February 2019 - galaxy-commits - lists.galaxyproject.org

[galaxyproject/ansible-galaxy] 3a90b7: Fix typo in sample code (create_user)
by Helena Rasche 08 Feb '19

08 Feb '19

Branch: refs/heads/master Home: https://github.com/galaxyproject/ansible-galaxy Commit: 3a90b7f9404d6ef1d3b7d719783bd446a517d0a5 https://github.com/galaxyproject/ansible-galaxy/commit/3a90b7f9404d6ef1d3b7… Author: Sergey Golitsynskiy <sgolitsynskiy(a)gmail.com> Date: 2019-02-07 (Thu, 07 Feb 2019) Changed paths: M README.md Log Message: ----------- Fix typo in sample code (create_user) Commit: 5230c2bb6b0c51701a7715e1a8e25066040cf8ff https://github.com/galaxyproject/ansible-galaxy/commit/5230c2bb6b0c51701a77… Author: Sergey Golitsynskiy <sgolitsynskiy(a)gmail.com> Date: 2019-02-08 (Fri, 08 Feb 2019) Changed paths: M README.md M defaults/main.yml M tasks/client.yml Log Message: ----------- Add optional selection of client build type Building a client currently comes with 3 options for the type of build: development, production and production with source maps. The new client build task (see #52) defaults to the latter (production with source maps). While there are good arguments for including source maps with production code (useful for debugging, etc.), there should be an easy and documented way for opting out when needed. One such use case is size constraints (in my estimation, including source maps adds 35M). By the same token, offering an option for a dev build seems reasonable, especially considering that all three options are described in the Galaxy client documentaion. Commit: bdd33aa01b73d9fdfd17406ad5686550ca8d4bd8 https://github.com/galaxyproject/ansible-galaxy/commit/bdd33aa01b73d9fdfd17… Author: Sergey Golitsynskiy <sgolitsynskiy(a)gmail.com> Date: 2019-02-08 (Fri, 08 Feb 2019) Changed paths: M README.md M defaults/main.yml Log Message: ----------- Change default value for client build to client-production-maps Commit: 3e9ff5520254bfe044995c29a1beada2acb2fe11 https://github.com/galaxyproject/ansible-galaxy/commit/3e9ff5520254bfe04499… Author: Helena Rasche <hxr(a)hx42.org> Date: 2019-02-08 (Fri, 08 Feb 2019) Changed paths: M README.md M defaults/main.yml M tasks/client.yml Log Message: ----------- Merge pull request #60 from ic4f/master (1) Fix typo in sample code; (2) Selection of client build type Compare: https://github.com/galaxyproject/ansible-galaxy/compare/971f7dd5b063...3e9f…

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[galaxyproject/usegalaxy-playbook] c089d2: Fix missing sam/bam rename
by Nate Coraor 08 Feb '19

08 Feb '19

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: c089d23463b3c3c592aeeaea1b897aafddb0c076 https://github.com/galaxyproject/usegalaxy-playbook/commit/c089d23463b3c3c5… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2019-02-08 (Fri, 08 Feb 2019) Changed paths: M env/main/files/galaxy/var/migrated_tools_conf.xml M env/main/files/galaxy/var/shed_tool_conf.xml Log Message: ----------- Fix missing sam/bam rename

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[galaxyproject/usegalaxy-playbook] cdec49: Fix more missed section IDs
by Nate Coraor 08 Feb '19

08 Feb '19

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: cdec49e30402d91c06c3bdb3991db2e7de22527e https://github.com/galaxyproject/usegalaxy-playbook/commit/cdec49e30402d91c… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2019-02-08 (Fri, 08 Feb 2019) Changed paths: M env/main/files/galaxy/var/migrated_tools_conf.xml M env/main/files/galaxy/var/shed_tool_conf.xml Log Message: ----------- Fix more missed section IDs

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[galaxyproject/usegalaxy-playbook] cf14ca: Rearrange Main tool panel
by Nate Coraor 08 Feb '19

