galaxy-commits March 2019

galaxy-commits@lists.galaxyproject.org

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64 discussions

[galaxyproject/galaxy] bf8dbd: Slim down testing image
by Martin Cech 04 Mar '19

04 Mar '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: bf8dbdade3b009d7bd0822b657374b992342a466 https://github.com/galaxyproject/galaxy/commit/bf8dbdade3b009d7bd0822b65737… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M test/docker/base/Dockerfile Log Message: ----------- Slim down testing image Commit: d9ac24a9828daa00120da3014634c38a34e1934b https://github.com/galaxyproject/galaxy/commit/d9ac24a9828daa00120da3014634… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M test/docker/base/Dockerfile Log Message: ----------- Don't install slurm, it isn't used in any test Commit: 3bed43fb841a371ab350406dc8b01dd5ce55dad8 https://github.com/galaxyproject/galaxy/commit/3bed43fb841a371ab350406dc8b0… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M test/docker/base/Dockerfile Log Message: ----------- Don't add compiler-stack (will still come in ansible), use prebuilt singularity Commit: a0fd6438d99d55a5337fc5fbdf2a8629b2779c4b https://github.com/galaxyproject/galaxy/commit/a0fd6438d99d55a5337fc5fbdf2a… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M test/docker/base/ansible_vars.yml Log Message: ----------- Directlyy setup virtualenv in /galaxy_venv, saves 700MB Commit: c357d303fe57a685cf57895bac9070828c81bbec https://github.com/galaxyproject/galaxy/commit/c357d303fe57a685cf57895bac90… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M run_tests.sh Log Message: ----------- Test from new image Commit: 087070c72ce212cadedbd3dc5b2b2ae823b980c6 https://github.com/galaxyproject/galaxy/commit/087070c72ce212cadedbd3dc5b2b… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M test/docker/base/Dockerfile Log Message: ----------- Still need python3-dev for uwsgi Commit: 0455eb4f665dca2f9ba4d7129f31aeb2f2dbf579 https://github.com/galaxyproject/galaxy/commit/0455eb4f665dca2f9ba4d7129f31… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M run_tests.sh Log Message: ----------- Use newer image Commit: b0f3d921492870310ec50d240f5af397cca9b8d0 https://github.com/galaxyproject/galaxy/commit/b0f3d921492870310ec50d240f5a… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-02 (Sat, 02 Mar 2019) Changed paths: M test/base/integration_util.py M test/integration/test_containerized_jobs.py Log Message: ----------- Don't use skip_unless_docker decorator This is handled in setupClass. Also drop unused skip_unless_singularity. Commit: d5f3efbf08b07bdc2891c7b1c713f6ba2abe7c6e https://github.com/galaxyproject/galaxy/commit/d5f3efbf08b07bdc2891c7b1c713… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M run_tests.sh Log Message: ----------- Use new image from galaxy namespace Commit: 050f9b662c8e92e1a4c2386cb68145e2fc451aa1 https://github.com/galaxyproject/galaxy/commit/050f9b662c8e92e1a4c2386cb681… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M run_tests.sh M test/base/integration_util.py M test/docker/base/Dockerfile M test/docker/base/ansible_vars.yml M test/integration/test_containerized_jobs.py Log Message: ----------- Merge pull request #7439 from mvdbeek/new_testing_image New testing image Compare: https://github.com/galaxyproject/galaxy/compare/cb8c60168363...050f9b662c8e

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[galaxyproject/galaxy] 90c29f: Allow configuring user preferences location
by Nicola Soranzo 04 Mar '19

