Branch: refs/heads/master
Home: https://github.com/galaxyproject/infrastructure-playbook
Commit: d52874f9e445bf86950e3beb7945f212ead2c9fb
https://github.com/galaxyproject/infrastructure-playbook/commit/d52874f9e44…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2019-02-22 (Fri, 22 Feb 2019)
Changed paths:
A env/mailman/TODO.txt
A env/mailman/baseenv.yml
A env/mailman/bootstrap.yml
A env/mailman/files/ssl
A env/mailman/group_vars/all.yml
A env/mailman/group_vars/listservers.yml
A env/mailman/group_vars/mailservers-mx.yml
A env/mailman/group_vars/sslservers
A env/mailman/inventory
A env/mailman/listservers.yml
A env/mailman/mailservers.yml
A env/mailman/playbook.yml
A env/mailman/templates/nginx/anvil-lists.j2
A env/mailman/templates/nginx/galaxy-lists.j2
A env/mailman/templates/nginx/mailman.j2
A env/mailman/templates/postfix/relay_restrictions.j2
A env/mailman/webservers.yml
Log Message:
-----------
WIP Mailman 3 server
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: b6d5675f5da1e91aece2df4af5d037072e897185
https://github.com/galaxyproject/galaxy/commit/b6d5675f5da1e91aece2df4af5d0…
Author: mvdbeek <m.vandenbeek(a)gmail.com>
Date: 2019-01-15 (Tue, 15 Jan 2019)
Changed paths:
M config/galaxy.yml.sample
M config/reports.yml.sample
M config/tool_shed.yml.sample
M doc/source/admin/galaxy_options.rst
M lib/galaxy/webapps/config_manage.py
M lib/galaxy/webapps/galaxy/config_schema.yml
Log Message:
-----------
Update galaxy.yml.sample for prefix config
Commit: ae8bf6f793edda9211b59c68d6c029b9fa74154a
https://github.com/galaxyproject/galaxy/commit/ae8bf6f793edda9211b59c68d6c0…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2019-02-05 (Tue, 05 Feb 2019)
Changed paths:
A doc/source/releases/19.01.rst
M doc/source/releases/19.01_announce.rst
A doc/source/releases/19.05_announce.rst
Log Message:
-----------
Release notes raw.
Commit: b5713ca170cfeb574063a2ec9dca8adbee1f7d74
https://github.com/galaxyproject/galaxy/commit/b5713ca170cfeb574063a2ec9dca…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2019-02-05 (Tue, 05 Feb 2019)
Changed paths:
M doc/source/releases/19.01.rst
M doc/source/releases/19.01_announce.rst
M doc/source/releases/index.rst
Log Message:
-----------
Progress on 19.01 release notes...
Commit: 16af73423f2c5a1181b016dcc01955c1c2ab037a
https://github.com/galaxyproject/galaxy/commit/16af73423f2c5a1181b016dcc019…
Author: Marius van den Beek <m.vandenbeek(a)gmail.com>
Date: 2019-02-18 (Mon, 18 Feb 2019)
Changed paths:
M doc/source/releases/19.01.rst
Log Message:
-----------
Update doc/source/releases/19.01.rst
Co-Authored-By: jmchilton <jmchilton(a)gmail.com>
Commit: 072b8d73eca68201bcf691c7dc9fa22272433ac3
https://github.com/galaxyproject/galaxy/commit/072b8d73eca68201bcf691c7dc9f…
Author: Marius van den Beek <m.vandenbeek(a)gmail.com>
Date: 2019-02-18 (Mon, 18 Feb 2019)
Changed paths:
M doc/source/releases/19.01.rst
Log Message:
-----------
Update doc/source/releases/19.01.rst
Co-Authored-By: jmchilton <jmchilton(a)gmail.com>
Commit: 2a3555d9d73e4a9f72b003a319698f7e8fb01d3c
https://github.com/galaxyproject/galaxy/commit/2a3555d9d73e4a9f72b003a31969…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2019-02-18 (Mon, 18 Feb 2019)
Changed paths:
M doc/source/releases/19.01.rst
M doc/source/releases/19.01_announce.rst
Log Message:
-----------
Better Singularity summary thanks to @mvdbeek.
