March 2019 - galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] 203937: send post data in payload per @mvdbeek suggestion
by Marius van den Beek 01 Mar '19

01 Mar '19

Branch: refs/heads/release_19.01 Home: https://github.com/galaxyproject/galaxy Commit: 2039376ddf21abb8e56b4ec984ea9d7fed46efb8 https://github.com/galaxyproject/galaxy/commit/2039376ddf21abb8e56b4ec984ea… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-02-28 (Thu, 28 Feb 2019) Changed paths: M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js Log Message: ----------- send post data in payload per @mvdbeek suggestion Commit: c40689dbd5fe27cace5c11a50d806445aefae97a https://github.com/galaxyproject/galaxy/commit/c40689dbd5fe27cace5c11a50d80… Author: Marius van den Beek <m.vandenbeek(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js Log Message: ----------- Merge pull request #7432 from martenson/fix-lib-paths [19.01] send post data in payload Compare: https://github.com/galaxyproject/galaxy/compare/64a0152a6b82...c40689dbd5fe

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[galaxyproject/galaxy] 9e0d3b: Fix workflow loading on systems with ASCII locale
by Nicola Soranzo 28 Feb '19

28 Feb '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 9e0d3b69cabe73a7b839e62723e73d52c2c41c69 https://github.com/galaxyproject/galaxy/commit/9e0d3b69cabe73a7b839e62723e7… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-02-27 (Wed, 27 Feb 2019) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Fix workflow loading on systems with ASCII locale Fixes https://github.com/galaxyproject/galaxy/issues/7421, though it's very likely Galaxy won't play well when python is falling back to ASCII as default encoding. WorkflowStep.label is backed by a 255 character unicode string, but tool_inputs is JSONType, which might have integer or float values (in principle), so we play it safe by casting to unicode. Commit: 13c175a8096b3d17b4002906cf8e13ab01865222 https://github.com/galaxyproject/galaxy/commit/13c175a8096b3d17b4002906cf8e… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-02-28 (Thu, 28 Feb 2019) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Merge pull request #7422 from mvdbeek/fix_workflow_loading [18.09] Fix workflow loading on systems with ASCII locale Commit: 9a26de1b4b5a96eacab97aca2e74b994f38bdc31 https://github.com/galaxyproject/galaxy/commit/9a26de1b4b5a96eacab97aca2e74… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2019-02-28 (Thu, 28 Feb 2019) Changed paths: M lib/galaxy/jobs/runners/slurm.py Log Message: ----------- Catch another Slurm memory cgroup creation error message Commit: 68e3568bb25928a86283e3d50411d64acd523c52 https://github.com/galaxyproject/galaxy/commit/68e3568bb25928a86283e3d50411… Author: Nicola Soranzo <nicola.soranzo(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M lib/galaxy/jobs/runners/slurm.py Log Message: ----------- Merge pull request #7429 from natefoo/slurm-cgroup-message-fix [18.09] Catch another Slurm memory cgroup creation error message Commit: 64a0152a6b82dd28c7fb5cb6a784e7eced988906 https://github.com/galaxyproject/galaxy/commit/64a0152a6b82dd28c7fb5cb6a784… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M lib/galaxy/jobs/runners/slurm.py M lib/galaxy/managers/workflows.py Log Message: ----------- Merge branch 'release_18.09' into release_19.01 Commit: c671b53727896c199227e33bed67d5a00c05cfd7 https://github.com/galaxyproject/galaxy/commit/c671b53727896c199227e33bed67… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M lib/galaxy/jobs/runners/slurm.py M lib/galaxy/managers/workflows.py Log Message: ----------- Merge branch 'release_19.01' into dev Compare: https://github.com/galaxyproject/galaxy/compare/ebec090e46c1...c671b5372789

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[galaxyproject/galaxy] 9e0d3b: Fix workflow loading on systems with ASCII locale
by Nicola Soranzo 28 Feb '19

28 Feb '19

Branch: refs/heads/release_19.01 Home: https://github.com/galaxyproject/galaxy Commit: 9e0d3b69cabe73a7b839e62723e73d52c2c41c69 https://github.com/galaxyproject/galaxy/commit/9e0d3b69cabe73a7b839e62723e7… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-02-27 (Wed, 27 Feb 2019) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Fix workflow loading on systems with ASCII locale Fixes https://github.com/galaxyproject/galaxy/issues/7421, though it's very likely Galaxy won't play well when python is falling back to ASCII as default encoding. WorkflowStep.label is backed by a 255 character unicode string, but tool_inputs is JSONType, which might have integer or float values (in principle), so we play it safe by casting to unicode. Commit: 13c175a8096b3d17b4002906cf8e13ab01865222 https://github.com/galaxyproject/galaxy/commit/13c175a8096b3d17b4002906cf8e… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-02-28 (Thu, 28 Feb 2019) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Merge pull request #7422 from mvdbeek/fix_workflow_loading [18.09] Fix workflow loading on systems with ASCII locale Commit: 9a26de1b4b5a96eacab97aca2e74b994f38bdc31 https://github.com/galaxyproject/galaxy/commit/9a26de1b4b5a96eacab97aca2e74… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2019-02-28 (Thu, 28 Feb 2019) Changed paths: M lib/galaxy/jobs/runners/slurm.py Log Message: ----------- Catch another Slurm memory cgroup creation error message Commit: 68e3568bb25928a86283e3d50411d64acd523c52 https://github.com/galaxyproject/galaxy/commit/68e3568bb25928a86283e3d50411… Author: Nicola Soranzo <nicola.soranzo(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M lib/galaxy/jobs/runners/slurm.py Log Message: ----------- Merge pull request #7429 from natefoo/slurm-cgroup-message-fix [18.09] Catch another Slurm memory cgroup creation error message Commit: 64a0152a6b82dd28c7fb5cb6a784e7eced988906 https://github.com/galaxyproject/galaxy/commit/64a0152a6b82dd28c7fb5cb6a784… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M lib/galaxy/jobs/runners/slurm.py M lib/galaxy/managers/workflows.py Log Message: ----------- Merge branch 'release_18.09' into release_19.01 Compare: https://github.com/galaxyproject/galaxy/compare/4dae35ea67be...64a0152a6b82

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[galaxyproject/galaxy] 9a26de: Catch another Slurm memory cgroup creation error m...
by Nicola Soranzo 28 Feb '19

28 Feb '19

Branch: refs/heads/release_18.09 Home: https://github.com/galaxyproject/galaxy Commit: 9a26de1b4b5a96eacab97aca2e74b994f38bdc31 https://github.com/galaxyproject/galaxy/commit/9a26de1b4b5a96eacab97aca2e74… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2019-02-28 (Thu, 28 Feb 2019) Changed paths: M lib/galaxy/jobs/runners/slurm.py Log Message: ----------- Catch another Slurm memory cgroup creation error message Commit: 68e3568bb25928a86283e3d50411d64acd523c52 https://github.com/galaxyproject/galaxy/commit/68e3568bb25928a86283e3d50411… Author: Nicola Soranzo <nicola.soranzo(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M lib/galaxy/jobs/runners/slurm.py Log Message: ----------- Merge pull request #7429 from natefoo/slurm-cgroup-message-fix [18.09] Catch another Slurm memory cgroup creation error message Compare: https://github.com/galaxyproject/galaxy/compare/13c175a8096b...68e3568bb259

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