04 Mar '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 90c29fcaee81b11e15d3781e5a9a7bd2a75a8186 https://github.com/galaxyproject/galaxy/commit/90c29fcaee81b11e15d3781e5a9a… Author: Helena Rasche <hxr(a)hx42.org> Date: 2019-02-28 (Thu, 28 Feb 2019) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Allow configuring user preferences location Commit: 9fad329e3fa2d14314d8e608257e9c0bc1497f6b https://github.com/galaxyproject/galaxy/commit/9fad329e3fa2d14314d8e608257e… Author: Helena Rasche <hxr(a)hx42.org> Date: 2019-02-28 (Thu, 28 Feb 2019) Changed paths: M lib/galaxy/config.py M lib/galaxy/webapps/galaxy/api/users.py Log Message: ----------- Load at boot time and not runtime Commit: 2362f77a084a9e17c051730a6ed78fded20df1fa https://github.com/galaxyproject/galaxy/commit/2362f77a084a9e17c051730a6ed7… Author: Helena Rasche <hxr(a)hx42.org> Date: 2019-02-28 (Thu, 28 Feb 2019) Changed paths: M lib/galaxy/config.py Log Message: ----------- Remove default per @martenson suggestion Commit: 43a68a30ca1df4b1358bfad9014c18921958db07 https://github.com/galaxyproject/galaxy/commit/43a68a30ca1df4b1358bfad9014c… Author: Nicola Soranzo <nicola.soranzo(a)gmail.com> Date: 2019-02-28 (Thu, 28 Feb 2019) Changed paths: M lib/galaxy/config.py Log Message: ----------- Update lib/galaxy/config.py Co-Authored-By: erasche <hxr(a)hx42.org> Commit: c2d4645e213446cee21dd37063f4dc2df52ea462 https://github.com/galaxyproject/galaxy/commit/c2d4645e213446cee21dd37063f4… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-02-28 (Thu, 28 Feb 2019) Changed paths: M lib/galaxy/config.py Log Message: ----------- fix import ordering Commit: c533aa49f8ad9aaa569b2ffeaf8e666fd92c103f https://github.com/galaxyproject/galaxy/commit/c533aa49f8ad9aaa569b2ffeaf8e… Author: Helena Rasche <hxr(a)hx42.org> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Correct help per @nsoranzo request Commit: fa559f49a85968da3f775f0adbfe9d64aafb3195 https://github.com/galaxyproject/galaxy/commit/fa559f49a85968da3f775f0adbfe… Author: Helena Rasche <hxr(a)hx42.org> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M lib/galaxy/config.py Log Message: ----------- Merge branch 'user-prefs-location' of github.com:erasche/galaxy into user-prefs-location Commit: cb8c60168363479a8b3d976d828674aa5c0ff4dd https://github.com/galaxyproject/galaxy/commit/cb8c60168363479a8b3d976d8286… Author: Nicola Soranzo <nicola.soranzo(a)gmail.com> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/webapps/galaxy/api/users.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Merge pull request #7428 from erasche/user-prefs-location Allow configuration location of user preferences extra configuration Compare: https://github.com/galaxyproject/galaxy/compare/a5ff4eabc09a...cb8c60168363

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[galaxyproject/galaxy] c2c73f: Fix shallow clone on CircleCI for PRs
by Martin Cech 04 Mar '19

04 Mar '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: c2c73f624d6af5cc8d27d57dbdc14636f7eaa8a2 https://github.com/galaxyproject/galaxy/commit/c2c73f624d6af5cc8d27d57dbdc1… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M .circleci/config.yml Log Message: ----------- Fix shallow clone on CircleCI for PRs Commit: a5ff4eabc09a3ede79aae138de21c0cf4c70e943 https://github.com/galaxyproject/galaxy/commit/a5ff4eabc09a3ede79aae138de21… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M .circleci/config.yml Log Message: ----------- Merge pull request #7451 from nsoranzo/fix_circleci_PRs Fix shallow clone on CircleCI for PRs Compare: https://github.com/galaxyproject/galaxy/compare/d359c70a0ed5...a5ff4eabc09a

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[galaxyproject/ansible-galaxy] d07ef3: forgot another check mode
by Helena Rasche 04 Mar '19

04 Mar '19

Branch: refs/heads/check-mode Home: https://github.com/galaxyproject/ansible-galaxy Commit: d07ef3bae57904cde204551256d34aca0105925c https://github.com/galaxyproject/ansible-galaxy/commit/d07ef3bae57904cde204… Author: Helena Rasche <hxr(a)hx42.org> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M tasks/dependencies.yml Log Message: ----------- forgot another check mode