Commit: 94bcb8d00f3fc8817cdca5ef3ab383e705b950d6
https://github.com/galaxyproject/galaxy/commit/94bcb8d00f3fc8817cdca5ef3ab3…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2019-02-18 (Mon, 18 Feb 2019)
Changed paths:
M doc/source/releases/19.01.rst
Log Message:
-----------
More fixes to 19.01 release notes.
Commit: ca4acf78df6cfc89f76b0f09143d0301aac234b4
https://github.com/galaxyproject/galaxy/commit/ca4acf78df6cfc89f76b0f09143d…
Author: Nicola Soranzo <nicola.soranzo(a)gmail.com>
Date: 2019-02-18 (Mon, 18 Feb 2019)
Changed paths:
M doc/source/releases/19.01_announce.rst
Log Message:
-----------
Sort PR numbers
Small fixes.
Commit: 37a93972d59459ffd50d340d53c5f278b3e15dae
https://github.com/galaxyproject/galaxy/commit/37a93972d59459ffd50d340d53c5…
Author: Nicola Soranzo <nicola.soranzo(a)gmail.com>
Date: 2019-02-18 (Mon, 18 Feb 2019)
Changed paths:
M doc/source/releases/19.01.rst
Log Message:
-----------
Fix PR link
Commit: d72f82de98f464ace59db312fe9db398793c3494
https://github.com/galaxyproject/galaxy/commit/d72f82de98f464ace59db312fe9d…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2019-02-19 (Tue, 19 Feb 2019)
Changed paths:
M config/galaxy.yml.sample
M config/reports.yml.sample
M config/tool_shed.yml.sample
M doc/source/admin/galaxy_options.rst
M lib/galaxy/webapps/config_manage.py
M lib/galaxy/webapps/galaxy/config_schema.yml
Log Message:
-----------
remove Paste config option, reword URL prefix
Commit: 6d24026ba59fbe3e534067cd8dce76d4e6a2f38f
https://github.com/galaxyproject/galaxy/commit/6d24026ba59fbe3e534067cd8dce…
Author: Marius van den Beek <m.vandenbeek(a)gmail.com>
Date: 2019-02-19 (Tue, 19 Feb 2019)
Changed paths:
M config/galaxy.yml.sample
M config/reports.yml.sample
M config/tool_shed.yml.sample
M doc/source/admin/galaxy_options.rst
M lib/galaxy/webapps/config_manage.py
M lib/galaxy/webapps/galaxy/config_schema.yml
Log Message:
-----------
Merge pull request #11 from martenson/fix_galaxy_yml_prefix_comments
remove Paste config option, reword URL prefix
Commit: b4fc7c19a80c38b595cb08f05fd6765a07f95920
https://github.com/galaxyproject/galaxy/commit/b4fc7c19a80c38b595cb08f05fd6…
Author: mvdbeek <m.vandenbeek(a)gmail.com>
Date: 2019-02-20 (Wed, 20 Feb 2019)
Changed paths:
M lib/galaxy/tools/__init__.py
Log Message:
-----------
Report line number mismatch in sort collection tool
Otherwise this would just fail because sorted_elements is undefined.
I don't think there can be a HDA without metadata, so I've dropped
that check.
Commit: 015ce5cedc21c1a318d6455534f52f8acc3d36ca
https://github.com/galaxyproject/galaxy/commit/015ce5cedc21c1a318d6455534f5…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2019-02-20 (Wed, 20 Feb 2019)
Changed paths:
A doc/source/releases/19.01.rst
M doc/source/releases/19.01_announce.rst
A doc/source/releases/19.05_announce.rst
M doc/source/releases/index.rst
Log Message:
-----------
Merge pull request #7308 from jmchilton/19.01_release_notes
[19.01] Release notes for 19.01.
