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[galaxyproject/galaxy] bc9f9b: Adapt release notes boot strap to new issues.
by GitHub 28 Jan '16

28 Jan '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: bc9f9b9bf1de555db3a56b50a6655862f3cb4c73 https://github.com/galaxyproject/galaxy/commit/bc9f9b9bf1de555db3a56b50a665… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M scripts/bootstrap_history.py Log Message: ----------- Adapt release notes boot strap to new issues. Commit: 528f80e40b7f7d729ce0761a25315b2a140f758a https://github.com/galaxyproject/galaxy/commit/528f80e40b7f7d729ce0761a2531… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: A doc/source/releases/16.01.rst M doc/source/releases/16.01_announce.rst A doc/source/releases/16.04_announce.rst Log Message: ----------- Auto-generate 16.01 release notes. Commit: 4064bbf94f6d167d62e65b5fed988fb4232fd6ca https://github.com/galaxyproject/galaxy/commit/4064bbf94f6d167d62e65b5fed98… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M doc/source/releases/16.01.rst M doc/source/releases/16.01_announce.rst M doc/source/releases/index.rst Log Message: ----------- 16.01 release notes. Commit: f0b5f7757e4df3226db30271e64646c828306aad https://github.com/galaxyproject/galaxy/commit/f0b5f7757e4df3226db30271e646… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M doc/source/releases/16.01_announce.rst Log Message: ----------- add link to Main tour; add sentence to WF nesting Commit: 79dfff4d65a6e8a2e102aae5d9af129c445fe9a5 https://github.com/galaxyproject/galaxy/commit/79dfff4d65a6e8a2e102aae5d9af… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M doc/source/releases/16.01.rst Log Message: ----------- Typo discovered by @nsoranzo Commit: 281a53d97567dbc5458b47e283f891e91b680bc9 https://github.com/galaxyproject/galaxy/commit/281a53d97567dbc5458b47e283f8… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M doc/source/releases/16.01.rst Log Message: ----------- Small RST fixes. Commit: 08fbd8923af0ba5012e23a774adea7e878ea2047 https://github.com/galaxyproject/galaxy/commit/08fbd8923af0ba5012e23a774ade… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M doc/source/releases/16.01.rst Log Message: ----------- Merge some entries. Add some missing PRs. Commit: b1ae5d8c67f1565084eb811a8e84632718ac5543 https://github.com/galaxyproject/galaxy/commit/b1ae5d8c67f1565084eb811a8e84… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-01-27 (Wed, 27 Jan 2016) Changed paths: M lib/galaxy/webapps/galaxy/controllers/user.py Log Message: ----------- UI, users: allow '/user' and '/user/' to default controller and correctly return the user/index.mako template (preventing an internal error) Commit: 55f67e59d654588ff0fca9e168e8f5e1411af50a https://github.com/galaxyproject/galaxy/commit/55f67e59d654588ff0fca9e168e8… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-01-27 (Wed, 27 Jan 2016) Changed paths: M lib/galaxy/model/__init__.py Log Message: ----------- Core, HDCAs: fix 'copy_item_annotation' error when copying a history with an hdca by adding UsesAnnotations mixin to HDCA model Commit: d3277072cc49d9a7e50a9619e899c0796c2a808e https://github.com/galaxyproject/galaxy/commit/d3277072cc49d9a7e50a9619e899… Author: Aysam Guerler <aysam.guerler(a)gmail.com> Date: 2016-01-28 (Thu, 28 Jan 2016) Changed paths: M lib/galaxy/webapps/galaxy/controllers/user.py Log Message: ----------- Merge pull request #1594 from carlfeberhard/release_16.01 [16.01] UI, users: allow '/user' and '/user/' to default controller and corre… Commit: c60ddc241b9bb92ea0c67fea16b2ec5fa415bceb https://github.com/galaxyproject/galaxy/commit/c60ddc241b9bb92ea0c67fea16b2… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-28 (Thu, 28 Jan 2016) Changed paths: M lib/galaxy/model/__init__.py Log Message: ----------- Merge pull request #1599 from carlfeberhard/fix.hdca-copy [16.01] Core, HDCAs: fix 'copy_item_annotation' error when copying a history … Commit: f499ec0cabefb62b87d43af223d0473e2528dcc7 https://github.com/galaxyproject/galaxy/commit/f499ec0cabefb62b87d43af223d0… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-01-28 (Thu, 28 Jan 2016) Changed paths: A doc/source/releases/16.01.rst M doc/source/releases/16.01_announce.rst A doc/source/releases/16.04_announce.rst M doc/source/releases/index.rst M scripts/bootstrap_history.py Log Message: ----------- Merge pull request #1585 from jmchilton/16.01_release_notes [16.01] Release notes for 16.01 Commit: a2887dfe189dae64f08a0e7d12d65bbc2492c7ba https://github.com/galaxyproject/galaxy/commit/a2887dfe189dae64f08a0e7d12d6… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-28 (Thu, 28 Jan 2016) Changed paths: A doc/source/releases/16.01.rst M doc/source/releases/16.01_announce.rst A doc/source/releases/16.04_announce.rst M doc/source/releases/index.rst M lib/galaxy/model/__init__.py M lib/galaxy/webapps/galaxy/controllers/user.py M scripts/bootstrap_history.py Log Message: ----------- Merge 16.01 into dev. Commit: db221325dac10d84ed56691cc08d1b666491e26c https://github.com/galaxyproject/galaxy/commit/db221325dac10d84ed56691cc08d… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-28 (Thu, 28 Jan 2016) Changed paths: A doc/source/releases/16.01.rst M doc/source/releases/16.01_announce.rst A doc/source/releases/16.04_announce.rst M doc/source/releases/index.rst M lib/galaxy/model/__init__.py M lib/galaxy/webapps/galaxy/controllers/user.py M scripts/bootstrap_history.py Log Message: ----------- Merge pull request #1607 from jmchilton/dev_merge_4 Merge 16.01 into dev. Compare: https://github.com/galaxyproject/galaxy/compare/51188233cee3...db221325dac1

