml A vars/layout-legacy.yml A vars/layout-opt.yml A vars/layout-root-dir.yml Log Message: ----------- Merge pull request #49 from galaxyproject/layouts Add a variable for easy control over the layout of the Galaxy deployment Compare: https://github.com/galaxyproject/ansible-galaxy/compare/766b5408b917...8f9f… **NOTE:** GitHub Services has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ We will provide an alternative path for the email notifications by January 31st, 2019.

1 0

[galaxyproject/usegalaxy-playbook] a35643: Removed gemini tools and dependencies.
by GitHub 25 Jan '19

25 Jan '19

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: a35643d3e5eecd2df2ae82d92500c40446062a80 https://github.com/galaxyproject/usegalaxy-playbook/commit/a35643d3e5eecd2d… Author: Dave B <dave(a)bx.psu.edu> Date: 2019-01-25 (Fri, 25 Jan 2019) Changed paths: M env/main/files/galaxy/var/integrated_tool_panel.xml M env/main/files/galaxy/var/shed_tool_conf.xml M env/main/files/galaxy/var/shed_tool_data_table_conf.xml Log Message: ----------- Removed gemini tools and dependencies. **NOTE:** GitHub Services has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ We will provide an alternative path for the email notifications by January 31st, 2019.

1 0

[galaxyproject/ansible-galaxy] 63ccab: Bump required Ansible version to 2.5 for `vars` lo...
by GitHub 25 Jan '19

25 Jan '19

Branch: refs/heads/layouts Home: https://github.com/galaxyproject/ansible-galaxy Commit: 63ccaba7644ea6d59557b58ace9cd53aebea39cd https://github.com/galaxyproject/ansible-galaxy/commit/63ccaba7644ea6d59557… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2019-01-25 (Fri, 25 Jan 2019) Changed paths: M .travis.yml M meta/main.yml Log Message: ----------- Bump required Ansible version to 2.5 for `vars` lookup plugin. **NOTE:** GitHub Services has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ We will provide an alternative path for the email notifications by January 31st, 2019.

1 0

[galaxyproject/usegalaxy-playbook] f8666f: Reinstall gemini data manager.
by GitHub 25 Jan '19

25 Jan '19

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: f8666f0d2f986eb84eb19a9b223df71e2bb30165 https://github.com/galaxyproject/usegalaxy-playbook/commit/f8666f0d2f986eb8… Author: Dave B <dave(a)bx.psu.edu> Date: 2019-01-25 (Fri, 25 Jan 2019) Changed paths: M env/test/files/galaxy/var/shed_tool_data_table_conf.xml Log Message: ----------- Reinstall gemini data manager. **NOTE:** GitHub Services has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ We will provide an alternative path for the email notifications by January 31st, 2019.

1 0

[galaxyproject/usegalaxy-playbook] b1110c: Removed data managers for twobit, diamond, and gem...
by GitHub 25 Jan '19

25 Jan '19

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: b1110cf4935be982e81fe73efe016568390ce49d https://github.com/galaxyproject/usegalaxy-playbook/commit/b1110cf4935be982… Author: Dave B <dave(a)bx.psu.edu> Date: 2019-01-25 (Fri, 25 Jan 2019) Changed paths: M env/main/files/galaxy/var/shed_data_manager_conf.xml Log Message: ----------- Removed data managers for twobit, diamond, and gemini. **NOTE:** GitHub Services has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ We will provide an alternative path for the email notifications by January 31st, 2019.

1 0

[galaxyproject/ansible-galaxy] 6d810d: Add a variable for easy control over the layout of...
by GitHub 24 Jan '19

24 Jan '19

Branch: refs/heads/layouts Home: https://github.com/galaxyproject/ansible-galaxy Commit: 6d810d31ba3326be83f3d41be6d6355a4e356515 https://github.com/galaxyproject/ansible-galaxy/commit/6d810d31ba3326be83f3… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2019-01-24 (Thu, 24 Jan 2019) Changed paths: M README.md M defaults/main.yml A tasks/layout.yml M tasks/main.yml A vars/layout-custom.yml A vars/layout-legacy-improved.yml A vars/layout-legacy.yml A vars/layout-opt.yml A vars/layout-root-dir.yml Log Message: ----------- Add a variable for easy control over the layout of the Galaxy deployment. **NOTE:** GitHub Services has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ We will provide an alternative path for the email notifications by January 31st, 2019.

1 0

[galaxyproject/ansible-galaxy] 766b54: Minor formatting fixes
by GitHub 24 Jan '19

24 Jan '19

Branch: refs/heads/master Home: https://github.com/galaxyproject/ansible-galaxy Commit: 766b5408b917e431a9883699b4cc51d9cca7356e https://github.com/galaxyproject/ansible-galaxy/commit/766b5408b917e431a988… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2019-01-24 (Thu, 24 Jan 2019) Changed paths: M README.md M defaults/main.yml M tasks/main.yml Log Message: ----------- Minor formatting fixes **NOTE:** GitHub Services has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ We will provide an alternative path for the email notifications by January 31st, 2019.

1 0

[galaxyproject/ansible-galaxy] db2091: Add a variable for easy control over the layout of...
by GitHub 24 Jan '19

24 Jan '19

Branch: refs/heads/layouts Home: https://github.com/galaxyproject/ansible-galaxy Commit: db2091d28eecb0ced2d629ab878055f1d23e3076 https://github.com/galaxyproject/ansible-galaxy/commit/db2091d28eecb0ced2d6… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2019-01-24 (Thu, 24 Jan 2019) Changed paths: M README.md M defaults/main.yml A tasks/layout.yml M tasks/main.yml A vars/layout-custom.yml A vars/layout-legacy-improved.yml A vars/layout-legacy.yml A vars/layout-opt.yml A vars/layout-root-dir.yml Log Message: ----------- Add a variable for easy control over the layout of the Galaxy deployment. **NOTE:** GitHub Services has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ We will provide an alternative path for the email notifications by January 31st, 2019.

1 0

[galaxyproject/galaxy] 12128a: Fix _.escape typo in toolshed group detail view
by GitHub 24 Jan '19

24 Jan '19

Branch: refs/heads/release_19.01 Home: https://github.com/galaxyproject/galaxy Commit: 12128ad49d763ad725e5861ff0e1cd5aaeb5461e https://github.com/galaxyproject/galaxy/commit/12128ad49d763ad725e5861ff0e1… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2019-01-24 (Thu, 24 Jan 2019) Changed paths: M client/galaxy/scripts/toolshed/groups/group-detail-view.js Log Message: ----------- Fix _.escape typo in toolshed group detail view Commit: 8c93a914d86071968075a551ed307633ea68fbff https://github.com/galaxyproject/galaxy/commit/8c93a914d86071968075a551ed30… Author: Nicola Soranzo <nicola.soranzo(a)gmail.com> Date: 2019-01-24 (Thu, 24 Jan 2019) Changed paths: M client/galaxy/scripts/toolshed/groups/group-detail-view.js Log Message: ----------- Merge pull request #7267 from dannon/toolshed-roup-detail-view-typo [19.01] Fix _.escape typo in toolshed group detail view Compare: https://github.com/galaxyproject/galaxy/compare/dc6ec1ed3dec...8c93a914d860 **NOTE:** GitHub Services has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ We will provide an alternative path for the email notifications by January 31st, 2019.

1 0