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[galaxyproject/galaxy] 338aae: Restore get_filename to galaxy.tools.verify:verify()
by John Chilton 04 Mar '19

04 Mar '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 338aae53f2ce2c0ddb4df9b259a24737efd07f3f https://github.com/galaxyproject/galaxy/commit/338aae53f2ce2c0ddb4df9b259a2… Author: John Chilton <jmchilton(a)gmail.com> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M lib/galaxy/tools/verify/__init__.py Log Message: ----------- Restore get_filename to galaxy.tools.verify:verify() Commit: d359c70a0ed533c43a75106ab4a448fa69d85c15 https://github.com/galaxyproject/galaxy/commit/d359c70a0ed533c43a75106ab4a4… Author: John Chilton <jmchilton(a)gmail.com> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M lib/galaxy/tools/verify/__init__.py Log Message: ----------- Merge pull request #7452 from jmchilton/restore_verify_getfilename Restore get_filename to galaxy.tools.verify:verify() Compare: https://github.com/galaxyproject/galaxy/compare/7017d92d1063...d359c70a0ed5

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[galaxyproject/galaxy] 5142d0: Fix loading workflows with steps without default l...
by Nicola Soranzo 03 Mar '19

03 Mar '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 5142d0df0732faaf5983d4bb2c025a89e93f5964 https://github.com/galaxyproject/galaxy/commit/5142d0df0732faaf5983d4bb2c02… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-02 (Sat, 02 Mar 2019) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Fix loading workflows with steps without default label Prior to https://github.com/galaxyproject/galaxy/pull/7422 we'd call str(default_label), so if `default_label` was None we'd get 'None'. Fixes part of https://github.com/galaxyproject/galaxy/issues/7447 Commit: bc8cf37d09b66efaa994735e994d69998ee34695 https://github.com/galaxyproject/galaxy/commit/bc8cf37d09b66efaa994735e994d… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-02 (Sat, 02 Mar 2019) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/tools/execute.py M lib/galaxy/webapps/config_manage.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Remove broken tool_submission_burst Commit: d96034062af9fc358b1c4f3964f0492d4000b3b8 https://github.com/galaxyproject/galaxy/commit/d96034062af9fc358b1c4f3964f0… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-02 (Sat, 02 Mar 2019) Changed paths: M lib/galaxy/tools/execute.py Log Message: ----------- fix lint Commit: 6c80ca50a44d75a675a08c466cbd78726cc64b90 https://github.com/galaxyproject/galaxy/commit/6c80ca50a44d75a675a08c466cbd… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/tools/execute.py M lib/galaxy/webapps/config_manage.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Merge pull request #7449 from mvdbeek/remove_broken_tool_submission_burst [18.09] Remove broken tool_submission_burst Commit: 996d7c9a60f037ca1e0120c201e74d2072c29d8d https://github.com/galaxyproject/galaxy/commit/996d7c9a60f037ca1e0120c201e7… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Merge pull request #7448 from mvdbeek/fix_when_default_label_is_none [18.09] Fix loading workflows with steps without default label Commit: 91e49acf374fe60b5c8a4dae2fbb448cc626019d https://github.com/galaxyproject/galaxy/commit/91e49acf374fe60b5c8a4dae2fbb… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/managers/workflows.py M lib/galaxy/tools/execute.py M lib/galaxy/webapps/config_manage.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Merge branch 'release_18.09' into release_19.01 Commit: 7017d92d1063b70906951541ce248f5eefe05907 https://github.com/galaxyproject/galaxy/commit/7017d92d1063b70906951541ce24… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/managers/workflows.py M lib/galaxy/tools/execute.py M lib/galaxy/webapps/config_manage.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Merge branch 'release_19.01' into dev Compare: https://github.com/galaxyproject/galaxy/compare/d04b32d0ac58...7017d92d1063