08 Feb '19

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: cf14ca73a0b601da6948c20cc244ac3ab04b7e3f https://github.com/galaxyproject/usegalaxy-playbook/commit/cf14ca73a0b601da… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2019-02-08 (Fri, 08 Feb 2019) Changed paths: M env/main/files/galaxy/config/tool_conf.xml M env/main/files/galaxy/var/integrated_tool_panel.xml M env/main/files/galaxy/var/migrated_tools_conf.xml M env/main/files/galaxy/var/shed_tool_conf.xml Log Message: ----------- Rearrange Main tool panel

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[galaxyproject/usegalaxy-playbook] 5ef886: Add Jeremy to reserved
by Nate Coraor 08 Feb '19

08 Feb '19

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 5ef88653b16b7673e764d3aafa124c40cab457a0 https://github.com/galaxyproject/usegalaxy-playbook/commit/5ef88653b16b7673… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2019-02-08 (Fri, 08 Feb 2019) Changed paths: M env/common/files/galaxy/dynamic_rules/multi_dynamic_walltime.py M env/common/files/galaxy/dynamic_rules/reserved.py Log Message: ----------- Add Jeremy to reserved

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[galaxyproject/galaxy] a5fa1b: remove underline from history datasets
by Dannon 08 Feb '19

08 Feb '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: a5fa1b829a599bf33a5dd188d6417751f854d314 https://github.com/galaxyproject/galaxy/commit/a5fa1b829a599bf33a5dd188d641… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-01-17 (Thu, 17 Jan 2019) Changed paths: M client/galaxy/style/scss/list-item.scss Log Message: ----------- remove underline from history datasets Commit: d0d64bf1d9491d74b73ca656ce9f5e1ed25a414e https://github.com/galaxyproject/galaxy/commit/d0d64bf1d9491d74b73ca656ce9f… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-02-06 (Wed, 06 Feb 2019) Changed paths: M client/galaxy/style/scss/list-item.scss Log Message: ----------- add underline on hover to history items Commit: b6a97619b457fb841a1910ef41d3f7db4b36e2c0 https://github.com/galaxyproject/galaxy/commit/b6a97619b457fb841a1910ef41d3… Author: Dannon <dannon.baker(a)gmail.com> Date: 2019-02-08 (Fri, 08 Feb 2019) Changed paths: M client/galaxy/style/scss/list-item.scss Log Message: ----------- Merge pull request #7235 from martenson/remove-underline remove underline from history datasets Compare: https://github.com/galaxyproject/galaxy/compare/09bca89259ca...b6a97619b457

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[galaxyproject/galaxy] 97d20b: Remove overlapping tooltip from dropdown button in...
by Martin Cech 08 Feb '19

08 Feb '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 97d20b4db7872394c9c103441d27fed8709b2574 https://github.com/galaxyproject/galaxy/commit/97d20b4db7872394c9c103441d27… Author: guerler <aysam.guerler(a)gmail.com> Date: 2019-02-07 (Thu, 07 Feb 2019) Changed paths: M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js Log Message: ----------- Remove overlapping tooltip from dropdown button in library toolbar Commit: 09bca89259ca2b31af030b416dfbc2a560dda0ff https://github.com/galaxyproject/galaxy/commit/09bca89259ca2b31af030b416dfb… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-02-08 (Fri, 08 Feb 2019) Changed paths: M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js Log Message: ----------- Merge pull request #7321 from guerler/fix_tooltip_library Remove overlapping tooltip from dropdown button in library toolbar Compare: https://github.com/galaxyproject/galaxy/compare/edbab28e01b8...09bca89259ca

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[galaxyproject/galaxy] 1d19fd: Add note about HTTP Range also to Apache docs
by Dannon 08 Feb '19

08 Feb '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 1d19fd535ab39a89f7a957e28116c8f83fdcc241 https://github.com/galaxyproject/galaxy/commit/1d19fd535ab39a89f7a957e28116… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-02-08 (Fri, 08 Feb 2019) Changed paths: M doc/source/admin/apache.md M doc/source/admin/nginx.md Log Message: ----------- Add note about HTTP Range also to Apache docs Commit: edbab28e01b82055dfe763c9c78d2dc25c1c86f8 https://github.com/galaxyproject/galaxy/commit/edbab28e01b82055dfe763c9c78d… Author: Dannon <dannon.baker(a)gmail.com> Date: 2019-02-07 (Thu, 07 Feb 2019) Changed paths: M doc/source/admin/apache.md M doc/source/admin/nginx.md Log Message: ----------- Merge pull request #7334 from nsoranzo/followup_on_7323 Add note about HTTP Range also to Apache docs Compare: https://github.com/galaxyproject/galaxy/compare/a1f188b79545...edbab28e01b8

