- galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] 1a5fda: Add --force_path_paste argument to tool test verif...
by Dannon 14 Feb '19

14 Feb '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 1a5fda5dc200ba0be428cf2d070fb0f53806b7bd https://github.com/galaxyproject/galaxy/commit/1a5fda5dc200ba0be428cf2d070f… Author: John Chilton <jmchilton(a)gmail.com> Date: 2019-02-13 (Wed, 13 Feb 2019) Changed paths: M lib/galaxy/tools/verify/interactor.py M lib/galaxy/tools/verify/script.py Log Message: ----------- Add --force_path_paste argument to tool test verify script. Reverts small changes in https://github.com/galaxyproject/galaxy/pull/7160 and brings in option added in https://github.com/galaxyproject/galaxy-lib/pull/137. Though #7160 made huge strides in usability of this stuff, I still like making strides toward pasting paths since I believe this is the long term direction this code should move in (https://github.com/galaxyproject/galaxy/pull/7160#issuecomment-450751074) Some people (@bgruening) don't even think Galaxy should have a copy of the test data - so that will even more encourage pasting URIs. Commit: 380438411dca18d8e374cc720e17972b1f7c73ea https://github.com/galaxyproject/galaxy/commit/380438411dca18d8e374cc720e17… Author: Dannon <dannon.baker(a)gmail.com> Date: 2019-02-14 (Thu, 14 Feb 2019) Changed paths: M lib/galaxy/tools/verify/interactor.py M lib/galaxy/tools/verify/script.py Log Message: ----------- Merge pull request #7356 from jmchilton/force_path_paste Add --force_path_paste argument to tool test verify script. Compare: https://github.com/galaxyproject/galaxy/compare/9d80059fd6e7...380438411dca

1 0

[galaxyproject/galaxy] 25f84b: Stronger ToolProvidedMetadata abstraction.
by John Chilton 14 Feb '19

14 Feb '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 25f84b69b6a8cf0d5cccd12aceba9b50dfe3e765 https://github.com/galaxyproject/galaxy/commit/25f84b69b6a8cf0d5cccd12aceba… Author: John Chilton <jmchilton(a)gmail.com> Date: 2019-01-15 (Tue, 15 Jan 2019) Changed paths: M lib/galaxy/jobs/__init__.py M lib/galaxy/tools/__init__.py M lib/galaxy/tools/parameters/output_collect.py A lib/galaxy/tools/provided_metadata.py M test/unit/tools/test_collect_primary_datasets.py Log Message: ----------- Stronger ToolProvidedMetadata abstraction. - Move to its own file (goal is to be importable from set_metadata without baggage from tools and jobs modules). - Proper interface with some basic documentation. Commit: b0eed2238558ea860c7a07953ad73a3e04c21bae https://github.com/galaxyproject/galaxy/commit/b0eed2238558ea860c7a07953ad7… Author: Marius van den Beek <m.vandenbeek(a)gmail.com> Date: 2019-02-13 (Wed, 13 Feb 2019) Changed paths: M lib/galaxy/tools/provided_metadata.py Log Message: ----------- Update lib/galaxy/tools/provided_metadata.py Co-Authored-By: jmchilton <jmchilton(a)gmail.com> Commit: b2cebdeec159e9557a6305e4a3957afd92a5730e https://github.com/galaxyproject/galaxy/commit/b2cebdeec159e9557a6305e4a395… Author: Marius van den Beek <m.vandenbeek(a)gmail.com> Date: 2019-02-13 (Wed, 13 Feb 2019) Changed paths: M lib/galaxy/tools/provided_metadata.py Log Message: ----------- Update lib/galaxy/tools/provided_metadata.py Co-Authored-By: jmchilton <jmchilton(a)gmail.com> Commit: 9d80059fd6e78672593ef6d63a339612bef6031f https://github.com/galaxyproject/galaxy/commit/9d80059fd6e78672593ef6d63a33… Author: John Chilton <jmchilton(a)gmail.com> Date: 2019-02-14 (Thu, 14 Feb 2019) Changed paths: M lib/galaxy/jobs/__init__.py M lib/galaxy/tools/__init__.py M lib/galaxy/tools/parameters/output_collect.py A lib/galaxy/tools/provided_metadata.py M test/unit/tools/test_collect_primary_datasets.py Log Message: ----------- Merge pull request #7156 from jmchilton/tool_provided_metadata Stronger ToolProvidedMetadata abstraction. Compare: https://github.com/galaxyproject/galaxy/compare/9b2f3af6f396...9d80059fd6e7

1 0

[galaxyproject/galaxy] 6beeec: job script returns tool exit code in any case
by John Chilton 14 Feb '19

14 Feb '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 6beeec836f6c6ab479700e6a1e1accbe5069dacf https://github.com/galaxyproject/galaxy/commit/6beeec836f6c6ab479700e6a1e1a… Author: M Bernt <m.bernt(a)ufz.de> Date: 2019-01-02 (Wed, 02 Jan 2019) Changed paths: M lib/galaxy/jobs/command_factory.py M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh M lib/galaxy/jobs/runners/util/job_script/__init__.py M test/unit/jobs/test_command_factory.py Log Message: ----------- job script returns tool exit code in any case Commit: 9b2f3af6f3967ab172cb5bbaa527ee622dd8fcf5 https://github.com/galaxyproject/galaxy/commit/9b2f3af6f3967ab172cb5bbaa527… Author: John Chilton <jmchilton(a)gmail.com> Date: 2019-02-14 (Thu, 14 Feb 2019) Changed paths: M lib/galaxy/jobs/command_factory.py M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh M lib/galaxy/jobs/runners/util/job_script/__init__.py M test/unit/jobs/test_command_factory.py Log Message: ----------- Merge pull request #7147 from bernt-matthias/topic/job_script_exit_code make job script actually return tool exit code Compare: https://github.com/galaxyproject/galaxy/compare/00652f0b3a94...9b2f3af6f396