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[galaxyproject/galaxy] 5142d0: Fix loading workflows with steps without default l...
by Nicola Soranzo 03 Mar '19

03 Mar '19

Branch: refs/heads/release_19.01 Home: https://github.com/galaxyproject/galaxy Commit: 5142d0df0732faaf5983d4bb2c025a89e93f5964 https://github.com/galaxyproject/galaxy/commit/5142d0df0732faaf5983d4bb2c02… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-02 (Sat, 02 Mar 2019) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Fix loading workflows with steps without default label Prior to https://github.com/galaxyproject/galaxy/pull/7422 we'd call str(default_label), so if `default_label` was None we'd get 'None'. Fixes part of https://github.com/galaxyproject/galaxy/issues/7447 Commit: bc8cf37d09b66efaa994735e994d69998ee34695 https://github.com/galaxyproject/galaxy/commit/bc8cf37d09b66efaa994735e994d… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-02 (Sat, 02 Mar 2019) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/tools/execute.py M lib/galaxy/webapps/config_manage.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Remove broken tool_submission_burst Commit: d96034062af9fc358b1c4f3964f0492d4000b3b8 https://github.com/galaxyproject/galaxy/commit/d96034062af9fc358b1c4f3964f0… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-02 (Sat, 02 Mar 2019) Changed paths: M lib/galaxy/tools/execute.py Log Message: ----------- fix lint Commit: 6c80ca50a44d75a675a08c466cbd78726cc64b90 https://github.com/galaxyproject/galaxy/commit/6c80ca50a44d75a675a08c466cbd… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/tools/execute.py M lib/galaxy/webapps/config_manage.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Merge pull request #7449 from mvdbeek/remove_broken_tool_submission_burst [18.09] Remove broken tool_submission_burst Commit: 996d7c9a60f037ca1e0120c201e74d2072c29d8d https://github.com/galaxyproject/galaxy/commit/996d7c9a60f037ca1e0120c201e7… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Merge pull request #7448 from mvdbeek/fix_when_default_label_is_none [18.09] Fix loading workflows with steps without default label Commit: 91e49acf374fe60b5c8a4dae2fbb448cc626019d https://github.com/galaxyproject/galaxy/commit/91e49acf374fe60b5c8a4dae2fbb… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/managers/workflows.py M lib/galaxy/tools/execute.py M lib/galaxy/webapps/config_manage.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Merge branch 'release_18.09' into release_19.01 Compare: https://github.com/galaxyproject/galaxy/compare/739bb6310cdd...91e49acf374f

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[galaxyproject/galaxy] 5142d0: Fix loading workflows with steps without default l...
by Martin Cech 03 Mar '19

03 Mar '19

Branch: refs/heads/release_18.09 Home: https://github.com/galaxyproject/galaxy Commit: 5142d0df0732faaf5983d4bb2c025a89e93f5964 https://github.com/galaxyproject/galaxy/commit/5142d0df0732faaf5983d4bb2c02… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-02 (Sat, 02 Mar 2019) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Fix loading workflows with steps without default label Prior to https://github.com/galaxyproject/galaxy/pull/7422 we'd call str(default_label), so if `default_label` was None we'd get 'None'. Fixes part of https://github.com/galaxyproject/galaxy/issues/7447 Commit: 996d7c9a60f037ca1e0120c201e74d2072c29d8d https://github.com/galaxyproject/galaxy/commit/996d7c9a60f037ca1e0120c201e7… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Merge pull request #7448 from mvdbeek/fix_when_default_label_is_none [18.09] Fix loading workflows with steps without default label Compare: https://github.com/galaxyproject/galaxy/compare/6c80ca50a44d...996d7c9a60f0

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[galaxyproject/galaxy] bc8cf3: Remove broken tool_submission_burst
by Martin Cech 03 Mar '19