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[galaxyproject/galaxy] bc9f9b: Adapt release notes boot strap to new issues.
by GitHub 28 Jan '16

28 Jan '16

Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: bc9f9b9bf1de555db3a56b50a6655862f3cb4c73 https://github.com/galaxyproject/galaxy/commit/bc9f9b9bf1de555db3a56b50a665… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M scripts/bootstrap_history.py Log Message: ----------- Adapt release notes boot strap to new issues. Commit: 528f80e40b7f7d729ce0761a25315b2a140f758a https://github.com/galaxyproject/galaxy/commit/528f80e40b7f7d729ce0761a2531… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: A doc/source/releases/16.01.rst M doc/source/releases/16.01_announce.rst A doc/source/releases/16.04_announce.rst Log Message: ----------- Auto-generate 16.01 release notes. Commit: 4064bbf94f6d167d62e65b5fed988fb4232fd6ca https://github.com/galaxyproject/galaxy/commit/4064bbf94f6d167d62e65b5fed98… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M doc/source/releases/16.01.rst M doc/source/releases/16.01_announce.rst M doc/source/releases/index.rst Log Message: ----------- 16.01 release notes. Commit: f0b5f7757e4df3226db30271e64646c828306aad https://github.com/galaxyproject/galaxy/commit/f0b5f7757e4df3226db30271e646… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M doc/source/releases/16.01_announce.rst Log Message: ----------- add link to Main tour; add sentence to WF nesting Commit: 79dfff4d65a6e8a2e102aae5d9af129c445fe9a5 https://github.com/galaxyproject/galaxy/commit/79dfff4d65a6e8a2e102aae5d9af… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M doc/source/releases/16.01.rst Log Message: ----------- Typo discovered by @nsoranzo Commit: 281a53d97567dbc5458b47e283f891e91b680bc9 https://github.com/galaxyproject/galaxy/commit/281a53d97567dbc5458b47e283f8… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M doc/source/releases/16.01.rst Log Message: ----------- Small RST fixes. Commit: 08fbd8923af0ba5012e23a774adea7e878ea2047 https://github.com/galaxyproject/galaxy/commit/08fbd8923af0ba5012e23a774ade… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M doc/source/releases/16.01.rst Log Message: ----------- Merge some entries. Add some missing PRs. Commit: f499ec0cabefb62b87d43af223d0473e2528dcc7 https://github.com/galaxyproject/galaxy/commit/f499ec0cabefb62b87d43af223d0… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-01-28 (Thu, 28 Jan 2016) Changed paths: A doc/source/releases/16.01.rst M doc/source/releases/16.01_announce.rst A doc/source/releases/16.04_announce.rst M doc/source/releases/index.rst M scripts/bootstrap_history.py Log Message: ----------- Merge pull request #1585 from jmchilton/16.01_release_notes [16.01] Release notes for 16.01 Compare: https://github.com/galaxyproject/galaxy/compare/c60ddc241b9b...f499ec0cabef