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[galaxyproject/galaxy] 0a7583: More contrast
by Nate Coraor 07 Feb '19

07 Feb '19

Branch: refs/heads/release_19.01 Home: https://github.com/galaxyproject/galaxy Commit: 0a7583b6de024d02b7063fa3f59c7febe63df5f5 https://github.com/galaxyproject/galaxy/commit/0a7583b6de024d02b7063fa3f59c… Author: Helena Rasche <hxr(a)hx42.org> Date: 2019-02-06 (Wed, 06 Feb 2019) Changed paths: M client/galaxy/style/scss/base.scss M client/galaxy/style/scss/theme/blue.scss Log Message: ----------- More contrast Commit: 87c82595771438b0e8244b32885430e4fe1bab6e https://github.com/galaxyproject/galaxy/commit/87c82595771438b0e8244b328854… Author: Helena Rasche <hxr(a)hx42.org> Date: 2019-02-06 (Wed, 06 Feb 2019) Changed paths: M client/galaxy/style/scss/base.scss Log Message: ----------- Add box-shadow Commit: 12fde52494541d73da42a41d026c8a0217d7533c https://github.com/galaxyproject/galaxy/commit/12fde52494541d73da42a41d026c… Author: Helena Rasche <hxr(a)hx42.org> Date: 2019-02-06 (Wed, 06 Feb 2019) Changed paths: M client/galaxy/style/scss/theme/blue.scss Log Message: ----------- remove inaccurate comment Commit: 23d4af5dafbb768ba61c6cf8849cd17087f31520 https://github.com/galaxyproject/galaxy/commit/23d4af5dafbb768ba61c6cf8849c… Author: Helena Rasche <hxr(a)hx42.org> Date: 2019-02-06 (Wed, 06 Feb 2019) Changed paths: M client/galaxy/style/scss/base.scss Log Message: ----------- Revert "Add box-shadow" This reverts commit 87c82595771438b0e8244b32885430e4fe1bab6e. Commit: f0026962219ebad2177f57ebee5ae9b837882e60 https://github.com/galaxyproject/galaxy/commit/f0026962219ebad2177f57ebee5a… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2019-02-07 (Thu, 07 Feb 2019) Changed paths: M client/galaxy/style/scss/base.scss M client/galaxy/style/scss/theme/blue.scss Log Message: ----------- Merge pull request #7309 from erasche/more-contrast [19.01] More contrast in CSS Compare: https://github.com/galaxyproject/galaxy/compare/8f7263a1dcce...f0026962219e

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[galaxyproject/galaxy] 041152: Add note about Range support
by Dannon 07 Feb '19

07 Feb '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 041152bd146e3c3fa0a1904a513b0ddab681eedd https://github.com/galaxyproject/galaxy/commit/041152bd146e3c3fa0a1904a513b… Author: pvanheus <pvh(a)sanbi.ac.za> Date: 2019-02-07 (Thu, 07 Feb 2019) Changed paths: M doc/source/admin/nginx.md Log Message: ----------- Add note about Range support Add note explaining that nginx sendfile support is required for Range (and thus IGV/JBrowse) to work. Commit: a1f188b79545debd3828469a7f0f9b8a8b5535b2 https://github.com/galaxyproject/galaxy/commit/a1f188b79545debd3828469a7f0f… Author: Dannon <dannon.baker(a)gmail.com> Date: 2019-02-07 (Thu, 07 Feb 2019) Changed paths: M doc/source/admin/nginx.md Log Message: ----------- Merge pull request #7323 from pvanheus/patch-12 Add note about Range support Compare: https://github.com/galaxyproject/galaxy/compare/e0cfaa452e2c...a1f188b79545

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