1 0

[galaxyproject/galaxy] b18aa1: group: don't remove empty cells at the begin/start...
by John Chilton 14 Feb '19

14 Feb '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: b18aa199aa57e87ef62013f5c4542f7491ec9b19 https://github.com/galaxyproject/galaxy/commit/b18aa199aa57e87ef62013f5c454… Author: M Bernt <m.bernt(a)ufz.de> Date: 2019-01-11 (Fri, 11 Jan 2019) Changed paths: M tools/stats/grouping.py Log Message: ----------- group: don't remove empty cells at the begin/start of lines currently group removes empty cells at the begin and end of lines additionally the sort command line is changed (hoping that this looks a bit more obvious) Commit: bc86e37d85ee09dad5ddbb4f4d25673c7707ea10 https://github.com/galaxyproject/galaxy/commit/bc86e37d85ee09dad5ddbb4f4d25… Author: bernt(a)informatik.uni-leipzig.de <bernt(a)informatik.uni-leipzig.de> Date: 2019-01-12 (Sat, 12 Jan 2019) Changed paths: A test-data/groupby_out1.dat A test-data/groupby_out2.dat A test-data/groupby_out3.tabular A test-data/groupby_out4.tabular M tools/stats/grouping.py M tools/stats/grouping.xml Log Message: ----------- groupby: reenabled tests and added some, more bugfix - make script exit with code 1 in case of error - removed one more strip - adapted tool syntax to best practices Commit: 00652f0b3a9442d875266f1fd7856ec54c2eae81 https://github.com/galaxyproject/galaxy/commit/00652f0b3a9442d875266f1fd785… Author: John Chilton <jmchilton(a)gmail.com> Date: 2019-02-14 (Thu, 14 Feb 2019) Changed paths: A test-data/groupby_out1.dat A test-data/groupby_out2.dat A test-data/groupby_out3.tabular A test-data/groupby_out4.tabular M tools/stats/grouping.py M tools/stats/grouping.xml Log Message: ----------- Merge pull request #7205 from bernt-matthias/topic/grouping-w-emptycells group: don't remove empty cells at the begin/start of lines Compare: https://github.com/galaxyproject/galaxy/compare/5bf87645e225...00652f0b3a94

1 0

[galaxyproject/galaxy] ead622: Eliminate web framework import in history export.
by Martin Cech 14 Feb '19

14 Feb '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: ead62233bf3ec1ed30584a1b7f0884e25a19292a https://github.com/galaxyproject/galaxy/commit/ead62233bf3ec1ed30584a1b7f08… Author: John Chilton <jmchilton(a)gmail.com> Date: 2019-02-14 (Thu, 14 Feb 2019) Changed paths: M lib/galaxy/tools/imp_exp/__init__.py Log Message: ----------- Eliminate web framework import in history export. Commit: 5bf87645e225d2548c31d2b101d246d5a81b7474 https://github.com/galaxyproject/galaxy/commit/5bf87645e225d2548c31d2b101d2… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-02-14 (Thu, 14 Feb 2019) Changed paths: M lib/galaxy/tools/imp_exp/__init__.py Log Message: ----------- Merge pull request #7358 from jmchilton/framework_out_export Eliminate web framework import in history export. Compare: https://github.com/galaxyproject/galaxy/compare/724125a5d384...5bf87645e225

1 0

[galaxyproject/galaxy] 06d1e5: fix the name of presevered test-data
by John Chilton 14 Feb '19

14 Feb '19

Branch: refs/heads/release_19.01 Home: https://github.com/galaxyproject/galaxy Commit: 06d1e5a8b22072bd1de9961bcfcf051a86b90f5f https://github.com/galaxyproject/galaxy/commit/06d1e5a8b22072bd1de9961bcfcf… Author: Bjoern Gruening <bjoern.gruening(a)gmail.com> Date: 2019-02-12 (Tue, 12 Feb 2019) Changed paths: M lib/galaxy/tools/verify/__init__.py Log Message: ----------- fix the name of presevered test-data Commit: 728ff2075de24fc2386ae925efd8fde885d959db https://github.com/galaxyproject/galaxy/commit/728ff2075de24fc2386ae925efd8… Author: John Chilton <jmchilton(a)gmail.com> Date: 2019-02-14 (Thu, 14 Feb 2019) Changed paths: M lib/galaxy/tools/verify/__init__.py Log Message: ----------- Merge pull request #7352 from bgruening/test_data_fix fix the filename of saved test-data Compare: https://github.com/galaxyproject/galaxy/compare/45d06acbc8f3...728ff2075de2

1 0

[galaxyproject/usegalaxy-playbook] 98302d: Install wrappers for bedtools 2.27.0
by Dave B. 14 Feb '19

14 Feb '19

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 98302d7abdf0cef96cd0b692131b49f0631a15d2 https://github.com/galaxyproject/usegalaxy-playbook/commit/98302d7abdf0cef9… Author: Dave B <dave(a)bx.psu.edu> Date: 2019-02-14 (Thu, 14 Feb 2019) Changed paths: M env/main/files/galaxy/var/integrated_tool_panel.xml M env/main/files/galaxy/var/shed_tool_conf.xml M env/main/files/galaxy/var/shed_tool_data_table_conf.xml Log Message: ----------- Install wrappers for bedtools 2.27.0

1 0

[galaxyproject/usegalaxy-playbook] 7cf076: update TTS and MTS
by Martin Cech 14 Feb '19

14 Feb '19

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 7cf0769e688848efdeffb0bdbdb314a39e9978b3 https://github.com/galaxyproject/usegalaxy-playbook/commit/7cf0769e688848ef… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-02-14 (Thu, 14 Feb 2019) Changed paths: M env/testtoolshed/group_vars/toolshedservers/vars.yml M env/toolshed/group_vars/toolshedservers/vars.yml Log Message: ----------- update TTS and MTS