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[galaxyproject/galaxy] 55f67e: Core, HDCAs: fix 'copy_item_annotation' error when...
by GitHub 28 Jan '16

28 Jan '16

Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: 55f67e59d654588ff0fca9e168e8f5e1411af50a https://github.com/galaxyproject/galaxy/commit/55f67e59d654588ff0fca9e168e8… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-01-27 (Wed, 27 Jan 2016) Changed paths: M lib/galaxy/model/__init__.py Log Message: ----------- Core, HDCAs: fix 'copy_item_annotation' error when copying a history with an hdca by adding UsesAnnotations mixin to HDCA model Commit: c60ddc241b9bb92ea0c67fea16b2ec5fa415bceb https://github.com/galaxyproject/galaxy/commit/c60ddc241b9bb92ea0c67fea16b2… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-28 (Thu, 28 Jan 2016) Changed paths: M lib/galaxy/model/__init__.py Log Message: ----------- Merge pull request #1599 from carlfeberhard/fix.hdca-copy [16.01] Core, HDCAs: fix 'copy_item_annotation' error when copying a history … Compare: https://github.com/galaxyproject/galaxy/compare/d3277072cc49...c60ddc241b9b

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[galaxyproject/galaxy]
by GitHub 28 Jan '16

28 Jan '16

Branch: refs/heads/upgrade_ts_db Home: https://github.com/galaxyproject/galaxy

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[galaxyproject/galaxy] c80a21: disable email notifications from travis
by GitHub 28 Jan '16

28 Jan '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: c80a212732246923fe8dff9961a172e82bb8d48e https://github.com/galaxyproject/galaxy/commit/c80a212732246923fe8dff9961a1… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M .travis.yml Log Message: ----------- disable email notifications from travis travis would send email to every committer on every failed build for every galaxy instance running travis (ie this one and jmchilton one) we have enough visibility of runs on PR statuses so I think we do not need this Commit: 51188233cee3cd3f7385f18bd475cddeffcec5f6 https://github.com/galaxyproject/galaxy/commit/51188233cee3cd3f7385f18bd475… Author: Aysam Guerler <aysam.guerler(a)gmail.com> Date: 2016-01-28 (Thu, 28 Jan 2016) Changed paths: M .travis.yml Log Message: ----------- Merge pull request #1592 from martenson/remove-travis-notifications disable email notifications from travis Compare: https://github.com/galaxyproject/galaxy/compare/30dcd0e39f0a...51188233cee3

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[galaxyproject/galaxy] b1ae5d: UI, users: allow '/user' and '/user/' to default c...
by GitHub 28 Jan '16

28 Jan '16

Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: b1ae5d8c67f1565084eb811a8e84632718ac5543 https://github.com/galaxyproject/galaxy/commit/b1ae5d8c67f1565084eb811a8e84… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-01-27 (Wed, 27 Jan 2016) Changed paths: M lib/galaxy/webapps/galaxy/controllers/user.py Log Message: ----------- UI, users: allow '/user' and '/user/' to default controller and correctly return the user/index.mako template (preventing an internal error) Commit: d3277072cc49d9a7e50a9619e899c0796c2a808e https://github.com/galaxyproject/galaxy/commit/d3277072cc49d9a7e50a9619e899… Author: Aysam Guerler <aysam.guerler(a)gmail.com> Date: 2016-01-28 (Thu, 28 Jan 2016) Changed paths: M lib/galaxy/webapps/galaxy/controllers/user.py Log Message: ----------- Merge pull request #1594 from carlfeberhard/release_16.01 [16.01] UI, users: allow '/user' and '/user/' to default controller and corre… Compare: https://github.com/galaxyproject/galaxy/compare/954aff7fa806...d3277072cc49

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[galaxyproject/usegalaxy-playbook] 1d1a4d: Enable harakiri mode in uWSGI to see if this helps...
by GitHub 27 Jan '16

27 Jan '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 1d1a4ddcb15fccf17c28c87bc37afddb66e8e870 https://github.com/galaxyproject/usegalaxy-playbook/commit/1d1a4ddcb15fccf1… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-01-27 (Wed, 27 Jan 2016) Changed paths: M templates/galaxy/test.galaxyproject.org/config/uwsgi.ini.j2 M templates/galaxy/usegalaxy.org/config/uwsgi.ini.j2 Log Message: ----------- Enable harakiri mode in uWSGI to see if this helps to bring workers to life. Also enable py-tracebacker, although I'm not sure it will reveal any useful information.

