- galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] 4c6fdf: Remove invalid user preferences beta (no longer a ...
by GitHub 08 Nov '17

08 Nov '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 4c6fdf660cb887ef3fae9e8582f791d0ded82326 https://github.com/galaxyproject/galaxy/commit/4c6fdf660cb887ef3fae9e8582f7… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-08 (Wed, 08 Nov 2017) Changed paths: M config/galaxy.ini.sample Log Message: ----------- Remove invalid user preferences beta (no longer a beta, always enabled) Commit: 03dccbae935da2d6a254a59a679ffff3357ec301 https://github.com/galaxyproject/galaxy/commit/03dccbae935da2d6a254a59a679f… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-08 (Wed, 08 Nov 2017) Changed paths: M config/galaxy.ini.sample Log Message: ----------- Remove no-longer-beta feature toggle for run_workflow_toolform_upgrade Commit: abd9dff404bd82f458f91e13b3f20111daf82914 https://github.com/galaxyproject/galaxy/commit/abd9dff404bd82f458f91e13b3f2… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-08 (Wed, 08 Nov 2017) Changed paths: M config/galaxy.ini.sample Log Message: ----------- Remove no-longer-valid feature toggle for enable_sequencer_communication Commit: a50d56e95221c44c47b33136042242a17a27a394 https://github.com/galaxyproject/galaxy/commit/a50d56e95221c44c47b331360422… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-08 (Wed, 08 Nov 2017) Changed paths: M config/galaxy.ini.sample Log Message: ----------- Various spelling issues in galaxy.ini.sample. Commit: 98d349332ffdc3a5ec07df2c08ffc5a0f5c972a8 https://github.com/galaxyproject/galaxy/commit/98d349332ffdc3a5ec07df2c08ff… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-08 (Wed, 08 Nov 2017) Changed paths: M test/unit/config/1607_root_filters/config/galaxy.ini M test/unit/config/1607_root_samples/config/galaxy.ini Log Message: ----------- Remove from unit test samples, as well. Commit: f50db592ccd055ad46fc2b163b2e8b181e79a914 https://github.com/galaxyproject/galaxy/commit/f50db592ccd055ad46fc2b163b2e… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-08 (Wed, 08 Nov 2017) Changed paths: M config/galaxy.ini.sample Log Message: ----------- Blank line Commit: 963cfd1a3faabc97c3fa4d916da3277938b68821 https://github.com/galaxyproject/galaxy/commit/963cfd1a3faabc97c3fa4d916da3… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-11-08 (Wed, 08 Nov 2017) Changed paths: M config/galaxy.ini.sample M test/unit/config/1607_root_filters/config/galaxy.ini M test/unit/config/1607_root_samples/config/galaxy.ini Log Message: ----------- Merge pull request #4957 from dannon/inisamplecleanup Remove invalid user preferences beta (no longer a beta, always enabled) Compare: https://github.com/galaxyproject/galaxy/compare/92c6f36e556f...963cfd1a3faa

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[galaxyproject/galaxy] bdc3a0: Fix visualization import link in success message
by GitHub 08 Nov '17

08 Nov '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: bdc3a0be5d1b4aeee3e6fb8437a0219c85515ba1 https://github.com/galaxyproject/galaxy/commit/bdc3a0be5d1b4aeee3e6fb8437a0… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-11-07 (Tue, 07 Nov 2017) Changed paths: M lib/galaxy/webapps/galaxy/controllers/visualization.py Log Message: ----------- Fix visualization import link in success message Commit: e5463eee8a0dfe7cfbee54d4a1aa7b6dd1e9eb80 https://github.com/galaxyproject/galaxy/commit/e5463eee8a0dfe7cfbee54d4a1aa… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-11-08 (Wed, 08 Nov 2017) Changed paths: M lib/galaxy/webapps/galaxy/controllers/visualization.py Log Message: ----------- Rewrite route without controller Commit: 92c6f36e556f60bb98ca0eea49b67bdd11f65179 https://github.com/galaxyproject/galaxy/commit/92c6f36e556f60bb98ca0eea49b6… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-08 (Wed, 08 Nov 2017) Changed paths: M lib/galaxy/webapps/galaxy/controllers/visualization.py Log Message: ----------- Merge pull request #4952 from guerler/fix_visualization_link Fix visualization link in import success message Compare: https://github.com/galaxyproject/galaxy/compare/3b4b97a2edd4...92c6f36e556f

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[galaxyproject/galaxy] f3e06c: iqtree and mldist datatypes
by GitHub 08 Nov '17

08 Nov '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: f3e06cce9aaa34233d406b17f38cab425a4e0099 https://github.com/galaxyproject/galaxy/commit/f3e06cce9aaa34233d406b17f38c… Author: Mehmet Tekman <m.tekman(a)ucl.ac.uk> Date: 2017-10-27 (Fri, 27 Oct 2017) Changed paths: M config/datatypes_conf.xml.sample M lib/galaxy/datatypes/data.py A lib/galaxy/datatypes/test/example.iqtree A lib/galaxy/datatypes/test/example.mldist Log Message: ----------- iqtree and mldist datatypes Commit: b8ce7b516f1a0d66c1ded78b0c93863ad801356c https://github.com/galaxyproject/galaxy/commit/b8ce7b516f1a0d66c1ded78b0c93… Author: Mehmet Tekman <m.tekman(a)ucl.ac.uk> Date: 2017-10-28 (Sat, 28 Oct 2017) Changed paths: M lib/galaxy/datatypes/data.py Log Message: ----------- added binary file checkers and line count limits Commit: f993aceee18a44c262d7b2d93345ced17b93cce6 https://github.com/galaxyproject/galaxy/commit/f993aceee18a44c262d7b2d93345… Author: Mehmet Tekman <m.tekman(a)ucl.ac.uk> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M .ci/flake8_lint_include_list.txt R .ci/flake8_py3_wrapper.sh M .ci/jenkins/selenium/Dockerfile M .ci/jenkins/selenium/docker-compose.yml M .ci/jenkins/selenium/galaxy.ini M .ci/jenkins/selenium/run_galaxy.bash M .ci/jenkins/selenium/run_tests.sh M .ci/py3_sources.txt M .gitignore M .travis.yml M CITATION M Makefile A client/.babelrc M client/GruntFile.js M client/README.md M client/bower.json M client/galaxy/scripts/admin.toolshed.js M client/galaxy/scripts/apps/admin.js M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/apps/login.js M client/galaxy/scripts/apps/panels/admin-panel.js M client/galaxy/scripts/apps/panels/history-panel.js M client/galaxy/scripts/apps/panels/tool-panel.js M client/galaxy/scripts/galaxy.interactive_environments.js M client/galaxy/scripts/galaxy.js M client/galaxy/scripts/galaxy.library.js M client/galaxy/scripts/galaxy.pages.js M client/galaxy/scripts/i18n.js M 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client/galaxy/scripts/mvc/history/hdca-model.js M client/galaxy/scripts/mvc/history/history-content-model.js M client/galaxy/scripts/mvc/history/history-contents.js M client/galaxy/scripts/mvc/history/history-list.js M client/galaxy/scripts/mvc/history/history-model.js M client/galaxy/scripts/mvc/history/history-preferences.js M client/galaxy/scripts/mvc/history/history-structure-view.js M client/galaxy/scripts/mvc/history/history-view-annotated.js M client/galaxy/scripts/mvc/history/history-view-edit-current.js M client/galaxy/scripts/mvc/history/history-view-edit.js M client/galaxy/scripts/mvc/history/history-view.js M client/galaxy/scripts/mvc/history/job-dag.js M client/galaxy/scripts/mvc/history/multi-panel.js M client/galaxy/scripts/mvc/history/options-menu.js M client/galaxy/scripts/mvc/job/job-li.js M client/galaxy/scripts/mvc/job/job-model.js M client/galaxy/scripts/mvc/job/job-params.js A client/galaxy/scripts/mvc/lazy/lazy-limited.js M 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templates/webapps/galaxy/visualization/create.mako A test-data/selenium-test-notebook.ipynb M test/api/test_api_batch.py M test/api/test_authenticate.py M test/api/test_dataset_collections.py M test/api/test_datatypes.py M test/api/test_histories.py M test/api/test_history_contents.py M test/api/test_jobs.py M test/api/test_pages.py M test/api/test_tools.py A test/api/test_tools_upload.py M test/api/test_users.py M test/api/test_visualizations.py M test/api/test_workflows.py M test/api/test_workflows_from_yaml.py M test/base/api.py M test/base/api_util.py A test/base/constants.py M test/base/driver_util.py M test/base/integration_util.py M test/base/populators.py M test/base/testcase.py M test/base/workflows_format_2/converter.py M test/base/workflows_format_2/main.py M test/docker/base/Dockerfile M test/docker/base/ansible_vars.yml M test/docker/base/run_test_wrapper.sh A test/docker/base/selenium/LICENSE A test/docker/base/selenium/README A test/docker/base/selenium/entry_point.sh A 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config/datatypes_conf.xml.sample M lib/galaxy/datatypes/data.py Log Message: ----------- vastly simplified iqtree datatypes Commit: 94a77f7524f72375bfef02e6e82f3a30e71924d9 https://github.com/galaxyproject/galaxy/commit/94a77f7524f72375bfef02e6e82f… Author: Mehmet Tekman <m.tekman(a)ucl.ac.uk> Date: 2017-11-03 (Fri, 03 Nov 2017) Changed paths: M config/datatypes_conf.xml.sample R lib/galaxy/datatypes/test/example.mldist Log Message: ----------- removed obsolete sniffer and test data Commit: 97fc49db0ce41b264308b0016f2b7f7633bc4a28 https://github.com/galaxyproject/galaxy/commit/97fc49db0ce41b264308b0016f2b… Author: Mehmet Tekman <m.tekman(a)ucl.ac.uk> Date: 2017-11-03 (Fri, 03 Nov 2017) Changed paths: M lib/galaxy/datatypes/data.py Log Message: ----------- removed unoverriden methods in subclass, empty lines Commit: 00ca4f3cdd1af1845ee3920452680ec2548f902f https://github.com/galaxyproject/galaxy/commit/00ca4f3cdd1af1845ee392045268… Author: Mehmet Tekman <m.tekman(a)ucl.ac.uk> Date: 2017-11-04 (Sat, 04 Nov 2017) Changed paths: M lib/galaxy/datatypes/data.py Log Message: ----------- quickfix to read Commit: d9607ce15659b4b26f377c37e7735c7ffa9ba52d https://github.com/galaxyproject/galaxy/commit/d9607ce15659b4b26f377c37e773… Author: Mehmet Tekman <m.tekman(a)ucl.ac.uk> Date: 2017-11-05 (Sun, 05 Nov 2017) Changed paths: M config/datatypes_conf.xml.sample M lib/galaxy/datatypes/data.py R lib/galaxy/datatypes/test/example.mldist Log Message: ----------- vastly simplified iqtree datatypes (squashed) Commit: 77c4ccc655690d4970abe5c0631c1d441d4fd46f https://github.com/galaxyproject/galaxy/commit/77c4ccc655690d4970abe5c0631c… Author: Mehmet Tekman <m.tekman(a)ucl.ac.uk> Date: 2017-11-06 (Mon, 06 Nov 2017) Log Message: ----------- Merge branch 'iqtree' of github.com:mtekman/galaxy into iqtree Commit: 5b594ae255b6615bb2d018c85e2e463c77f9cc46 https://github.com/galaxyproject/galaxy/commit/5b594ae255b6615bb2d018c85e2e… Author: Mehmet Tekman <m.tekman(a)ucl.ac.uk> Date: 2017-11-06 (Mon, 06 Nov 2017) Changed paths: M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/text.py Log Message: ----------- moved from data to text Commit: 4bca1a77cca41cb87b0fe2f758657af0e32a46ce https://github.com/galaxyproject/galaxy/commit/4bca1a77cca41cb87b0fe2f75865… Author: Mehmet Tekman <m.tekman(a)ucl.ac.uk> Date: 2017-11-06 (Mon, 06 Nov 2017) Changed paths: A .ci/jenkins/selenium-compose/Dockerfile A .ci/jenkins/selenium-compose/docker-compose.yml A .ci/jenkins/selenium-compose/galaxy.ini A .ci/jenkins/selenium-compose/run_galaxy.bash A .ci/jenkins/selenium-compose/run_tests.sh R .ci/jenkins/selenium/Dockerfile R .ci/jenkins/selenium/docker-compose.yml R .ci/jenkins/selenium/galaxy.ini R .ci/jenkins/selenium/run_galaxy.bash M .ci/jenkins/selenium/run_tests.sh M Makefile M client/.babelrc M client/galaxy/scripts/admin.toolshed.js M client/galaxy/scripts/apps/admin.js M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/apps/login.js M 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static/scripts/ui/loading-indicator.js M static/scripts/ui/mode-button.js M static/scripts/ui/pagination.js M static/scripts/ui/peek-column-selector.js M static/scripts/ui/popupmenu.js M static/scripts/ui/scroll-panel.js M static/scripts/ui/search-input.js M static/scripts/utils/add-logging.js M static/scripts/utils/ajax-queue.js M static/scripts/utils/async-save-text.js M static/scripts/utils/config.js M static/scripts/utils/deferred.js M static/scripts/utils/graph.js M static/scripts/utils/levenshtein.js M static/scripts/utils/localization.js M static/scripts/utils/metrics-logger.js M static/scripts/utils/natural-sort.js M static/scripts/utils/query-string-parsing.js M static/scripts/utils/uploadbox.js M static/scripts/utils/utils.js M static/scripts/viz/bbi-data-manager.js M static/scripts/viz/circster.js M static/scripts/viz/phyloviz.js M static/scripts/viz/sweepster.js M static/scripts/viz/trackster.js M static/scripts/viz/trackster/filters.js M static/scripts/viz/trackster/painters.js M static/scripts/viz/trackster/slotting.js M static/scripts/viz/trackster/tracks.js M static/scripts/viz/trackster/util.js M static/scripts/viz/visualization.js M static/scripts/viz/viz_views.js M templates/galaxy_client_app.mako M templates/grid_base.mako M templates/webapps/galaxy/dataset/display.mako M templates/webapps/galaxy/dataset/tabular_chunked.mako M templates/webapps/galaxy/galaxy.masthead.mako M templates/webapps/galaxy/galaxy.panels.mako M templates/webapps/galaxy/history/citations.mako M templates/webapps/galaxy/history/display.mako M templates/webapps/galaxy/history/display_structured.mako M templates/webapps/galaxy/history/embed.mako M templates/webapps/galaxy/history/structure.mako M templates/webapps/galaxy/history/view.mako M templates/webapps/galaxy/history/view_multiple.mako M templates/webapps/galaxy/page/editor.mako M templates/webapps/galaxy/visualization/display.mako M templates/webapps/galaxy/visualization/phyloviz.mako M templates/webapps/galaxy/visualization/sweepster.mako M templates/webapps/galaxy/workflow/editor.mako M templates/webapps/tool_shed/group/index.mako M test/api/test_dataset_collections.py M test/api/test_tools_upload.py M test/base/populators.py M test/galaxy_selenium/driver_factory.py M test/qunit/test-app.js M test/qunit/tests/form_tests.js M test/qunit/tests/galaxy-app-base.js M test/qunit/tests/graph.js M test/qunit/tests/hda-base.js M test/qunit/tests/history_contents_model_tests.js M test/qunit/tests/job-dag.js M test/qunit/tests/list-of-pairs-collection-creator.js M test/qunit/tests/masthead_tests.js M test/qunit/tests/metrics-logger.js M test/qunit/tests/modal_tests.js M test/qunit/tests/page_tests.js M test/qunit/tests/popover_tests.js M test/qunit/tests/ui_tests.js M test/qunit/tests/upload_dialog_tests.js M test/qunit/tests/utils_test.js M test/qunit/tests/workflow_editor_tests.js M test/selenium_tests/framework.py M test/selenium_tests/test_published_histories_grid.py Log Message: ----------- Merge branch 'dev' of github.com:galaxyproject/galaxy into iqtree Commit: e347aed810f5a67893d4d10b56973ca4a5912962 https://github.com/galaxyproject/galaxy/commit/e347aed810f5a67893d4d10b5697… Author: Mehmet Tekman <m.tekman(a)ucl.ac.uk> Date: 2017-11-07 (Tue, 07 Nov 2017) Changed paths: M config/datatypes_conf.xml.sample Log Message: ----------- fix to datatype and sniffer Commit: 3b4b97a2edd4e73d6861e9b749ff75f34014d13d https://github.com/galaxyproject/galaxy/commit/3b4b97a2edd4e73d6861e9b749ff… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-11-08 (Wed, 08 Nov 2017) Changed paths: M config/datatypes_conf.xml.sample A lib/galaxy/datatypes/test/example.iqtree M lib/galaxy/datatypes/text.py Log Message: ----------- Merge pull request #4849 from mtekman/iqtree Add IQtree datatypes Compare: https://github.com/galaxyproject/galaxy/compare/855ea1a6a248...3b4b97a2edd4

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[galaxyproject/galaxy] 2e9bf4: Fix multi operations if grid operations redirects ...
by GitHub 07 Nov '17

07 Nov '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 2e9bf4009591719f43da1f2408a2c090c4df5232 https://github.com/galaxyproject/galaxy/commit/2e9bf4009591719f43da1f2408a2… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-11-07 (Tue, 07 Nov 2017) Changed paths: M client/galaxy/scripts/mvc/grid/grid-view.js M static/maps/mvc/grid/grid-view.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/grid/grid-view.js Log Message: ----------- Fix multi operations if grid operations redirects into center panel Commit: 855ea1a6a24829b5461273ceb1d40450951e84fc https://github.com/galaxyproject/galaxy/commit/855ea1a6a24829b5461273ceb1d4… Author: Marius van den Beek <m.vandenbeek(a)gmail.com> Date: 2017-11-07 (Tue, 07 Nov 2017) Changed paths: M client/galaxy/scripts/mvc/grid/grid-view.js M static/maps/mvc/grid/grid-view.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/grid/grid-view.js Log Message: ----------- Merge pull request #4951 from guerler/fix_center_multi_operation Fix multiple selections for grid operations redirecting to center panel Compare: https://github.com/galaxyproject/galaxy/compare/74b37a9de905...855ea1a6a248

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[galaxyproject/infrastructure-playbook] c6fd1f: LDAP server role is working. Skipped auditlog/ldap...
by GitHub 06 Nov '17

06 Nov '17

Branch: refs/heads/galaxyenv Home: https://github.com/galaxyproject/infrastructure-playbook Commit: c6fd1ff76b85ec0b92d192fb50314e7158ca076a https://github.com/galaxyproject/infrastructure-playbook/commit/c6fd1ff76b8… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-11-06 (Mon, 06 Nov 2017) Changed paths: M env/galaxy/core.yml A env/galaxy/group_vars/ldapservers/vars.yml A env/galaxy/group_vars/ldapservers/vault.yml M env/galaxy/inventory A roles/ldap_server/defaults/main.yml A roles/ldap_server/files/autofs.ldif A roles/ldap_server/files/dhcp.ldif A roles/ldap_server/files/galaxy.ldif A roles/ldap_server/files/postfix.ldif A roles/ldap_server/files/rfc2307bis.ldif A roles/ldap_server/files/sudo.ldif A roles/ldap_server/handlers/main.yml A roles/ldap_server/meta/required_vars.yml A roles/ldap_server/tasks/debian.yml A roles/ldap_server/tasks/main.yml A roles/ldap_server/tasks/openldap.yml A roles/ldap_server/vars/debian.yml A roles/ldap_server/vars/openldap.yml Log Message: ----------- LDAP server role is working. Skipped auditlog/ldap2pts stuff as I plan to have Ansible create LDAP/AFS users

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[galaxyproject/galaxy] 89c838: Remove unused trackster styles.
by GitHub 06 Nov '17

06 Nov '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 89c83845a173906622bc6b5f0113c4e6bffe499a https://github.com/galaxyproject/galaxy/commit/89c83845a173906622bc6b5f0113… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-06 (Mon, 06 Nov 2017) Changed paths: M client/galaxy/style/less/trackster.less M static/style/blue/trackster.css Log Message: ----------- Remove unused trackster styles. Commit: e8c5ea7ad6781acc0729d3190c0978bf726d5062 https://github.com/galaxyproject/galaxy/commit/e8c5ea7ad6781acc0729d3190c09… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-06 (Mon, 06 Nov 2017) Changed paths: M client/galaxy/style/less/trackster.less Log Message: ----------- Leave trackster .icon styles in (but commented) since there exists some commented code that may need it as a reference. Commit: 9c47e957c337d21190b10781f2fdcd29cc41b1dc https://github.com/galaxyproject/galaxy/commit/9c47e957c337d21190b10781f2fd… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-06 (Mon, 06 Nov 2017) Changed paths: M client/galaxy/scripts/viz/circster.js M client/galaxy/scripts/viz/trackster.js M static/maps/viz/circster.js.map M static/maps/viz/trackster.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/viz/circster.js M static/scripts/viz/trackster.js Log Message: ----------- Bump cssloadfiles to when the views are actually created Commit: 74b37a9de905874da942aa91ca8b6e77dfa60fbf https://github.com/galaxyproject/galaxy/commit/74b37a9de905874da942aa91ca8b… Author: Aysam Guerler <aysam.guerler(a)gmail.com> Date: 2017-11-06 (Mon, 06 Nov 2017) Changed paths: M client/galaxy/scripts/viz/circster.js M client/galaxy/scripts/viz/trackster.js M client/galaxy/style/less/trackster.less M static/maps/viz/circster.js.map M static/maps/viz/trackster.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/viz/circster.js M static/scripts/viz/trackster.js M static/style/blue/trackster.css Log Message: ----------- Merge pull request #4948 from dannon/fix_trackster_styles Fix trackster styles bleeding into the app (the slightly offcenter upload .icon buttons) Compare: https://github.com/galaxyproject/galaxy/compare/83eefb6b0413...74b37a9de905

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[galaxyproject/galaxy] 8ef1e5: Remove `requirement` from shell_commands() paramet...
by GitHub 06 Nov '17

06 Nov '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 8ef1e51a4a06a74e2eaa9cd188a7f9194d345c27 https://github.com/galaxyproject/galaxy/commit/8ef1e51a4a06a74e2eaa9cd188a7… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2017-11-06 (Mon, 06 Nov 2017) Changed paths: M lib/galaxy/tools/deps/__init__.py M lib/galaxy/tools/deps/resolvers/__init__.py M lib/galaxy/tools/deps/resolvers/conda.py M lib/galaxy/tools/deps/resolvers/galaxy_packages.py M lib/galaxy/tools/deps/resolvers/lmod.py M lib/galaxy/tools/deps/resolvers/modules.py M lib/galaxy/tools/deps/resolvers/resolver_mixins.py M lib/galaxy/tools/deps/resolvers/tool_shed_packages.py M lib/galaxy/tools/deps/resolvers/unlinked_tool_shed_packages.py M test/unit/tools/test_conda_resolution.py M test/unit/tools/test_tool_deps.py Log Message: ----------- Remove `requirement` from shell_commands() parameters Commit: 11a9abbb2d7276208beed66bd153ba0fe7881d2b https://github.com/galaxyproject/galaxy/commit/11a9abbb2d7276208beed66bd153… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-11-06 (Mon, 06 Nov 2017) Changed paths: M lib/galaxy/tools/deps/__init__.py Log Message: ----------- Return an OrderedSet of dependencies instead of a list This avoids activating mulled dependencies multiple times and fixes https://github.com/galaxyproject/galaxy/issues/4821. We use OrderedSet because the order of activation may matter for toolshed dependencies. Commit: 83eefb6b0413b764ef86f755fee65f80d1988170 https://github.com/galaxyproject/galaxy/commit/83eefb6b0413b764ef86f755fee6… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-11-06 (Mon, 06 Nov 2017) Changed paths: M lib/galaxy/tools/deps/__init__.py M lib/galaxy/tools/deps/resolvers/__init__.py M lib/galaxy/tools/deps/resolvers/conda.py M lib/galaxy/tools/deps/resolvers/galaxy_packages.py M lib/galaxy/tools/deps/resolvers/lmod.py M lib/galaxy/tools/deps/resolvers/modules.py M lib/galaxy/tools/deps/resolvers/resolver_mixins.py M lib/galaxy/tools/deps/resolvers/tool_shed_packages.py M lib/galaxy/tools/deps/resolvers/unlinked_tool_shed_packages.py M test/unit/tools/test_conda_resolution.py M test/unit/tools/test_tool_deps.py Log Message: ----------- Merge pull request #4945 from nsoranzo/refactor_shell_commands Activate mulled dependencies once per job Compare: https://github.com/galaxyproject/galaxy/compare/363a2e063681...83eefb6b0413

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[galaxyproject/infrastructure-playbook] 372d7f: Don't send memory reports on saturdays
by GitHub 06 Nov '17

06 Nov '17

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 372d7f4a229681558656375313160a52eddb31b5 https://github.com/galaxyproject/infrastructure-playbook/commit/372d7f4a229… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-11-06 (Mon, 06 Nov 2017) Changed paths: M taccenv/host_vars/galaxy-db-02.tacc.utexas.edu/vars.yml Log Message: ----------- Don't send memory reports on saturdays

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[galaxyproject/infrastructure-playbook] 43cdd8: Move Main reports to galaxy-system mailing list
by GitHub 06 Nov '17

06 Nov '17

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 43cdd844a66081d84781dff54382d4b525a55e92 https://github.com/galaxyproject/infrastructure-playbook/commit/43cdd844a66… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-11-06 (Mon, 06 Nov 2017) Changed paths: M taccenv/group_vars/galaxyservers.yml M taccenv/host_vars/galaxy-db-02.tacc.utexas.edu/vars.yml Log Message: ----------- Move Main reports to galaxy-system mailing list

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[galaxyproject/galaxy] f927de: Add dataset collectino route without history id
by GitHub 06 Nov '17