Commit: 648d01685bf26c9dcb5231cc61755d95a4696928
https://github.com/galaxyproject/galaxy/commit/648d01685bf26c9dcb5231cc6175…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2019-02-20 (Wed, 20 Feb 2019)
Changed paths:
M lib/galaxy/tools/__init__.py
Log Message:
-----------
Merge pull request #7390 from mvdbeek/more_useful_error_message
[19.01] Report line number mismatch in sort collection tool
Commit: 8c9c27b7f6bd14581af870b0d38339d90501e464
https://github.com/galaxyproject/galaxy/commit/8c9c27b7f6bd14581af870b0d383…
Author: mvdbeek <m.vandenbeek(a)gmail.com>
Date: 2019-02-21 (Thu, 21 Feb 2019)
Changed paths:
M config/galaxy.yml.sample
M doc/source/admin/galaxy_options.rst
Log Message:
-----------
Drop filter-with from docs / .sample
Commit: 726ad9a0f68d134d7bc2ffa37ad3f369787d19da
https://github.com/galaxyproject/galaxy/commit/726ad9a0f68d134d7bc2ffa37ad3…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2019-02-21 (Thu, 21 Feb 2019)
Changed paths:
M Makefile
M scripts/common_startup.sh
Log Message:
-----------
Bump yarn's network timeout from 2 minutes to 5 minutes.
Commit: 4ad4fe59be7bbcc1917d3a1e039fa3f3a8367709
https://github.com/galaxyproject/galaxy/commit/4ad4fe59be7bbcc1917d3a1e039f…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2019-02-21 (Thu, 21 Feb 2019)
Changed paths:
M Makefile
M scripts/common_startup.sh
Log Message:
-----------
Merge pull request #7399 from dannon/bump_yarn_network_tolerance
[19.01] Bump yarn network tolerance
Commit: 1a0f067590d8dcd88857e38d58f62b95a467c641
https://github.com/galaxyproject/galaxy/commit/1a0f067590d8dcd88857e38d58f6…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2019-02-21 (Thu, 21 Feb 2019)
Changed paths:
M config/galaxy.yml.sample
M doc/source/admin/galaxy_options.rst
M lib/galaxy/webapps/galaxy/config_schema.yml
Log Message:
-----------
change config schema to reflect removing paste options
Commit: 351c188830793946ce6fa71dfaab95fe3af7cf7a
https://github.com/galaxyproject/galaxy/commit/351c188830793946ce6fa71dfaab…
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2019-02-22 (Fri, 22 Feb 2019)
Changed paths:
M config/galaxy.yml.sample
M config/reports.yml.sample
M config/tool_shed.yml.sample
M doc/source/admin/galaxy_options.rst
M doc/source/admin/reports_options.rst
M lib/galaxy/webapps/galaxy/config_schema.yml
M lib/galaxy/webapps/reports/config_schema.yml
M lib/galaxy/webapps/tool_shed/config_schema.yml
Log Message:
-----------
Remove ``filter-with`` and update ``cookie_path`` options also for Tool Shed and Reports
Commit: a83eb67775442f37b22ff20203b88a234ab11bec
https://github.com/galaxyproject/galaxy/commit/a83eb67775442f37b22ff20203b8…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2019-02-22 (Fri, 22 Feb 2019)
Changed paths:
M config/galaxy.yml.sample
M config/reports.yml.sample
M config/tool_shed.yml.sample
M doc/source/admin/galaxy_options.rst
M doc/source/admin/reports_options.rst
M lib/galaxy/webapps/galaxy/config_schema.yml
M lib/galaxy/webapps/reports/config_schema.yml
M lib/galaxy/webapps/tool_shed/config_schema.yml
Log Message:
-----------
Slight rewording of the cookie_path option description, and corrections
to file_path and new_file_path descriptions.