1 0

[galaxyproject/usegalaxy-playbook] 7eb752: Update Test
by Nate Coraor 14 Feb '19

14 Feb '19

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 7eb752f9757594ac7e747852eab9b8c1cdce3a19 https://github.com/galaxyproject/usegalaxy-playbook/commit/7eb752f9757594ac… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2019-02-14 (Thu, 14 Feb 2019) Changed paths: M env/test/files/galaxy/galaxy_version.yml Log Message: ----------- Update Test

1 0

[galaxyproject/galaxy] 245eb9: test: added a test check for counting paired colle...
by Marius van den Beek 14 Feb '19

14 Feb '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 245eb97693a6b65843e81df21d7e1f630868fb75 https://github.com/galaxyproject/galaxy/commit/245eb97693a6b65843e81df21d7e… Author: M Bernt <m.bernt(a)ufz.de> Date: 2019-02-14 (Thu, 14 Feb 2019) Changed paths: M test/functional/tools/output_filter.xml Log Message: ----------- test: added a test check for counting paired collections Commit: 724125a5d38430545c60d64124f1b6b3f241f7c3 https://github.com/galaxyproject/galaxy/commit/724125a5d38430545c60d64124f1… Author: Marius van den Beek <m.vandenbeek(a)gmail.com> Date: 2019-02-14 (Thu, 14 Feb 2019) Changed paths: M test/functional/tools/output_filter.xml Log Message: ----------- Merge pull request #7359 from bernt-matthias/topic/test-paired-count test: added a test check for counting paired collections Compare: https://github.com/galaxyproject/galaxy/compare/0020c7d23297...724125a5d384

1 0

[galaxyproject/galaxy] affab0: Simplify item_attrs - eliminate RuntimeException n...
by Nicola Soranzo 13 Feb '19

13 Feb '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: affab0138fa9aa56847c1d9f69c7859df3ba3eb8 https://github.com/galaxyproject/galaxy/commit/affab0138fa9aa56847c1d9f69c7… Author: John Chilton <jmchilton(a)gmail.com> Date: 2019-02-11 (Mon, 11 Feb 2019) Changed paths: M lib/galaxy/model/item_attrs.py M lib/galaxy/web/framework/helpers/grids.py M lib/galaxy/webapps/reports/framework/grids.py Log Message: ----------- Simplify item_attrs - eliminate RuntimeException never caught. Commit: 572d74249ebd84d22bf2a99f40db7b37c01ba5b7 https://github.com/galaxyproject/galaxy/commit/572d74249ebd84d22bf2a99f40db… Author: John Chilton <jmchilton(a)gmail.com> Date: 2019-02-11 (Mon, 11 Feb 2019) Changed paths: M lib/galaxy/model/item_attrs.py M lib/galaxy/web/framework/helpers/grids.py M lib/galaxy/webapps/reports/framework/grids.py Log Message: ----------- Eliminate code dup around item_attrs. Commit: 79642f3ff2002981526dd81a6073e109fb2f455f https://github.com/galaxyproject/galaxy/commit/79642f3ff2002981526dd81a6073… Author: John Chilton <jmchilton(a)gmail.com> Date: 2019-02-11 (Mon, 11 Feb 2019) Changed paths: M lib/galaxy/model/item_attrs.py Log Message: ----------- item_attrs: Refactor _get_annotation_assoc_class out of mixin into standalone method. Commit: 27662005be9edb0639a893766cf678fcf940c76c https://github.com/galaxyproject/galaxy/commit/27662005be9edb0639a893766cf6… Author: John Chilton <jmchilton(a)gmail.com> Date: 2019-02-11 (Mon, 11 Feb 2019) Changed paths: M lib/galaxy/model/item_attrs.py Log Message: ----------- item_attrs: Refactor get_item_annotation_obj out of mixin into standalone method. Commit: 5c35b7b296075409cf3a8a322b16975afd4dfbc8 https://github.com/galaxyproject/galaxy/commit/5c35b7b296075409cf3a8a322b16… Author: John Chilton <jmchilton(a)gmail.com> Date: 2019-02-11 (Mon, 11 Feb 2019) Changed paths: M lib/galaxy/model/item_attrs.py Log Message: ----------- item_attrs: Refactor more methods out of mixin into standalone method. Commit: 834e9f2edcfd0d2e6685b08d3a50e61c0db2dbbe https://github.com/galaxyproject/galaxy/commit/834e9f2edcfd0d2e6685b08d3a50… Author: John Chilton <jmchilton(a)gmail.com> Date: 2019-02-11 (Mon, 11 Feb 2019) Changed paths: M lib/galaxy/tools/imp_exp/__init__.py Log Message: ----------- Eliminate mixin use in galaxy.tools.imp_exp. Commit: 0020c7d23297bffc5dad775834b5bb011040873b https://github.com/galaxyproject/galaxy/commit/0020c7d23297bffc5dad775834b5… Author: Nicola Soranzo <nicola.soranzo(a)gmail.com> Date: 2019-02-13 (Wed, 13 Feb 2019) Changed paths: M lib/galaxy/model/item_attrs.py M lib/galaxy/tools/imp_exp/__init__.py M lib/galaxy/web/framework/helpers/grids.py M lib/galaxy/webapps/reports/framework/grids.py Log Message: ----------- Merge pull request #7346 from jmchilton/item_attrs_refactor_2 Refactor item_attrs for reuse without mixin inheritance. Compare: https://github.com/galaxyproject/galaxy/compare/110d95531361...0020c7d23297

1 0

[galaxyproject/galaxy] f32085: Drop 'fade in' classes on iframe; prefer static di...
by John Chilton 13 Feb '19