06 Nov '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: f927ded864250f8f17846dde979263119e2eabb3 https://github.com/galaxyproject/galaxy/commit/f927ded864250f8f17846dde9792… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-11-06 (Mon, 06 Nov 2017) Changed paths: M lib/galaxy/webapps/galaxy/api/history_contents.py M lib/galaxy/webapps/galaxy/buildapp.py Log Message: ----------- Add dataset collectino route without history id Commit: 2faf8577abb1098a15c72a733626ffbf3d74a142 https://github.com/galaxyproject/galaxy/commit/2faf8577abb1098a15c72a733626… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-11-06 (Mon, 06 Nov 2017) Changed paths: M lib/galaxy/managers/collections.py Log Message: ----------- Use a collection's history if trans has no history Commit: 63a3fa483f6c46ef057ba0e3a91300e6c90d7419 https://github.com/galaxyproject/galaxy/commit/63a3fa483f6c46ef057ba0e3a913… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-11-06 (Mon, 06 Nov 2017) Changed paths: M client/galaxy/scripts/mvc/collection/collection-view.js M static/maps/mvc/collection/collection-view.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/collection/collection-view.js Log Message: ----------- Point download button for collections to api/dataset_collections Commit: 363a2e063681c288dd64bb62728263d736eced86 https://github.com/galaxyproject/galaxy/commit/363a2e063681c288dd64bb627282… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-06 (Mon, 06 Nov 2017) Changed paths: M client/galaxy/scripts/mvc/collection/collection-view.js M lib/galaxy/managers/collections.py M lib/galaxy/webapps/galaxy/api/history_contents.py M lib/galaxy/webapps/galaxy/buildapp.py M static/maps/mvc/collection/collection-view.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/collection/collection-view.js Log Message: ----------- Merge branch 'fix_download_button' into dev Compare: https://github.com/galaxyproject/galaxy/compare/c10da91220a1...363a2e063681

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[galaxyproject/galaxy] b8a33e: ES6 client/galaxy/scripts/utils/ajax-queue.js
by GitHub 06 Nov '17

06 Nov '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: b8a33ed500db7cfb5c6581304db2a721d93dda0b https://github.com/galaxyproject/galaxy/commit/b8a33ed500db7cfb5c6581304db2… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-11-05 (Sun, 05 Nov 2017) Changed paths: M client/galaxy/scripts/utils/ajax-queue.js M static/maps/utils/ajax-queue.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/utils/ajax-queue.js Log Message: ----------- ES6 client/galaxy/scripts/utils/ajax-queue.js - Use ``class``, ``super``, ``static``, and ``constructor`` to clean up object declaration. - Eliminate ``self``. Commit: c10da91220a1a66dbb8398168fc7d20110e60f6b https://github.com/galaxyproject/galaxy/commit/c10da91220a1a66dbb8398168fc7… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-06 (Mon, 06 Nov 2017) Changed paths: M client/galaxy/scripts/utils/ajax-queue.js M static/maps/utils/ajax-queue.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/utils/ajax-queue.js Log Message: ----------- Merge branch 'ajax-es6' into dev Compare: https://github.com/galaxyproject/galaxy/compare/ff5c55104211...c10da91220a1

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[galaxyproject/usegalaxy-playbook] 73c241: Update admin list.
by GitHub 06 Nov '17

06 Nov '17

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 73c2415d44bd85c2e2465ea4e2e1cacf4c153797 https://github.com/galaxyproject/usegalaxy-playbook/commit/73c2415d44bd85c2… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-10-30 (Mon, 30 Oct 2017) Changed paths: M env/main/group_vars/galaxyservers/vault.yml Log Message: ----------- Update admin list. Commit: 4ccc4bc252c11a9bd317ed2ed9d615772b797e58 https://github.com/galaxyproject/usegalaxy-playbook/commit/4ccc4bc252c11a9b… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-11-06 (Mon, 06 Nov 2017) Changed paths: M env/main/files/galaxy/var/integrated_tool_panel.xml M env/main/files/galaxy/var/shed_tool_conf.xml Log Message: ----------- Merge branch 'master' of github.com:/galaxyproject/usegalaxy-playbook Commit: 2f5de05fd06928fb462eb805a95bfa4e9200ea45 https://github.com/galaxyproject/usegalaxy-playbook/commit/2f5de05fd06928fb… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-11-06 (Mon, 06 Nov 2017) Changed paths: M env/test/templates/galaxy/config/job_conf.xml.j2 Log Message: ----------- Move ideas tool to the multi partition Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/5b1c5245baf7...…

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[galaxyproject/galaxy] a7b32a: Enable galaxy logging during Selenium tests.
by GitHub 06 Nov '17

06 Nov '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: a7b32a772d5c6b1d71fd947ef53789ce72b888de https://github.com/galaxyproject/galaxy/commit/a7b32a772d5c6b1d71fd947ef537… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-11-05 (Sun, 05 Nov 2017) Changed paths: M client/galaxy/scripts/galaxy.js M client/galaxy/scripts/utils/metrics-logger.js M test/galaxy_selenium/driver_factory.py M test/selenium_tests/framework.py Log Message: ----------- Enable galaxy logging during Selenium tests. - Use localStorage to enable the logs at the start of new connections during tests. - Add new flatten console logging options in the client to hack around problem recovering multiple argument style logging the client uses with only getting back first argument when using Selenium API (at least with Chrome). - Break out the browser log into a sort of default and verbose mode (only the latter includes DEBUG and INFO messages). - Use json.dump with the indent call to get more visually parsable logging messages in the Selenium test failure dump. Commit: e30df782e4b78f41686068986cc9e169b55c3469 https://github.com/galaxyproject/galaxy/commit/e30df782e4b78f41686068986cc9… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-11-05 (Sun, 05 Nov 2017) Changed paths: M static/maps/galaxy.js.map M static/maps/utils/metrics-logger.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/galaxy.js M static/scripts/utils/metrics-logger.js Log Message: ----------- Rebuild client. Commit: ff5c551042110bcf8645b62d654f3d2e08162c79 https://github.com/galaxyproject/galaxy/commit/ff5c551042110bcf8645b62d654f… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-06 (Mon, 06 Nov 2017) Changed paths: M client/galaxy/scripts/galaxy.js M client/galaxy/scripts/utils/metrics-logger.js M static/maps/galaxy.js.map M static/maps/utils/metrics-logger.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/galaxy.js M static/scripts/utils/metrics-logger.js M test/galaxy_selenium/driver_factory.py M test/selenium_tests/framework.py Log Message: ----------- Merge pull request #4935 from jmchilton/selenium_client_logging Enable Galaxy client logging during Selenium tests. Compare: https://github.com/galaxyproject/galaxy/compare/128b0a239be1...ff5c55104211

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[galaxyproject/galaxy] 611b66: Fix downloading of arbitrarily-nested collections
by GitHub 05 Nov '17

05 Nov '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 611b667aa97bd523fe0d4296b85c4a84c4dfa36f https://github.com/galaxyproject/galaxy/commit/611b667aa97bd523fe0d4296b85c… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-11-05 (Sun, 05 Nov 2017) Changed paths: M lib/galaxy/managers/collections_util.py M test/api/test_dataset_collections.py M test/base/populators.py Log Message: ----------- Fix downloading of arbitrarily-nested collections This should work for any level of nesting and includes tests for the list:list and list:list:list case. That's a first step towards https://github.com/galaxyproject/galaxy/issues/4415. Commit: 128b0a239be15d82fe8986e997c8af077db5a760 https://github.com/galaxyproject/galaxy/commit/128b0a239be15d82fe8986e997c8… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-11-05 (Sun, 05 Nov 2017) Changed paths: M lib/galaxy/managers/collections_util.py M test/api/test_dataset_collections.py M test/base/populators.py Log Message: ----------- Merge pull request #4934 from mvdbeek/download_list_list Fix downloading of arbitrarily-nested collections Compare: https://github.com/galaxyproject/galaxy/compare/ed0ac48985fa...128b0a239be1

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[galaxyproject/galaxy] c4a1ff: Lighter weight Selenium test setup for PRs.
by GitHub 04 Nov '17

04 Nov '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: c4a1ffa2daa56367cd6a99b60a621f03e061cfd8 https://github.com/galaxyproject/galaxy/commit/c4a1ffa2daa56367cd6a99b60a62… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-11-03 (Fri, 03 Nov 2017) Changed paths: A .ci/jenkins/selenium-compose/Dockerfile A .ci/jenkins/selenium-compose/docker-compose.yml A .ci/jenkins/selenium-compose/galaxy.ini A .ci/jenkins/selenium-compose/run_galaxy.bash A .ci/jenkins/selenium-compose/run_tests.sh R .ci/jenkins/selenium/Dockerfile R .ci/jenkins/selenium/docker-compose.yml R .ci/jenkins/selenium/galaxy.ini R .ci/jenkins/selenium/run_galaxy.bash M .ci/jenkins/selenium/run_tests.sh M run_tests.sh Log Message: ----------- Lighter weight Selenium test setup for PRs. The Dockerfile and image update in #4900 baked chrome, chrome-wrapper, xvfb, and a Selenium server into the default Galaxy testing image. This means we should no longer need to run three docker containers in a compose setup to run Selenium tests. This swaps the script target used by Jenkins to use this newer variant of the tests. In addition to simply consuming less CPU and booting up much faster thanks to pre-installed dependencies and pre-migrated database, this setup is much easier to cleanup and so we don't need to restrict it to one test per host - these tests I think should run just like API and framework tests. This should also be easier for people running tests locally. I've kept the old compose setup around and I'll setup a Jenkins job against dev that continues to run it periodically (just not on PRs). It does testing of proxy prefix things this variant doesn't and serves as a good reference implementation for multi-container Galaxy testing - which we may wish to do for various categories of tests in the future. The multi-container variant makes it much easier to bring in various services - lots of which one can imagine writing useful Galaxy tests for - AMQP, statistics collection, Docker itself, etc.... Commit: 3a1ca26339b928c362d9f7b9f0db9cecca364c77 https://github.com/galaxyproject/galaxy/commit/3a1ca26339b928c362d9f7b9f0db… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-11-03 (Fri, 03 Nov 2017) Changed paths: M test/selenium_tests/test_published_histories_grid.py Log Message: ----------- Fix published histories grid test. Commit: ed0ac48985fa061a3a103fb819990fc50a0831d4 https://github.com/galaxyproject/galaxy/commit/ed0ac48985fa061a3a103fb81999… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-04 (Sat, 04 Nov 2017) Changed paths: A .ci/jenkins/selenium-compose/Dockerfile A .ci/jenkins/selenium-compose/docker-compose.yml A .ci/jenkins/selenium-compose/galaxy.ini A .ci/jenkins/selenium-compose/run_galaxy.bash A .ci/jenkins/selenium-compose/run_tests.sh R .ci/jenkins/selenium/Dockerfile R .ci/jenkins/selenium/docker-compose.yml R .ci/jenkins/selenium/galaxy.ini R .ci/jenkins/selenium/run_galaxy.bash M .ci/jenkins/selenium/run_tests.sh M run_tests.sh M test/selenium_tests/test_published_histories_grid.py Log Message: ----------- Merge pull request #4925 from jmchilton/selenium_lite__fewer_calories_same_great_taste Lighter weight Selenium test setup for PRs. Compare: https://github.com/galaxyproject/galaxy/compare/e4b2049a37d6...ed0ac48985fa

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[galaxyproject/galaxy] 005f9d: Improve error handling for incorrect datatype uplo...
by GitHub 03 Nov '17

03 Nov '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 005f9d70f3ae2b15c8f0a3d107b5deaaeba9c3ec https://github.com/galaxyproject/galaxy/commit/005f9d70f3ae2b15c8f0a3d107b5… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M lib/galaxy/tools/parameters/grouping.py M test/api/test_tools_upload.py Log Message: ----------- Improve error handling for incorrect datatype upload. Commit: e4b2049a37d66b1eec035e3e8227a5e74bce1b9d https://github.com/galaxyproject/galaxy/commit/e4b2049a37d66b1eec035e3e8227… Author: Björn Grüning <bjoern(a)gruenings.eu> Date: 2017-11-03 (Fri, 03 Nov 2017) Changed paths: M lib/galaxy/tools/parameters/grouping.py M test/api/test_tools_upload.py Log Message: ----------- Merge pull request #4922 from jmchilton/file_count_fallback Improve error handling for incorrect datatype upload. Compare: https://github.com/galaxyproject/galaxy/compare/7196059afdcc...e4b2049a37d6

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[galaxyproject/galaxy] e3be7c: fix broken link in 17.09 announcement
by GitHub 03 Nov '17

03 Nov '17

Branch: refs/heads/release_17.09 Home: https://github.com/galaxyproject/galaxy Commit: e3be7c31d59b69571bcee04599bdac6693426b89 https://github.com/galaxyproject/galaxy/commit/e3be7c31d59b69571bcee04599bd… Author: Wolfgang Maier <wolfgang.maier(a)biologie.uni-freiburg.de> Date: 2017-11-03 (Fri, 03 Nov 2017) Changed paths: M doc/source/releases/17.09_announce.rst Log Message: ----------- fix broken link in 17.09 announcement Commit: 222ece4eabb6d080c6b8a0e327f8cf617b8a194f https://github.com/galaxyproject/galaxy/commit/222ece4eabb6d080c6b8a0e327f8… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-11-03 (Fri, 03 Nov 2017) Changed paths: M doc/source/releases/17.09_announce.rst Log Message: ----------- Merge pull request #4927 from wm75/patch-2 fix broken link in 17.09 announcement Compare: https://github.com/galaxyproject/galaxy/compare/19e5478cb8ff...222ece4eabb6

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[galaxyproject/infrastructure-playbook] 6057f5: Serve gxy.io from athena
by GitHub 03 Nov '17

03 Nov '17

Branch: refs/heads/galaxyenv Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 6057f59d8dd1f8d9716f1493a33c8db8713d1327 https://github.com/galaxyproject/infrastructure-playbook/commit/6057f59d8dd… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-11-03 (Fri, 03 Nov 2017) Changed paths: M galaxyenv/host_vars/athena.galaxyproject.org.yml A galaxyenv/templates/nginx/gxy.io.j2 Log Message: ----------- Serve gxy.io from athena Commit: a5058f56e16ac985f2a643dec756e5b56d569feb https://github.com/galaxyproject/infrastructure-playbook/commit/a5058f56e16… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-11-03 (Fri, 03 Nov 2017) Changed paths: M env/galaxy/host_vars/athena.galaxyproject.org/vars.yml A env/galaxy/templates/nginx/gxy.io.j2 Log Message: ----------- Merge branch 'master' into galaxyenv Compare: https://github.com/galaxyproject/infrastructure-playbook/compare/1520279873…

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[galaxyproject/infrastructure-playbook] 1a8ffc: Update common_roles for ordered filter
by GitHub 03 Nov '17

03 Nov '17

Branch: refs/heads/galaxyenv Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 1a8ffca684f616e0c76427c50e45bd6e56d2b7a7 https://github.com/galaxyproject/infrastructure-playbook/commit/1a8ffca684f… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-11-03 (Fri, 03 Nov 2017) Changed paths: M common_roles Log Message: ----------- Update common_roles for ordered filter Commit: 1520279873385c678558415bc330a2bb41bdb378 https://github.com/galaxyproject/infrastructure-playbook/commit/15202798733… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-11-03 (Fri, 03 Nov 2017) Changed paths: M env/galaxy/core.yml A env/galaxy/group_vars/dnsservers.yml M env/galaxy/inventory A roles/dns/handlers/main.yml M roles/dns/tasks/main.yml M roles/dns/templates/named_options.conf.j2 M roles/dns/templates/named_views.conf.j2 M roles/dns/vars/bind.yml M roles/dns/vars/debian.yml Log Message: ----------- dns role is working Compare: https://github.com/galaxyproject/infrastructure-playbook/compare/11a090947a…

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[galaxyproject/infrastructure-playbook] 6057f5: Serve gxy.io from athena
by GitHub 03 Nov '17

03 Nov '17

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 6057f59d8dd1f8d9716f1493a33c8db8713d1327 https://github.com/galaxyproject/infrastructure-playbook/commit/6057f59d8dd… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-11-03 (Fri, 03 Nov 2017) Changed paths: M galaxyenv/host_vars/athena.galaxyproject.org.yml A galaxyenv/templates/nginx/gxy.io.j2 Log Message: ----------- Serve gxy.io from athena

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[galaxyproject/galaxy] b5d045: Commonjs import conversion.
by GitHub 03 Nov '17