Commit: 5fc5b4aaab373d344f6d286e9dab4b2ce78f98eb
https://github.com/galaxyproject/galaxy/commit/5fc5b4aaab373d344f6d286e9dab…
Author: Marius van den Beek <m.vandenbeek(a)gmail.com>
Date: 2019-02-22 (Fri, 22 Feb 2019)
Changed paths:
M config/galaxy.yml.sample
M config/reports.yml.sample
M config/tool_shed.yml.sample
M doc/source/admin/galaxy_options.rst
M doc/source/admin/reports_options.rst
M lib/galaxy/webapps/galaxy/config_schema.yml
M lib/galaxy/webapps/reports/config_schema.yml
M lib/galaxy/webapps/tool_shed/config_schema.yml
Log Message:
-----------
Merge pull request #12 from natefoo/mvdbeek-fix_galaxy_yml_prefix_comments
Slight rewording of the cookie_path option description, and corrections to file_path and new_file_path descriptions
Commit: 656b3c2f87a0dfd49284e113d7df6f2b88b43464
https://github.com/galaxyproject/galaxy/commit/656b3c2f87a0dfd49284e113d7df…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2019-02-22 (Fri, 22 Feb 2019)
Changed paths:
M lib/galaxy/webapps/galaxy/controllers/dataset.py
Log Message:
-----------
Refactor dataset fetching in get/set dataset method in web controller.
Commit: 1529758ecb781a8bcbfe727acad9e7f2209c824b
https://github.com/galaxyproject/galaxy/commit/1529758ecb781a8bcbfe727acad9…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2019-02-22 (Fri, 22 Feb 2019)
Changed paths:
M lib/galaxy/webapps/galaxy/controllers/dataset.py
Log Message:
-----------
Merge branch 'release_18.01' into release_18.05
Commit: 2f973ac7fa7726ff309a8a8893962fbcd58ffded
https://github.com/galaxyproject/galaxy/commit/2f973ac7fa7726ff309a8a889396…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2019-02-22 (Fri, 22 Feb 2019)
Changed paths:
M lib/galaxy/webapps/galaxy/controllers/dataset.py
Log Message:
-----------
Merge branch 'release_18.05' into release_18.09
Commit: 8651e1eea3779233c1dff3c28ae7b4a0c3fb9735
https://github.com/galaxyproject/galaxy/commit/8651e1eea3779233c1dff3c28ae7…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2019-02-22 (Fri, 22 Feb 2019)
Changed paths:
M lib/galaxy/webapps/galaxy/controllers/dataset.py
Log Message:
-----------
Merge branch 'release_18.09' into release_19.01
Commit: 9b72f5a880e39d1a3fd99d8aa6b1509f4e8d6ad1
https://github.com/galaxyproject/galaxy/commit/9b72f5a880e39d1a3fd99d8aa6b1…
Author: Nicola Soranzo <nicola.soranzo(a)gmail.com>
Date: 2019-02-22 (Fri, 22 Feb 2019)
Changed paths:
M config/galaxy.yml.sample
M config/reports.yml.sample
M config/tool_shed.yml.sample
M doc/source/admin/galaxy_options.rst
M doc/source/admin/reports_options.rst
M lib/galaxy/webapps/config_manage.py
M lib/galaxy/webapps/galaxy/config_schema.yml
M lib/galaxy/webapps/reports/config_schema.yml
M lib/galaxy/webapps/tool_shed/config_schema.yml
Log Message:
-----------
Merge pull request #7216 from mvdbeek/fix_galaxy_yml_prefix_comments
[18.09] Update configuration samples
Commit: 808aa5bef7fb5e0aa24818cc4bd9da647ccd3f01
https://github.com/galaxyproject/galaxy/commit/808aa5bef7fb5e0aa24818cc4bd9…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2019-02-22 (Fri, 22 Feb 2019)
Changed paths:
M config/galaxy.yml.sample
M config/reports.yml.sample