13 Feb '19

Branch: refs/heads/release_19.01 Home: https://github.com/galaxyproject/galaxy Commit: f3208503f69bae63ef48e18deb85e7aa974e20c5 https://github.com/galaxyproject/galaxy/commit/f3208503f69bae63ef48e18deb85… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2019-02-12 (Tue, 12 Feb 2019) Changed paths: M client/galaxy/scripts/layout/communication-server-view.js Log Message: ----------- Drop 'fade in' classes on iframe; prefer static display without extra animations and fixes opacity issue from biostar. Commit: bfeb2727573a6c1c77551369bf46acf93d78190b https://github.com/galaxyproject/galaxy/commit/bfeb2727573a6c1c77551369bf46… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2019-02-12 (Tue, 12 Feb 2019) Changed paths: M client/galaxy/scripts/layout/communication-server-view.js M client/galaxy/style/scss/base.scss Log Message: ----------- drop redundant communication server frame styles. Commit: b29b8b5c17f4126b0af597c0bccac850767f5aff https://github.com/galaxyproject/galaxy/commit/b29b8b5c17f4126b0af597c0bcca… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2019-02-12 (Tue, 12 Feb 2019) Changed paths: M client/galaxy/scripts/layout/communication-server-view.js Log Message: ----------- Use standard bootstrap classes for sizing here since it's only used in one spot. Commit: 45d06acbc8f31bdeab7b895d3fadf71d4a9aaa84 https://github.com/galaxyproject/galaxy/commit/45d06acbc8f31bdeab7b895d3fad… Author: John Chilton <jmchilton(a)gmail.com> Date: 2019-02-13 (Wed, 13 Feb 2019) Changed paths: M client/galaxy/scripts/layout/communication-server-view.js M client/galaxy/style/scss/base.scss Log Message: ----------- Merge pull request #7354 from dannon/comm_server_fixes [19.01] Communication Server Display Fixes Compare: https://github.com/galaxyproject/galaxy/compare/62d8d808eb09...45d06acbc8f3

1 0

[galaxyproject/galaxy] 4427d3: Separate client node version requirement into indi...
by John Chilton 13 Feb '19

13 Feb '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 4427d3a982cff3321c878543dad72a1611afedac https://github.com/galaxyproject/galaxy/commit/4427d3a982cff3321c878543dad7… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2019-02-13 (Wed, 13 Feb 2019) Changed paths: A client/.node_version M scripts/common_startup.sh Log Message: ----------- Separate client node version requirement into individual dotfile for easier reading/use in ansible playbooks Commit: 110d95531361f2e527f13de2e3658c4216b5cbc0 https://github.com/galaxyproject/galaxy/commit/110d95531361f2e527f13de2e365… Author: John Chilton <jmchilton(a)gmail.com> Date: 2019-02-13 (Wed, 13 Feb 2019) Changed paths: A client/.node_version M scripts/common_startup.sh Log Message: ----------- Merge pull request #7357 from dannon/node-ver-in-dotfile Separate client node version requirement into individual dotfile for … Compare: https://github.com/galaxyproject/galaxy/compare/0e03aea084d0...110d95531361

1 0

[galaxyproject/usegalaxy-playbook] d879b4: Allocate 16GB for:
by Nate Coraor 13 Feb '19

13 Feb '19

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: d879b4e3e36186421a88ce8d260cedad18b69bec https://github.com/galaxyproject/usegalaxy-playbook/commit/d879b4e3e3618642… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2019-02-13 (Wed, 13 Feb 2019) Changed paths: M env/main/templates/galaxy/config/job_conf.xml.j2 M env/test/templates/galaxy/config/job_conf.xml.j2 Log Message: ----------- Allocate 16GB for: - toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_read_duplication/2.6.4 - toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_RPKM_saturation/2.6.4 - toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_bam2wig/2.6.4 Resolves #142.

1 0

[galaxyproject/usegalaxy-playbook] 5c70fd: Update Main
by Nate Coraor 13 Feb '19

13 Feb '19

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 5c70fddc6ed2bf5f8baa6d600d8a2266ebe7f5d8 https://github.com/galaxyproject/usegalaxy-playbook/commit/5c70fddc6ed2bf5f… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2019-02-13 (Wed, 13 Feb 2019) Changed paths: M env/main/files/galaxy/galaxy_version.yml M env/main/group_vars/all.yml Log Message: ----------- Update Main

1 0

[galaxyproject/galaxy] a10d2c: Add/pin configurable node version to 18.09. Backp...
by Dannon 13 Feb '19