03 Nov '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: b5d045571570a2d47b694b390cb8c535f5ec62c0 https://github.com/galaxyproject/galaxy/commit/b5d045571570a2d47b694b390cb8… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-18 (Wed, 18 Oct 2017) Changed paths: M client/galaxy/scripts/apps/admin.js M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/apps/login.js M client/galaxy/scripts/apps/panels/admin-panel.js M client/galaxy/scripts/apps/panels/history-panel.js M client/galaxy/scripts/apps/panels/tool-panel.js M client/galaxy/scripts/layout/router.js M client/galaxy/scripts/onload.js M static/maps/layout/router.js.map M static/maps/onload.js.map M static/scripts/bundled/admin.bundled.js M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/layout/router.js M static/scripts/onload.js Log Message: ----------- Commonjs import conversion. Commit: 99b4d1abbc8ac69e076249730a946565ce171b78 https://github.com/galaxyproject/galaxy/commit/99b4d1abbc8ac69e076249730a94… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-18 (Wed, 18 Oct 2017) Changed paths: M client/galaxy/scripts/apps/admin.js M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/apps/login.js M client/galaxy/scripts/apps/panels/history-panel.js M client/galaxy/scripts/mvc/dataset/data.js M client/galaxy/scripts/mvc/dataset/dataset-choice.js M client/galaxy/scripts/mvc/dataset/dataset-edit-attributes.js M client/galaxy/scripts/mvc/dataset/dataset-error.js M client/galaxy/scripts/mvc/dataset/dataset-li-edit.js M client/galaxy/scripts/mvc/dataset/dataset-li.js M client/galaxy/scripts/mvc/dataset/dataset-list.js M client/galaxy/scripts/mvc/dataset/dataset-model.js M client/galaxy/scripts/mvc/dataset/states.js M static/maps/mvc/dataset/data.js.map M static/maps/mvc/dataset/dataset-choice.js.map M static/maps/mvc/dataset/dataset-edit-attributes.js.map M static/maps/mvc/dataset/dataset-error.js.map M static/maps/mvc/dataset/dataset-li-edit.js.map M static/maps/mvc/dataset/dataset-li.js.map M static/maps/mvc/dataset/dataset-list.js.map M static/maps/mvc/dataset/dataset-model.js.map M static/maps/mvc/dataset/states.js.map M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/dataset/data.js M static/scripts/mvc/dataset/dataset-choice.js M static/scripts/mvc/dataset/dataset-edit-attributes.js M static/scripts/mvc/dataset/dataset-error.js M static/scripts/mvc/dataset/dataset-li-edit.js M static/scripts/mvc/dataset/dataset-li.js M static/scripts/mvc/dataset/dataset-list.js M static/scripts/mvc/dataset/dataset-model.js M static/scripts/mvc/dataset/states.js Log Message: ----------- Incremental import conversion. Commit: 831b24e591aad042b1cb6d435fd3090cc7cb0193 https://github.com/galaxyproject/galaxy/commit/831b24e591aad042b1cb6d435fd3… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-18 (Wed, 18 Oct 2017) Changed paths: M client/galaxy/scripts/mvc/collection/base-creator.js M client/galaxy/scripts/mvc/collection/collection-li-edit.js M client/galaxy/scripts/mvc/collection/collection-li.js M client/galaxy/scripts/mvc/collection/collection-model.js M client/galaxy/scripts/mvc/collection/collection-view-edit.js M client/galaxy/scripts/mvc/collection/collection-view.js M client/galaxy/scripts/mvc/collection/list-collection-creator.js M client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js M client/galaxy/scripts/mvc/collection/pair-collection-creator.js M static/maps/mvc/collection/base-creator.js.map M static/maps/mvc/collection/collection-li-edit.js.map M static/maps/mvc/collection/collection-li.js.map M static/maps/mvc/collection/collection-model.js.map M static/maps/mvc/collection/collection-view-edit.js.map M static/maps/mvc/collection/collection-view.js.map M static/maps/mvc/collection/list-collection-creator.js.map M static/maps/mvc/collection/list-of-pairs-collection-creator.js.map M static/maps/mvc/collection/pair-collection-creator.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/collection/base-creator.js M static/scripts/mvc/collection/collection-li-edit.js M static/scripts/mvc/collection/collection-li.js M static/scripts/mvc/collection/collection-model.js M static/scripts/mvc/collection/collection-view-edit.js M static/scripts/mvc/collection/collection-view.js M static/scripts/mvc/collection/list-collection-creator.js M static/scripts/mvc/collection/list-of-pairs-collection-creator.js M static/scripts/mvc/collection/pair-collection-creator.js Log Message: ----------- Collections imports->es6 Commit: 7cf21ecb20efaec34f006e5d4717787ab63d0266 https://github.com/galaxyproject/galaxy/commit/7cf21ecb20efaec34f006e5d4717… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-18 (Wed, 18 Oct 2017) Changed paths: M client/galaxy/scripts/mvc/history/copy-dialog.js M client/galaxy/scripts/mvc/history/hda-li-edit.js M client/galaxy/scripts/mvc/history/hda-li.js M client/galaxy/scripts/mvc/history/hda-model.js M client/galaxy/scripts/mvc/history/hdca-li-edit.js M client/galaxy/scripts/mvc/history/hdca-li.js M client/galaxy/scripts/mvc/history/hdca-model.js M client/galaxy/scripts/mvc/history/history-content-model.js M client/galaxy/scripts/mvc/history/history-contents.js M client/galaxy/scripts/mvc/history/history-list.js M client/galaxy/scripts/mvc/history/history-model.js M client/galaxy/scripts/mvc/history/history-preferences.js M client/galaxy/scripts/mvc/history/history-structure-view.js M client/galaxy/scripts/mvc/history/history-view-annotated.js M client/galaxy/scripts/mvc/history/history-view-edit-current.js M client/galaxy/scripts/mvc/history/history-view-edit.js M client/galaxy/scripts/mvc/history/history-view.js M client/galaxy/scripts/mvc/history/job-dag.js M client/galaxy/scripts/mvc/history/multi-panel.js M client/galaxy/scripts/mvc/history/options-menu.js M static/maps/mvc/history/copy-dialog.js.map M static/maps/mvc/history/hda-li-edit.js.map M static/maps/mvc/history/hda-li.js.map M static/maps/mvc/history/hda-model.js.map M static/maps/mvc/history/hdca-li-edit.js.map M static/maps/mvc/history/hdca-li.js.map M static/maps/mvc/history/hdca-model.js.map M static/maps/mvc/history/history-content-model.js.map M static/maps/mvc/history/history-contents.js.map M static/maps/mvc/history/history-list.js.map M static/maps/mvc/history/history-model.js.map M static/maps/mvc/history/history-preferences.js.map M static/maps/mvc/history/history-structure-view.js.map M static/maps/mvc/history/history-view-annotated.js.map M static/maps/mvc/history/history-view-edit-current.js.map M static/maps/mvc/history/history-view-edit.js.map M static/maps/mvc/history/history-view.js.map M static/maps/mvc/history/job-dag.js.map M static/maps/mvc/history/multi-panel.js.map M static/maps/mvc/history/options-menu.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/history/copy-dialog.js M static/scripts/mvc/history/hda-li-edit.js M static/scripts/mvc/history/hda-li.js M static/scripts/mvc/history/hda-model.js M static/scripts/mvc/history/hdca-li-edit.js M static/scripts/mvc/history/hdca-li.js M static/scripts/mvc/history/hdca-model.js M static/scripts/mvc/history/history-content-model.js M static/scripts/mvc/history/history-contents.js M static/scripts/mvc/history/history-list.js M static/scripts/mvc/history/history-model.js M static/scripts/mvc/history/history-preferences.js M static/scripts/mvc/history/history-structure-view.js M static/scripts/mvc/history/history-view-annotated.js M static/scripts/mvc/history/history-view-edit-current.js M static/scripts/mvc/history/history-view-edit.js M static/scripts/mvc/history/history-view.js M static/scripts/mvc/history/job-dag.js M static/scripts/mvc/history/multi-panel.js M static/scripts/mvc/history/options-menu.js Log Message: ----------- Convert mvc/history imports Commit: 0af5669209da2d1d1bc6eae23bfa226b7b7e99ba https://github.com/galaxyproject/galaxy/commit/0af5669209da2d1d1bc6eae23bfa… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-18 (Wed, 18 Oct 2017) Changed paths: M client/galaxy/scripts/mvc/base/controlled-fetch-collection.js M client/galaxy/scripts/mvc/list/list-item.js M client/galaxy/scripts/mvc/list/list-view.js M static/maps/mvc/base/controlled-fetch-collection.js.map M static/maps/mvc/list/list-item.js.map M static/maps/mvc/list/list-view.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/base/controlled-fetch-collection.js M static/scripts/mvc/list/list-item.js M static/scripts/mvc/list/list-view.js Log Message: ----------- More imports, mvc/list and mvc/base Commit: 1079db30ec50639bfde390d952ccbc96187c2ac6 https://github.com/galaxyproject/galaxy/commit/1079db30ec50639bfde390d952cc… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-18 (Wed, 18 Oct 2017) Changed paths: M client/galaxy/scripts/mvc/form/form-data.js M client/galaxy/scripts/mvc/form/form-input.js M client/galaxy/scripts/mvc/form/form-parameters.js M client/galaxy/scripts/mvc/form/form-repeat.js M client/galaxy/scripts/mvc/form/form-section.js M client/galaxy/scripts/mvc/form/form-view.js M client/galaxy/scripts/mvc/form/form-wrapper.js M client/galaxy/scripts/mvc/grid/grid-model.js M client/galaxy/scripts/mvc/grid/grid-shared.js M client/galaxy/scripts/mvc/grid/grid-template.js M client/galaxy/scripts/mvc/grid/grid-view.js M static/maps/mvc/form/form-data.js.map M static/maps/mvc/form/form-input.js.map M static/maps/mvc/form/form-parameters.js.map M static/maps/mvc/form/form-repeat.js.map M static/maps/mvc/form/form-section.js.map M static/maps/mvc/form/form-view.js.map M static/maps/mvc/form/form-wrapper.js.map M static/maps/mvc/grid/grid-model.js.map M static/maps/mvc/grid/grid-shared.js.map M static/maps/mvc/grid/grid-template.js.map M static/maps/mvc/grid/grid-view.js.map M static/scripts/bundled/admin.bundled.js M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/form/form-data.js M static/scripts/mvc/form/form-input.js M static/scripts/mvc/form/form-parameters.js M static/scripts/mvc/form/form-repeat.js M static/scripts/mvc/form/form-section.js M static/scripts/mvc/form/form-view.js M static/scripts/mvc/form/form-wrapper.js M static/scripts/mvc/grid/grid-model.js M static/scripts/mvc/grid/grid-shared.js M static/scripts/mvc/grid/grid-template.js M static/scripts/mvc/grid/grid-view.js Log Message: ----------- mvc/form and grid imports Commit: 60b4056aef8740b49ce336585edfd7d1821cf70c https://github.com/galaxyproject/galaxy/commit/60b4056aef8740b49ce336585edf… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-18 (Wed, 18 Oct 2017) Changed paths: M client/galaxy/scripts/mvc/job/job-li.js M client/galaxy/scripts/mvc/job/job-model.js M client/galaxy/scripts/mvc/job/job-params.js M client/galaxy/scripts/mvc/lazy/lazy-limited.js M client/galaxy/scripts/mvc/tool/tool-form-base.js M client/galaxy/scripts/mvc/tool/tool-form-composite.js M client/galaxy/scripts/mvc/tool/tool-form.js M client/galaxy/scripts/mvc/tool/tool-genomespace.js M client/galaxy/scripts/mvc/tool/tools.js M static/maps/mvc/job/job-li.js.map M static/maps/mvc/job/job-model.js.map M static/maps/mvc/job/job-params.js.map M static/maps/mvc/lazy/lazy-limited.js.map M static/maps/mvc/tool/tool-form-base.js.map M static/maps/mvc/tool/tool-form-composite.js.map M static/maps/mvc/tool/tool-form.js.map M static/maps/mvc/tool/tool-genomespace.js.map M static/maps/mvc/tool/tools.js.map M static/scripts/bundled/admin.bundled.js M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/job/job-li.js M static/scripts/mvc/job/job-model.js M static/scripts/mvc/job/job-params.js M static/scripts/mvc/lazy/lazy-limited.js M static/scripts/mvc/tool/tool-form-base.js M static/scripts/mvc/tool/tool-form-composite.js M static/scripts/mvc/tool/tool-form.js M static/scripts/mvc/tool/tool-genomespace.js M static/scripts/mvc/tool/tools.js Log Message: ----------- mvc/job, lazy, tool es6 imports Commit: 94892528398955309c05d9942f4643560ee86373 https://github.com/galaxyproject/galaxy/commit/94892528398955309c05d9942f46… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-19 (Thu, 19 Oct 2017) Changed paths: M client/galaxy/scripts/mvc/upload/collection/collection-row.js M client/galaxy/scripts/mvc/upload/collection/collection-view.js M client/galaxy/scripts/mvc/upload/composite/composite-row.js M client/galaxy/scripts/mvc/upload/composite/composite-view.js M client/galaxy/scripts/mvc/upload/default/default-row.js M client/galaxy/scripts/mvc/upload/default/default-view.js M client/galaxy/scripts/mvc/upload/upload-button.js M client/galaxy/scripts/mvc/upload/upload-extension.js M client/galaxy/scripts/mvc/upload/upload-ftp.js M client/galaxy/scripts/mvc/upload/upload-model.js M client/galaxy/scripts/mvc/upload/upload-settings.js M client/galaxy/scripts/mvc/upload/upload-view.js M client/galaxy/scripts/mvc/user/user-custom-builds.js M client/galaxy/scripts/mvc/user/user-model.js M client/galaxy/scripts/mvc/user/user-preferences.js M client/galaxy/scripts/mvc/user/user-quotameter.js M static/maps/mvc/upload/collection/collection-row.js.map M static/maps/mvc/upload/collection/collection-view.js.map M static/maps/mvc/upload/composite/composite-row.js.map M static/maps/mvc/upload/composite/composite-view.js.map M static/maps/mvc/upload/default/default-row.js.map M static/maps/mvc/upload/default/default-view.js.map M static/maps/mvc/upload/upload-button.js.map M static/maps/mvc/upload/upload-extension.js.map M static/maps/mvc/upload/upload-ftp.js.map M static/maps/mvc/upload/upload-model.js.map M static/maps/mvc/upload/upload-settings.js.map M static/maps/mvc/upload/upload-view.js.map M static/maps/mvc/user/user-custom-builds.js.map M static/maps/mvc/user/user-model.js.map M static/maps/mvc/user/user-preferences.js.map M static/maps/mvc/user/user-quotameter.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/upload/collection/collection-row.js M static/scripts/mvc/upload/collection/collection-view.js M static/scripts/mvc/upload/composite/composite-row.js M static/scripts/mvc/upload/composite/composite-view.js M static/scripts/mvc/upload/default/default-row.js M static/scripts/mvc/upload/default/default-view.js M static/scripts/mvc/upload/upload-button.js M static/scripts/mvc/upload/upload-extension.js M static/scripts/mvc/upload/upload-ftp.js M static/scripts/mvc/upload/upload-model.js M static/scripts/mvc/upload/upload-settings.js M static/scripts/mvc/upload/upload-view.js M static/scripts/mvc/user/user-custom-builds.js M static/scripts/mvc/user/user-model.js M static/scripts/mvc/user/user-preferences.js M static/scripts/mvc/user/user-quotameter.js Log Message: ----------- mvc/upload, user es6 imports Commit: e602114987ead2f1734bff76a444ea9ffc0037ed https://github.com/galaxyproject/galaxy/commit/e602114987ead2f1734bff76a444… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-19 (Thu, 19 Oct 2017) Changed paths: M client/galaxy/scripts/mvc/annotation.js M client/galaxy/scripts/mvc/base-mvc.js M client/galaxy/scripts/mvc/tag.js M client/galaxy/scripts/mvc/tours.js M client/galaxy/scripts/mvc/webhooks.js M static/maps/mvc/annotation.js.map M static/maps/mvc/base-mvc.js.map M static/maps/mvc/tag.js.map M static/maps/mvc/tours.js.map M static/maps/mvc/webhooks.js.map M static/scripts/bundled/admin.bundled.js M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/annotation.js M static/scripts/mvc/base-mvc.js M static/scripts/mvc/tag.js M static/scripts/mvc/tours.js M static/scripts/mvc/webhooks.js Log Message: ----------- Individual mvc/* module conversions. Commit: ca4f8b7117169d4b00e72ab28a60d1a0954a85af https://github.com/galaxyproject/galaxy/commit/ca4f8b7117169d4b00e72ab28a60… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-23 (Mon, 23 Oct 2017) Changed paths: M client/galaxy/scripts/mvc/webhooks.js M static/maps/mvc/webhooks.js.map M static/scripts/bundled/admin.bundled.js M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/webhooks.js Log Message: ----------- Bad conversion smashed webhooks; restore and fix. Commit: 4e8455fb554fba33f5bca8549a75cb77627c37cb https://github.com/galaxyproject/galaxy/commit/4e8455fb554fba33f5bca8549a75… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-23 (Mon, 23 Oct 2017) Changed paths: M client/gulpfile.js Log Message: ----------- Add gulp-specific amd transform Commit: 363c64043e2915a247c4ac8aa12ea7c80c074e6b https://github.com/galaxyproject/galaxy/commit/363c64043e2915a247c4ac8aa12e… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-23 (Mon, 23 Oct 2017) Changed paths: M client/galaxy/scripts/onload.js M static/maps/admin.toolshed.js.map M static/maps/galaxy.interactive_environments.js.map M static/maps/galaxy.js.map M static/maps/galaxy.library.js.map M static/maps/galaxy.pages.js.map M static/maps/i18n.js.map M static/maps/layout/generic-nav-view.js.map M static/maps/layout/masthead.js.map M static/maps/layout/menu.js.map M static/maps/layout/modal.js.map M static/maps/layout/page.js.map M static/maps/layout/panel.js.map M static/maps/layout/router.js.map M static/maps/layout/scratchbook.js.map M static/maps/mvc/annotation.js.map M static/maps/mvc/base-mvc.js.map M static/maps/mvc/base/controlled-fetch-collection.js.map M static/maps/mvc/citation/citation-model.js.map M static/maps/mvc/citation/citation-view.js.map M static/maps/mvc/collection/base-creator.js.map M static/maps/mvc/collection/collection-li-edit.js.map M static/maps/mvc/collection/collection-li.js.map M static/maps/mvc/collection/collection-model.js.map M static/maps/mvc/collection/collection-view-edit.js.map M static/maps/mvc/collection/collection-view.js.map M static/maps/mvc/collection/list-collection-creator.js.map M static/maps/mvc/collection/list-of-pairs-collection-creator.js.map M static/maps/mvc/collection/pair-collection-creator.js.map M static/maps/mvc/dataset/data.js.map M static/maps/mvc/dataset/dataset-choice.js.map M static/maps/mvc/dataset/dataset-edit-attributes.js.map M static/maps/mvc/dataset/dataset-error.js.map M static/maps/mvc/dataset/dataset-li-edit.js.map M static/maps/mvc/dataset/dataset-li.js.map M static/maps/mvc/dataset/dataset-list.js.map M static/maps/mvc/dataset/dataset-model.js.map M static/maps/mvc/dataset/states.js.map M static/maps/mvc/form/form-data.js.map M static/maps/mvc/form/form-input.js.map M static/maps/mvc/form/form-parameters.js.map M static/maps/mvc/form/form-repeat.js.map M static/maps/mvc/form/form-section.js.map M static/maps/mvc/form/form-view.js.map M static/maps/mvc/form/form-wrapper.js.map M static/maps/mvc/grid/grid-model.js.map M static/maps/mvc/grid/grid-shared.js.map M static/maps/mvc/grid/grid-template.js.map M static/maps/mvc/grid/grid-view.js.map M static/maps/mvc/history/copy-dialog.js.map M static/maps/mvc/history/hda-li-edit.js.map M static/maps/mvc/history/hda-li.js.map M static/maps/mvc/history/hda-model.js.map M static/maps/mvc/history/hdca-li-edit.js.map M static/maps/mvc/history/hdca-li.js.map M static/maps/mvc/history/hdca-model.js.map M static/maps/mvc/history/history-content-model.js.map M static/maps/mvc/history/history-contents.js.map M static/maps/mvc/history/history-list.js.map M static/maps/mvc/history/history-model.js.map M static/maps/mvc/history/history-preferences.js.map M static/maps/mvc/history/history-structure-view.js.map M static/maps/mvc/history/history-view-annotated.js.map M static/maps/mvc/history/history-view-edit-current.js.map M static/maps/mvc/history/history-view-edit.js.map M static/maps/mvc/history/history-view.js.map M static/maps/mvc/history/job-dag.js.map M static/maps/mvc/history/multi-panel.js.map M static/maps/mvc/history/options-menu.js.map M static/maps/mvc/job/job-li.js.map M static/maps/mvc/job/job-model.js.map M static/maps/mvc/job/job-params.js.map M static/maps/mvc/lazy/lazy-limited.js.map M static/maps/mvc/library/library-dataset-view.js.map M static/maps/mvc/library/library-folder-view.js.map M static/maps/mvc/library/library-folderlist-view.js.map M static/maps/mvc/library/library-folderrow-view.js.map M static/maps/mvc/library/library-foldertoolbar-view.js.map M static/maps/mvc/library/library-library-view.js.map M static/maps/mvc/library/library-librarylist-view.js.map M static/maps/mvc/library/library-libraryrow-view.js.map M static/maps/mvc/library/library-librarytoolbar-view.js.map M static/maps/mvc/library/library-model.js.map M static/maps/mvc/list/list-item.js.map M static/maps/mvc/list/list-view.js.map M static/maps/mvc/tag.js.map M static/maps/mvc/tool/tool-form-base.js.map M static/maps/mvc/tool/tool-form-composite.js.map M static/maps/mvc/tool/tool-form.js.map M static/maps/mvc/tool/tool-genomespace.js.map M static/maps/mvc/tool/tools.js.map M static/maps/mvc/toolshed/categories-view.js.map M static/maps/mvc/toolshed/repo-queue-view.js.map M static/maps/mvc/toolshed/repo-status-view.js.map M static/maps/mvc/toolshed/repositories-view.js.map M static/maps/mvc/toolshed/repository-queue-view.js.map M static/maps/mvc/toolshed/repository-view.js.map M static/maps/mvc/toolshed/shed-list-view.js.map M static/maps/mvc/toolshed/toolshed-model.js.map M static/maps/mvc/toolshed/util.js.map M static/maps/mvc/toolshed/workflows-view.js.map M static/maps/mvc/tours.js.map M static/maps/mvc/ui/error-modal.js.map M static/maps/mvc/ui/icon-button.js.map M static/maps/mvc/ui/popup-menu.js.map M static/maps/mvc/ui/ui-buttons.js.map M static/maps/mvc/ui/ui-color-picker.js.map M static/maps/mvc/ui/ui-drilldown.js.map M static/maps/mvc/ui/ui-frames.js.map M static/maps/mvc/ui/ui-list.js.map M static/maps/mvc/ui/ui-misc.js.map M static/maps/mvc/ui/ui-modal.js.map M static/maps/mvc/ui/ui-options.js.map M static/maps/mvc/ui/ui-popover.js.map M static/maps/mvc/ui/ui-portlet.js.map M static/maps/mvc/ui/ui-select-content.js.map M static/maps/mvc/ui/ui-select-default.js.map M static/maps/mvc/ui/ui-select-ftp.js.map M static/maps/mvc/ui/ui-select-genomespace.js.map M static/maps/mvc/ui/ui-select-library.js.map M static/maps/mvc/ui/ui-select.js.map M static/maps/mvc/ui/ui-slider.js.map M static/maps/mvc/ui/ui-table.js.map M static/maps/mvc/ui/ui-tabs.js.map M static/maps/mvc/ui/ui-thumbnails.js.map M static/maps/mvc/upload/collection/collection-row.js.map M static/maps/mvc/upload/collection/collection-view.js.map M static/maps/mvc/upload/composite/composite-row.js.map M static/maps/mvc/upload/composite/composite-view.js.map M static/maps/mvc/upload/default/default-row.js.map M static/maps/mvc/upload/default/default-view.js.map M static/maps/mvc/upload/upload-button.js.map M static/maps/mvc/upload/upload-extension.js.map M static/maps/mvc/upload/upload-ftp.js.map M static/maps/mvc/upload/upload-model.js.map M static/maps/mvc/upload/upload-settings.js.map M static/maps/mvc/upload/upload-view.js.map M static/maps/mvc/user/user-custom-builds.js.map M static/maps/mvc/user/user-model.js.map M static/maps/mvc/user/user-preferences.js.map M static/maps/mvc/user/user-quotameter.js.map M static/maps/mvc/visualization/visualization-model.js.map M static/maps/mvc/webhooks.js.map M static/maps/mvc/workflow/workflow-canvas.js.map M static/maps/mvc/workflow/workflow-connector.js.map M static/maps/mvc/workflow/workflow-forms.js.map M static/maps/mvc/workflow/workflow-icons.js.map M static/maps/mvc/workflow/workflow-manager.js.map M static/maps/mvc/workflow/workflow-model.js.map M static/maps/mvc/workflow/workflow-node.js.map M static/maps/mvc/workflow/workflow-terminals.js.map M static/maps/mvc/workflow/workflow-view-data.js.map M static/maps/mvc/workflow/workflow-view-node.js.map M static/maps/mvc/workflow/workflow-view-terminals.js.map M static/maps/mvc/workflow/workflow-view.js.map M static/maps/mvc/workflow/workflow.js.map M static/maps/nls/de/locale.js.map M static/maps/nls/es/locale.js.map M static/maps/nls/fr/locale.js.map M static/maps/nls/ja/locale.js.map M static/maps/nls/locale.js.map M static/maps/nls/zh/locale.js.map M static/maps/onload.js.map M static/maps/polyfills.js.map M static/maps/reports_webapp/run_stats.js.map M static/maps/ui/autocom_tagging.js.map M static/maps/ui/editable-text.js.map M static/maps/ui/fa-icon-button.js.map M static/maps/ui/filter-control.js.map M static/maps/ui/hoverhighlight.js.map M static/maps/ui/loading-indicator.js.map M static/maps/ui/mode-button.js.map M static/maps/ui/pagination.js.map M static/maps/ui/peek-column-selector.js.map M static/maps/ui/popupmenu.js.map M static/maps/ui/scroll-panel.js.map M static/maps/ui/search-input.js.map M static/maps/utils/add-logging.js.map M static/maps/utils/ajax-queue.js.map M static/maps/utils/async-save-text.js.map M static/maps/utils/config.js.map M static/maps/utils/deferred.js.map M static/maps/utils/graph.js.map M static/maps/utils/levenshtein.js.map M static/maps/utils/localization.js.map M static/maps/utils/metrics-logger.js.map M static/maps/utils/natural-sort.js.map M static/maps/utils/query-string-parsing.js.map M static/maps/utils/uploadbox.js.map M static/maps/utils/utils.js.map M static/maps/viz/bbi-data-manager.js.map M static/maps/viz/circster.js.map M static/maps/viz/phyloviz.js.map M static/maps/viz/sweepster.js.map M static/maps/viz/trackster.js.map M static/maps/viz/trackster/filters.js.map M static/maps/viz/trackster/painters.js.map M static/maps/viz/trackster/slotting.js.map M static/maps/viz/trackster/tracks.js.map M static/maps/viz/trackster/util.js.map M static/maps/viz/visualization.js.map M static/maps/viz/viz_views.js.map M static/scripts/admin.toolshed.js M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/galaxy.interactive_environments.js M static/scripts/galaxy.js M static/scripts/galaxy.library.js M static/scripts/galaxy.pages.js M static/scripts/i18n.js M static/scripts/layout/generic-nav-view.js M static/scripts/layout/masthead.js M static/scripts/layout/menu.js M static/scripts/layout/modal.js M static/scripts/layout/page.js M static/scripts/layout/panel.js M static/scripts/layout/router.js M static/scripts/layout/scratchbook.js M static/scripts/mvc/annotation.js M static/scripts/mvc/base-mvc.js M static/scripts/mvc/base/controlled-fetch-collection.js M static/scripts/mvc/citation/citation-model.js M static/scripts/mvc/citation/citation-view.js M static/scripts/mvc/collection/base-creator.js M static/scripts/mvc/collection/collection-li-edit.js M static/scripts/mvc/collection/collection-li.js M static/scripts/mvc/collection/collection-model.js M static/scripts/mvc/collection/collection-view-edit.js M static/scripts/mvc/collection/collection-view.js M static/scripts/mvc/collection/list-collection-creator.js M static/scripts/mvc/collection/list-of-pairs-collection-creator.js M static/scripts/mvc/collection/pair-collection-creator.js M static/scripts/mvc/dataset/data.js M static/scripts/mvc/dataset/dataset-choice.js M static/scripts/mvc/dataset/dataset-edit-attributes.js M static/scripts/mvc/dataset/dataset-error.js M static/scripts/mvc/dataset/dataset-li-edit.js M static/scripts/mvc/dataset/dataset-li.js M static/scripts/mvc/dataset/dataset-list.js M static/scripts/mvc/dataset/dataset-model.js M static/scripts/mvc/dataset/states.js M static/scripts/mvc/form/form-data.js M static/scripts/mvc/form/form-input.js M static/scripts/mvc/form/form-parameters.js M static/scripts/mvc/form/form-repeat.js M static/scripts/mvc/form/form-section.js M static/scripts/mvc/form/form-view.js M static/scripts/mvc/form/form-wrapper.js M static/scripts/mvc/grid/grid-model.js M static/scripts/mvc/grid/grid-shared.js M static/scripts/mvc/grid/grid-template.js M static/scripts/mvc/grid/grid-view.js M static/scripts/mvc/history/copy-dialog.js M static/scripts/mvc/history/hda-li-edit.js M static/scripts/mvc/history/hda-li.js M static/scripts/mvc/history/hda-model.js M static/scripts/mvc/history/hdca-li-edit.js M static/scripts/mvc/history/hdca-li.js M static/scripts/mvc/history/hdca-model.js M static/scripts/mvc/history/history-content-model.js M static/scripts/mvc/history/history-contents.js M static/scripts/mvc/history/history-list.js M static/scripts/mvc/history/history-model.js M static/scripts/mvc/history/history-preferences.js M static/scripts/mvc/history/history-structure-view.js M static/scripts/mvc/history/history-view-annotated.js M static/scripts/mvc/history/history-view-edit-current.js M static/scripts/mvc/history/history-view-edit.js M static/scripts/mvc/history/history-view.js M static/scripts/mvc/history/job-dag.js M static/scripts/mvc/history/multi-panel.js M static/scripts/mvc/history/options-menu.js M static/scripts/mvc/job/job-li.js M static/scripts/mvc/job/job-model.js M static/scripts/mvc/job/job-params.js M static/scripts/mvc/lazy/lazy-limited.js M static/scripts/mvc/library/library-dataset-view.js M static/scripts/mvc/library/library-folder-view.js M static/scripts/mvc/library/library-folderlist-view.js M static/scripts/mvc/library/library-folderrow-view.js M static/scripts/mvc/library/library-foldertoolbar-view.js M static/scripts/mvc/library/library-library-view.js M static/scripts/mvc/library/library-librarylist-view.js M static/scripts/mvc/library/library-libraryrow-view.js M static/scripts/mvc/library/library-librarytoolbar-view.js M static/scripts/mvc/library/library-model.js M static/scripts/mvc/list/list-item.js M static/scripts/mvc/list/list-view.js M static/scripts/mvc/tag.js M static/scripts/mvc/tool/tool-form-base.js M static/scripts/mvc/tool/tool-form-composite.js M static/scripts/mvc/tool/tool-form.js M static/scripts/mvc/tool/tool-genomespace.js M static/scripts/mvc/tool/tools.js M static/scripts/mvc/toolshed/categories-view.js M static/scripts/mvc/toolshed/repo-queue-view.js M static/scripts/mvc/toolshed/repo-status-view.js M static/scripts/mvc/toolshed/repositories-view.js M static/scripts/mvc/toolshed/repository-queue-view.js