M config/tool_shed.yml.sample
M doc/source/admin/galaxy_options.rst
M doc/source/admin/reports_options.rst
M lib/galaxy/webapps/config_manage.py
M lib/galaxy/webapps/galaxy/config_schema.yml
M lib/galaxy/webapps/reports/config_schema.yml
M lib/galaxy/webapps/tool_shed/config_schema.yml
Log Message:
-----------
Merge remote-tracking branch 'upstream/release_18.09' into release_19.01
Commit: ef8f208002993b4e2051a8851e0bdcad804ee339
https://github.com/galaxyproject/galaxy/commit/ef8f208002993b4e2051a8851e0b…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2019-02-22 (Fri, 22 Feb 2019)
Changed paths:
M Makefile
M config/galaxy.yml.sample
M config/reports.yml.sample
M config/tool_shed.yml.sample
M doc/source/admin/galaxy_options.rst
M doc/source/admin/reports_options.rst
A doc/source/releases/19.01.rst
M doc/source/releases/19.01_announce.rst
A doc/source/releases/19.05_announce.rst
M doc/source/releases/index.rst
M lib/galaxy/tools/__init__.py
M lib/galaxy/webapps/config_manage.py
M lib/galaxy/webapps/galaxy/config_schema.yml
M lib/galaxy/webapps/reports/config_schema.yml
M lib/galaxy/webapps/tool_shed/config_schema.yml
M scripts/common_startup.sh
Log Message:
-----------
Merge remote-tracking branch 'upstream/release_19.01' into dev
Compare: https://github.com/galaxyproject/galaxy/compare/830c21d6f5ef...ef8f20800299
Branch: refs/heads/release_19.01
Home: https://github.com/galaxyproject/galaxy
Commit: b6d5675f5da1e91aece2df4af5d037072e897185
https://github.com/galaxyproject/galaxy/commit/b6d5675f5da1e91aece2df4af5d0…
Author: mvdbeek <m.vandenbeek(a)gmail.com>
Date: 2019-01-15 (Tue, 15 Jan 2019)
Changed paths:
M config/galaxy.yml.sample
M config/reports.yml.sample
M config/tool_shed.yml.sample
M doc/source/admin/galaxy_options.rst
M lib/galaxy/webapps/config_manage.py
M lib/galaxy/webapps/galaxy/config_schema.yml
Log Message:
-----------
Update galaxy.yml.sample for prefix config
Commit: d72f82de98f464ace59db312fe9db398793c3494
https://github.com/galaxyproject/galaxy/commit/d72f82de98f464ace59db312fe9d…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2019-02-19 (Tue, 19 Feb 2019)
Changed paths:
M config/galaxy.yml.sample
M config/reports.yml.sample
M config/tool_shed.yml.sample
M doc/source/admin/galaxy_options.rst
M lib/galaxy/webapps/config_manage.py
M lib/galaxy/webapps/galaxy/config_schema.yml
Log Message:
-----------
remove Paste config option, reword URL prefix
Commit: 6d24026ba59fbe3e534067cd8dce76d4e6a2f38f
https://github.com/galaxyproject/galaxy/commit/6d24026ba59fbe3e534067cd8dce…
Author: Marius van den Beek <m.vandenbeek(a)gmail.com>
Date: 2019-02-19 (Tue, 19 Feb 2019)
Changed paths:
M config/galaxy.yml.sample
M config/reports.yml.sample
M config/tool_shed.yml.sample
M doc/source/admin/galaxy_options.rst
M lib/galaxy/webapps/config_manage.py
M lib/galaxy/webapps/galaxy/config_schema.yml
Log Message:
-----------
Merge pull request #11 from martenson/fix_galaxy_yml_prefix_comments
remove Paste config option, reword URL prefix
Commit: 8c9c27b7f6bd14581af870b0d38339d90501e464
https://github.com/galaxyproject/galaxy/commit/8c9c27b7f6bd14581af870b0d383…
