Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 348b190ecf70db5cb1297b423b71f92519aecd80
https://github.com/galaxyproject/galaxy/commit/348b190ecf70db5cb1297b423b71…
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2019-02-11 (Mon, 11 Feb 2019)
Changed paths:
M doc/source/project/issues.rst
Log Message:
-----------
Update ``area`` issue/PR labels
- Add some labels that were added on GitHub, but not here:
- authentication
- client-build
- compliance
- Rename `system` to `scripts`, since this was the original (I think)
and `system` is too generic
- Remove unused `roadmap`, we use GitHub `Projects` now
Commit: 5b67fa7b7020b573f63616201421beb9b656b6c9
https://github.com/galaxyproject/galaxy/commit/5b67fa7b7020b573f63616201421…
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2019-02-11 (Mon, 11 Feb 2019)
Changed paths:
M doc/source/project/issues.rst
Log Message:
-----------
Rename `authentication` to `auth`
to include also authorization. Suggested by @martenson .
Commit: 4b92f95e87b1af27bbb338e849f171176b320a89
https://github.com/galaxyproject/galaxy/commit/4b92f95e87b1af27bbb338e849f1…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2019-02-11 (Mon, 11 Feb 2019)
Changed paths:
M doc/source/project/issues.rst
Log Message:
-----------
Merge pull request #7344 from nsoranzo/update_area_labels
Update ``area`` issue/PR labels
Compare: https://github.com/galaxyproject/galaxy/compare/f9f894d2e156...4b92f95e87b1
Branch: refs/heads/release_19.01
Home: https://github.com/galaxyproject/galaxy
Commit: 9f501bb2b0bfa5193cd908d5f43bdca9a4bc5a2d
https://github.com/galaxyproject/galaxy/commit/9f501bb2b0bfa5193cd908d5f43b…
Author: Matt Chambers <matt.chambers42(a)gmail.com>
Date: 2019-02-04 (Mon, 04 Feb 2019)
Changed paths:
M config/datatypes_conf.xml.sample
M lib/galaxy/datatypes/binary.py
A lib/galaxy/datatypes/test/brukerbaf.d.tar
Log Message:
-----------
Add datatypes and sniffers for several directory-based mass spectrometry formats: Bruker BAF, Agilent/Bruker YEP, Bruker TDF, Agilent MassHunter, and Waters MassLynx
Commit: 365ac400ae629b415b8ec11a364ec0e4465d1c7f
https://github.com/galaxyproject/galaxy/commit/365ac400ae629b415b8ec11a364e…
Author: Matt Chambers <matt.chambers42(a)gmail.com>
Date: 2019-02-05 (Tue, 05 Feb 2019)
Changed paths:
M lib/galaxy/datatypes/binary.py
Log Message:
-----------
Fix lint errors
Commit: 413af14bb55d890ca053d08877cee98ab440008f
https://github.com/galaxyproject/galaxy/commit/413af14bb55d890ca053d08877ce…
Author: Matt Chambers <matt.chambers42(a)gmail.com>
Date: 2019-02-05 (Tue, 05 Feb 2019)
Changed paths:
M lib/galaxy/datatypes/binary.py
Log Message:
-----------
Fix lint errors
Commit: d30852b286b9baba5cf6faffa389db8ec2837114
https://github.com/galaxyproject/galaxy/commit/d30852b286b9baba5cf6faffa389…
Author: Matt Chambers <matt.chambers42(a)gmail.com>
Date: 2019-02-05 (Tue, 05 Feb 2019)
Changed paths:
M config/datatypes_conf.xml.sample
M lib/galaxy/datatypes/binary.py
A lib/galaxy/datatypes/test/some.wiff.tar
Log Message:
-----------
Add wiff.tar extension and sniffer
Commit: dc303f004fc5254f6de14bc29084532d3db98912
https://github.com/galaxyproject/galaxy/commit/dc303f004fc5254f6de14bc29084…
Author: Matt Chambers <matt.chambers42(a)gmail.com>
Date: 2019-02-06 (Wed, 06 Feb 2019)
Changed paths:
M config/datatypes_conf.xml.sample
M lib/galaxy/datatypes/binary.py
Log Message:
-----------
Remove try/except in sniffers
Add .d/.raw to file_ext
Commit: f7322d85a317614de1a745da57d5e394b5eb8041
https://github.com/galaxyproject/galaxy/commit/f7322d85a317614de1a745da57d5…
Author: Björn Grüning <bjoern(a)gruenings.eu>
Date: 2019-02-09 (Sat, 09 Feb 2019)
Changed paths:
M config/datatypes_conf.xml.sample
M lib/galaxy/datatypes/binary.py
A lib/galaxy/datatypes/test/brukerbaf.d.tar
A lib/galaxy/datatypes/test/some.wiff.tar
Log Message:
-----------
Merge pull request #7299 from chambm/feature/rawtar-datatypes
Add datatypes and sniffers for tar archives of directory-based MS formats and WIFF/SCAN pairs
Compare: https://github.com/galaxyproject/galaxy/compare/f0026962219e...f7322d85a317
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: f45dd3ac05eba2e32b4fa78b6218f94d4ba3a8b5
https://github.com/galaxyproject/galaxy/commit/f45dd3ac05eba2e32b4fa78b6218…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2019-02-08 (Fri, 08 Feb 2019)
Changed paths:
M lib/galaxy/jobs/__init__.py
M lib/galaxy/jobs/handler.py
R lib/galaxy/util/handlers.py
M lib/galaxy/web/stack/__init__.py
A lib/galaxy/web/stack/handlers.py
M lib/galaxy/workflow/scheduling_manager.py
Log Message:
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Refactor galaxy.util.handlers -> galaxy.web.stack.handlers.
Nothing in galaxy.util should import sqlalchemy stuff and this package does after #7129.
Commit: 572e91a52b67c59d4180273754ef9efd28eaa032
https://github.com/galaxyproject/galaxy/commit/572e91a52b67c59d4180273754ef…
Author: Björn Grüning <bjoern(a)gruenings.eu>
Date: 2019-02-09 (Sat, 09 Feb 2019)
Changed paths:
M lib/galaxy/jobs/__init__.py
M lib/galaxy/jobs/handler.py
R lib/galaxy/util/handlers.py
M lib/galaxy/web/stack/__init__.py
A lib/galaxy/web/stack/handlers.py
M lib/galaxy/workflow/scheduling_manager.py
Log Message:
-----------
Merge pull request #7339 from jmchilton/refactor_handlers
Refactor galaxy.util.handlers -> galaxy.web.stack.handlers.
Compare: https://github.com/galaxyproject/galaxy/compare/0284ab391583...572e91a52b67