M static/scripts/mvc/toolshed/repository-view.js M static/scripts/mvc/toolshed/shed-list-view.js M static/scripts/mvc/toolshed/toolshed-model.js M static/scripts/mvc/toolshed/util.js M static/scripts/mvc/toolshed/workflows-view.js M static/scripts/mvc/tours.js M static/scripts/mvc/ui/error-modal.js M static/scripts/mvc/ui/icon-button.js M static/scripts/mvc/ui/popup-menu.js M static/scripts/mvc/ui/ui-buttons.js M static/scripts/mvc/ui/ui-color-picker.js M static/scripts/mvc/ui/ui-drilldown.js M static/scripts/mvc/ui/ui-frames.js M static/scripts/mvc/ui/ui-list.js M static/scripts/mvc/ui/ui-misc.js M static/scripts/mvc/ui/ui-modal.js M static/scripts/mvc/ui/ui-options.js M static/scripts/mvc/ui/ui-popover.js M static/scripts/mvc/ui/ui-portlet.js M static/scripts/mvc/ui/ui-select-content.js M static/scripts/mvc/ui/ui-select-default.js M static/scripts/mvc/ui/ui-select-ftp.js M static/scripts/mvc/ui/ui-select-genomespace.js M static/scripts/mvc/ui/ui-select-library.js M static/scripts/mvc/ui/ui-select.js M static/scripts/mvc/ui/ui-slider.js M static/scripts/mvc/ui/ui-table.js M static/scripts/mvc/ui/ui-tabs.js M static/scripts/mvc/ui/ui-thumbnails.js M static/scripts/mvc/upload/collection/collection-row.js M static/scripts/mvc/upload/collection/collection-view.js M static/scripts/mvc/upload/composite/composite-row.js M static/scripts/mvc/upload/composite/composite-view.js M static/scripts/mvc/upload/default/default-row.js M static/scripts/mvc/upload/default/default-view.js M static/scripts/mvc/upload/upload-button.js M static/scripts/mvc/upload/upload-extension.js M static/scripts/mvc/upload/upload-ftp.js M static/scripts/mvc/upload/upload-model.js M static/scripts/mvc/upload/upload-settings.js M static/scripts/mvc/upload/upload-view.js M static/scripts/mvc/user/user-custom-builds.js M static/scripts/mvc/user/user-model.js M static/scripts/mvc/user/user-preferences.js M static/scripts/mvc/user/user-quotameter.js M static/scripts/mvc/visualization/visualization-model.js M static/scripts/mvc/webhooks.js M static/scripts/mvc/workflow/workflow-canvas.js M static/scripts/mvc/workflow/workflow-connector.js M static/scripts/mvc/workflow/workflow-forms.js M static/scripts/mvc/workflow/workflow-icons.js M static/scripts/mvc/workflow/workflow-manager.js M static/scripts/mvc/workflow/workflow-model.js M static/scripts/mvc/workflow/workflow-node.js M static/scripts/mvc/workflow/workflow-terminals.js M static/scripts/mvc/workflow/workflow-view-data.js M static/scripts/mvc/workflow/workflow-view-node.js M static/scripts/mvc/workflow/workflow-view-terminals.js M static/scripts/mvc/workflow/workflow-view.js M static/scripts/mvc/workflow/workflow.js M static/scripts/nls/de/locale.js M static/scripts/nls/es/locale.js M static/scripts/nls/fr/locale.js M static/scripts/nls/ja/locale.js M static/scripts/nls/locale.js M static/scripts/nls/zh/locale.js M static/scripts/onload.js M static/scripts/polyfills.js M static/scripts/reports_webapp/run_stats.js M static/scripts/ui/autocom_tagging.js M static/scripts/ui/editable-text.js M static/scripts/ui/fa-icon-button.js M static/scripts/ui/filter-control.js M static/scripts/ui/hoverhighlight.js M static/scripts/ui/loading-indicator.js M static/scripts/ui/mode-button.js M static/scripts/ui/pagination.js M static/scripts/ui/peek-column-selector.js M static/scripts/ui/popupmenu.js M static/scripts/ui/scroll-panel.js M static/scripts/ui/search-input.js M static/scripts/utils/add-logging.js M static/scripts/utils/ajax-queue.js M static/scripts/utils/async-save-text.js M static/scripts/utils/config.js M static/scripts/utils/deferred.js M static/scripts/utils/graph.js M static/scripts/utils/levenshtein.js M static/scripts/utils/localization.js M static/scripts/utils/metrics-logger.js M static/scripts/utils/natural-sort.js M static/scripts/utils/query-string-parsing.js M static/scripts/utils/uploadbox.js M static/scripts/utils/utils.js M static/scripts/viz/bbi-data-manager.js M static/scripts/viz/circster.js M static/scripts/viz/phyloviz.js M static/scripts/viz/sweepster.js M static/scripts/viz/trackster.js M static/scripts/viz/trackster/filters.js M static/scripts/viz/trackster/painters.js M static/scripts/viz/trackster/slotting.js M static/scripts/viz/trackster/tracks.js M static/scripts/viz/trackster/util.js M static/scripts/viz/visualization.js M static/scripts/viz/viz_views.js Log Message: ----------- Fix onload.js import/require issues; now works with babel->amd Commit: 5b196ccdfee832bf2b08276d12c2044200058844 https://github.com/galaxyproject/galaxy/commit/5b196ccdfee832bf2b08276d12c2… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-23 (Mon, 23 Oct 2017) Changed paths: M client/galaxy/scripts/onload.js M static/maps/onload.js.map M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Remove debug cruft. Commit: d745423732d363ee91fcd81f65e7f0038d8f659a https://github.com/galaxyproject/galaxy/commit/d745423732d363ee91fcd81f65e7… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-23 (Mon, 23 Oct 2017) Changed paths: M client/galaxy/scripts/galaxy.js M client/galaxy/scripts/onload.js M static/maps/galaxy.js.map M static/maps/onload.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/galaxy.js Log Message: ----------- Convert galaxy.js imports; minor fixup. Commit: 07e9e94c24c3235a522e3836c575ca6c90bebf3b https://github.com/galaxyproject/galaxy/commit/07e9e94c24c3235a522e3836c575… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-23 (Mon, 23 Oct 2017) Changed paths: M client/galaxy/scripts/apps/analysis.js M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Fix import in analysis.js Commit: 116fb050381ca57752c7204cb0f0301d7d30f0ef https://github.com/galaxyproject/galaxy/commit/116fb050381ca57752c7204cb0f0… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-23 (Mon, 23 Oct 2017) Changed paths: M client/galaxy/scripts/layout/scratchbook.js M static/maps/layout/scratchbook.js.map M static/scripts/bundled/admin.bundled.js M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/layout/scratchbook.js Log Message: ----------- Combine scratchbook requires Commit: a2aae9bbaaddae9ee909452b4597992e76c3820e https://github.com/galaxyproject/galaxy/commit/a2aae9bbaaddae9ee909452b4597… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-23 (Mon, 23 Oct 2017) Changed paths: M client/galaxy/scripts/layout/scratchbook.js M static/maps/layout/scratchbook.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/scratchbook.js Log Message: ----------- Add missing localization import to scratchbook. Commit: d0c9d68e1b6add2617cd24406ae25ff1ccb8ee83 https://github.com/galaxyproject/galaxy/commit/d0c9d68e1b6add2617cd24406ae2… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-23 (Mon, 23 Oct 2017) Changed paths: M client/galaxy/scripts/layout/generic-nav-view.js M client/galaxy/scripts/layout/masthead.js M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/layout/modal.js M client/galaxy/scripts/layout/page.js M client/galaxy/scripts/layout/panel.js M client/galaxy/scripts/layout/scratchbook.js M static/maps/layout/generic-nav-view.js.map M static/maps/layout/masthead.js.map M static/maps/layout/menu.js.map M static/maps/layout/modal.js.map M static/maps/layout/page.js.map M static/maps/layout/panel.js.map M static/maps/layout/scratchbook.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/generic-nav-view.js M static/scripts/layout/masthead.js M static/scripts/layout/menu.js M static/scripts/layout/modal.js M static/scripts/layout/page.js M static/scripts/layout/panel.js M static/scripts/layout/scratchbook.js Log Message: ----------- Convert layout imports. Commit: 97ffc5d2194bf599b24ce4318e6fbdd94bf18eed https://github.com/galaxyproject/galaxy/commit/97ffc5d2194bf599b24ce4318e6f… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-24 (Tue, 24 Oct 2017) Changed paths: M client/galaxy/scripts/viz/bbi-data-manager.js M client/galaxy/scripts/viz/circster.js M client/galaxy/scripts/viz/phyloviz.js M client/galaxy/scripts/viz/sweepster.js M client/galaxy/scripts/viz/trackster.js M client/galaxy/scripts/viz/trackster/filters.js M client/galaxy/scripts/viz/trackster/painters.js M client/galaxy/scripts/viz/trackster/slotting.js M client/galaxy/scripts/viz/trackster/tracks.js M client/galaxy/scripts/viz/trackster/util.js M client/galaxy/scripts/viz/visualization.js M client/galaxy/scripts/viz/viz_views.js M static/maps/viz/bbi-data-manager.js.map M static/maps/viz/circster.js.map M static/maps/viz/phyloviz.js.map M static/maps/viz/sweepster.js.map M static/maps/viz/trackster.js.map M static/maps/viz/trackster/filters.js.map M static/maps/viz/trackster/painters.js.map M static/maps/viz/trackster/slotting.js.map M static/maps/viz/trackster/tracks.js.map M static/maps/viz/trackster/util.js.map M static/maps/viz/visualization.js.map M static/maps/viz/viz_views.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/viz/bbi-data-manager.js M static/scripts/viz/circster.js M static/scripts/viz/phyloviz.js M static/scripts/viz/sweepster.js M static/scripts/viz/trackster.js M static/scripts/viz/trackster/filters.js M static/scripts/viz/trackster/painters.js M static/scripts/viz/trackster/slotting.js M static/scripts/viz/trackster/tracks.js M static/scripts/viz/trackster/util.js M static/scripts/viz/visualization.js M static/scripts/viz/viz_views.js Log Message: ----------- Fix multiple defines/requires in several viz/* modules, and convert to es6 imports. Commit: b41ed6b87b3821892aed4324cc21caf281bfb4c3 https://github.com/galaxyproject/galaxy/commit/b41ed6b87b3821892aed4324cc21… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-24 (Tue, 24 Oct 2017) Changed paths: M client/galaxy/scripts/mvc/citation/citation-model.js M client/galaxy/scripts/mvc/citation/citation-view.js M static/maps/mvc/citation/citation-model.js.map M static/maps/mvc/citation/citation-view.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/citation/citation-model.js M static/scripts/mvc/citation/citation-view.js Log Message: ----------- Citations overhaul with 'import * from bibtex' -- this maybe works? Commit: 126811849f1ec53bd57ac0282f08fb0be52038f7 https://github.com/galaxyproject/galaxy/commit/126811849f1ec53bd57ac0282f08… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-24 (Tue, 24 Oct 2017) Changed paths: M client/galaxy/scripts/apps/panels/history-panel.js M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Fix CurrentHistoryView import, kinda kludgy, may rework. Commit: c771c4e67aeb0ef0c9a560da94f6f557980c9475 https://github.com/galaxyproject/galaxy/commit/c771c4e67aeb0ef0c9a560da94f6… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-24 (Tue, 24 Oct 2017) Changed paths: M client/galaxy/scripts/mvc/ui/error-modal.js M client/galaxy/scripts/mvc/ui/icon-button.js M client/galaxy/scripts/mvc/ui/popup-menu.js M client/galaxy/scripts/mvc/ui/ui-buttons.js M client/galaxy/scripts/mvc/ui/ui-color-picker.js M client/galaxy/scripts/mvc/ui/ui-drilldown.js M client/galaxy/scripts/mvc/ui/ui-frames.js M client/galaxy/scripts/mvc/ui/ui-list.js M client/galaxy/scripts/mvc/ui/ui-misc.js M client/galaxy/scripts/mvc/ui/ui-modal.js M client/galaxy/scripts/mvc/ui/ui-options.js M client/galaxy/scripts/mvc/ui/ui-popover.js M client/galaxy/scripts/mvc/ui/ui-portlet.js M client/galaxy/scripts/mvc/ui/ui-select-content.js M client/galaxy/scripts/mvc/ui/ui-select-default.js M client/galaxy/scripts/mvc/ui/ui-select-ftp.js M client/galaxy/scripts/mvc/ui/ui-select-genomespace.js M client/galaxy/scripts/mvc/ui/ui-select-library.js M client/galaxy/scripts/mvc/ui/ui-select.js M client/galaxy/scripts/mvc/ui/ui-slider.js M client/galaxy/scripts/mvc/ui/ui-table.js M client/galaxy/scripts/mvc/ui/ui-tabs.js M client/galaxy/scripts/mvc/ui/ui-thumbnails.js M static/maps/mvc/ui/error-modal.js.map M static/maps/mvc/ui/icon-button.js.map M static/maps/mvc/ui/popup-menu.js.map M static/maps/mvc/ui/ui-buttons.js.map M static/maps/mvc/ui/ui-color-picker.js.map M static/maps/mvc/ui/ui-drilldown.js.map M static/maps/mvc/ui/ui-frames.js.map M static/maps/mvc/ui/ui-list.js.map M static/maps/mvc/ui/ui-misc.js.map M static/maps/mvc/ui/ui-modal.js.map M static/maps/mvc/ui/ui-options.js.map M static/maps/mvc/ui/ui-popover.js.map M static/maps/mvc/ui/ui-portlet.js.map M static/maps/mvc/ui/ui-select-content.js.map M static/maps/mvc/ui/ui-select-default.js.map M static/maps/mvc/ui/ui-select-ftp.js.map M static/maps/mvc/ui/ui-select-genomespace.js.map M static/maps/mvc/ui/ui-select-library.js.map M static/maps/mvc/ui/ui-select.js.map M static/maps/mvc/ui/ui-slider.js.map M static/maps/mvc/ui/ui-table.js.map M static/maps/mvc/ui/ui-tabs.js.map M static/maps/mvc/ui/ui-thumbnails.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/error-modal.js M static/scripts/mvc/ui/icon-button.js M static/scripts/mvc/ui/popup-menu.js M static/scripts/mvc/ui/ui-buttons.js M static/scripts/mvc/ui/ui-color-picker.js M static/scripts/mvc/ui/ui-drilldown.js M static/scripts/mvc/ui/ui-frames.js M static/scripts/mvc/ui/ui-list.js M static/scripts/mvc/ui/ui-misc.js M static/scripts/mvc/ui/ui-modal.js M static/scripts/mvc/ui/ui-options.js M static/scripts/mvc/ui/ui-popover.js M static/scripts/mvc/ui/ui-portlet.js M static/scripts/mvc/ui/ui-select-content.js M static/scripts/mvc/ui/ui-select-default.js M static/scripts/mvc/ui/ui-select-ftp.js M static/scripts/mvc/ui/ui-select-genomespace.js M static/scripts/mvc/ui/ui-select-library.js M static/scripts/mvc/ui/ui-select.js M static/scripts/mvc/ui/ui-slider.js M static/scripts/mvc/ui/ui-table.js M static/scripts/mvc/ui/ui-tabs.js M static/scripts/mvc/ui/ui-thumbnails.js Log Message: ----------- Convert imports in mvc/ui/*; this one was clean. Commit: 9fb8b3d78d51c729cfe75066b7f97663952fa44a https://github.com/galaxyproject/galaxy/commit/9fb8b3d78d51c729cfe75066b7f9… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-24 (Tue, 24 Oct 2017) Changed paths: M client/galaxy/scripts/utils/uploadbox.js Log Message: ----------- Fix mode of uploadbox.js Commit: 2eed28cf747bc65d7598042470b857e669d338e7 https://github.com/galaxyproject/galaxy/commit/2eed28cf747bc65d7598042470b8… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-24 (Tue, 24 Oct 2017) Changed paths: M client/galaxy/scripts/utils/add-logging.js M client/galaxy/scripts/utils/ajax-queue.js M client/galaxy/scripts/utils/async-save-text.js M client/galaxy/scripts/utils/config.js M client/galaxy/scripts/utils/deferred.js M client/galaxy/scripts/utils/graph.js M client/galaxy/scripts/utils/levenshtein.js M client/galaxy/scripts/utils/metrics-logger.js M client/galaxy/scripts/utils/natural-sort.js M client/galaxy/scripts/utils/query-string-parsing.js M client/galaxy/scripts/utils/utils.js M static/maps/utils/add-logging.js.map M static/maps/utils/ajax-queue.js.map M static/maps/utils/async-save-text.js.map M static/maps/utils/config.js.map M static/maps/utils/deferred.js.map M static/maps/utils/graph.js.map M static/maps/utils/levenshtein.js.map M static/maps/utils/metrics-logger.js.map M static/maps/utils/natural-sort.js.map M static/maps/utils/query-string-parsing.js.map M static/maps/utils/utils.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/utils/add-logging.js M static/scripts/utils/ajax-queue.js M static/scripts/utils/async-save-text.js M static/scripts/utils/config.js M static/scripts/utils/deferred.js M static/scripts/utils/graph.js M static/scripts/utils/levenshtein.js M static/scripts/utils/metrics-logger.js M static/scripts/utils/natural-sort.js M static/scripts/utils/query-string-parsing.js M static/scripts/utils/uploadbox.js M static/scripts/utils/utils.js Log Message: ----------- Utils conversion, minus _l Commit: 8675188090bcd00fd8c1e370db04f3d7bf1c26e7 https://github.com/galaxyproject/galaxy/commit/8675188090bcd00fd8c1e370db04… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-25 (Wed, 25 Oct 2017) Changed paths: M client/galaxy/scripts/ui/autocom_tagging.js M client/galaxy/scripts/ui/editable-text.js M client/galaxy/scripts/ui/fa-icon-button.js M client/galaxy/scripts/ui/filter-control.js M client/galaxy/scripts/ui/hoverhighlight.js M client/galaxy/scripts/ui/loading-indicator.js M client/galaxy/scripts/ui/mode-button.js M client/galaxy/scripts/ui/pagination.js M client/galaxy/scripts/ui/peek-column-selector.js M client/galaxy/scripts/ui/popupmenu.js M client/galaxy/scripts/ui/search-input.js M static/maps/ui/autocom_tagging.js.map M static/maps/ui/editable-text.js.map M static/maps/ui/fa-icon-button.js.map M static/maps/ui/filter-control.js.map M static/maps/ui/hoverhighlight.js.map M static/maps/ui/loading-indicator.js.map M static/maps/ui/mode-button.js.map M static/maps/ui/pagination.js.map M static/maps/ui/peek-column-selector.js.map M static/maps/ui/popupmenu.js.map M static/maps/ui/search-input.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/ui/autocom_tagging.js M static/scripts/ui/editable-text.js M static/scripts/ui/fa-icon-button.js M static/scripts/ui/filter-control.js M static/scripts/ui/hoverhighlight.js M static/scripts/ui/loading-indicator.js M static/scripts/ui/mode-button.js M static/scripts/ui/pagination.js M static/scripts/ui/peek-column-selector.js M static/scripts/ui/popupmenu.js M static/scripts/ui/search-input.js Log Message: ----------- Update ui/* jquery plugin definitions, convert to es6. Commit: 393912977122df01074cb51ac40820d6b7cb5916 https://github.com/galaxyproject/galaxy/commit/393912977122df01074cb51ac408… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-25 (Wed, 25 Oct 2017) Changed paths: M client/galaxy/scripts/mvc/visualization/visualization-model.js Log Message: ----------- Remove cruft in visualization-model.js Commit: 125367a49efdc2e46c910e1282629baa4c8b41dd https://github.com/galaxyproject/galaxy/commit/125367a49efdc2e46c910e128262… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-25 (Wed, 25 Oct 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-canvas.js M client/galaxy/scripts/mvc/workflow/workflow-connector.js M client/galaxy/scripts/mvc/workflow/workflow-forms.js M client/galaxy/scripts/mvc/workflow/workflow-icons.js M client/galaxy/scripts/mvc/workflow/workflow-manager.js M client/galaxy/scripts/mvc/workflow/workflow-model.js M client/galaxy/scripts/mvc/workflow/workflow-node.js M client/galaxy/scripts/mvc/workflow/workflow-terminals.js M client/galaxy/scripts/mvc/workflow/workflow-view-data.js M client/galaxy/scripts/mvc/workflow/workflow-view-node.js M client/galaxy/scripts/mvc/workflow/workflow-view-terminals.js M client/galaxy/scripts/mvc/workflow/workflow-view.js M client/galaxy/scripts/mvc/workflow/workflow.js M static/maps/mvc/visualization/visualization-model.js.map M static/maps/mvc/workflow/workflow-canvas.js.map M static/maps/mvc/workflow/workflow-connector.js.map M static/maps/mvc/workflow/workflow-forms.js.map M static/maps/mvc/workflow/workflow-icons.js.map M static/maps/mvc/workflow/workflow-manager.js.map M static/maps/mvc/workflow/workflow-model.js.map M static/maps/mvc/workflow/workflow-node.js.map M static/maps/mvc/workflow/workflow-terminals.js.map M static/maps/mvc/workflow/workflow-view-data.js.map M static/maps/mvc/workflow/workflow-view-node.js.map M static/maps/mvc/workflow/workflow-view-terminals.js.map M static/maps/mvc/workflow/workflow-view.js.map M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow-canvas.js M static/scripts/mvc/workflow/workflow-connector.js M static/scripts/mvc/workflow/workflow-forms.js M static/scripts/mvc/workflow/workflow-icons.js M static/scripts/mvc/workflow/workflow-manager.js M static/scripts/mvc/workflow/workflow-model.js M static/scripts/mvc/workflow/workflow-node.js M static/scripts/mvc/workflow/workflow-terminals.js M static/scripts/mvc/workflow/workflow-view-data.js M static/scripts/mvc/workflow/workflow-view-node.js M static/scripts/mvc/workflow/workflow-view-terminals.js M static/scripts/mvc/workflow/workflow-view.js M static/scripts/mvc/workflow/workflow.js Log Message: ----------- Convert mvc/workflow/*; needs a followup on global handling here. Commit: 6eed84d4f6d23130e320e8feb8c5737d5bd63d58 https://github.com/galaxyproject/galaxy/commit/6eed84d4f6d23130e320e8feb8c5… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-25 (Wed, 25 Oct 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-terminals.js M client/galaxy/scripts/mvc/workflow/workflow-view-data.js M client/galaxy/scripts/mvc/workflow/workflow-view-terminals.js M client/galaxy/scripts/mvc/workflow/workflow-view.js M static/maps/mvc/workflow/workflow-terminals.js.map M static/maps/mvc/workflow/workflow-view-data.js.map M static/maps/mvc/workflow/workflow-view-terminals.js.map M static/maps/mvc/workflow/workflow-view.js.map M static/scripts/mvc/workflow/workflow-terminals.js M static/scripts/mvc/workflow/workflow-view-data.js M static/scripts/mvc/workflow/workflow-view-terminals.js M static/scripts/mvc/workflow/workflow-view.js Log Message: ----------- Attach workflow globals to window, temporarily. We can refactor and use a singleton in a module down the road or something else. Commit: 630d9fdd9d9fe8d2261f52810beb2d0b97c8e40e https://github.com/galaxyproject/galaxy/commit/630d9fdd9d9fe8d2261f52810beb… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-25 (Wed, 25 Oct 2017) Changed paths: M client/galaxy/scripts/apps/admin.js M client/galaxy/scripts/apps/login.js M static/scripts/bundled/admin.bundled.js M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map Log Message: ----------- Fix imports (batch vs single export) for apps. Commit: 0cbd9476724457de497075e417f834c03f42105f https://github.com/galaxyproject/galaxy/commit/0cbd9476724457de497075e417f8… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-25 (Wed, 25 Oct 2017) Changed paths: M client/galaxy/scripts/galaxy.js M client/galaxy/scripts/layout/panel.js M client/galaxy/scripts/mvc/base-mvc.js M client/galaxy/scripts/mvc/base/controlled-fetch-collection.js M client/galaxy/scripts/mvc/tool/tools.js M client/galaxy/scripts/mvc/tours.js M client/galaxy/scripts/mvc/user/user-model.js M client/galaxy/scripts/mvc/workflow/workflow-manager.js M client/galaxy/scripts/mvc/workflow/workflow-view-node.js M client/galaxy/scripts/mvc/workflow/workflow-view.js M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/scripts/utils/config.js M client/galaxy/scripts/viz/bbi-data-manager.js M client/galaxy/scripts/viz/circster.js M client/galaxy/scripts/viz/phyloviz.js M client/galaxy/scripts/viz/sweepster.js M client/galaxy/scripts/viz/trackster.js M client/galaxy/scripts/viz/trackster/filters.js M client/galaxy/scripts/viz/trackster/painters.js M client/galaxy/scripts/viz/trackster/slotting.js M client/galaxy/scripts/viz/trackster/tracks.js M client/galaxy/scripts/viz/visualization.js M client/galaxy/scripts/viz/viz_views.js M static/maps/galaxy.js.map M static/maps/layout/panel.js.map M static/maps/mvc/base-mvc.js.map M static/maps/mvc/base/controlled-fetch-collection.js.map M static/maps/mvc/tool/tools.js.map M static/maps/mvc/tours.js.map M static/maps/mvc/user/user-model.js.map M static/maps/mvc/workflow/workflow-manager.js.map M static/maps/mvc/workflow/workflow-view-node.js.map M static/maps/mvc/workflow/workflow-view.js.map M static/maps/mvc/workflow/workflow.js.map M static/maps/utils/config.js.map M static/maps/viz/bbi-data-manager.js.map M static/maps/viz/circster.js.map M static/maps/viz/phyloviz.js.map M static/maps/viz/sweepster.js.map M static/maps/viz/trackster.js.map M static/maps/viz/trackster/filters.js.map M static/maps/viz/trackster/painters.js.map M static/maps/viz/trackster/slotting.js.map M static/maps/viz/trackster/tracks.js.map M static/maps/viz/visualization.js.map M static/maps/viz/viz_views.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/galaxy.js M static/scripts/layout/panel.js M static/scripts/mvc/base-mvc.js M static/scripts/mvc/base/controlled-fetch-collection.js M static/scripts/mvc/tool/tools.js M static/scripts/mvc/tours.js M static/scripts/mvc/user/user-model.js M static/scripts/mvc/workflow/workflow-manager.js M static/scripts/mvc/workflow/workflow-view-node.js M static/scripts/mvc/workflow/workflow-view.js M static/scripts/mvc/workflow/workflow.js M static/scripts/utils/config.js M static/scripts/viz/bbi-data-manager.js M static/scripts/viz/circster.js M static/scripts/viz/phyloviz.js M static/scripts/viz/sweepster.js M static/scripts/viz/trackster.js M static/scripts/viz/trackster/filters.js M static/scripts/viz/trackster/painters.js M static/scripts/viz/trackster/slotting.js M static/scripts/viz/trackster/tracks.js M static/scripts/viz/visualization.js M static/scripts/viz/viz_views.js Log Message: ----------- Import libs w/ named *; see interop wildcard Commit: e12c05d6b4b5622eb093c9bf5dab9c86ad64f8c5 https://github.com/galaxyproject/galaxy/commit/e12c05d6b4b5622eb093c9bf5dab… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-25 (Wed, 25 Oct 2017) Changed paths: M client/gulpfile.js Log Message: ----------- Remove gulp's redundant babel preset. Commit: 66d0da6d7054be7b4603c430beff6858ef3f015a https://github.com/galaxyproject/galaxy/commit/66d0da6d7054be7b4603c430beff… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-25 (Wed, 25 Oct 2017) Changed paths: M client/.babelrc M client/gulpfile.js M static/maps/admin.toolshed.js.map M static/maps/galaxy.js.map M static/maps/galaxy.library.js.map M static/maps/galaxy.pages.js.map M static/maps/i18n.js.map M static/maps/layout/generic-nav-view.js.map M static/maps/layout/masthead.js.map M static/maps/layout/menu.js.map M static/maps/layout/modal.js.map M static/maps/layout/page.js.map M static/maps/layout/panel.js.map M static/maps/layout/router.js.map M static/maps/layout/scratchbook.js.map M static/maps/mvc/annotation.js.map M static/maps/mvc/base-mvc.js.map M static/maps/mvc/base/controlled-fetch-collection.js.map M static/maps/mvc/citation/citation-model.js.map M static/maps/mvc/citation/citation-view.js.map M static/maps/mvc/collection/base-creator.js.map M static/maps/mvc/collection/collection-li-edit.js.map M static/maps/mvc/collection/collection-li.js.map M static/maps/mvc/collection/collection-model.js.map M static/maps/mvc/collection/collection-view-edit.js.map M static/maps/mvc/collection/collection-view.js.map M static/maps/mvc/collection/list-collection-creator.js.map M static/maps/mvc/collection/list-of-pairs-collection-creator.js.map M static/maps/mvc/collection/pair-collection-creator.js.map M static/maps/mvc/dataset/data.js.map M static/maps/mvc/dataset/dataset-choice.js.map M static/maps/mvc/dataset/dataset-edit-attributes.js.map M static/maps/mvc/dataset/dataset-error.js.map M static/maps/mvc/dataset/dataset-li-edit.js.map M static/maps/mvc/dataset/dataset-li.js.map M static/maps/mvc/dataset/dataset-list.js.map M static/maps/mvc/dataset/dataset-model.js.map M static/maps/mvc/dataset/states.js.map M static/maps/mvc/form/form-data.js.map M static/maps/mvc/form/form-input.js.map M static/maps/mvc/form/form-parameters.js.map M static/maps/mvc/form/form-repeat.js.map M static/maps/mvc/form/form-section.js.map M static/maps/mvc/form/form-view.js.map M static/maps/mvc/form/form-wrapper.js.map M static/maps/mvc/grid/grid-model.js.map M static/maps/mvc/grid/grid-shared.js.map M static/maps/mvc/grid/grid-template.js.map M static/maps/mvc/grid/grid-view.js.map M static/maps/mvc/history/copy-dialog.js.map M static/maps/mvc/history/hda-li-edit.js.map M static/maps/mvc/history/hda-li.js.map M static/maps/mvc/history/hda-model.js.map M static/maps/mvc/history/hdca-li-edit.js.map M static/maps/mvc/history/hdca-li.js.map M static/maps/mvc/history/hdca-model.js.map M static/maps/mvc/history/history-content-model.js.map M static/maps/mvc/history/history-contents.js.map M static/maps/mvc/history/history-list.js.map M static/maps/mvc/history/history-model.js.map M static/maps/mvc/history/history-preferences.js.map M static/maps/mvc/history/history-structure-view.js.map M static/maps/mvc/history/history-view-annotated.js.map M static/maps/mvc/history/history-view-edit-current.js.map M static/maps/mvc/history/history-view-edit.js.map M static/maps/mvc/history/history-view.js.map M static/maps/mvc/history/job-dag.js.map M static/maps/mvc/history/multi-panel.js.map M static/maps/mvc/history/options-menu.js.map M static/maps/mvc/job/job-li.js.map M static/maps/mvc/job/job-model.js.map M static/maps/mvc/job/job-params.js.map M static/maps/mvc/lazy/lazy-limited.js.map M static/maps/mvc/library/library-dataset-view.js.map M static/maps/mvc/library/library-folder-view.js.map M static/maps/mvc/library/library-folderlist-view.js.map M static/maps/mvc/library/library-folderrow-view.js.map M static/maps/mvc/library/library-foldertoolbar-view.js.map M static/maps/mvc/library/library-library-view.js.map M static/maps/mvc/library/library-librarylist-view.js.map M static/maps/mvc/library/library-libraryrow-view.js.map M static/maps/mvc/library/library-librarytoolbar-view.js.map M static/maps/mvc/library/library-model.js.map M static/maps/mvc/list/list-item.js.map M static/maps/mvc/list/list-view.js.map M static/maps/mvc/tag.js.map M static/maps/mvc/tool/tool-form-base.js.map M static/maps/mvc/tool/tool-form-composite.js.map M static/maps/mvc/tool/tool-form.js.map M static/maps/mvc/tool/tool-genomespace.js.map M static/maps/mvc/tool/tools.js.map M static/maps/mvc/toolshed/categories-view.js.map M static/maps/mvc/toolshed/repo-queue-view.js.map M static/maps/mvc/toolshed/repo-status-view.js.map M static/maps/mvc/toolshed/repositories-view.js.map M static/maps/mvc/toolshed/repository-queue-view.js.map M static/maps/mvc/toolshed/repository-view.js.map