Author: mvdbeek <m.vandenbeek(a)gmail.com>
Date: 2019-02-21 (Thu, 21 Feb 2019)
Changed paths:
M config/galaxy.yml.sample
M doc/source/admin/galaxy_options.rst
Log Message:
-----------
Drop filter-with from docs / .sample
Commit: 1a0f067590d8dcd88857e38d58f62b95a467c641
https://github.com/galaxyproject/galaxy/commit/1a0f067590d8dcd88857e38d58f6…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2019-02-21 (Thu, 21 Feb 2019)
Changed paths:
M config/galaxy.yml.sample
M doc/source/admin/galaxy_options.rst
M lib/galaxy/webapps/galaxy/config_schema.yml
Log Message:
-----------
change config schema to reflect removing paste options
Commit: 351c188830793946ce6fa71dfaab95fe3af7cf7a
https://github.com/galaxyproject/galaxy/commit/351c188830793946ce6fa71dfaab…
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2019-02-22 (Fri, 22 Feb 2019)
Changed paths:
M config/galaxy.yml.sample
M config/reports.yml.sample
M config/tool_shed.yml.sample
M doc/source/admin/galaxy_options.rst
M doc/source/admin/reports_options.rst
M lib/galaxy/webapps/galaxy/config_schema.yml
M lib/galaxy/webapps/reports/config_schema.yml
M lib/galaxy/webapps/tool_shed/config_schema.yml
Log Message:
-----------
Remove ``filter-with`` and update ``cookie_path`` options also for Tool Shed and Reports
Commit: a83eb67775442f37b22ff20203b88a234ab11bec
https://github.com/galaxyproject/galaxy/commit/a83eb67775442f37b22ff20203b8…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2019-02-22 (Fri, 22 Feb 2019)
Changed paths:
M config/galaxy.yml.sample
M config/reports.yml.sample
M config/tool_shed.yml.sample
M doc/source/admin/galaxy_options.rst
M doc/source/admin/reports_options.rst
M lib/galaxy/webapps/galaxy/config_schema.yml
M lib/galaxy/webapps/reports/config_schema.yml
M lib/galaxy/webapps/tool_shed/config_schema.yml
Log Message:
-----------
Slight rewording of the cookie_path option description, and corrections
to file_path and new_file_path descriptions.
Commit: 5fc5b4aaab373d344f6d286e9dab4b2ce78f98eb
https://github.com/galaxyproject/galaxy/commit/5fc5b4aaab373d344f6d286e9dab…
Author: Marius van den Beek <m.vandenbeek(a)gmail.com>
Date: 2019-02-22 (Fri, 22 Feb 2019)
Changed paths:
M config/galaxy.yml.sample
M config/reports.yml.sample
M config/tool_shed.yml.sample
M doc/source/admin/galaxy_options.rst
M doc/source/admin/reports_options.rst
M lib/galaxy/webapps/galaxy/config_schema.yml
M lib/galaxy/webapps/reports/config_schema.yml
M lib/galaxy/webapps/tool_shed/config_schema.yml
Log Message:
-----------
Merge pull request #12 from natefoo/mvdbeek-fix_galaxy_yml_prefix_comments
Slight rewording of the cookie_path option description, and corrections to file_path and new_file_path descriptions
Commit: 9b72f5a880e39d1a3fd99d8aa6b1509f4e8d6ad1
https://github.com/galaxyproject/galaxy/commit/9b72f5a880e39d1a3fd99d8aa6b1…
Author: Nicola Soranzo <nicola.soranzo(a)gmail.com>
Date: 2019-02-22 (Fri, 22 Feb 2019)
Changed paths:
M config/galaxy.yml.sample
M config/reports.yml.sample
M config/tool_shed.yml.sample
M doc/source/admin/galaxy_options.rst
M doc/source/admin/reports_options.rst
M lib/galaxy/webapps/config_manage.py