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[galaxyproject/galaxy] c8b005: Add a requirements file suitable for use with `con...
by GitHub 27 Jan '16

27 Jan '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: c8b0057349be9a683e295c073f66163f47c257e7 https://github.com/galaxyproject/galaxy/commit/c8b0057349be9a683e295c073f66… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: A lib/galaxy/dependencies/conda-requirements.txt Log Message: ----------- Add a requirements file suitable for use with `conda {create,install} --file`. Commit: dc801dc1f6097b283e01c784d09261b3c4ee21e5 https://github.com/galaxyproject/galaxy/commit/dc801dc1f6097b283e01c784d092… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: A doc/source/admin/framework_dependencies.rst M doc/source/admin/index.rst Log Message: ----------- Add admin documentation for framework dependencies (wheels) for the 16.01 release. Commit: 1486af0ef90a186b5648f737af32e84640263857 https://github.com/galaxyproject/galaxy/commit/1486af0ef90a186b5648f737af32… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: A lib/galaxy/dependencies/conda-environment.txt R lib/galaxy/dependencies/conda-requirements.txt Log Message: ----------- Rename conda-requirements.txt to conda-environment.txt since it is not a requirements file, include instructions on how to install remaining dependencies from pip. Commit: 9827f32775b34a566c887963103a1f921e2b7a95 https://github.com/galaxyproject/galaxy/commit/9827f32775b34a566c887963103a… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M doc/source/admin/framework_dependencies.rst Log Message: ----------- conda-requirements.txt renamed to conda-environment.txt Commit: c2d94c43bbd5929d4773e859dc1f5d8e436b0ee8 https://github.com/galaxyproject/galaxy/commit/c2d94c43bbd5929d4773e859dc1f… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: A lib/galaxy/dependencies/conda-environment.txt Log Message: ----------- Merge pull request #1560 from natefoo/conda-interop [16.01] Add a requirements file suitable for use with `conda {create,install} --file` Commit: 168f453094d546cd1552a1a179decc4914c1d93a https://github.com/galaxyproject/galaxy/commit/168f453094d546cd1552a1a179de… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M doc/source/admin/framework_dependencies.rst Log Message: ----------- Suggest installing virtualenv from brew Commit: 954aff7fa806ee77682476ac56ec95027482bb0c https://github.com/galaxyproject/galaxy/commit/954aff7fa806ee77682476ac56ec… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: A doc/source/admin/framework_dependencies.rst M doc/source/admin/index.rst Log Message: ----------- Merge pull request #1589 from natefoo/admin-docs [16.01] Add admin documentation for framework dependencies (wheels) Commit: 30dcd0e39f0ae5d2eb7671bbfaf212c0c5a77eff https://github.com/galaxyproject/galaxy/commit/30dcd0e39f0ae5d2eb7671bbfaf2… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2016-01-27 (Wed, 27 Jan 2016) Changed paths: A doc/source/admin/framework_dependencies.rst M doc/source/admin/index.rst A lib/galaxy/dependencies/conda-environment.txt Log Message: ----------- Merge branch 'release_16.01' into dev Compare: https://github.com/galaxyproject/galaxy/compare/f725e964333d...30dcd0e39f0a

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[galaxyproject/galaxy] dc801d: Add admin documentation for framework dependencies...
by GitHub 26 Jan '16

26 Jan '16

Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: dc801dc1f6097b283e01c784d09261b3c4ee21e5 https://github.com/galaxyproject/galaxy/commit/dc801dc1f6097b283e01c784d092… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: A doc/source/admin/framework_dependencies.rst M doc/source/admin/index.rst Log Message: ----------- Add admin documentation for framework dependencies (wheels) for the 16.01 release. Commit: 9827f32775b34a566c887963103a1f921e2b7a95 https://github.com/galaxyproject/galaxy/commit/9827f32775b34a566c887963103a… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M doc/source/admin/framework_dependencies.rst Log Message: ----------- conda-requirements.txt renamed to conda-environment.txt Commit: 168f453094d546cd1552a1a179decc4914c1d93a https://github.com/galaxyproject/galaxy/commit/168f453094d546cd1552a1a179de… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M doc/source/admin/framework_dependencies.rst Log Message: ----------- Suggest installing virtualenv from brew Commit: 954aff7fa806ee77682476ac56ec95027482bb0c https://github.com/galaxyproject/galaxy/commit/954aff7fa806ee77682476ac56ec… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: A doc/source/admin/framework_dependencies.rst M doc/source/admin/index.rst Log Message: ----------- Merge pull request #1589 from natefoo/admin-docs [16.01] Add admin documentation for framework dependencies (wheels) Compare: https://github.com/galaxyproject/galaxy/compare/c2d94c43bbd5...954aff7fa806