13 Feb '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: a10d2c51d3e29ceef17b056992f04f98b0f8472c https://github.com/galaxyproject/galaxy/commit/a10d2c51d3e29ceef17b056992f0… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2019-01-18 (Fri, 18 Jan 2019) Changed paths: M scripts/common_startup.sh Log Message: ----------- Add/pin configurable node version to 18.09. Backport/tweak of https://github.com/galaxyproject/galaxy/pull/7220) Commit: 9f501bb2b0bfa5193cd908d5f43bdca9a4bc5a2d https://github.com/galaxyproject/galaxy/commit/9f501bb2b0bfa5193cd908d5f43b… Author: Matt Chambers <matt.chambers42(a)gmail.com> Date: 2019-02-04 (Mon, 04 Feb 2019) Changed paths: M config/datatypes_conf.xml.sample M lib/galaxy/datatypes/binary.py A lib/galaxy/datatypes/test/brukerbaf.d.tar Log Message: ----------- Add datatypes and sniffers for several directory-based mass spectrometry formats: Bruker BAF, Agilent/Bruker YEP, Bruker TDF, Agilent MassHunter, and Waters MassLynx Commit: 68a66f462e007fdbcf8e966fc5cc1a7ea06a8527 https://github.com/galaxyproject/galaxy/commit/68a66f462e007fdbcf8e966fc5cc… Author: Bjoern Gruening <bjoern.gruening(a)gmail.com> Date: 2019-02-05 (Tue, 05 Feb 2019) Changed paths: M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt Log Message: ----------- update h5py dependency Commit: d79514b823371c36c12dcbb6aef25a4490cd50ca https://github.com/galaxyproject/galaxy/commit/d79514b823371c36c12dcbb6aef2… Author: Bjoern Gruening <bjoern.gruening(a)gmail.com> Date: 2019-02-05 (Tue, 05 Feb 2019) Changed paths: M lib/galaxy/tools/verify/asserts/__init__.py Log Message: ----------- allow assertions on binary inputs Commit: e37036af04ac34dd7c865f5f11ccaa0ee4e17e9a https://github.com/galaxyproject/galaxy/commit/e37036af04ac34dd7c865f5f11cc… Author: Bjoern Gruening <bjoern.gruening(a)gmail.com> Date: 2019-02-05 (Tue, 05 Feb 2019) Changed paths: A lib/galaxy/tools/verify/asserts/hdf5.py Log Message: ----------- add hdf5 assert tests Commit: db2987b2b21fefad9feb2af0bd4f93b7d490361f https://github.com/galaxyproject/galaxy/commit/db2987b2b21fefad9feb2af0bd4f… Author: Bjoern Gruening <bjoern.gruening(a)gmail.com> Date: 2019-02-05 (Tue, 05 Feb 2019) Changed paths: A test/functional/tools/validation_hdf5.xml Log Message: ----------- add test tool for new assertions Commit: d4420b75662b7667d430f78be67b09e69037a77b https://github.com/galaxyproject/galaxy/commit/d4420b75662b7667d430f78be67b… Author: Bjoern Gruening <bjoern.gruening(a)gmail.com> Date: 2019-02-05 (Tue, 05 Feb 2019) Changed paths: M test/functional/tools/samples_tool_conf.xml Log Message: ----------- register new test tool Commit: a00fd508b758fc73aeb537ca98156fff1c7ac14d https://github.com/galaxyproject/galaxy/commit/a00fd508b758fc73aeb537ca9815… Author: Bjoern Gruening <bjoern.gruening(a)gmail.com> Date: 2019-02-05 (Tue, 05 Feb 2019) Changed paths: M lib/galaxy/tools/xsd/galaxy.xsd Log Message: ----------- adopt XSD for new syntax Commit: cb13e56e6bd00a932e9594241fe043f845d4f815 https://github.com/galaxyproject/galaxy/commit/cb13e56e6bd00a932e9594241fe0… Author: Bjoern Gruening <bjoern.gruening(a)gmail.com> Date: 2019-02-05 (Tue, 05 Feb 2019) Changed paths: A test-data/matrix.cool Log Message: ----------- add test-data for new hdf5 based tool test Commit: e9f40f2f95a611f0fab6d81bb225cf409b86f353 https://github.com/galaxyproject/galaxy/commit/e9f40f2f95a611f0fab6d81bb225… Author: Bjoern Gruening <bjoern.gruening(a)gmail.com> Date: 2019-02-05 (Tue, 05 Feb 2019) Changed paths: M lib/galaxy/tools/verify/asserts/hdf5.py Log Message: ----------- fix pep8 Commit: 2a97f726cc86d44610738d04755622e8e4b8342a https://github.com/galaxyproject/galaxy/commit/2a97f726cc86d44610738d047556… Author: John Chilton <jmchilton(a)gmail.com> Date: 2019-02-05 (Tue, 05 Feb 2019) Changed paths: M lib/galaxy/tools/verify/asserts/hdf5.py M lib/galaxy/tools/xsd/galaxy.xsd M test/functional/tools/validation_hdf5.xml Log Message: ----------- Tweaks to hdf5 testing. - This is in galaxy-lib so h5py import should probably be conditional. - Namespace very generic test functions a bit by adding h5 into the names. - Stricter validation of XSD (the other assertions don't have this but that is problematic on their part), I'm not sure if the docs will render unevenly now though - we may want to revisit that and do this for all the assertions. Commit: 3d4ff4fc372bc6b44b384af944b548915427fda4 https://github.com/galaxyproject/galaxy/commit/3d4ff4fc372bc6b44b384af944b5… Author: Björn Grüning <bjoern(a)gruenings.eu> Date: 2019-02-05 (Tue, 05 Feb 2019) Changed paths: M lib/galaxy/tools/verify/asserts/hdf5.py M lib/galaxy/tools/xsd/galaxy.xsd M test/functional/tools/validation_hdf5.xml Log Message: ----------- Merge pull request #41 from jmchilton/hdf5_tests Tweaks to hdf5 testing. Commit: 365ac400ae629b415b8ec11a364ec0e4465d1c7f https://github.com/galaxyproject/galaxy/commit/365ac400ae629b415b8ec11a364e… Author: Matt Chambers <matt.chambers42(a)gmail.com> Date: 2019-02-05 (Tue, 05 Feb 2019) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Fix lint errors Commit: 413af14bb55d890ca053d08877cee98ab440008f https://github.com/galaxyproject/galaxy/commit/413af14bb55d890ca053d08877ce… Author: Matt Chambers <matt.chambers42(a)gmail.com> Date: 2019-02-05 (Tue, 05 Feb 2019) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Fix lint errors Commit: d30852b286b9baba5cf6faffa389db8ec2837114 https://github.com/galaxyproject/galaxy/commit/d30852b286b9baba5cf6faffa389… Author: Matt Chambers <matt.chambers42(a)gmail.com> Date: 2019-02-05 (Tue, 05 Feb 2019) Changed paths: M config/datatypes_conf.xml.sample M lib/galaxy/datatypes/binary.py A lib/galaxy/datatypes/test/some.wiff.tar Log Message: ----------- Add wiff.tar extension and sniffer Commit: 0a7583b6de024d02b7063fa3f59c7febe63df5f5 https://github.com/galaxyproject/galaxy/commit/0a7583b6de024d02b7063fa3f59c… Author: Helena Rasche <hxr(a)hx42.org> Date: 2019-02-06 (Wed, 06 Feb 2019) Changed paths: M client/galaxy/style/scss/base.scss M client/galaxy/style/scss/theme/blue.scss Log Message: ----------- More contrast Commit: 87c82595771438b0e8244b32885430e4fe1bab6e https://github.com/galaxyproject/galaxy/commit/87c82595771438b0e8244b328854… Author: Helena Rasche <hxr(a)hx42.org> Date: 2019-02-06 (Wed, 06 Feb 2019) Changed paths: M client/galaxy/style/scss/base.scss Log Message: ----------- Add box-shadow Commit: 12fde52494541d73da42a41d026c8a0217d7533c https://github.com/galaxyproject/galaxy/commit/12fde52494541d73da42a41d026c… Author: Helena Rasche <hxr(a)hx42.org> Date: 2019-02-06 (Wed, 06 Feb 2019) Changed paths: M client/galaxy/style/scss/theme/blue.scss