M lib/galaxy/webapps/galaxy/config_schema.yml
M lib/galaxy/webapps/reports/config_schema.yml
M lib/galaxy/webapps/tool_shed/config_schema.yml
Log Message:
-----------
Merge pull request #7216 from mvdbeek/fix_galaxy_yml_prefix_comments
[18.09] Update configuration samples
Commit: 808aa5bef7fb5e0aa24818cc4bd9da647ccd3f01
https://github.com/galaxyproject/galaxy/commit/808aa5bef7fb5e0aa24818cc4bd9…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2019-02-22 (Fri, 22 Feb 2019)
Changed paths:
M config/galaxy.yml.sample
M config/reports.yml.sample
M config/tool_shed.yml.sample
M doc/source/admin/galaxy_options.rst
M doc/source/admin/reports_options.rst
M lib/galaxy/webapps/config_manage.py
M lib/galaxy/webapps/galaxy/config_schema.yml
M lib/galaxy/webapps/reports/config_schema.yml
M lib/galaxy/webapps/tool_shed/config_schema.yml
Log Message:
-----------
Merge remote-tracking branch 'upstream/release_18.09' into release_19.01
Compare: https://github.com/galaxyproject/galaxy/compare/8651e1eea377...808aa5bef7fb
Branch: refs/heads/release_18.09
Home: https://github.com/galaxyproject/galaxy
Commit: b6d5675f5da1e91aece2df4af5d037072e897185
https://github.com/galaxyproject/galaxy/commit/b6d5675f5da1e91aece2df4af5d0…
Author: mvdbeek <m.vandenbeek(a)gmail.com>
Date: 2019-01-15 (Tue, 15 Jan 2019)
Changed paths:
M config/galaxy.yml.sample
M config/reports.yml.sample
M config/tool_shed.yml.sample
M doc/source/admin/galaxy_options.rst
M lib/galaxy/webapps/config_manage.py
M lib/galaxy/webapps/galaxy/config_schema.yml
Log Message:
-----------
Update galaxy.yml.sample for prefix config
Commit: d72f82de98f464ace59db312fe9db398793c3494
https://github.com/galaxyproject/galaxy/commit/d72f82de98f464ace59db312fe9d…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2019-02-19 (Tue, 19 Feb 2019)
Changed paths:
M config/galaxy.yml.sample
M config/reports.yml.sample
M config/tool_shed.yml.sample
M doc/source/admin/galaxy_options.rst
M lib/galaxy/webapps/config_manage.py
M lib/galaxy/webapps/galaxy/config_schema.yml
Log Message:
-----------
remove Paste config option, reword URL prefix
Commit: 6d24026ba59fbe3e534067cd8dce76d4e6a2f38f
https://github.com/galaxyproject/galaxy/commit/6d24026ba59fbe3e534067cd8dce…
Author: Marius van den Beek <m.vandenbeek(a)gmail.com>
Date: 2019-02-19 (Tue, 19 Feb 2019)
Changed paths:
M config/galaxy.yml.sample
M config/reports.yml.sample
M config/tool_shed.yml.sample
M doc/source/admin/galaxy_options.rst
M lib/galaxy/webapps/config_manage.py
M lib/galaxy/webapps/galaxy/config_schema.yml
Log Message:
-----------
Merge pull request #11 from martenson/fix_galaxy_yml_prefix_comments
remove Paste config option, reword URL prefix
Commit: 8c9c27b7f6bd14581af870b0d38339d90501e464
https://github.com/galaxyproject/galaxy/commit/8c9c27b7f6bd14581af870b0d383…
Author: mvdbeek <m.vandenbeek(a)gmail.com>
Date: 2019-02-21 (Thu, 21 Feb 2019)
Changed paths:
M config/galaxy.yml.sample
M doc/source/admin/galaxy_options.rst
Log Message:
-----------
Drop filter-with from docs / .sample
Commit: 1a0f067590d8dcd88857e38d58f62b95a467c641