M static/maps/mvc/toolshed/shed-list-view.js.map M static/maps/mvc/toolshed/toolshed-model.js.map M static/maps/mvc/toolshed/util.js.map M static/maps/mvc/toolshed/workflows-view.js.map M static/maps/mvc/tours.js.map M static/maps/mvc/ui/error-modal.js.map M static/maps/mvc/ui/icon-button.js.map M static/maps/mvc/ui/popup-menu.js.map M static/maps/mvc/ui/ui-buttons.js.map M static/maps/mvc/ui/ui-color-picker.js.map M static/maps/mvc/ui/ui-drilldown.js.map M static/maps/mvc/ui/ui-frames.js.map M static/maps/mvc/ui/ui-list.js.map M static/maps/mvc/ui/ui-misc.js.map M static/maps/mvc/ui/ui-modal.js.map M static/maps/mvc/ui/ui-options.js.map M static/maps/mvc/ui/ui-popover.js.map M static/maps/mvc/ui/ui-portlet.js.map M static/maps/mvc/ui/ui-select-content.js.map M static/maps/mvc/ui/ui-select-default.js.map M static/maps/mvc/ui/ui-select-ftp.js.map M static/maps/mvc/ui/ui-select-genomespace.js.map M static/maps/mvc/ui/ui-select-library.js.map M static/maps/mvc/ui/ui-select.js.map M static/maps/mvc/ui/ui-slider.js.map M static/maps/mvc/ui/ui-table.js.map M static/maps/mvc/ui/ui-tabs.js.map M static/maps/mvc/ui/ui-thumbnails.js.map M static/maps/mvc/upload/collection/collection-row.js.map M static/maps/mvc/upload/collection/collection-view.js.map M static/maps/mvc/upload/composite/composite-row.js.map M static/maps/mvc/upload/composite/composite-view.js.map M static/maps/mvc/upload/default/default-row.js.map M static/maps/mvc/upload/default/default-view.js.map M static/maps/mvc/upload/upload-button.js.map M static/maps/mvc/upload/upload-extension.js.map M static/maps/mvc/upload/upload-ftp.js.map M static/maps/mvc/upload/upload-model.js.map M static/maps/mvc/upload/upload-settings.js.map M static/maps/mvc/upload/upload-view.js.map M static/maps/mvc/user/user-custom-builds.js.map M static/maps/mvc/user/user-model.js.map M static/maps/mvc/user/user-preferences.js.map M static/maps/mvc/user/user-quotameter.js.map M static/maps/mvc/visualization/visualization-model.js.map M static/maps/mvc/webhooks.js.map M static/maps/mvc/workflow/workflow-canvas.js.map M static/maps/mvc/workflow/workflow-connector.js.map M static/maps/mvc/workflow/workflow-forms.js.map M static/maps/mvc/workflow/workflow-icons.js.map M static/maps/mvc/workflow/workflow-manager.js.map M static/maps/mvc/workflow/workflow-model.js.map M static/maps/mvc/workflow/workflow-node.js.map M static/maps/mvc/workflow/workflow-terminals.js.map M static/maps/mvc/workflow/workflow-view-data.js.map M static/maps/mvc/workflow/workflow-view-node.js.map M static/maps/mvc/workflow/workflow-view-terminals.js.map M static/maps/mvc/workflow/workflow-view.js.map M static/maps/mvc/workflow/workflow.js.map M static/maps/nls/de/locale.js.map M static/maps/nls/es/locale.js.map M static/maps/nls/fr/locale.js.map M static/maps/nls/ja/locale.js.map M static/maps/nls/locale.js.map M static/maps/nls/zh/locale.js.map M static/maps/onload.js.map M static/maps/polyfills.js.map M static/maps/ui/autocom_tagging.js.map M static/maps/ui/editable-text.js.map M static/maps/ui/fa-icon-button.js.map M static/maps/ui/filter-control.js.map M static/maps/ui/hoverhighlight.js.map M static/maps/ui/loading-indicator.js.map M static/maps/ui/mode-button.js.map M static/maps/ui/pagination.js.map M static/maps/ui/peek-column-selector.js.map M static/maps/ui/popupmenu.js.map M static/maps/ui/scroll-panel.js.map M static/maps/ui/search-input.js.map M static/maps/utils/add-logging.js.map M static/maps/utils/ajax-queue.js.map M static/maps/utils/async-save-text.js.map M static/maps/utils/config.js.map M static/maps/utils/deferred.js.map M static/maps/utils/graph.js.map M static/maps/utils/levenshtein.js.map M static/maps/utils/localization.js.map M static/maps/utils/metrics-logger.js.map M static/maps/utils/natural-sort.js.map M static/maps/utils/query-string-parsing.js.map M static/maps/utils/uploadbox.js.map M static/maps/utils/utils.js.map M static/maps/viz/bbi-data-manager.js.map M static/maps/viz/circster.js.map M static/maps/viz/phyloviz.js.map M static/maps/viz/sweepster.js.map M static/maps/viz/trackster.js.map M static/maps/viz/trackster/filters.js.map M static/maps/viz/trackster/painters.js.map M static/maps/viz/trackster/slotting.js.map M static/maps/viz/trackster/tracks.js.map M static/maps/viz/trackster/util.js.map M static/maps/viz/visualization.js.map M static/maps/viz/viz_views.js.map M static/scripts/admin.toolshed.js M static/scripts/galaxy.interactive_environments.js M static/scripts/galaxy.js M static/scripts/galaxy.library.js M static/scripts/galaxy.pages.js M static/scripts/i18n.js M static/scripts/layout/generic-nav-view.js M static/scripts/layout/masthead.js M static/scripts/layout/menu.js M static/scripts/layout/modal.js M static/scripts/layout/page.js M static/scripts/layout/panel.js M static/scripts/layout/router.js M static/scripts/layout/scratchbook.js M static/scripts/mvc/annotation.js M static/scripts/mvc/base-mvc.js M static/scripts/mvc/base/controlled-fetch-collection.js M static/scripts/mvc/citation/citation-model.js M static/scripts/mvc/citation/citation-view.js M static/scripts/mvc/collection/base-creator.js M static/scripts/mvc/collection/collection-li-edit.js M 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static/scripts/mvc/history/history-view-edit.js M static/scripts/mvc/history/history-view.js M static/scripts/mvc/history/job-dag.js M static/scripts/mvc/history/multi-panel.js M static/scripts/mvc/history/options-menu.js M static/scripts/mvc/job/job-li.js M static/scripts/mvc/job/job-model.js M static/scripts/mvc/job/job-params.js M static/scripts/mvc/lazy/lazy-limited.js M static/scripts/mvc/library/library-dataset-view.js M static/scripts/mvc/library/library-folder-view.js M static/scripts/mvc/library/library-folderlist-view.js M static/scripts/mvc/library/library-folderrow-view.js M static/scripts/mvc/library/library-foldertoolbar-view.js M static/scripts/mvc/library/library-library-view.js M static/scripts/mvc/library/library-librarylist-view.js M static/scripts/mvc/library/library-libraryrow-view.js M static/scripts/mvc/library/library-librarytoolbar-view.js M static/scripts/mvc/library/library-model.js M static/scripts/mvc/list/list-item.js M static/scripts/mvc/list/list-view.js M static/scripts/mvc/tag.js M static/scripts/mvc/tool/tool-form-base.js M static/scripts/mvc/tool/tool-form-composite.js M static/scripts/mvc/tool/tool-form.js M static/scripts/mvc/tool/tool-genomespace.js M static/scripts/mvc/tool/tools.js M static/scripts/mvc/toolshed/categories-view.js M static/scripts/mvc/toolshed/repo-queue-view.js M static/scripts/mvc/toolshed/repo-status-view.js M static/scripts/mvc/toolshed/repositories-view.js M static/scripts/mvc/toolshed/repository-queue-view.js M static/scripts/mvc/toolshed/repository-view.js M static/scripts/mvc/toolshed/shed-list-view.js M static/scripts/mvc/toolshed/toolshed-model.js M static/scripts/mvc/toolshed/util.js M static/scripts/mvc/toolshed/workflows-view.js M static/scripts/mvc/tours.js M static/scripts/mvc/ui/error-modal.js M static/scripts/mvc/ui/icon-button.js M static/scripts/mvc/ui/popup-menu.js M static/scripts/mvc/ui/ui-buttons.js M static/scripts/mvc/ui/ui-color-picker.js M static/scripts/mvc/ui/ui-drilldown.js M static/scripts/mvc/ui/ui-frames.js M static/scripts/mvc/ui/ui-list.js M static/scripts/mvc/ui/ui-misc.js M static/scripts/mvc/ui/ui-modal.js M static/scripts/mvc/ui/ui-options.js M static/scripts/mvc/ui/ui-popover.js M static/scripts/mvc/ui/ui-portlet.js M static/scripts/mvc/ui/ui-select-content.js M static/scripts/mvc/ui/ui-select-default.js M static/scripts/mvc/ui/ui-select-ftp.js M static/scripts/mvc/ui/ui-select-genomespace.js M static/scripts/mvc/ui/ui-select-library.js M static/scripts/mvc/ui/ui-select.js M static/scripts/mvc/ui/ui-slider.js M static/scripts/mvc/ui/ui-table.js M static/scripts/mvc/ui/ui-tabs.js M static/scripts/mvc/ui/ui-thumbnails.js M static/scripts/mvc/upload/collection/collection-row.js M static/scripts/mvc/upload/collection/collection-view.js M static/scripts/mvc/upload/composite/composite-row.js M static/scripts/mvc/upload/composite/composite-view.js M static/scripts/mvc/upload/default/default-row.js M static/scripts/mvc/upload/default/default-view.js M static/scripts/mvc/upload/upload-button.js M static/scripts/mvc/upload/upload-extension.js M static/scripts/mvc/upload/upload-ftp.js M static/scripts/mvc/upload/upload-model.js M static/scripts/mvc/upload/upload-settings.js M static/scripts/mvc/upload/upload-view.js M static/scripts/mvc/user/user-custom-builds.js M static/scripts/mvc/user/user-model.js M static/scripts/mvc/user/user-preferences.js M static/scripts/mvc/user/user-quotameter.js M static/scripts/mvc/visualization/visualization-model.js M static/scripts/mvc/webhooks.js M static/scripts/mvc/workflow/workflow-canvas.js M static/scripts/mvc/workflow/workflow-connector.js M static/scripts/mvc/workflow/workflow-forms.js M static/scripts/mvc/workflow/workflow-icons.js M static/scripts/mvc/workflow/workflow-manager.js M static/scripts/mvc/workflow/workflow-model.js M static/scripts/mvc/workflow/workflow-node.js M static/scripts/mvc/workflow/workflow-terminals.js M static/scripts/mvc/workflow/workflow-view-data.js M static/scripts/mvc/workflow/workflow-view-node.js M static/scripts/mvc/workflow/workflow-view-terminals.js M static/scripts/mvc/workflow/workflow-view.js M static/scripts/mvc/workflow/workflow.js M static/scripts/nls/de/locale.js M static/scripts/nls/es/locale.js M static/scripts/nls/fr/locale.js M static/scripts/nls/ja/locale.js M static/scripts/nls/locale.js M static/scripts/nls/zh/locale.js M static/scripts/onload.js M static/scripts/polyfills.js M static/scripts/reports_webapp/run_stats.js M static/scripts/ui/autocom_tagging.js M static/scripts/ui/editable-text.js M static/scripts/ui/fa-icon-button.js M static/scripts/ui/filter-control.js M static/scripts/ui/hoverhighlight.js M static/scripts/ui/loading-indicator.js M static/scripts/ui/mode-button.js M static/scripts/ui/pagination.js M static/scripts/ui/peek-column-selector.js M static/scripts/ui/popupmenu.js M static/scripts/ui/scroll-panel.js M static/scripts/ui/search-input.js M static/scripts/utils/add-logging.js M static/scripts/utils/ajax-queue.js M static/scripts/utils/async-save-text.js M static/scripts/utils/config.js M static/scripts/utils/deferred.js M static/scripts/utils/graph.js M static/scripts/utils/levenshtein.js M static/scripts/utils/localization.js M static/scripts/utils/metrics-logger.js M static/scripts/utils/natural-sort.js M static/scripts/utils/query-string-parsing.js M static/scripts/utils/uploadbox.js M static/scripts/utils/utils.js M static/scripts/viz/bbi-data-manager.js M static/scripts/viz/circster.js M static/scripts/viz/phyloviz.js M static/scripts/viz/sweepster.js M static/scripts/viz/trackster.js M static/scripts/viz/trackster/filters.js M static/scripts/viz/trackster/painters.js M static/scripts/viz/trackster/slotting.js M static/scripts/viz/trackster/tracks.js M static/scripts/viz/trackster/util.js M static/scripts/viz/visualization.js M static/scripts/viz/viz_views.js Log Message: ----------- Add moduleIds to babel transpiling. Commit: 5ec7f9ea9cebb57e85c0fecf8b11043ea86cf521 https://github.com/galaxyproject/galaxy/commit/5ec7f9ea9cebb57e85c0fecf8b11… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-26 (Thu, 26 Oct 2017) Changed paths: M client/galaxy/scripts/i18n.js M static/maps/i18n.js.map M static/scripts/i18n.js Log Message: ----------- Minor bump to i18n.js; probably not the fix I'm looking for though. Commit: d01802c314fa084fd672d70b3bf8186e7cac655a https://github.com/galaxyproject/galaxy/commit/d01802c314fa084fd672d70b3bf8… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-26 (Thu, 26 Oct 2017) Changed paths: M client/.babelrc M static/maps/i18n.js.map M static/maps/utils/localization.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/i18n.js M static/scripts/utils/localization.js Log Message: ----------- Don't mangle the i18n plugin and localization -- require w/ these plugins is a fickle beast. Commit: 4f73d32fd4ff360bfe0a764579bcd067fc91650b https://github.com/galaxyproject/galaxy/commit/4f73d32fd4ff360bfe0a764579bc… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-27 (Fri, 27 Oct 2017) Changed paths: M client/.babelrc M static/maps/nls/de/locale.js.map M static/maps/nls/es/locale.js.map M static/maps/nls/fr/locale.js.map M static/maps/nls/ja/locale.js.map M static/maps/nls/locale.js.map M static/maps/nls/zh/locale.js.map M static/scripts/nls/de/locale.js M static/scripts/nls/es/locale.js M static/scripts/nls/fr/locale.js M static/scripts/nls/ja/locale.js M static/scripts/nls/locale.js M static/scripts/nls/zh/locale.js Log Message: ----------- Don't transpile any i18n bundles. Commit: 17991cefb2420fe532ef7eff7781698f3c65bc06 https://github.com/galaxyproject/galaxy/commit/17991cefb2420fe532ef7eff7781… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-27 (Fri, 27 Oct 2017) Changed paths: M client/galaxy/scripts/mvc/toolshed/categories-view.js M client/galaxy/scripts/mvc/toolshed/repositories-view.js Log Message: ----------- Consolidate dependencies in mvc/shed Commit: bb6f45c6f916ecb96e5984e37c515a8b590e56ca https://github.com/galaxyproject/galaxy/commit/bb6f45c6f916ecb96e5984e37c51… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-27 (Fri, 27 Oct 2017) Changed paths: M client/galaxy/scripts/mvc/toolshed/categories-view.js M client/galaxy/scripts/mvc/toolshed/repo-queue-view.js M client/galaxy/scripts/mvc/toolshed/repo-status-view.js M client/galaxy/scripts/mvc/toolshed/repositories-view.js M client/galaxy/scripts/mvc/toolshed/repository-queue-view.js M client/galaxy/scripts/mvc/toolshed/repository-view.js M client/galaxy/scripts/mvc/toolshed/shed-list-view.js M client/galaxy/scripts/mvc/toolshed/toolshed-model.js M client/galaxy/scripts/mvc/toolshed/util.js M client/galaxy/scripts/mvc/toolshed/workflows-view.js M static/maps/mvc/toolshed/categories-view.js.map M static/maps/mvc/toolshed/repo-queue-view.js.map M static/maps/mvc/toolshed/repo-status-view.js.map M static/maps/mvc/toolshed/repositories-view.js.map M static/maps/mvc/toolshed/repository-queue-view.js.map M static/maps/mvc/toolshed/repository-view.js.map M static/maps/mvc/toolshed/shed-list-view.js.map M static/maps/mvc/toolshed/toolshed-model.js.map M static/maps/mvc/toolshed/util.js.map M static/maps/mvc/toolshed/workflows-view.js.map M static/scripts/mvc/toolshed/categories-view.js M static/scripts/mvc/toolshed/repo-queue-view.js M static/scripts/mvc/toolshed/repo-status-view.js M static/scripts/mvc/toolshed/repositories-view.js M static/scripts/mvc/toolshed/repository-queue-view.js M static/scripts/mvc/toolshed/repository-view.js M static/scripts/mvc/toolshed/shed-list-view.js M static/scripts/mvc/toolshed/toolshed-model.js M static/scripts/mvc/toolshed/util.js M static/scripts/mvc/toolshed/workflows-view.js Log Message: ----------- Imports in mvc/toolshed Commit: 46bddaae6a28351d3cb2c5b97ea6b224698b1c2b https://github.com/galaxyproject/galaxy/commit/46bddaae6a28351d3cb2c5b97ea6… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-27 (Fri, 27 Oct 2017) Changed paths: M client/galaxy/scripts/admin.toolshed.js M client/galaxy/scripts/galaxy.library.js M static/maps/admin.toolshed.js.map M static/maps/galaxy.library.js.map M static/scripts/admin.toolshed.js M static/scripts/galaxy.library.js Log Message: ----------- Last two entrypoint imports converted. Commit: fa18801de1c1ff035868697e77c355d29659e6dc https://github.com/galaxyproject/galaxy/commit/fa18801de1c1ff035868697e77c3… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-27 (Fri, 27 Oct 2017) Changed paths: M client/galaxy/scripts/mvc/library/library-dataset-view.js M client/galaxy/scripts/mvc/library/library-folder-view.js M client/galaxy/scripts/mvc/library/library-folderlist-view.js M client/galaxy/scripts/mvc/library/library-folderrow-view.js M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js M client/galaxy/scripts/mvc/library/library-library-view.js M client/galaxy/scripts/mvc/library/library-librarylist-view.js M client/galaxy/scripts/mvc/library/library-libraryrow-view.js M client/galaxy/scripts/mvc/library/library-librarytoolbar-view.js M client/galaxy/scripts/mvc/library/library-model.js M static/maps/mvc/library/library-dataset-view.js.map M static/maps/mvc/library/library-folder-view.js.map M static/maps/mvc/library/library-folderlist-view.js.map M static/maps/mvc/library/library-folderrow-view.js.map M static/maps/mvc/library/library-foldertoolbar-view.js.map M static/maps/mvc/library/library-library-view.js.map M static/maps/mvc/library/library-librarylist-view.js.map M static/maps/mvc/library/library-libraryrow-view.js.map M static/maps/mvc/library/library-librarytoolbar-view.js.map M static/maps/mvc/library/library-model.js.map M static/scripts/mvc/library/library-dataset-view.js M static/scripts/mvc/library/library-folder-view.js M static/scripts/mvc/library/library-folderlist-view.js M static/scripts/mvc/library/library-folderrow-view.js M static/scripts/mvc/library/library-foldertoolbar-view.js M static/scripts/mvc/library/library-library-view.js M static/scripts/mvc/library/library-librarylist-view.js M static/scripts/mvc/library/library-libraryrow-view.js M static/scripts/mvc/library/library-librarytoolbar-view.js M static/scripts/mvc/library/library-model.js Log Message: ----------- Convert library imports, adjust a few runtime requires. Commit: 0eb4cd8f8694244487f8122b26a3366a6668051b https://github.com/galaxyproject/galaxy/commit/0eb4cd8f8694244487f8122b26a3… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-27 (Fri, 27 Oct 2017) Changed paths: M templates/galaxy_client_app.mako Log Message: ----------- Fix access to default members in Galaxy client app Commit: c888e4dd483d325bf03a0d55e8348e5892409a69 https://github.com/galaxyproject/galaxy/commit/c888e4dd483d325bf03a0d55e834… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-27 (Fri, 27 Oct 2017) Changed paths: M templates/grid_base.mako M templates/webapps/galaxy/galaxy.panels.mako Log Message: ----------- Two more default element fixes for GalaxyApp loading via require() in templates. Commit: 1966be90146b54e98936b6c1c2192043178e124d https://github.com/galaxyproject/galaxy/commit/1966be90146b54e98936b6c1c219… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-27 (Fri, 27 Oct 2017) Changed paths: M templates/grid_base.mako Log Message: ----------- Exported *as* default in GridView, not as an element of a default export dict Commit: 83f118e640dc3fd837eefa0b0bf124df1acbbae1 https://github.com/galaxyproject/galaxy/commit/83f118e640dc3fd837eefa0b0bf1… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-27 (Fri, 27 Oct 2017) Changed paths: M templates/webapps/galaxy/galaxy.masthead.mako Log Message: ----------- Pass args to init of library's masthead correctly. Commit: d85abaad31a7151228fb474e570cb93a308c9fc7 https://github.com/galaxyproject/galaxy/commit/d85abaad31a7151228fb474e570c… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-31 (Tue, 31 Oct 2017) Changed paths: M .ci/flake8_lint_include_list.txt M .travis.yml M Makefile M client/galaxy/scripts/apps/admin.js M client/galaxy/scripts/apps/panels/admin-panel.js M client/galaxy/scripts/galaxy.interactive_environments.js M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/layout/page.js M client/galaxy/scripts/mvc/library/library-dataset-view.js M client/galaxy/scripts/mvc/library/library-folderlist-view.js M client/galaxy/scripts/mvc/library/library-folderrow-view.js M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js M client/galaxy/scripts/mvc/library/library-librarylist-view.js M client/galaxy/scripts/mvc/library/library-libraryrow-view.js M client/galaxy/scripts/mvc/library/library-librarytoolbar-view.js M client/galaxy/scripts/mvc/library/library-model.js A client/galaxy/scripts/mvc/library/library-util.js M client/galaxy/scripts/mvc/toolshed/repository-queue-view.js M client/galaxy/scripts/mvc/toolshed/repository-view.js M client/galaxy/scripts/mvc/tours.js M client/galaxy/scripts/utils/utils.js M client/galaxy/style/less/base.less M client/galaxy/style/less/library.less M client/galaxy/style/less/ui.less M client/galaxy/style/less/upload.less M client/gulpfile.js M client/package.json M client/yarn.lock M config/datatypes_conf.xml.sample M config/galaxy.ini.sample M config/local_conda_mapping.yml.sample M config/plugins/interactive_environments/jupyter/static/js/jupyter.js M config/plugins/tours/core.galaxy_ui.yaml M config/plugins/tours/core.history.yaml M config/plugins/tours/core.scratchbook.yaml M config/plugins/webhooks/demo/tour_generator/helper/__init__.py M cron/add_manual_builds.py M cron/build_chrom_db.py M cron/parse_builds.py M cron/parse_builds_3_sites.py M doc/schema_template.md A doc/source/releases/17.09.rst M doc/source/releases/17.09_announce.rst A doc/source/releases/18.01_announce.rst M doc/source/releases/index.rst M lib/galaxy/auth/providers/ldap_ad.py M lib/galaxy/config.py M lib/galaxy/containers/docker_model.py M lib/galaxy/datatypes/annotation.py M lib/galaxy/datatypes/assembly.py M lib/galaxy/datatypes/binary.py M lib/galaxy/datatypes/constructive_solid_geometry.py M lib/galaxy/datatypes/converters/bed_to_gff_converter.py M lib/galaxy/datatypes/converters/fastqsolexa_to_qual_converter.py M lib/galaxy/datatypes/converters/gff_to_bed_converter.py M lib/galaxy/datatypes/converters/interval_to_bed_converter.py M lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.py M lib/galaxy/datatypes/converters/interval_to_coverage.py M lib/galaxy/datatypes/converters/interval_to_fli.py M lib/galaxy/datatypes/converters/lped_to_fped_converter.py M lib/galaxy/datatypes/converters/lped_to_pbed_converter.py M 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tools/filters/ucsc_gene_bed_to_intron_bed.py M tools/filters/ucsc_gene_table_to_intervals.py M tools/genomespace/genomespace_importer.py M tools/maf/maf_by_block_number.py M tools/maf/maf_filter.py M tools/maf/maf_limit_size.py M tools/maf/maf_limit_to_species.py M tools/maf/maf_reverse_complement.py M tools/maf/maf_stats.py M tools/maf/maf_thread_for_species.py M tools/maf/maf_to_bed.py M tools/maf/vcf_to_maf_customtrack.py M tools/metag_tools/blat_wrapper.py M tools/metag_tools/shrimp_color_wrapper.py M tools/metag_tools/shrimp_wrapper.py M tools/next_gen_conversion/solid2fastq.py M tools/plotting/bar_chart.py M tools/solid_tools/maq_cs_wrapper.py M tools/solid_tools/solid_qual_stats.py M tools/sr_mapping/bfast_wrapper.py M tools/stats/aggregate_scores_in_intervals.py M tools/stats/filtering.py M tools/stats/grouping.py M tools/stats/gsummary.py M tox.ini Log Message: ----------- Merge remote-tracking branch 'upstream/dev' into es6imports Commit: cb4f74b9f2bea6356405adf94093c01d5b726fd1 https://github.com/galaxyproject/galaxy/commit/cb4f74b9f2bea6356405adf94093… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-31 (Tue, 31 Oct 2017) Changed paths: M client/galaxy/scripts/mvc/grid/grid-view.js M static/maps/mvc/grid/grid-view.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/grid/grid-view.js Log Message: ----------- Fix a bad merge of grid-view. Commit: 2562e73715dbd7ad46c7ce7f3ba460f52118043a https://github.com/galaxyproject/galaxy/commit/2562e73715dbd7ad46c7ce7f3ba4… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-31 (Tue, 31 Oct 2017) Changed paths: M templates/webapps/galaxy/workflow/editor.mako Log Message: ----------- Fix workflow default entrypoint. Commit: 8eee8dadf54da37cb5d5d8bdbecc58d960ede31e https://github.com/galaxyproject/galaxy/commit/8eee8dadf54da37cb5d5d8bdbecc… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-31 (Tue, 31 Oct 2017) Changed paths: M client/galaxy/scripts/galaxy.pages.js M static/maps/galaxy.pages.js.map M static/scripts/galaxy.pages.js M templates/webapps/galaxy/page/editor.mako Log Message: ----------- Fix galaxy page editor creation; onloads. Commit: 2f7de58d29dbfc6d8d321faefa45573aacddaf0d https://github.com/galaxyproject/galaxy/commit/2f7de58d29dbfc6d8d321faefa45… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-10-31 (Tue, 31 Oct 2017) Changed paths: M client/galaxy/scripts/galaxy.pages.js M static/maps/galaxy.pages.js.map M static/scripts/galaxy.pages.js M templates/webapps/galaxy/page/editor.mako Log Message: ----------- Roll page editor dependencies into javascript. Commit: 9a30b5a83ad1670f5b8a70ca34dcad1bd9554dd0 https://github.com/galaxyproject/galaxy/commit/9a30b5a83ad1670f5b8a70ca34dc… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-01 (Wed, 01 Nov 2017) Changed paths: M templates/webapps/galaxy/history/view_multiple.mako Log Message: ----------- Swap multiview to use default exports. Commit: 6b6ec1663eea403c2e80c66d08a9b0b5351061cc https://github.com/galaxyproject/galaxy/commit/6b6ec1663eea403c2e80c66d08a9… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-01 (Wed, 01 Nov 2017) Changed paths: M templates/webapps/galaxy/dataset/display.mako M templates/webapps/galaxy/dataset/tabular_chunked.mako M templates/webapps/galaxy/galaxy.masthead.mako M templates/webapps/galaxy/history/display_structured.mako M templates/webapps/galaxy/visualization/display.mako M templates/webapps/galaxy/visualization/phyloviz.mako M templates/webapps/galaxy/visualization/sweepster.mako Log Message: ----------- More require/default fixes. Commit: 9297da0ee2a26970b15e1f291d47de4176d852a3 https://github.com/galaxyproject/galaxy/commit/9297da0ee2a26970b15e1f291d47… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-01 (Wed, 01 Nov 2017) Changed paths: M client/galaxy/scripts/galaxy.pages.js M static/maps/galaxy.pages.js.map M static/scripts/galaxy.pages.js M templates/webapps/galaxy/history/embed.mako Log Message: ----------- Refactoring of GridView usage in galaxy.pages; fix dependencies. Commit: adaa6e28fcabb48889b7092609a872104e4ac5fe https://github.com/galaxyproject/galaxy/commit/adaa6e28fcabb48889b7092609a8… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-01 (Wed, 01 Nov 2017) Changed paths: M client/gulpfile.js M client/package.json M client/yarn.lock Log Message: ----------- Add GXY_NOPACK option to beautify packed code for easier \(temporary\) debugging. Commit: 770bedf3669841d6c4b44270cf60072523f3dc77 https://github.com/galaxyproject/galaxy/commit/770bedf3669841d6c4b44270cf60… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-01 (Wed, 01 Nov 2017) Changed paths: M templates/webapps/galaxy/history/display.mako M templates/webapps/galaxy/history/embed.mako M templates/webapps/galaxy/history/view.mako Log Message: ----------- More embedded/weirdly displayed history view dependency fixes. Commit: 6d59bb6d11bda32230f826beb4f73bccca7b7617 https://github.com/galaxyproject/galaxy/commit/6d59bb6d11bda32230f826beb4f7… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-01 (Wed, 01 Nov 2017) Changed paths: M templates/webapps/galaxy/history/citations.mako Log Message: ----------- Citation view fixes. Commit: de27f9653a4f2f13494fd2e49c02f61b9e25454b https://github.com/galaxyproject/galaxy/commit/de27f9653a4f2f13494fd2e49c02… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-01 (Wed, 01 Nov 2017) Changed paths: M templates/webapps/galaxy/history/view.mako Log Message: ----------- More wonky usage in the old history view mako that needed updating. Commit: 5c9ef6149b8ae36879a5fc39663222f0db9fe823 https://github.com/galaxyproject/galaxy/commit/5c9ef6149b8ae36879a5fc396632… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-01 (Wed, 01 Nov 2017) Changed paths: M templates/webapps/tool_shed/group/index.mako Log Message: ----------- One toolshed fix Commit: 5803e6f7d5d006337c1d2b8db019ce4c95f23d9c https://github.com/galaxyproject/galaxy/commit/5803e6f7d5d006337c1d2b8db019… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-01 (Wed, 01 Nov 2017) Changed paths: M client/galaxy/scripts/galaxy.js M client/galaxy/scripts/galaxy.pages.js M client/galaxy/scripts/layout/generic-nav-view.js M client/galaxy/scripts/layout/page.js M client/galaxy/scripts/layout/panel.js M client/galaxy/scripts/layout/scratchbook.js M client/galaxy/scripts/mvc/base-mvc.js M client/galaxy/scripts/mvc/collection/collection-li.js M client/galaxy/scripts/mvc/collection/collection-view-edit.js M client/galaxy/scripts/mvc/collection/list-collection-creator.js M client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js M client/galaxy/scripts/mvc/collection/pair-collection-creator.js M client/galaxy/scripts/mvc/dataset/data.js M client/galaxy/scripts/mvc/dataset/dataset-choice.js M client/galaxy/scripts/mvc/dataset/dataset-error.js M client/galaxy/scripts/mvc/dataset/dataset-li-edit.js M client/galaxy/scripts/mvc/dataset/dataset-li.js M client/galaxy/scripts/mvc/dataset/dataset-model.js M client/galaxy/scripts/mvc/grid/grid-model.js M client/galaxy/scripts/mvc/grid/grid-view.js M client/galaxy/scripts/mvc/history/copy-dialog.js M client/galaxy/scripts/mvc/history/hda-model.js M client/galaxy/scripts/mvc/history/hdca-li-edit.js M client/galaxy/scripts/mvc/history/hdca-model.js M client/galaxy/scripts/mvc/history/history-contents.js M client/galaxy/scripts/mvc/history/history-model.js M client/galaxy/scripts/mvc/history/history-structure-view.js M client/galaxy/scripts/mvc/history/history-view-edit.js M client/galaxy/scripts/mvc/history/job-dag.js M client/galaxy/scripts/mvc/history/multi-panel.js M client/galaxy/scripts/mvc/history/options-menu.js M client/galaxy/scripts/mvc/job/job-li.js M client/galaxy/scripts/mvc/job/job-model.js