Log Message: ----------- remove inaccurate comment Commit: dc303f004fc5254f6de14bc29084532d3db98912 https://github.com/galaxyproject/galaxy/commit/dc303f004fc5254f6de14bc29084… Author: Matt Chambers <matt.chambers42(a)gmail.com> Date: 2019-02-06 (Wed, 06 Feb 2019) Changed paths: M config/datatypes_conf.xml.sample M lib/galaxy/datatypes/binary.py Log Message: ----------- Remove try/except in sniffers Add .d/.raw to file_ext Commit: d36cf51f6b63407fd96e49918fe6092d993275a9 https://github.com/galaxyproject/galaxy/commit/d36cf51f6b63407fd96e49918fe6… Author: Bjoern Gruening <bjoern.gruening(a)gmail.com> Date: 2019-02-06 (Wed, 06 Feb 2019) Changed paths: M lib/galaxy/tools/verify/asserts/hdf5.py M lib/galaxy/tools/xsd/galaxy.xsd M test/functional/tools/validation_hdf5.xml Log Message: ----------- change "name" to "key" Commit: b59d76eb4a928af8866275cb91afd583a82fee99 https://github.com/galaxyproject/galaxy/commit/b59d76eb4a928af8866275cb91af… Author: Helena Rasche <hxr(a)hx42.org> Date: 2019-02-06 (Wed, 06 Feb 2019) Changed paths: M lib/galaxy/util/__init__.py Log Message: ----------- Fix emoji tags Commit: dd917099ba43b3d9638c16623ca45bc13edfc9c5 https://github.com/galaxyproject/galaxy/commit/dd917099ba43b3d9638c16623ca4… Author: Marius van den Beek <m.vandenbeek(a)gmail.com> Date: 2019-02-06 (Wed, 06 Feb 2019) Changed paths: M lib/galaxy/util/__init__.py Log Message: ----------- Only block the single category of C characters that is problematic Co-Authored-By: erasche <hxr(a)hx42.org> Commit: e3f1234b2c1359e4d5353ba0e0b56834a964bb28 https://github.com/galaxyproject/galaxy/commit/e3f1234b2c1359e4d5353ba0e0b5… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-02-06 (Wed, 06 Feb 2019) Changed paths: M lib/galaxy/util/__init__.py Log Message: ----------- Merge pull request #7310 from erasche/fix-emoji-tags [19.01] Fix emoji tags Commit: 23d4af5dafbb768ba61c6cf8849cd17087f31520 https://github.com/galaxyproject/galaxy/commit/23d4af5dafbb768ba61c6cf8849c… Author: Helena Rasche <hxr(a)hx42.org> Date: 2019-02-06 (Wed, 06 Feb 2019) Changed paths: M client/galaxy/style/scss/base.scss Log Message: ----------- Revert "Add box-shadow" This reverts commit 87c82595771438b0e8244b32885430e4fe1bab6e. Commit: 8f7263a1dcce4a2d3e5c251e4253dece2998e61d https://github.com/galaxyproject/galaxy/commit/8f7263a1dcce4a2d3e5c251e4253… Author: John Chilton <jmchilton(a)gmail.com> Date: 2019-02-07 (Thu, 07 Feb 2019) Changed paths: M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt M lib/galaxy/tools/verify/asserts/__init__.py A lib/galaxy/tools/verify/asserts/hdf5.py M lib/galaxy/tools/xsd/galaxy.xsd A test-data/matrix.cool M test/functional/tools/samples_tool_conf.xml A test/functional/tools/validation_hdf5.xml Log Message: ----------- Merge pull request #7301 from bgruening/hdf5_tests Add new test syntax specific for HDF5 files Commit: f0026962219ebad2177f57ebee5ae9b837882e60 https://github.com/galaxyproject/galaxy/commit/f0026962219ebad2177f57ebee5a… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2019-02-07 (Thu, 07 Feb 2019) Changed paths: M client/galaxy/style/scss/base.scss M client/galaxy/style/scss/theme/blue.scss Log Message: ----------- Merge pull request #7309 from erasche/more-contrast [19.01] More contrast in CSS Commit: f7322d85a317614de1a745da57d5e394b5eb8041 https://github.com/galaxyproject/galaxy/commit/f7322d85a317614de1a745da57d5… Author: Björn Grüning <bjoern(a)gruenings.eu> Date: 2019-02-09 (Sat, 09 Feb 2019) Changed paths: M config/datatypes_conf.xml.sample M lib/galaxy/datatypes/binary.py A lib/galaxy/datatypes/test/brukerbaf.d.tar A lib/galaxy/datatypes/test/some.wiff.tar Log Message: ----------- Merge pull request #7299 from chambm/feature/rawtar-datatypes Add datatypes and sniffers for tar archives of directory-based MS formats and WIFF/SCAN pairs Commit: 9c9c8a5d50d7c8ae68f34712d0e9b053aed33ea2 https://github.com/galaxyproject/galaxy/commit/9c9c8a5d50d7c8ae68f34712d0e9… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-02-11 (Mon, 11 Feb 2019) Changed paths: M scripts/common_startup.sh Log Message: ----------- Merge pull request #7239 from dannon/node_ver_pin_18.09 [18.09] Add/pin configurable node version Commit: b33b06440ffdd7e58b6172315df1e015e4ac0e52 https://github.com/galaxyproject/galaxy/commit/b33b06440ffdd7e58b6172315df1… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-02-12 (Tue, 12 Feb 2019) Changed paths: M scripts/common_startup.sh Log Message: ----------- Merge branch 'release_18.09' into release_19.01 Commit: 21ce99e231af7eaa0c81e3fcc9dae1f857ab1e1c https://github.com/galaxyproject/galaxy/commit/21ce99e231af7eaa0c81e3fcc9da… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-02-12 (Tue, 12 Feb 2019) Changed paths: M client/galaxy/style/scss/base.scss M client/galaxy/style/scss/theme/blue.scss M config/datatypes_conf.xml.sample M lib/galaxy/datatypes/binary.py A lib/galaxy/datatypes/test/brukerbaf.d.tar A lib/galaxy/datatypes/test/some.wiff.tar M lib/galaxy/tools/verify/asserts/__init__.py A lib/galaxy/tools/verify/asserts/hdf5.py M lib/galaxy/tools/xsd/galaxy.xsd M lib/galaxy/util/__init__.py M scripts/common_startup.sh A test-data/matrix.cool M test/functional/tools/samples_tool_conf.xml A test/functional/tools/validation_hdf5.xml Log Message: ----------- Merge branch 'release_19.01' into dev Commit: 2f1a0cd2581ced221e8d4d9264cfe386642bdf73 https://github.com/galaxyproject/galaxy/commit/2f1a0cd2581ced221e8d4d9264cf… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2019-02-12 (Tue, 12 Feb 2019) Changed paths: M client/galaxy/style/scss/base.scss Log Message: ----------- Use brand-secondary for tool form titles in canvas (the workflow editor) Commit: 0e03aea084d05405a2b6c296877dc8513714e004 https://github.com/galaxyproject/galaxy/commit/0e03aea084d05405a2b6c296877d… Author: Dannon <dannon.baker(a)gmail.com> Date: 2019-02-13 (Wed, 13 Feb 2019) Changed paths: M client/galaxy/style/scss/base.scss M client/galaxy/style/scss/theme/blue.scss M config/datatypes_conf.xml.sample M lib/galaxy/datatypes/binary.py A lib/galaxy/datatypes/test/brukerbaf.d.tar A lib/galaxy/datatypes/test/some.wiff.tar M lib/galaxy/tools/verify/asserts/__init__.py A lib/galaxy/tools/verify/asserts/hdf5.py M lib/galaxy/tools/xsd/galaxy.xsd M lib/galaxy/util/__init__.py M scripts/common_startup.sh A test-data/matrix.cool M test/functional/tools/samples_tool_conf.xml A test/functional/tools/validation_hdf5.xml Log Message: ----------- Merge pull request #7350 from nsoranzo/merge_19.01 Merge 19.01 into dev Compare: https://github.com/galaxyproject/galaxy/compare/4b92f95e87b1...0e03aea084d0