https://github.com/galaxyproject/galaxy/commit/1a0f067590d8dcd88857e38d58f6…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2019-02-21 (Thu, 21 Feb 2019)
Changed paths:
M config/galaxy.yml.sample
M doc/source/admin/galaxy_options.rst
M lib/galaxy/webapps/galaxy/config_schema.yml
Log Message:
-----------
change config schema to reflect removing paste options
Commit: 351c188830793946ce6fa71dfaab95fe3af7cf7a
https://github.com/galaxyproject/galaxy/commit/351c188830793946ce6fa71dfaab…
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2019-02-22 (Fri, 22 Feb 2019)
Changed paths:
M config/galaxy.yml.sample
M config/reports.yml.sample
M config/tool_shed.yml.sample
M doc/source/admin/galaxy_options.rst
M doc/source/admin/reports_options.rst
M lib/galaxy/webapps/galaxy/config_schema.yml
M lib/galaxy/webapps/reports/config_schema.yml
M lib/galaxy/webapps/tool_shed/config_schema.yml
Log Message:
-----------
Remove ``filter-with`` and update ``cookie_path`` options also for Tool Shed and Reports
Commit: a83eb67775442f37b22ff20203b88a234ab11bec
https://github.com/galaxyproject/galaxy/commit/a83eb67775442f37b22ff20203b8…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2019-02-22 (Fri, 22 Feb 2019)
Changed paths:
M config/galaxy.yml.sample
M config/reports.yml.sample
M config/tool_shed.yml.sample
M doc/source/admin/galaxy_options.rst
M doc/source/admin/reports_options.rst
M lib/galaxy/webapps/galaxy/config_schema.yml
M lib/galaxy/webapps/reports/config_schema.yml
M lib/galaxy/webapps/tool_shed/config_schema.yml
Log Message:
-----------
Slight rewording of the cookie_path option description, and corrections
to file_path and new_file_path descriptions.
Commit: 5fc5b4aaab373d344f6d286e9dab4b2ce78f98eb
https://github.com/galaxyproject/galaxy/commit/5fc5b4aaab373d344f6d286e9dab…
Author: Marius van den Beek <m.vandenbeek(a)gmail.com>
Date: 2019-02-22 (Fri, 22 Feb 2019)
Changed paths:
M config/galaxy.yml.sample
M config/reports.yml.sample
M config/tool_shed.yml.sample
M doc/source/admin/galaxy_options.rst
M doc/source/admin/reports_options.rst
M lib/galaxy/webapps/galaxy/config_schema.yml
M lib/galaxy/webapps/reports/config_schema.yml
M lib/galaxy/webapps/tool_shed/config_schema.yml
Log Message:
-----------
Merge pull request #12 from natefoo/mvdbeek-fix_galaxy_yml_prefix_comments
Slight rewording of the cookie_path option description, and corrections to file_path and new_file_path descriptions
Commit: 9b72f5a880e39d1a3fd99d8aa6b1509f4e8d6ad1
https://github.com/galaxyproject/galaxy/commit/9b72f5a880e39d1a3fd99d8aa6b1…
Author: Nicola Soranzo <nicola.soranzo(a)gmail.com>
Date: 2019-02-22 (Fri, 22 Feb 2019)
Changed paths:
M config/galaxy.yml.sample
M config/reports.yml.sample
M config/tool_shed.yml.sample
M doc/source/admin/galaxy_options.rst
M doc/source/admin/reports_options.rst
M lib/galaxy/webapps/config_manage.py
M lib/galaxy/webapps/galaxy/config_schema.yml
M lib/galaxy/webapps/reports/config_schema.yml
M lib/galaxy/webapps/tool_shed/config_schema.yml
Log Message:
-----------
Merge pull request #7216 from mvdbeek/fix_galaxy_yml_prefix_comments
[18.09] Update configuration samples
Compare: https://github.com/galaxyproject/galaxy/compare/2f973ac7fa77...9b72f5a880e3