M client/galaxy/scripts/mvc/job/job-params.js M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js M client/galaxy/scripts/mvc/list/list-item.js M client/galaxy/scripts/mvc/list/list-view.js M client/galaxy/scripts/mvc/tool/tool-form-composite.js M client/galaxy/scripts/mvc/tool/tools.js M client/galaxy/scripts/mvc/toolshed/workflows-view.js M client/galaxy/scripts/mvc/ui/popup-menu.js M client/galaxy/scripts/mvc/ui/ui-popover.js M client/galaxy/scripts/mvc/user/user-model.js M client/galaxy/scripts/mvc/user/user-quotameter.js M client/galaxy/scripts/mvc/workflow/workflow-canvas.js M client/galaxy/scripts/mvc/workflow/workflow-connector.js M client/galaxy/scripts/mvc/workflow/workflow-manager.js M client/galaxy/scripts/mvc/workflow/workflow-view-terminals.js M client/galaxy/scripts/mvc/workflow/workflow-view.js M client/galaxy/scripts/onload.js M client/galaxy/scripts/reports_webapp/run_stats.js M client/galaxy/scripts/ui/editable-text.js M client/galaxy/scripts/ui/filter-control.js M client/galaxy/scripts/ui/hoverhighlight.js M client/galaxy/scripts/ui/loading-indicator.js M client/galaxy/scripts/ui/mode-button.js M client/galaxy/scripts/ui/pagination.js M client/galaxy/scripts/ui/peek-column-selector.js M client/galaxy/scripts/ui/popupmenu.js M client/galaxy/scripts/ui/scroll-panel.js M client/galaxy/scripts/ui/search-input.js M client/galaxy/scripts/utils/ajax-queue.js M client/galaxy/scripts/utils/async-save-text.js M client/galaxy/scripts/utils/config.js M client/galaxy/scripts/utils/graph.js M client/galaxy/scripts/utils/metrics-logger.js M client/galaxy/scripts/utils/natural-sort.js M client/galaxy/scripts/utils/query-string-parsing.js M client/galaxy/scripts/utils/utils.js M client/galaxy/scripts/viz/bbi-data-manager.js M client/galaxy/scripts/viz/circster.js M client/galaxy/scripts/viz/phyloviz.js M client/galaxy/scripts/viz/sweepster.js M client/galaxy/scripts/viz/trackster.js M client/galaxy/scripts/viz/trackster/filters.js M client/galaxy/scripts/viz/trackster/painters.js M client/galaxy/scripts/viz/trackster/slotting.js M client/galaxy/scripts/viz/trackster/tracks.js M client/galaxy/scripts/viz/trackster/util.js M client/galaxy/scripts/viz/visualization.js M client/galaxy/scripts/viz/viz_views.js M static/maps/galaxy.js.map M static/maps/galaxy.pages.js.map M static/maps/layout/generic-nav-view.js.map M static/maps/layout/page.js.map M static/maps/layout/panel.js.map M static/maps/layout/scratchbook.js.map M static/maps/mvc/base-mvc.js.map M static/maps/mvc/collection/collection-li.js.map M static/maps/mvc/collection/collection-view-edit.js.map M static/maps/mvc/collection/list-collection-creator.js.map M static/maps/mvc/collection/list-of-pairs-collection-creator.js.map M static/maps/mvc/collection/pair-collection-creator.js.map M static/maps/mvc/dataset/data.js.map M static/maps/mvc/dataset/dataset-choice.js.map M static/maps/mvc/dataset/dataset-error.js.map M static/maps/mvc/dataset/dataset-li-edit.js.map M static/maps/mvc/dataset/dataset-li.js.map M static/maps/mvc/dataset/dataset-model.js.map M static/maps/mvc/grid/grid-model.js.map M static/maps/mvc/grid/grid-view.js.map M static/maps/mvc/history/copy-dialog.js.map M static/maps/mvc/history/hda-model.js.map M static/maps/mvc/history/hdca-li-edit.js.map M static/maps/mvc/history/hdca-model.js.map M static/maps/mvc/history/history-contents.js.map M static/maps/mvc/history/history-model.js.map M static/maps/mvc/history/history-structure-view.js.map M static/maps/mvc/history/history-view-edit.js.map M static/maps/mvc/history/job-dag.js.map M static/maps/mvc/history/multi-panel.js.map M static/maps/mvc/history/options-menu.js.map M static/maps/mvc/job/job-li.js.map M static/maps/mvc/job/job-model.js.map M static/maps/mvc/job/job-params.js.map M static/maps/mvc/library/library-foldertoolbar-view.js.map M static/maps/mvc/list/list-item.js.map M static/maps/mvc/list/list-view.js.map M static/maps/mvc/tool/tool-form-composite.js.map M static/maps/mvc/tool/tools.js.map M static/maps/mvc/toolshed/workflows-view.js.map M static/maps/mvc/ui/popup-menu.js.map M static/maps/mvc/ui/ui-popover.js.map M static/maps/mvc/user/user-model.js.map M static/maps/mvc/user/user-quotameter.js.map M static/maps/mvc/workflow/workflow-canvas.js.map M static/maps/mvc/workflow/workflow-connector.js.map M static/maps/mvc/workflow/workflow-manager.js.map M static/maps/mvc/workflow/workflow-view-terminals.js.map M static/maps/mvc/workflow/workflow-view.js.map M static/maps/onload.js.map M static/maps/ui/editable-text.js.map M static/maps/ui/filter-control.js.map M static/maps/ui/hoverhighlight.js.map M static/maps/ui/loading-indicator.js.map M static/maps/ui/mode-button.js.map M static/maps/ui/pagination.js.map M static/maps/ui/peek-column-selector.js.map M static/maps/ui/popupmenu.js.map M static/maps/ui/scroll-panel.js.map M static/maps/ui/search-input.js.map M static/maps/utils/ajax-queue.js.map M static/maps/utils/async-save-text.js.map M static/maps/utils/config.js.map M static/maps/utils/graph.js.map M static/maps/utils/metrics-logger.js.map M static/maps/utils/natural-sort.js.map M static/maps/utils/query-string-parsing.js.map M static/maps/utils/utils.js.map M static/maps/viz/bbi-data-manager.js.map M static/maps/viz/circster.js.map M static/maps/viz/phyloviz.js.map M static/maps/viz/sweepster.js.map M static/maps/viz/trackster.js.map M static/maps/viz/trackster/filters.js.map M static/maps/viz/trackster/painters.js.map M static/maps/viz/trackster/slotting.js.map M static/maps/viz/trackster/tracks.js.map M static/maps/viz/trackster/util.js.map M static/maps/viz/visualization.js.map M static/maps/viz/viz_views.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Explicit vars from multi-declarations. Commit: 01cbe015603eecf2f326c8c60ab75e8f388887d0 https://github.com/galaxyproject/galaxy/commit/01cbe015603eecf2f326c8c60ab7… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-01 (Wed, 01 Nov 2017) Changed paths: M client/galaxy/scripts/admin.toolshed.js M client/galaxy/scripts/apps/admin.js M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/apps/login.js M client/galaxy/scripts/apps/panels/admin-panel.js M client/galaxy/scripts/apps/panels/history-panel.js M client/galaxy/scripts/apps/panels/tool-panel.js M client/galaxy/scripts/galaxy.interactive_environments.js M client/galaxy/scripts/galaxy.js M client/galaxy/scripts/galaxy.library.js M client/galaxy/scripts/galaxy.pages.js M client/galaxy/scripts/layout/generic-nav-view.js M client/galaxy/scripts/layout/masthead.js M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/layout/modal.js M client/galaxy/scripts/layout/page.js M client/galaxy/scripts/layout/panel.js M client/galaxy/scripts/layout/scratchbook.js M client/galaxy/scripts/mvc/annotation.js M client/galaxy/scripts/mvc/base-mvc.js M client/galaxy/scripts/mvc/base/controlled-fetch-collection.js M client/galaxy/scripts/mvc/citation/citation-model.js M client/galaxy/scripts/mvc/collection/base-creator.js M client/galaxy/scripts/mvc/collection/collection-li-edit.js M client/galaxy/scripts/mvc/collection/collection-li.js M client/galaxy/scripts/mvc/collection/collection-model.js M client/galaxy/scripts/mvc/collection/collection-view-edit.js M client/galaxy/scripts/mvc/collection/collection-view.js M client/galaxy/scripts/mvc/collection/list-collection-creator.js M client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js M client/galaxy/scripts/mvc/collection/pair-collection-creator.js M client/galaxy/scripts/mvc/dataset/data.js M client/galaxy/scripts/mvc/dataset/dataset-choice.js M client/galaxy/scripts/mvc/dataset/dataset-edit-attributes.js M client/galaxy/scripts/mvc/dataset/dataset-error.js M client/galaxy/scripts/mvc/dataset/dataset-li-edit.js M client/galaxy/scripts/mvc/dataset/dataset-li.js M client/galaxy/scripts/mvc/dataset/dataset-model.js M client/galaxy/scripts/mvc/form/form-data.js M client/galaxy/scripts/mvc/form/form-input.js M client/galaxy/scripts/mvc/form/form-parameters.js M client/galaxy/scripts/mvc/form/form-repeat.js M client/galaxy/scripts/mvc/form/form-section.js M client/galaxy/scripts/mvc/form/form-view.js M client/galaxy/scripts/mvc/form/form-wrapper.js M client/galaxy/scripts/mvc/grid/grid-model.js M client/galaxy/scripts/mvc/grid/grid-shared.js M client/galaxy/scripts/mvc/grid/grid-view.js M client/galaxy/scripts/mvc/history/copy-dialog.js M client/galaxy/scripts/mvc/history/hda-li-edit.js M client/galaxy/scripts/mvc/history/hda-li.js M client/galaxy/scripts/mvc/history/hdca-li.js M client/galaxy/scripts/mvc/history/history-contents.js M client/galaxy/scripts/mvc/history/history-list.js M client/galaxy/scripts/mvc/history/history-model.js M client/galaxy/scripts/mvc/history/history-structure-view.js M client/galaxy/scripts/mvc/history/history-view-edit-current.js M client/galaxy/scripts/mvc/history/history-view-edit.js M client/galaxy/scripts/mvc/history/history-view.js M client/galaxy/scripts/mvc/history/job-dag.js M client/galaxy/scripts/mvc/history/multi-panel.js M client/galaxy/scripts/mvc/history/options-menu.js M client/galaxy/scripts/mvc/job/job-li.js M client/galaxy/scripts/mvc/job/job-model.js M client/galaxy/scripts/mvc/lazy/lazy-limited.js M client/galaxy/scripts/mvc/library/library-dataset-view.js M client/galaxy/scripts/mvc/library/library-folder-view.js M client/galaxy/scripts/mvc/library/library-folderlist-view.js M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js M client/galaxy/scripts/mvc/library/library-library-view.js M client/galaxy/scripts/mvc/library/library-librarylist-view.js M client/galaxy/scripts/mvc/library/library-model.js M client/galaxy/scripts/mvc/library/library-util.js M client/galaxy/scripts/mvc/list/list-item.js M client/galaxy/scripts/mvc/list/list-view.js M client/galaxy/scripts/mvc/tag.js M client/galaxy/scripts/mvc/tool/tool-form-base.js M client/galaxy/scripts/mvc/tool/tool-form-composite.js M client/galaxy/scripts/mvc/tool/tool-form.js M client/galaxy/scripts/mvc/tool/tool-genomespace.js M client/galaxy/scripts/mvc/tool/tools.js M client/galaxy/scripts/mvc/toolshed/categories-view.js M client/galaxy/scripts/mvc/toolshed/repo-status-view.js M client/galaxy/scripts/mvc/toolshed/repositories-view.js M client/galaxy/scripts/mvc/toolshed/repository-queue-view.js M client/galaxy/scripts/mvc/toolshed/repository-view.js M client/galaxy/scripts/mvc/toolshed/toolshed-model.js M client/galaxy/scripts/mvc/toolshed/util.js M client/galaxy/scripts/mvc/toolshed/workflows-view.js M client/galaxy/scripts/mvc/tours.js M client/galaxy/scripts/mvc/ui/error-modal.js M client/galaxy/scripts/mvc/ui/icon-button.js M client/galaxy/scripts/mvc/ui/popup-menu.js M client/galaxy/scripts/mvc/ui/ui-buttons.js M client/galaxy/scripts/mvc/ui/ui-color-picker.js M client/galaxy/scripts/mvc/ui/ui-drilldown.js M client/galaxy/scripts/mvc/ui/ui-frames.js M client/galaxy/scripts/mvc/ui/ui-list.js M client/galaxy/scripts/mvc/ui/ui-misc.js M client/galaxy/scripts/mvc/ui/ui-modal.js M client/galaxy/scripts/mvc/ui/ui-options.js M client/galaxy/scripts/mvc/ui/ui-popover.js M client/galaxy/scripts/mvc/ui/ui-portlet.js M client/galaxy/scripts/mvc/ui/ui-select-content.js M client/galaxy/scripts/mvc/ui/ui-select-default.js M client/galaxy/scripts/mvc/ui/ui-select-library.js M client/galaxy/scripts/mvc/ui/ui-select.js M client/galaxy/scripts/mvc/ui/ui-slider.js M client/galaxy/scripts/mvc/ui/ui-tabs.js M client/galaxy/scripts/mvc/ui/ui-thumbnails.js M client/galaxy/scripts/mvc/upload/collection/collection-row.js M client/galaxy/scripts/mvc/upload/collection/collection-view.js M 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static/maps/galaxy.pages.js.map M static/maps/layout/generic-nav-view.js.map M static/maps/layout/masthead.js.map M static/maps/layout/menu.js.map M static/maps/layout/modal.js.map M static/maps/layout/page.js.map M static/maps/layout/panel.js.map M static/maps/layout/scratchbook.js.map M static/maps/mvc/annotation.js.map M static/maps/mvc/base-mvc.js.map M static/maps/mvc/base/controlled-fetch-collection.js.map M static/maps/mvc/citation/citation-model.js.map M static/maps/mvc/collection/base-creator.js.map M static/maps/mvc/collection/collection-li-edit.js.map M static/maps/mvc/collection/collection-li.js.map M static/maps/mvc/collection/collection-model.js.map M static/maps/mvc/collection/collection-view-edit.js.map M static/maps/mvc/collection/collection-view.js.map M static/maps/mvc/collection/list-collection-creator.js.map M static/maps/mvc/collection/list-of-pairs-collection-creator.js.map M static/maps/mvc/collection/pair-collection-creator.js.map M 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static/maps/mvc/history/history-list.js.map M static/maps/mvc/history/history-model.js.map M static/maps/mvc/history/history-structure-view.js.map M static/maps/mvc/history/history-view-edit-current.js.map M static/maps/mvc/history/history-view-edit.js.map M static/maps/mvc/history/history-view.js.map M static/maps/mvc/history/job-dag.js.map M static/maps/mvc/history/multi-panel.js.map M static/maps/mvc/history/options-menu.js.map M static/maps/mvc/job/job-li.js.map M static/maps/mvc/job/job-model.js.map M static/maps/mvc/lazy/lazy-limited.js.map M static/maps/mvc/library/library-dataset-view.js.map M static/maps/mvc/library/library-folder-view.js.map M static/maps/mvc/library/library-folderlist-view.js.map M static/maps/mvc/library/library-foldertoolbar-view.js.map M static/maps/mvc/library/library-library-view.js.map M static/maps/mvc/library/library-librarylist-view.js.map M static/maps/mvc/library/library-model.js.map M static/maps/mvc/library/library-util.js.map M static/maps/mvc/list/list-item.js.map M static/maps/mvc/list/list-view.js.map M static/maps/mvc/tag.js.map M static/maps/mvc/tool/tool-form-base.js.map M static/maps/mvc/tool/tool-form-composite.js.map M static/maps/mvc/tool/tool-form.js.map M static/maps/mvc/tool/tool-genomespace.js.map M static/maps/mvc/tool/tools.js.map M static/maps/mvc/toolshed/categories-view.js.map M static/maps/mvc/toolshed/repo-status-view.js.map M static/maps/mvc/toolshed/repositories-view.js.map M static/maps/mvc/toolshed/repository-queue-view.js.map M static/maps/mvc/toolshed/repository-view.js.map M static/maps/mvc/toolshed/toolshed-model.js.map M static/maps/mvc/toolshed/util.js.map M static/maps/mvc/toolshed/workflows-view.js.map M static/maps/mvc/tours.js.map M static/maps/mvc/ui/error-modal.js.map M static/maps/mvc/ui/icon-button.js.map M static/maps/mvc/ui/popup-menu.js.map M static/maps/mvc/ui/ui-buttons.js.map M static/maps/mvc/ui/ui-color-picker.js.map M static/maps/mvc/ui/ui-drilldown.js.map M static/maps/mvc/ui/ui-frames.js.map M static/maps/mvc/ui/ui-list.js.map M static/maps/mvc/ui/ui-misc.js.map M static/maps/mvc/ui/ui-modal.js.map M static/maps/mvc/ui/ui-options.js.map M static/maps/mvc/ui/ui-popover.js.map M static/maps/mvc/ui/ui-portlet.js.map M static/maps/mvc/ui/ui-select-content.js.map M static/maps/mvc/ui/ui-select-default.js.map M static/maps/mvc/ui/ui-select-library.js.map M static/maps/mvc/ui/ui-select.js.map M static/maps/mvc/ui/ui-slider.js.map M static/maps/mvc/ui/ui-tabs.js.map M static/maps/mvc/ui/ui-thumbnails.js.map M static/maps/mvc/upload/collection/collection-row.js.map M static/maps/mvc/upload/collection/collection-view.js.map M static/maps/mvc/upload/composite/composite-row.js.map M static/maps/mvc/upload/composite/composite-view.js.map M static/maps/mvc/upload/default/default-row.js.map M static/maps/mvc/upload/default/default-view.js.map M static/maps/mvc/upload/upload-button.js.map M static/maps/mvc/upload/upload-ftp.js.map M static/maps/mvc/upload/upload-settings.js.map M static/maps/mvc/upload/upload-view.js.map M static/maps/mvc/user/user-custom-builds.js.map M static/maps/mvc/user/user-model.js.map M static/maps/mvc/user/user-preferences.js.map M static/maps/mvc/visualization/visualization-model.js.map M static/maps/mvc/webhooks.js.map M static/maps/mvc/workflow/workflow-canvas.js.map M static/maps/mvc/workflow/workflow-connector.js.map M static/maps/mvc/workflow/workflow-forms.js.map M static/maps/mvc/workflow/workflow-manager.js.map M static/maps/mvc/workflow/workflow-node.js.map M static/maps/mvc/workflow/workflow-terminals.js.map M static/maps/mvc/workflow/workflow-view-data.js.map M static/maps/mvc/workflow/workflow-view-node.js.map M static/maps/mvc/workflow/workflow-view-terminals.js.map M static/maps/mvc/workflow/workflow-view.js.map M static/maps/mvc/workflow/workflow.js.map M static/maps/onload.js.map M static/maps/polyfills.js.map M static/maps/ui/autocom_tagging.js.map M static/maps/ui/editable-text.js.map M static/maps/ui/fa-icon-button.js.map M static/maps/ui/filter-control.js.map M static/maps/ui/hoverhighlight.js.map M static/maps/ui/loading-indicator.js.map M static/maps/ui/pagination.js.map M static/maps/ui/peek-column-selector.js.map M static/maps/ui/popupmenu.js.map M static/maps/ui/scroll-panel.js.map M static/maps/ui/search-input.js.map M static/maps/utils/add-logging.js.map M static/maps/utils/ajax-queue.js.map M static/maps/utils/async-save-text.js.map M static/maps/utils/config.js.map M static/maps/utils/deferred.js.map M static/maps/utils/graph.js.map M static/maps/utils/metrics-logger.js.map M static/maps/utils/query-string-parsing.js.map M static/maps/utils/uploadbox.js.map M static/maps/utils/utils.js.map M static/maps/viz/bbi-data-manager.js.map M static/maps/viz/circster.js.map M static/maps/viz/phyloviz.js.map M static/maps/viz/sweepster.js.map M static/maps/viz/trackster.js.map M static/maps/viz/trackster/filters.js.map M static/maps/viz/trackster/painters.js.map M static/maps/viz/trackster/tracks.js.map M static/maps/viz/trackster/util.js.map M static/maps/viz/visualization.js.map M static/maps/viz/viz_views.js.map M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/collection/list-of-pairs-collection-creator.js Log Message: ----------- Arrow functions for callbacks across the codebase Commit: d6d6f4c5955a7bd5f5d370bb11ddf035b9c50d52 https://github.com/galaxyproject/galaxy/commit/d6d6f4c5955a7bd5f5d370bb11dd… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-01 (Wed, 01 Nov 2017) Changed paths: M client/galaxy/scripts/apps/admin.js M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/apps/login.js M client/galaxy/scripts/apps/panels/admin-panel.js M client/galaxy/scripts/apps/panels/history-panel.js M client/galaxy/scripts/apps/panels/tool-panel.js M client/galaxy/scripts/galaxy.interactive_environments.js M client/galaxy/scripts/galaxy.js M client/galaxy/scripts/galaxy.library.js M client/galaxy/scripts/galaxy.pages.js M client/galaxy/scripts/layout/generic-nav-view.js M client/galaxy/scripts/layout/masthead.js M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/layout/modal.js M client/galaxy/scripts/layout/page.js M client/galaxy/scripts/layout/panel.js M client/galaxy/scripts/layout/scratchbook.js M client/galaxy/scripts/mvc/annotation.js M client/galaxy/scripts/mvc/base-mvc.js M client/galaxy/scripts/mvc/base/controlled-fetch-collection.js M client/galaxy/scripts/mvc/citation/citation-model.js M client/galaxy/scripts/mvc/citation/citation-view.js M client/galaxy/scripts/mvc/collection/base-creator.js M client/galaxy/scripts/mvc/collection/collection-li-edit.js M client/galaxy/scripts/mvc/collection/collection-li.js M client/galaxy/scripts/mvc/collection/collection-model.js M client/galaxy/scripts/mvc/collection/collection-view-edit.js M client/galaxy/scripts/mvc/collection/collection-view.js M client/galaxy/scripts/mvc/collection/list-collection-creator.js M client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js M client/galaxy/scripts/mvc/dataset/data.js M client/galaxy/scripts/mvc/dataset/dataset-choice.js M client/galaxy/scripts/mvc/dataset/dataset-edit-attributes.js M client/galaxy/scripts/mvc/dataset/dataset-error.js M client/galaxy/scripts/mvc/dataset/dataset-li-edit.js M client/galaxy/scripts/mvc/dataset/dataset-li.js M client/galaxy/scripts/mvc/dataset/dataset-list.js M client/galaxy/scripts/mvc/dataset/dataset-model.js M client/galaxy/scripts/mvc/form/form-data.js M client/galaxy/scripts/mvc/form/form-input.js M client/galaxy/scripts/mvc/form/form-parameters.js M client/galaxy/scripts/mvc/form/form-repeat.js M client/galaxy/scripts/mvc/form/form-section.js M client/galaxy/scripts/mvc/form/form-view.js M client/galaxy/scripts/mvc/form/form-wrapper.js M client/galaxy/scripts/mvc/grid/grid-model.js M client/galaxy/scripts/mvc/grid/grid-shared.js M client/galaxy/scripts/mvc/grid/grid-template.js M client/galaxy/scripts/mvc/grid/grid-view.js M client/galaxy/scripts/mvc/history/copy-dialog.js M client/galaxy/scripts/mvc/history/hda-li-edit.js M client/galaxy/scripts/mvc/history/hda-li.js M client/galaxy/scripts/mvc/history/hdca-li-edit.js M client/galaxy/scripts/mvc/history/hdca-li.js M client/galaxy/scripts/mvc/history/hdca-model.js M client/galaxy/scripts/mvc/history/history-content-model.js M client/galaxy/scripts/mvc/history/history-contents.js M client/galaxy/scripts/mvc/history/history-list.js M client/galaxy/scripts/mvc/history/history-model.js M client/galaxy/scripts/mvc/history/history-preferences.js M client/galaxy/scripts/mvc/history/history-structure-view.js M client/galaxy/scripts/mvc/history/history-view-annotated.js M client/galaxy/scripts/mvc/history/history-view-edit-current.js M client/galaxy/scripts/mvc/history/history-view-edit.js M client/galaxy/scripts/mvc/history/history-view.js M client/galaxy/scripts/mvc/history/multi-panel.js M client/galaxy/scripts/mvc/history/options-menu.js M client/galaxy/scripts/mvc/job/job-li.js M client/galaxy/scripts/mvc/job/job-model.js M client/galaxy/scripts/mvc/job/job-params.js M client/galaxy/scripts/mvc/lazy/lazy-limited.js M client/galaxy/scripts/mvc/library/library-dataset-view.js M client/galaxy/scripts/mvc/library/library-folder-view.js M client/galaxy/scripts/mvc/library/library-folderlist-view.js M client/galaxy/scripts/mvc/library/library-folderrow-view.js M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js M client/galaxy/scripts/mvc/library/library-library-view.js M client/galaxy/scripts/mvc/library/library-librarylist-view.js M client/galaxy/scripts/mvc/library/library-libraryrow-view.js M client/galaxy/scripts/mvc/library/library-model.js M client/galaxy/scripts/mvc/list/list-item.js M client/galaxy/scripts/mvc/list/list-view.js M client/galaxy/scripts/mvc/tag.js M client/galaxy/scripts/mvc/tool/tool-form-base.js M client/galaxy/scripts/mvc/tool/tool-form-composite.js M client/galaxy/scripts/mvc/tool/tool-form.js M client/galaxy/scripts/mvc/tool/tool-genomespace.js M client/galaxy/scripts/mvc/tool/tools.js M client/galaxy/scripts/mvc/toolshed/categories-view.js M client/galaxy/scripts/mvc/toolshed/repo-status-view.js M client/galaxy/scripts/mvc/toolshed/repositories-view.js M client/galaxy/scripts/mvc/toolshed/repository-queue-view.js M client/galaxy/scripts/mvc/toolshed/repository-view.js M client/galaxy/scripts/mvc/toolshed/toolshed-model.js M client/galaxy/scripts/mvc/toolshed/util.js M client/galaxy/scripts/mvc/toolshed/workflows-view.js M client/galaxy/scripts/mvc/tours.js M client/galaxy/scripts/mvc/ui/error-modal.js M client/galaxy/scripts/mvc/ui/icon-button.js M client/galaxy/scripts/mvc/ui/popup-menu.js M client/galaxy/scripts/mvc/ui/ui-buttons.js M client/galaxy/scripts/mvc/ui/ui-color-picker.js M client/galaxy/scripts/mvc/ui/ui-drilldown.js M client/galaxy/scripts/mvc/ui/ui-frames.js M client/galaxy/scripts/mvc/ui/ui-list.js M client/galaxy/scripts/mvc/ui/ui-misc.js M client/galaxy/scripts/mvc/ui/ui-modal.js M client/galaxy/scripts/mvc/ui/ui-options.js M client/galaxy/scripts/mvc/ui/ui-popover.js M client/galaxy/scripts/mvc/ui/ui-portlet.js M client/galaxy/scripts/mvc/ui/ui-select-content.js M client/galaxy/scripts/mvc/ui/ui-select-default.js M client/galaxy/scripts/mvc/ui/ui-select-ftp.js M client/galaxy/scripts/mvc/ui/ui-select-genomespace.js M client/galaxy/scripts/mvc/ui/ui-select-library.js M client/galaxy/scripts/mvc/ui/ui-select.js M client/galaxy/scripts/mvc/ui/ui-table.js M client/galaxy/scripts/mvc/ui/ui-tabs.js M client/galaxy/scripts/mvc/ui/ui-thumbnails.js M client/galaxy/scripts/mvc/upload/collection/collection-row.js M client/galaxy/scripts/mvc/upload/collection/collection-view.js M client/galaxy/scripts/mvc/upload/composite/composite-row.js M client/galaxy/scripts/mvc/upload/default/default-row.js M client/galaxy/scripts/mvc/upload/default/default-view.js M client/galaxy/scripts/mvc/upload/upload-button.js M client/galaxy/scripts/mvc/upload/upload-extension.js M client/galaxy/scripts/mvc/upload/upload-ftp.js M client/galaxy/scripts/mvc/upload/upload-settings.js M client/galaxy/scripts/mvc/upload/upload-view.js M client/galaxy/scripts/mvc/user/user-custom-builds.js M client/galaxy/scripts/mvc/user/user-model.js M client/galaxy/scripts/mvc/user/user-preferences.js M client/galaxy/scripts/mvc/user/user-quotameter.js M client/galaxy/scripts/mvc/visualization/visualization-model.js M client/galaxy/scripts/mvc/webhooks.js M client/galaxy/scripts/mvc/workflow/workflow-canvas.js M client/galaxy/scripts/mvc/workflow/workflow-connector.js M client/galaxy/scripts/mvc/workflow/workflow-forms.js M client/galaxy/scripts/mvc/workflow/workflow-manager.js M client/galaxy/scripts/mvc/workflow/workflow-model.js M client/galaxy/scripts/mvc/workflow/workflow-node.js M client/galaxy/scripts/mvc/workflow/workflow-terminals.js M client/galaxy/scripts/mvc/workflow/workflow-view-data.js M client/galaxy/scripts/mvc/workflow/workflow-view.js M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/scripts/onload.js M client/galaxy/scripts/polyfills.js M client/galaxy/scripts/reports_webapp/run_stats.js M client/galaxy/scripts/ui/autocom_tagging.js M client/galaxy/scripts/ui/fa-icon-button.js M client/galaxy/scripts/ui/filter-control.js M client/galaxy/scripts/ui/mode-button.js M client/galaxy/scripts/ui/peek-column-selector.js M client/galaxy/scripts/ui/popupmenu.js M client/galaxy/scripts/ui/scroll-panel.js M client/galaxy/scripts/utils/ajax-queue.js M client/galaxy/scripts/utils/async-save-text.js M client/galaxy/scripts/utils/config.js M client/galaxy/scripts/utils/deferred.js M client/galaxy/scripts/utils/graph.js M client/galaxy/scripts/utils/metrics-logger.js M client/galaxy/scripts/utils/natural-sort.js M client/galaxy/scripts/utils/query-string-parsing.js M client/galaxy/scripts/utils/uploadbox.js M client/galaxy/scripts/utils/utils.js M client/galaxy/scripts/viz/bbi-data-manager.js M client/galaxy/scripts/viz/circster.js M client/galaxy/scripts/viz/phyloviz.js M client/galaxy/scripts/viz/sweepster.js M client/galaxy/scripts/viz/trackster.js M client/galaxy/scripts/viz/trackster/filters.js M client/galaxy/scripts/viz/trackster/painters.js M client/galaxy/scripts/viz/trackster/tracks.js M client/galaxy/scripts/viz/trackster/util.js M client/galaxy/scripts/viz/visualization.js M client/galaxy/scripts/viz/viz_views.js M static/maps/galaxy.js.map M static/maps/galaxy.library.js.map M static/maps/galaxy.pages.js.map M static/maps/layout/generic-nav-view.js.map M static/maps/layout/masthead.js.map M static/maps/layout/menu.js.map M static/maps/layout/modal.js.map M static/maps/layout/page.js.map M static/maps/layout/panel.js.map M static/maps/layout/scratchbook.js.map M static/maps/mvc/annotation.js.map M static/maps/mvc/base-mvc.js.map M static/maps/mvc/base/controlled-fetch-collection.js.map M static/maps/mvc/citation/citation-model.js.map M static/maps/mvc/citation/citation-view.js.map M static/maps/mvc/collection/base-creator.js.map M static/maps/mvc/collection/collection-li-edit.js.map M static/maps/mvc/collection/collection-li.js.map M static/maps/mvc/collection/collection-model.js.map M static/maps/mvc/collection/collection-view-edit.js.map M static/maps/mvc/collection/collection-view.js.map M static/maps/mvc/collection/list-collection-creator.js.map M static/maps/mvc/collection/list-of-pairs-collection-creator.js.map M static/maps/mvc/dataset/data.js.map M static/maps/mvc/dataset/dataset-choice.js.map M static/maps/mvc/dataset/dataset-edit-attributes.js.map M static/maps/mvc/dataset/dataset-error.js.map M static/maps/mvc/dataset/dataset-li-edit.js.map M static/maps/mvc/dataset/dataset-li.js.map M static/maps/mvc/dataset/dataset-list.js.map M static/maps/mvc/dataset/dataset-model.js.map M static/maps/mvc/form/form-data.js.map M static/maps/mvc/form/form-input.js.map M static/maps/mvc/form/form-parameters.js.map M static/maps/mvc/form/form-repeat.js.map M static/maps/mvc/form/form-section.js.map M static/maps/mvc/form/form-view.js.map M static/maps/mvc/form/form-wrapper.js.map M static/maps/mvc/grid/grid-model.js.map M static/maps/mvc/grid/grid-shared.js.map M static/maps/mvc/grid/grid-template.js.map M static/maps/mvc/grid/grid-view.js.map M static/maps/mvc/history/copy-dialog.js.map M static/maps/mvc/history/hda-li-edit.js.map M static/maps/mvc/history/hda-li.js.map M static/maps/mvc/history/hdca-li-edit.js.map M static/maps/mvc/history/hdca-li.js.map M static/maps/mvc/history/hdca-model.js.map M static/maps/mvc/history/history-content-model.js.map M static/maps/mvc/history/history-contents.js.map M static/maps/mvc/history/history-list.js.map M static/maps/mvc/history/history-model.js.map M static/maps/mvc/history/history-preferences.js.map M static/maps/mvc/history/history-structure-view.js.map M static/maps/mvc/history/history-view-annotated.js.map M static/maps/mvc/history/history-view-edit-current.js.map M