1 0

[galaxyproject/galaxy] d710bb: Discriminate data managers and allow managed testing
by John Chilton 13 Feb '19

13 Feb '19

Branch: refs/heads/release_19.01 Home: https://github.com/galaxyproject/galaxy Commit: d710bb860b5802a64420eb3d5e1ebac6ac88d4ea https://github.com/galaxyproject/galaxy/commit/d710bb860b5802a64420eb3d5e1e… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-02-07 (Thu, 07 Feb 2019) Changed paths: M lib/galaxy/tools/data_manager/manager.py M lib/galaxy/tools/loader_directory.py Log Message: ----------- Discriminate data managers and allow managed testing I am not a big fan of the heuristic in which we fall back to loading the data manager tool relative to the data_manager_conf.xml file, but I don't really see a better way here. Commit: 62d8d808eb096daa4c99bdefd3c0aabaa3a59e56 https://github.com/galaxyproject/galaxy/commit/62d8d808eb096daa4c99bdefd3c0… Author: John Chilton <jmchilton(a)gmail.com> Date: 2019-02-13 (Wed, 13 Feb 2019) Changed paths: M lib/galaxy/tools/data_manager/manager.py M lib/galaxy/tools/loader_directory.py Log Message: ----------- Merge pull request #7331 from mvdbeek/test_data_managers [19.01] Discriminate data managers and allow managed testing Compare: https://github.com/galaxyproject/galaxy/compare/b33b06440ffd...62d8d808eb09

1 0

[galaxyproject/usegalaxy-playbook] 11e033: Add support for setting the node version. Temporar...
by Nate Coraor 13 Feb '19

13 Feb '19

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 11e03390e6a5fbf8c587a3ffc2bcddb8808a7b54 https://github.com/galaxyproject/usegalaxy-playbook/commit/11e03390e6a5fbf8… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2019-02-13 (Wed, 13 Feb 2019) Changed paths: M env/main/group_vars/cvmfsstratum0servers.yml M env/test/group_vars/cvmfsstratum0servers.yml M roles/usegalaxy_cvmfs/tasks/_inc_client_build.yml Log Message: ----------- Add support for setting the node version. Temporarily always run nodeenv. Commit: da59a8276eb31ab231f2106578821d5531bceabc https://github.com/galaxyproject/usegalaxy-playbook/commit/da59a8276eb31ab2… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2019-02-13 (Wed, 13 Feb 2019) Changed paths: M env/test/files/galaxy/galaxy_version.yml Log Message: ----------- Update Test Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/0e7966e82ed6...…

1 0

[galaxyproject/usegalaxy-playbook] 0e7966: 1. Fix a bug in the Bridges dynamic rule that woul...
by Nate Coraor 12 Feb '19

12 Feb '19

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 0e7966e82ed6eed5b35e8fb5207e9b0f7165df18 https://github.com/galaxyproject/usegalaxy-playbook/commit/0e7966e82ed6eed5… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2019-02-12 (Tue, 12 Feb 2019) Changed paths: M env/common/files/galaxy/dynamic_rules/bridges_select.py Log Message: ----------- 1. Fix a bug in the Bridges dynamic rule that would've prevented Trinity jobs for receiving more than the default 480GB of memory. 2. Set `RLIMIT_STACK` for Unicycler (SPAdes) jobs to 24MB (the value from br005), fixes #185. 3. Decrease Unicycler jobs to 288GB of memory.