03 Mar '19

Branch: refs/heads/release_18.09 Home: https://github.com/galaxyproject/galaxy Commit: bc8cf37d09b66efaa994735e994d69998ee34695 https://github.com/galaxyproject/galaxy/commit/bc8cf37d09b66efaa994735e994d… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-02 (Sat, 02 Mar 2019) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/tools/execute.py M lib/galaxy/webapps/config_manage.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Remove broken tool_submission_burst Commit: d96034062af9fc358b1c4f3964f0492d4000b3b8 https://github.com/galaxyproject/galaxy/commit/d96034062af9fc358b1c4f3964f0… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-02 (Sat, 02 Mar 2019) Changed paths: M lib/galaxy/tools/execute.py Log Message: ----------- fix lint Commit: 6c80ca50a44d75a675a08c466cbd78726cc64b90 https://github.com/galaxyproject/galaxy/commit/6c80ca50a44d75a675a08c466cbd… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/tools/execute.py M lib/galaxy/webapps/config_manage.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Merge pull request #7449 from mvdbeek/remove_broken_tool_submission_burst [18.09] Remove broken tool_submission_burst Compare: https://github.com/galaxyproject/galaxy/compare/a12d9e367cae...6c80ca50a44d

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[galaxyproject/galaxy] f3afac: init circleci config
by Martin Cech 03 Mar '19

03 Mar '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: f3afacc3cf2bf3633f855807708d7093145de6b4 https://github.com/galaxyproject/galaxy/commit/f3afacc3cf2bf3633f855807708d… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-02-27 (Wed, 27 Feb 2019) Changed paths: A .circleci/config.yml Log Message: ----------- init circleci config limit builds to just one branch add sudo try shallow cloning indent yml clone to workdir add unit tests use workflow instead of parallel invocations maybe ym likes this? maybe like this really yaml? well that did not work yeye maybe like this? not like this like this for suuuure yep add unit tests run first startup add startup to workflow add more jobs add even more sudo all the things ALL THE THINGS I said add moar add js unit test things try like this sur elike this add cache for yarn usage add jslint to workflow use more aliases add python 35 first startup fix path to yarn lock more aliases Commit: fdfe30651e09f8d02211f986e0e0e6d84877801c https://github.com/galaxyproject/galaxy/commit/fdfe30651e09f8d02211f986e0e0… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-02-28 (Thu, 28 Feb 2019) Changed paths: M .circleci/config.yml Log Message: ----------- move run command ti proper section Commit: b66bf6a1046ca4b25ea56d73c8d76f7f5c7acda7 https://github.com/galaxyproject/galaxy/commit/b66bf6a1046ca4b25ea56d73c8d7… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M .circleci/config.yml Log Message: ----------- rmeov ethe restriction to single branch Commit: aa2142200ba0161ddea5640d3b2c2449da29de25 https://github.com/galaxyproject/galaxy/commit/aa2142200ba0161ddea5640d3b2c… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M .circleci/config.yml Log Message: ----------- just a commit Commit: 137cedd7e1392a6bbab83f5c3fe03ca1f89226b1 https://github.com/galaxyproject/galaxy/commit/137cedd7e1392a6bbab83f5c3fe0… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M .circleci/config.yml Log Message: ----------- Rename some keys Commit: e3a41af9e1d7d57208ac57a8908aa48b0c7f1991 https://github.com/galaxyproject/galaxy/commit/e3a41af9e1d7d57208ac57a8908a… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M .circleci/config.yml Log Message: ----------- Add restore_yarn_cache alias Commit: e6620cd4d9f9c0f356239c67c0d24d9914a8a4b7 https://github.com/galaxyproject/galaxy/commit/e6620cd4d9f9c0f356239c67c0d2… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M .circleci/config.yml Log Message: ----------- Add comment Commit: d04b32d0ac58b72f7a2db11c7b0689243eaf100c https://github.com/galaxyproject/galaxy/commit/d04b32d0ac58b72f7a2db11c7b06… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: A .circleci/config.yml Log Message: ----------- Merge pull request #7424 from martenson/circle-ci experiment - run all travis tests on circleci Compare: https://github.com/galaxyproject/galaxy/compare/cb7566ef02c4...d04b32d0ac58

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galaxy-commits March 2019