static/maps/mvc/history/history-view-edit.js.map M static/maps/mvc/history/history-view.js.map M static/maps/mvc/history/multi-panel.js.map M static/maps/mvc/history/options-menu.js.map M static/maps/mvc/job/job-li.js.map M static/maps/mvc/job/job-model.js.map M static/maps/mvc/job/job-params.js.map M static/maps/mvc/lazy/lazy-limited.js.map M static/maps/mvc/library/library-dataset-view.js.map M static/maps/mvc/library/library-folder-view.js.map M static/maps/mvc/library/library-folderlist-view.js.map M static/maps/mvc/library/library-folderrow-view.js.map M static/maps/mvc/library/library-foldertoolbar-view.js.map M static/maps/mvc/library/library-library-view.js.map M static/maps/mvc/library/library-librarylist-view.js.map M static/maps/mvc/library/library-libraryrow-view.js.map M static/maps/mvc/library/library-model.js.map M static/maps/mvc/list/list-item.js.map M static/maps/mvc/list/list-view.js.map M static/maps/mvc/tag.js.map M static/maps/mvc/tool/tool-form-base.js.map M static/maps/mvc/tool/tool-form-composite.js.map M static/maps/mvc/tool/tool-form.js.map M static/maps/mvc/tool/tool-genomespace.js.map M static/maps/mvc/tool/tools.js.map M static/maps/mvc/toolshed/categories-view.js.map M static/maps/mvc/toolshed/repo-status-view.js.map M static/maps/mvc/toolshed/repositories-view.js.map M static/maps/mvc/toolshed/repository-queue-view.js.map M static/maps/mvc/toolshed/repository-view.js.map M static/maps/mvc/toolshed/toolshed-model.js.map M static/maps/mvc/toolshed/util.js.map M static/maps/mvc/toolshed/workflows-view.js.map M static/maps/mvc/tours.js.map M static/maps/mvc/ui/error-modal.js.map M static/maps/mvc/ui/icon-button.js.map M static/maps/mvc/ui/popup-menu.js.map M static/maps/mvc/ui/ui-buttons.js.map M static/maps/mvc/ui/ui-color-picker.js.map M static/maps/mvc/ui/ui-drilldown.js.map M static/maps/mvc/ui/ui-frames.js.map M static/maps/mvc/ui/ui-list.js.map M static/maps/mvc/ui/ui-misc.js.map M static/maps/mvc/ui/ui-modal.js.map M static/maps/mvc/ui/ui-options.js.map M static/maps/mvc/ui/ui-popover.js.map M static/maps/mvc/ui/ui-portlet.js.map M static/maps/mvc/ui/ui-select-content.js.map M static/maps/mvc/ui/ui-select-default.js.map M static/maps/mvc/ui/ui-select-ftp.js.map M static/maps/mvc/ui/ui-select-genomespace.js.map M static/maps/mvc/ui/ui-select-library.js.map M static/maps/mvc/ui/ui-select.js.map M static/maps/mvc/ui/ui-table.js.map M static/maps/mvc/ui/ui-tabs.js.map M static/maps/mvc/ui/ui-thumbnails.js.map M static/maps/mvc/upload/collection/collection-row.js.map M static/maps/mvc/upload/collection/collection-view.js.map M static/maps/mvc/upload/composite/composite-row.js.map M static/maps/mvc/upload/default/default-row.js.map M static/maps/mvc/upload/default/default-view.js.map M static/maps/mvc/upload/upload-button.js.map M static/maps/mvc/upload/upload-extension.js.map M static/maps/mvc/upload/upload-ftp.js.map M static/maps/mvc/upload/upload-settings.js.map M static/maps/mvc/upload/upload-view.js.map M static/maps/mvc/user/user-custom-builds.js.map M static/maps/mvc/user/user-model.js.map M static/maps/mvc/user/user-preferences.js.map M static/maps/mvc/user/user-quotameter.js.map M static/maps/mvc/visualization/visualization-model.js.map M static/maps/mvc/webhooks.js.map M static/maps/mvc/workflow/workflow-canvas.js.map M static/maps/mvc/workflow/workflow-connector.js.map M static/maps/mvc/workflow/workflow-forms.js.map M static/maps/mvc/workflow/workflow-manager.js.map M static/maps/mvc/workflow/workflow-model.js.map M static/maps/mvc/workflow/workflow-node.js.map M static/maps/mvc/workflow/workflow-terminals.js.map M static/maps/mvc/workflow/workflow-view-data.js.map M static/maps/mvc/workflow/workflow-view.js.map M static/maps/mvc/workflow/workflow.js.map M static/maps/onload.js.map M static/maps/polyfills.js.map M static/maps/ui/autocom_tagging.js.map M static/maps/ui/fa-icon-button.js.map M static/maps/ui/filter-control.js.map M static/maps/ui/mode-button.js.map M static/maps/ui/peek-column-selector.js.map M static/maps/ui/popupmenu.js.map M static/maps/ui/scroll-panel.js.map M static/maps/utils/ajax-queue.js.map M static/maps/utils/async-save-text.js.map M static/maps/utils/config.js.map M static/maps/utils/deferred.js.map M static/maps/utils/graph.js.map M static/maps/utils/metrics-logger.js.map M static/maps/utils/natural-sort.js.map M static/maps/utils/query-string-parsing.js.map M static/maps/utils/uploadbox.js.map M static/maps/utils/utils.js.map M static/maps/viz/bbi-data-manager.js.map M static/maps/viz/circster.js.map M static/maps/viz/phyloviz.js.map M static/maps/viz/sweepster.js.map M static/maps/viz/trackster.js.map M static/maps/viz/trackster/filters.js.map M static/maps/viz/trackster/painters.js.map M static/maps/viz/trackster/tracks.js.map M static/maps/viz/trackster/util.js.map M static/maps/viz/visualization.js.map M static/maps/viz/viz_views.js.map M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/annotation.js M static/scripts/mvc/collection/collection-li-edit.js M static/scripts/mvc/collection/collection-li.js M static/scripts/mvc/dataset/dataset-li-edit.js M static/scripts/mvc/dataset/dataset-li.js M static/scripts/mvc/history/hda-li-edit.js M static/scripts/mvc/history/hda-li.js M static/scripts/mvc/history/hdca-li-edit.js M static/scripts/mvc/history/hdca-li.js M static/scripts/mvc/history/history-view.js M static/scripts/mvc/list/list-item.js M static/scripts/mvc/tag.js M static/scripts/mvc/ui/error-modal.js Log Message: ----------- Template literals instead of string construction across the app; this does not handle the loaders for *large* templates or where we were using a helper to construct large strings, yet. Commit: 842b1af60e232a8dcdcb3d08ff8d227d0d08c6da https://github.com/galaxyproject/galaxy/commit/842b1af60e232a8dcdcb3d08ff8d… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-11-01 (Wed, 01 Nov 2017) Changed paths: M Makefile Log Message: ----------- Add Makefile target for formatting client code. Commit: 6f2c899d766bdc85ed76ecc93a2f0384e4b05a71 https://github.com/galaxyproject/galaxy/commit/6f2c899d766bdc85ed76ecc93a2f… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-01 (Wed, 01 Nov 2017) Changed paths: A .ci/tox_envs/flake8/Pipfile A .ci/tox_envs/flake8/requirements.txt A .ci/tox_envs/flake8_imports/Pipfile A .ci/tox_envs/flake8_imports/requirements.txt A .ci/tox_envs/update.sh M Makefile M client/galaxy/scripts/mvc/collection/list-collection-creator.js M client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js M client/galaxy/style/less/upload.less M doc/source/releases/17.09_announce.rst M lib/galaxy/app.py M lib/galaxy/jobs/__init__.py M lib/galaxy/tools/parameters/grouping.py R lib/galaxy/webapps/galaxy/api/request_types.py R lib/galaxy/webapps/galaxy/api/requests.py R lib/galaxy/webapps/galaxy/api/samples.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/galaxy/config_watchers.py M run_tests.sh M scripts/bootstrap_history.py M static/maps/mvc/collection/list-collection-creator.js.map M static/maps/mvc/collection/list-of-pairs-collection-creator.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/collection/list-collection-creator.js M static/scripts/mvc/collection/list-of-pairs-collection-creator.js M static/style/blue/base.css M test/docker/base/Dockerfile M test/docker/base/run_test_wrapper.sh A test/docker/base/selenium/LICENSE A test/docker/base/selenium/README A test/docker/base/selenium/entry_point.sh A test/docker/base/selenium/functions.sh A test/docker/base/selenium/generate_config A test/docker/base/selenium/wrap_chrome_binary M tox.ini Log Message: ----------- Merge remote-tracking branch 'upstream/dev' into es6imports Commit: baf5352fff8831471256e367a8ee47e9c5b2a5f8 https://github.com/galaxyproject/galaxy/commit/baf5352fff8831471256e367a8ee… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-01 (Wed, 01 Nov 2017) Changed paths: M client/galaxy/scripts/apps/panels/admin-panel.js M client/galaxy/scripts/mvc/grid/grid-template.js M client/galaxy/scripts/mvc/tool/tool-form-base.js M lib/galaxy/webapps/galaxy/controllers/admin.py M static/maps/mvc/grid/grid-template.js.map M static/maps/mvc/tool/tool-form-base.js.map M static/scripts/bundled/admin.bundled.js M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/grid/grid-template.js M static/scripts/mvc/tool/tool-form-base.js R templates/admin/package_tool.mako R templates/admin/reload_tool.mako M templates/webapps/galaxy/admin/center.mako Log Message: ----------- Merge branch 'dev' into es6imports Commit: bbd5086116c7fe2f75eecd980f7ca34003a7cc3d https://github.com/galaxyproject/galaxy/commit/bbd5086116c7fe2f75eecd980f7c… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M test/qunit/test-app.js M test/qunit/tests/form_tests.js M test/qunit/tests/galaxy-app-base.js M test/qunit/tests/graph.js M test/qunit/tests/hda-base.js M test/qunit/tests/history_contents_model_tests.js M test/qunit/tests/job-dag.js M test/qunit/tests/list-of-pairs-collection-creator.js M test/qunit/tests/masthead_tests.js M test/qunit/tests/metrics-logger.js M test/qunit/tests/modal_tests.js M test/qunit/tests/page_tests.js M test/qunit/tests/popover_tests.js M test/qunit/tests/ui_tests.js M test/qunit/tests/upload_dialog_tests.js M test/qunit/tests/utils_test.js M test/qunit/tests/workflow_editor_tests.js Log Message: ----------- Fix unit test default members. Commit: 8643c3d7dd3f994b1c3806b4eca633afff45be50 https://github.com/galaxyproject/galaxy/commit/8643c3d7dd3f994b1c3806b4eca6… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M test/qunit/test-app.js M test/qunit/tests/form_tests.js M test/qunit/tests/galaxy-app-base.js M test/qunit/tests/graph.js M test/qunit/tests/hda-base.js M test/qunit/tests/history_contents_model_tests.js M test/qunit/tests/job-dag.js M test/qunit/tests/list-of-pairs-collection-creator.js M test/qunit/tests/masthead_tests.js M test/qunit/tests/metrics-logger.js M test/qunit/tests/modal_tests.js M test/qunit/tests/page_tests.js M test/qunit/tests/popover_tests.js M test/qunit/tests/ui_tests.js M test/qunit/tests/upload_dialog_tests.js M test/qunit/tests/utils_test.js M test/qunit/tests/workflow_editor_tests.js Log Message: ----------- Update my substitution fixer script; this works way better and is easier to migrate forward re: default elements in non-ES6 modules. Commit: 000b3c08c3fce60c1cc81bb24afcf73c5fc117d3 https://github.com/galaxyproject/galaxy/commit/000b3c08c3fce60c1cc81bb24afc… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: R .ci/tox_envs/flake8/Pipfile R .ci/tox_envs/flake8/requirements.txt R .ci/tox_envs/flake8_imports/Pipfile R .ci/tox_envs/flake8_imports/requirements.txt R .ci/tox_envs/update.sh M Makefile M client/galaxy/scripts/mvc/grid/grid-template.js M config/galaxy.ini.sample M doc/source/project/issues.rst M lib/galaxy/app.py M lib/galaxy/config.py A lib/galaxy/dependencies/dev-requirements.txt R lib/galaxy/dependencies/dev-requirements.txt M lib/galaxy/dependencies/pinned-requirements.txt A lib/galaxy/dependencies/pipfiles/develop/Pipfile A lib/galaxy/dependencies/pipfiles/develop/Pipfile.lock A lib/galaxy/dependencies/pipfiles/develop/pinned-hashed-requirements.txt A lib/galaxy/dependencies/pipfiles/develop/pinned-requirements.txt A lib/galaxy/dependencies/pipfiles/flake8/Pipfile A lib/galaxy/dependencies/pipfiles/flake8/Pipfile.lock A lib/galaxy/dependencies/pipfiles/flake8/pinned-hashed-requirements.txt A lib/galaxy/dependencies/pipfiles/flake8/pinned-requirements.txt A lib/galaxy/dependencies/pipfiles/flake8_imports/Pipfile A lib/galaxy/dependencies/pipfiles/flake8_imports/Pipfile.lock A lib/galaxy/dependencies/pipfiles/flake8_imports/pinned-hashed-requirements.txt A lib/galaxy/dependencies/pipfiles/flake8_imports/pinned-requirements.txt A lib/galaxy/dependencies/pipfiles/update.sh M lib/galaxy/jobs/handler.py M lib/galaxy/jobs/runners/__init__.py M lib/galaxy/model/migrate/check.py A lib/galaxy/util/monitors.py M lib/galaxy/workflow/scheduling_manager.py M static/maps/mvc/grid/grid-template.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/grid/grid-template.js M test/base/driver_util.py M test/base/integration_util.py M tox.ini Log Message: ----------- Merge remote-tracking branch 'upstream/dev' into es6imports Commit: 1b0e89a445b9d6ed278b20969bef8a7d509955a8 https://github.com/galaxyproject/galaxy/commit/1b0e89a445b9d6ed278b20969bef… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M Makefile Log Message: ----------- Minor reorg in makefile to group client targets in order Commit: 3b776753eb7dcba0de67059d466e20e873cbb187 https://github.com/galaxyproject/galaxy/commit/3b776753eb7dcba0de67059d466e… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M client/galaxy/scripts/mvc/history/history-contents.js M client/galaxy/scripts/mvc/history/history-structure-view.js M static/maps/mvc/history/history-contents.js.map M static/maps/mvc/history/history-structure-view.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/history/history-contents.js M templates/webapps/galaxy/history/structure.mako Log Message: ----------- Slight refactoring/reorg in history-contents for clarity. Commit: 152d895d2fa0603fc8584590e29f0a659b84d049 https://github.com/galaxyproject/galaxy/commit/152d895d2fa0603fc8584590e29f… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M client/galaxy/scripts/mvc/library/library-dataset-view.js M static/maps/mvc/library/library-dataset-view.js.map M static/scripts/mvc/library/library-dataset-view.js Log Message: ----------- Fix undefined 'that', standardize to self. Commit: 06030b145d2f8e68d4f6f9c3ab0f1501430e34bf https://github.com/galaxyproject/galaxy/commit/06030b145d2f8e68d4f6f9c3ab0f… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js M static/maps/mvc/collection/list-of-pairs-collection-creator.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/collection/list-of-pairs-collection-creator.js Log Message: ----------- Fix undefined (and then duplicate) scope of 'creator'; use self. Commit: a2c3da5f0b3291f6d8d7860d762ff79f502100e0 https://github.com/galaxyproject/galaxy/commit/a2c3da5f0b3291f6d8d7860d762f… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M client/galaxy/scripts/mvc/grid/grid-view.js M static/maps/mvc/grid/grid-view.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/grid/grid-view.js Log Message: ----------- Specify window.top as in other places. Commit: 5ed511c7496bcbe90a6740a706b75d3fbbcca516 https://github.com/galaxyproject/galaxy/commit/5ed511c7496bcbe90a6740a706b7… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M client/galaxy/scripts/mvc/library/library-folderlist-view.js M static/maps/mvc/library/library-folderlist-view.js.map M static/scripts/mvc/library/library-folderlist-view.js Log Message: ----------- Fix another undefined 'that'; swap to self for clarity. Commit: e8a8c5179d8aad184fd06611d1eefd947ec5b3ad https://github.com/galaxyproject/galaxy/commit/e8a8c5179d8aad184fd06611d1ee… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M client/galaxy/scripts/mvc/dataset/dataset-error.js M static/maps/mvc/dataset/dataset-error.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Comment dead code instead of leaving an 'if false' disable. Commit: 93660098f18f22e233caaef64d0e3ebe67bec80e https://github.com/galaxyproject/galaxy/commit/93660098f18f22e233caaef64d0e… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-view.js M static/maps/mvc/workflow/workflow-view.js.map M static/scripts/mvc/workflow/workflow-view.js Log Message: ----------- Remove some old, dead code from workflow view (should have been removed with the rewrite when PJA display was reimplemented) Commit: 2d388bc743716315d69de78bcd152f6b3b6bcba3 https://github.com/galaxyproject/galaxy/commit/2d388bc743716315d69de78bcd15… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M client/galaxy/scripts/galaxy.interactive_environments.js M static/maps/galaxy.interactive_environments.js.map M static/scripts/galaxy.interactive_environments.js Log Message: ----------- Export default function for galaxy.interactive_environments. Commit: 2004f31ad5ecdf388cafd62eabb0e12ed4256442 https://github.com/galaxyproject/galaxy/commit/2004f31ad5ecdf388cafd62eabb0… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M config/plugins/interactive_environments/common/templates/ie.mako M config/plugins/interactive_environments/jupyter/templates/jupyter.mako Log Message: ----------- Fix really wonky IE requires to work with AMD modules correctly. Commit: f7ccdd7c74433690dcfe63b87ace7eb6081f32fc https://github.com/galaxyproject/galaxy/commit/f7ccdd7c74433690dcfe63b87ace… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M client/galaxy/scripts/galaxy.interactive_environments.js M config/plugins/interactive_environments/jupyter/static/js/jupyter.js M config/plugins/interactive_environments/jupyter/templates/jupyter.mako M static/maps/galaxy.interactive_environments.js.map M static/scripts/galaxy.interactive_environments.js Log Message: ----------- Fix jupyter javascript; this all needs a ton of disentanglement and standardization. Commit: 5fc47e3bcded6b653285b6c61ef6a23809cf7021 https://github.com/galaxyproject/galaxy/commit/5fc47e3bcded6b653285b6c61ef6… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M config/plugins/interactive_environments/rstudio/static/js/rstudio.js M config/plugins/interactive_environments/rstudio/templates/rstudio.mako Log Message: ----------- Update rstudio use of galaxy.interactive_environments Commit: bd34c750aeda18ff8660f65ebe49f1a6ab2de57f https://github.com/galaxyproject/galaxy/commit/bd34c750aeda18ff8660f65ebe49… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M config/plugins/interactive_environments/bam_iobio/static/js/bam_iobio.js M config/plugins/interactive_environments/bam_iobio/templates/bam_iobio.mako Log Message: ----------- Update bam_iobio use of galaxy.interactive_environments Commit: b533fc7b50e7eb943347182eef177203e354c0e1 https://github.com/galaxyproject/galaxy/commit/b533fc7b50e7eb943347182eef17… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M config/plugins/interactive_environments/ethercalc/static/js/ethercalc.js M config/plugins/interactive_environments/ethercalc/templates/ethercalc.mako Log Message: ----------- Update ethercalc use of galaxy.interactive_environments Commit: 9dfe82f7ca3d83e7e2804bc5d92be53bd916d7d4 https://github.com/galaxyproject/galaxy/commit/9dfe82f7ca3d83e7e2804bc5d92b… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M config/plugins/interactive_environments/phinch/static/js/phinch.js M config/plugins/interactive_environments/phinch/templates/phinch.mako Log Message: ----------- Update phinch use of galaxy.interactive_environments Commit: 2c1ffcfe36505d5b6ebe96a4db2598db94f943cf https://github.com/galaxyproject/galaxy/commit/2c1ffcfe36505d5b6ebe96a4db25… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M config/plugins/interactive_environments/phinch/templates/phinch.mako Log Message: ----------- Consolidate require scope for phinch. Commit: e8abd20da9b3d689324570b0b3d2afc52ae3dd60 https://github.com/galaxyproject/galaxy/commit/e8abd20da9b3d689324570b0b3d2… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M config/plugins/interactive_environments/neo/static/js/neo.js M config/plugins/interactive_environments/neo/templates/neo.mako Log Message: ----------- Update neo use of galaxy.interactive_environments Commit: a27930001287f5de79e7faf4866794b7ff2be6e9 https://github.com/galaxyproject/galaxy/commit/a27930001287f5de79e7faf48667… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M config/plugins/interactive_environments/ethercalc/templates/ethercalc.mako M config/plugins/interactive_environments/jupyter/static/js/jupyter.js Log Message: ----------- Minor cleanup. Commit: 21bdc78c5ee396c5dddc72078595d0e96fe245ff https://github.com/galaxyproject/galaxy/commit/21bdc78c5ee396c5dddc72078595… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M config/plugins/interactive_environments/hicbrowser/static/js/hicbrowser.js M config/plugins/interactive_environments/hicbrowser/templates/hicbrowser.mako Log Message: ----------- Update hicexplorer use of galaxy.interactive_environments Commit: d464fe166e7332cf98efb89484806d9c46f3cfbf https://github.com/galaxyproject/galaxy/commit/d464fe166e7332cf98efb8948480… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M client/galaxy/scripts/admin.toolshed.js M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/apps/panels/admin-panel.js M client/galaxy/scripts/apps/panels/history-panel.js M client/galaxy/scripts/apps/panels/tool-panel.js M client/galaxy/scripts/galaxy.interactive_environments.js M client/galaxy/scripts/galaxy.js M client/galaxy/scripts/galaxy.library.js M client/galaxy/scripts/galaxy.pages.js M client/galaxy/scripts/i18n.js M client/galaxy/scripts/layout/generic-nav-view.js M client/galaxy/scripts/layout/masthead.js M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/layout/page.js M client/galaxy/scripts/layout/panel.js M client/galaxy/scripts/layout/router.js M client/galaxy/scripts/layout/scratchbook.js M client/galaxy/scripts/mvc/annotation.js M client/galaxy/scripts/mvc/base-mvc.js M client/galaxy/scripts/mvc/base/controlled-fetch-collection.js M client/galaxy/scripts/mvc/citation/citation-model.js M client/galaxy/scripts/mvc/citation/citation-view.js M client/galaxy/scripts/mvc/collection/base-creator.js M client/galaxy/scripts/mvc/collection/collection-li-edit.js M client/galaxy/scripts/mvc/collection/collection-li.js M client/galaxy/scripts/mvc/collection/collection-model.js M client/galaxy/scripts/mvc/collection/collection-view-edit.js M client/galaxy/scripts/mvc/collection/collection-view.js M client/galaxy/scripts/mvc/collection/list-collection-creator.js M client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js M client/galaxy/scripts/mvc/collection/pair-collection-creator.js M client/galaxy/scripts/mvc/dataset/data.js M client/galaxy/scripts/mvc/dataset/dataset-choice.js M client/galaxy/scripts/mvc/dataset/dataset-edit-attributes.js M client/galaxy/scripts/mvc/dataset/dataset-error.js M client/galaxy/scripts/mvc/dataset/dataset-li-edit.js M client/galaxy/scripts/mvc/dataset/dataset-li.js M client/galaxy/scripts/mvc/dataset/dataset-model.js M client/galaxy/scripts/mvc/dataset/states.js M client/galaxy/scripts/mvc/form/form-data.js M client/galaxy/scripts/mvc/form/form-input.js M client/galaxy/scripts/mvc/form/form-parameters.js M client/galaxy/scripts/mvc/form/form-repeat.js M client/galaxy/scripts/mvc/form/form-section.js M client/galaxy/scripts/mvc/form/form-view.js M client/galaxy/scripts/mvc/form/form-wrapper.js M client/galaxy/scripts/mvc/grid/grid-model.js M client/galaxy/scripts/mvc/grid/grid-shared.js M client/galaxy/scripts/mvc/grid/grid-template.js M client/galaxy/scripts/mvc/grid/grid-view.js M client/galaxy/scripts/mvc/history/copy-dialog.js M client/galaxy/scripts/mvc/history/hda-model.js M client/galaxy/scripts/mvc/history/hdca-li-edit.js M client/galaxy/scripts/mvc/history/hdca-li.js M client/galaxy/scripts/mvc/history/hdca-model.js M client/galaxy/scripts/mvc/history/history-content-model.js M client/galaxy/scripts/mvc/history/history-contents.js M client/galaxy/scripts/mvc/history/history-list.js M client/galaxy/scripts/mvc/history/history-model.js M client/galaxy/scripts/mvc/history/history-preferences.js M client/galaxy/scripts/mvc/history/history-structure-view.js M client/galaxy/scripts/mvc/history/history-view-annotated.js M client/galaxy/scripts/mvc/history/history-view-edit-current.js M 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static/scripts/mvc/toolshed/toolshed-model.js M static/scripts/mvc/toolshed/util.js M static/scripts/mvc/toolshed/workflows-view.js M static/scripts/mvc/tours.js M static/scripts/mvc/ui/error-modal.js M static/scripts/mvc/ui/icon-button.js M static/scripts/mvc/ui/popup-menu.js M static/scripts/mvc/ui/ui-buttons.js M static/scripts/mvc/ui/ui-color-picker.js M static/scripts/mvc/ui/ui-drilldown.js M static/scripts/mvc/ui/ui-frames.js M static/scripts/mvc/ui/ui-list.js M static/scripts/mvc/ui/ui-misc.js M static/scripts/mvc/ui/ui-modal.js M static/scripts/mvc/ui/ui-options.js M static/scripts/mvc/ui/ui-popover.js M static/scripts/mvc/ui/ui-portlet.js M static/scripts/mvc/ui/ui-select-content.js M static/scripts/mvc/ui/ui-select-default.js M static/scripts/mvc/ui/ui-select-ftp.js M static/scripts/mvc/ui/ui-select-genomespace.js M static/scripts/mvc/ui/ui-select-library.js M static/scripts/mvc/ui/ui-select.js M static/scripts/mvc/ui/ui-slider.js M static/scripts/mvc/ui/ui-table.js M static/scripts/mvc/ui/ui-tabs.js M static/scripts/mvc/ui/ui-thumbnails.js M static/scripts/mvc/upload/collection/collection-row.js M static/scripts/mvc/upload/collection/collection-view.js M static/scripts/mvc/upload/composite/composite-row.js M static/scripts/mvc/upload/composite/composite-view.js M static/scripts/mvc/upload/default/default-row.js M static/scripts/mvc/upload/default/default-view.js M static/scripts/mvc/upload/upload-button.js M static/scripts/mvc/upload/upload-extension.js M static/scripts/mvc/upload/upload-ftp.js M static/scripts/mvc/upload/upload-model.js M static/scripts/mvc/upload/upload-settings.js M static/scripts/mvc/upload/upload-view.js M static/scripts/mvc/user/user-custom-builds.js M static/scripts/mvc/user/user-model.js M static/scripts/mvc/user/user-preferences.js M static/scripts/mvc/user/user-quotameter.js M static/scripts/mvc/visualization/visualization-model.js M static/scripts/mvc/webhooks.js M static/scripts/mvc/workflow/workflow-canvas.js M static/scripts/mvc/workflow/workflow-connector.js M static/scripts/mvc/workflow/workflow-forms.js M static/scripts/mvc/workflow/workflow-icons.js M static/scripts/mvc/workflow/workflow-manager.js M static/scripts/mvc/workflow/workflow-model.js M static/scripts/mvc/workflow/workflow-node.js M static/scripts/mvc/workflow/workflow-terminals.js M static/scripts/mvc/workflow/workflow-view-data.js M static/scripts/mvc/workflow/workflow-view-node.js M static/scripts/mvc/workflow/workflow-view-terminals.js M static/scripts/mvc/workflow/workflow-view.js M static/scripts/mvc/workflow/workflow.js M static/scripts/nls/de/locale.js M static/scripts/nls/es/locale.js M static/scripts/nls/fr/locale.js M static/scripts/nls/ja/locale.js M static/scripts/nls/locale.js M static/scripts/nls/zh/locale.js M static/scripts/onload.js M static/scripts/polyfills.js M static/scripts/reports_webapp/run_stats.js M static/scripts/ui/autocom_tagging.js M static/scripts/ui/editable-text.js M static/scripts/ui/fa-icon-button.js M static/scripts/ui/filter-control.js M static/scripts/ui/hoverhighlight.js M static/scripts/ui/loading-indicator.js M static/scripts/ui/mode-button.js M static/scripts/ui/pagination.js M static/scripts/ui/peek-column-selector.js M static/scripts/ui/popupmenu.js M static/scripts/ui/scroll-panel.js M static/scripts/ui/search-input.js M static/scripts/utils/add-logging.js M static/scripts/utils/ajax-queue.js M static/scripts/utils/async-save-text.js M static/scripts/utils/config.js M static/scripts/utils/deferred.js M static/scripts/utils/graph.js M static/scripts/utils/levenshtein.js M static/scripts/utils/localization.js M static/scripts/utils/metrics-logger.js M static/scripts/utils/natural-sort.js M static/scripts/utils/query-string-parsing.js M static/scripts/utils/uploadbox.js M static/scripts/utils/utils.js M static/scripts/viz/bbi-data-manager.js M static/scripts/viz/circster.js M static/scripts/viz/phyloviz.js M static/scripts/viz/sweepster.js M static/scripts/viz/trackster.js M static/scripts/viz/trackster/filters.js M static/scripts/viz/trackster/painters.js M static/scripts/viz/trackster/slotting.js M static/scripts/viz/trackster/tracks.js M static/scripts/viz/trackster/util.js M static/scripts/viz/visualization.js M static/scripts/viz/viz_views.js M templates/galaxy_client_app.mako M templates/grid_base.mako M templates/webapps/galaxy/dataset/display.mako M templates/webapps/galaxy/dataset/tabular_chunked.mako M templates/webapps/galaxy/galaxy.masthead.mako M templates/webapps/galaxy/galaxy.panels.mako M templates/webapps/galaxy/history/citations.mako M templates/webapps/galaxy/history/display.mako M templates/webapps/galaxy/history/display_structured.mako M templates/webapps/galaxy/history/embed.mako M templates/webapps/galaxy/history/structure.mako M templates/webapps/galaxy/history/view.mako M templates/webapps/galaxy/history/view_multiple.mako M templates/webapps/galaxy/page/editor.mako M templates/webapps/galaxy/visualization/display.mako M templates/webapps/galaxy/visualization/phyloviz.mako M templates/webapps/galaxy/visualization/sweepster.mako M templates/webapps/galaxy/workflow/editor.mako M templates/webapps/tool_shed/group/index.mako M test/qunit/test-app.js M test/qunit/tests/form_tests.js M test/qunit/tests/galaxy-app-base.js M test/qunit/tests/graph.js M test/qunit/tests/hda-base.js M test/qunit/tests/history_contents_model_tests.js M test/qunit/tests/job-dag.js M test/qunit/tests/list-of-pairs-collection-creator.js M test/qunit/tests/masthead_tests.js M test/qunit/tests/metrics-logger.js M test/qunit/tests/modal_tests.js M test/qunit/tests/page_tests.js M test/qunit/tests/popover_tests.js M test/qunit/tests/ui_tests.js M test/qunit/tests/upload_dialog_tests.js M test/qunit/tests/utils_test.js M test/qunit/tests/workflow_editor_tests.js Log Message: ----------- Merge pull request #4827 from dannon/es6imports ES6 broad pass overhaul Compare: https://github.com/galaxyproject/galaxy/compare/15dc1939f18a...7196059afdcc