1 0

[galaxyproject/usegalaxy-playbook] fc30c9: Updated featurecounts to 1.6.3+galaxy2
by Dave B. 12 Feb '19

12 Feb '19

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: fc30c998ead3245e883d7093c6bae15cbd9e927b https://github.com/galaxyproject/usegalaxy-playbook/commit/fc30c998ead3245e… Author: Dave B <dave(a)bx.psu.edu> Date: 2019-02-12 (Tue, 12 Feb 2019) Changed paths: M env/main/files/galaxy/var/integrated_tool_panel.xml M env/main/files/galaxy/var/shed_tool_conf.xml M env/main/files/galaxy/var/shed_tool_data_table_conf.xml Log Message: ----------- Updated featurecounts to 1.6.3+galaxy2

1 0

[galaxyproject/usegalaxy-playbook] f3e558: Updated VCFFilter to 1.0.0_rc1+galaxy2
by Dave B. 12 Feb '19

12 Feb '19

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: f3e55863f8b900fffb03d00fbac4774b126185f8 https://github.com/galaxyproject/usegalaxy-playbook/commit/f3e55863f8b900ff… Author: Dave B <dave(a)bx.psu.edu> Date: 2019-02-12 (Tue, 12 Feb 2019) Changed paths: M env/main/files/galaxy/var/integrated_tool_panel.xml M env/main/files/galaxy/var/shed_tool_conf.xml Log Message: ----------- Updated VCFFilter to 1.0.0_rc1+galaxy2

1 0

[galaxyproject/usegalaxy-playbook] ba5f58: Add Qiang Gu to admin users on usegalaxy.org
by Dave B. 12 Feb '19

12 Feb '19

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: ba5f588c3eba443db2d3cdb8b5f8e4e54d0f5bee https://github.com/galaxyproject/usegalaxy-playbook/commit/ba5f588c3eba443d… Author: Dave B <dave(a)bx.psu.edu> Date: 2019-02-12 (Tue, 12 Feb 2019) Changed paths: M env/main/group_vars/galaxyservers/vault.yml Log Message: ----------- Add Qiang Gu to admin users on usegalaxy.org

1 0

[galaxyproject/galaxy] a10d2c: Add/pin configurable node version to 18.09. Backp...
by Nicola Soranzo 12 Feb '19

12 Feb '19

Branch: refs/heads/release_19.01 Home: https://github.com/galaxyproject/galaxy Commit: a10d2c51d3e29ceef17b056992f04f98b0f8472c https://github.com/galaxyproject/galaxy/commit/a10d2c51d3e29ceef17b056992f0… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2019-01-18 (Fri, 18 Jan 2019) Changed paths: M scripts/common_startup.sh Log Message: ----------- Add/pin configurable node version to 18.09. Backport/tweak of https://github.com/galaxyproject/galaxy/pull/7220) Commit: 9c9c8a5d50d7c8ae68f34712d0e9b053aed33ea2 https://github.com/galaxyproject/galaxy/commit/9c9c8a5d50d7c8ae68f34712d0e9… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-02-11 (Mon, 11 Feb 2019) Changed paths: M scripts/common_startup.sh Log Message: ----------- Merge pull request #7239 from dannon/node_ver_pin_18.09 [18.09] Add/pin configurable node version Commit: b33b06440ffdd7e58b6172315df1e015e4ac0e52 https://github.com/galaxyproject/galaxy/commit/b33b06440ffdd7e58b6172315df1… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-02-12 (Tue, 12 Feb 2019) Changed paths: M scripts/common_startup.sh Log Message: ----------- Merge branch 'release_18.09' into release_19.01 Compare: https://github.com/galaxyproject/galaxy/compare/f7322d85a317...b33b06440ffd

1 0

[galaxyproject/galaxy] a10d2c: Add/pin configurable node version to 18.09. Backp...
by Martin Cech 11 Feb '19

11 Feb '19

Branch: refs/heads/release_18.09 Home: https://github.com/galaxyproject/galaxy Commit: a10d2c51d3e29ceef17b056992f04f98b0f8472c https://github.com/galaxyproject/galaxy/commit/a10d2c51d3e29ceef17b056992f0… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2019-01-18 (Fri, 18 Jan 2019) Changed paths: M scripts/common_startup.sh Log Message: ----------- Add/pin configurable node version to 18.09. Backport/tweak of https://github.com/galaxyproject/galaxy/pull/7220) Commit: 9c9c8a5d50d7c8ae68f34712d0e9b053aed33ea2 https://github.com/galaxyproject/galaxy/commit/9c9c8a5d50d7c8ae68f34712d0e9… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-02-11 (Mon, 11 Feb 2019) Changed paths: M scripts/common_startup.sh Log Message: ----------- Merge pull request #7239 from dannon/node_ver_pin_18.09 [18.09] Add/pin configurable node version Compare: https://github.com/galaxyproject/galaxy/compare/c8b3d5e4c415...9c9c8a5d50d7

1 0

[galaxyproject/usegalaxy-playbook] 5ea19c: Remove Jeremy from reserved
by Nate Coraor 11 Feb '19

11 Feb '19

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 5ea19c5707412976c194e7823a115fed4ee91bbc https://github.com/galaxyproject/usegalaxy-playbook/commit/5ea19c5707412976… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2019-02-11 (Mon, 11 Feb 2019) Changed paths: M env/common/files/galaxy/dynamic_rules/multi_dynamic_walltime.py M env/common/files/galaxy/dynamic_rules/reserved.py Log Message: ----------- Remove Jeremy from reserved

1 0