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[galaxyproject/usegalaxy-playbook] 5b1c52: Upgrade dunovo to 2.0.8
by GitHub 03 Nov '17

03 Nov '17

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 5b1c5245baf71a336cfaa8a9834e5aa51a2aab71 https://github.com/galaxyproject/usegalaxy-playbook/commit/5b1c5245baf71a33… Author: Dave B <dave(a)bx.psu.edu> Date: 2017-11-03 (Fri, 03 Nov 2017) Changed paths: M env/main/files/galaxy/var/integrated_tool_panel.xml M env/main/files/galaxy/var/shed_tool_conf.xml Log Message: ----------- Upgrade dunovo to 2.0.8

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[galaxyproject/galaxy] 8837ae: also throw all stats in a single bucket
by GitHub 02 Nov '17

02 Nov '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 8837ae05d3956b5fa020ca67aac9a4ac903fe795 https://github.com/galaxyproject/galaxy/commit/8837ae05d3956b5fa020ca67aac9… Author: E Rasche <hxr(a)hx42.org> Date: 2017-10-05 (Thu, 05 Oct 2017) Changed paths: M lib/galaxy/web/framework/middleware/graphite.py M lib/galaxy/web/framework/middleware/statsd.py Log Message: ----------- also throw all stats in a single bucket Commit: 15dc1939f18a107457e6457e4572d7d1b9579b3a https://github.com/galaxyproject/galaxy/commit/15dc1939f18a107457e6457e4572… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M lib/galaxy/web/framework/middleware/graphite.py M lib/galaxy/web/framework/middleware/statsd.py Log Message: ----------- Merge pull request #4758 from erasche/p90 Additionally send all stats to a single bucket Compare: https://github.com/galaxyproject/galaxy/compare/21c09f740be6...15dc1939f18a

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[galaxyproject/infrastructure-playbook] 11a090: WIP untested DNS role
by GitHub 02 Nov '17

02 Nov '17

Branch: refs/heads/galaxyenv Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 11a090947ac0ba95dabd2e119d987e6456d1aa3a https://github.com/galaxyproject/infrastructure-playbook/commit/11a090947ac… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: A roles/dns/defaults/main.yml A roles/dns/tasks/bind.yml A roles/dns/tasks/debian.yml A roles/dns/tasks/main.yml A roles/dns/templates/named_options.conf.j2 A roles/dns/templates/named_views.conf.j2 A roles/dns/vars/bind.yml A roles/dns/vars/debian.yml Log Message: ----------- WIP untested DNS role

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[galaxyproject/infrastructure-playbook] d37184: Update common_roles again
by GitHub 02 Nov '17

02 Nov '17

Branch: refs/heads/galaxyenv Home: https://github.com/galaxyproject/infrastructure-playbook Commit: d371844a507ea06459c1f97061ccf358c206a758 https://github.com/galaxyproject/infrastructure-playbook/commit/d371844a507… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M common_roles Log Message: ----------- Update common_roles again Commit: ff0e0168086421bcc2c2e0bbc729bd2a41ab5686 https://github.com/galaxyproject/infrastructure-playbook/commit/ff0e0168086… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: A env/galaxy/_inc_baseenv.yml M env/galaxy/playbook.yml Log Message: ----------- Start splitting galaxy env playbook into different purposes Commit: e2c5215c9ebe97f7e57dfd64bdf6834ebfcc87ec https://github.com/galaxyproject/infrastructure-playbook/commit/e2c5215c9eb… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: A .pass M ansible.cfg Log Message: ----------- Automatically read vault password from pass, or prompt if pass is not installed or doesn't work Commit: 307ccf6db7b987294ef0fd98796e035fd09658dd https://github.com/galaxyproject/infrastructure-playbook/commit/307ccf6db7b… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M common_roles M env/galaxy/playbook.yml A roles/kerberos_kdc/meta/required_vars.yml Log Message: ----------- Check kerberos_kdc required vars Commit: 74a26b2310b2ec823d9ff5a7a1e8791ed647007d https://github.com/galaxyproject/infrastructure-playbook/commit/74a26b2310b… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: A env/galaxy/core.yml Log Message: ----------- Start a playbook for core infrastructure servers Commit: 24640abf6b83801fcd454701af832600caa4633b https://github.com/galaxyproject/infrastructure-playbook/commit/24640abf6b8… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M env/galaxy/inventory Log Message: ----------- Document the purpose of the virtual group and add duvel to it Commit: c8e17bbd96626c9fe80ebae6060ef4f3a331345c https://github.com/galaxyproject/infrastructure-playbook/commit/c8e17bbd966… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: M roles/kerberos/defaults/main.yml A roles/kerberos/meta/required_vars.yml Log Message: ----------- Define required vars for kerberos role and set some defaults that can be easily set Commit: 8e0068ac5994f6c361a5bf8abdcf93d0ceea35c3 https://github.com/galaxyproject/infrastructure-playbook/commit/8e0068ac599… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-11-02 (Thu, 02 Nov 2017) Changed paths: A env/galaxy/group_vars/kerberosservers/vars.yml A env/galaxy/group_vars/kerberosservers/vault.yml M roles/kerberos_kdc/defaults/main.yml M roles/kerberos_kdc/meta/main.yml M roles/kerberos_kdc/tasks/heimdal.yml A roles/kerberos_kdc/tasks/heimdal_keytab.yml M roles/kerberos_kdc/tasks/main.yml M roles/kerberos_kdc/templates/kadmind.acl.j2 M roles/kerberos_kdc/templates/kdc.conf.j2 A roles/kerberos_kdc/templates/slaves.j2 M roles/kerberos_kdc/vars/debian.yml M roles/kerberos_kdc/vars/heimdal.yml Log Message: ----------- Allow Ansible to generate iprop principals/keytabs, and other kerberos_kdc role improvements. Compare: https://github.com/galaxyproject/infrastructure-playbook/compare/9d32f3fd87…

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