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[galaxyproject/galaxy] c8b005: Add a requirements file suitable for use with `con...
by GitHub 26 Jan '16

26 Jan '16

Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: c8b0057349be9a683e295c073f66163f47c257e7 https://github.com/galaxyproject/galaxy/commit/c8b0057349be9a683e295c073f66… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: A lib/galaxy/dependencies/conda-requirements.txt Log Message: ----------- Add a requirements file suitable for use with `conda {create,install} --file`. Commit: 1486af0ef90a186b5648f737af32e84640263857 https://github.com/galaxyproject/galaxy/commit/1486af0ef90a186b5648f737af32… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: A lib/galaxy/dependencies/conda-environment.txt R lib/galaxy/dependencies/conda-requirements.txt Log Message: ----------- Rename conda-requirements.txt to conda-environment.txt since it is not a requirements file, include instructions on how to install remaining dependencies from pip. Commit: c2d94c43bbd5929d4773e859dc1f5d8e436b0ee8 https://github.com/galaxyproject/galaxy/commit/c2d94c43bbd5929d4773e859dc1f… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: A lib/galaxy/dependencies/conda-environment.txt Log Message: ----------- Merge pull request #1560 from natefoo/conda-interop [16.01] Add a requirements file suitable for use with `conda {create,install} --file` Compare: https://github.com/galaxyproject/galaxy/compare/35f90da20ca2...c2d94c43bbd5

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[galaxyproject/galaxy] eca2c3: Failing test case to exhibit #1514.
by GitHub 26 Jan '16

26 Jan '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: eca2c3bcee2c9f05dee062c60607251a589a93fd https://github.com/galaxyproject/galaxy/commit/eca2c3bcee2c9f05dee062c60607… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-19 (Tue, 19 Jan 2016) Changed paths: M test/api/test_workflows.py A test/functional/tools/for_workflows/1.bam A test/functional/tools/for_workflows/mapper.xml A test/functional/tools/for_workflows/pileup.xml M test/functional/tools/samples_tool_conf.xml Log Message: ----------- Failing test case to exhibit #1514. Commit: f1394d250db103eda0bc88044eaa92f54f56476c https://github.com/galaxyproject/galaxy/commit/f1394d250db103eda0bc88044eaa… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-19 (Tue, 19 Jan 2016) Changed paths: M lib/galaxy/tools/parameters/basic.py M lib/galaxy/tools/parameters/validation.py Log Message: ----------- Fix #1514. Prior to PR #1302 workflows wouldn't validate call validate at all on inputs. 1302 was perhaps an over correction that causes validate to be called on datasets that aren't yet READY but require metadata. This rolls that back somewhat, other parameters will still validate - but validation asserting the existence of metadata won't get called in workflows. This is still not ideal but after 1302 and this - we are still in a better, more secure place than beforehand. One might argue that since we need to introduce a new validation point (right before a job is scheduled and set to QUEUED) - that we would be better off rolling back #1302 entirely. I've considered that, but I still think it is better to fail fast on the other problems, also I would rather call the validation code too many times than not enough and it would be very late in the release cycle for such a change. Commit: 3f51101527fee096761a4c22ee8841e64b98f7a6 https://github.com/galaxyproject/galaxy/commit/3f51101527fee096761a4c22ee88… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-20 (Wed, 20 Jan 2016) Changed paths: M lib/galaxy/jobs/actions/post.py M test/api/test_workflows.py M test/api/workflows_format_2/converter.py Log Message: ----------- Attempt to fix #1531. I was unable to reproduce #1531 in testing, but if the problem is something to do with stale state the following sledge hammer should fix it. Runt the new test case with: ./run_tests.sh -api test/api/test_workflows.py:WorkflowsApiTestCase.test_delete_intermediate_datasets_pja_1 Commit: cd95635197eddaeee55be88f96543dc3a97e9343 https://github.com/galaxyproject/galaxy/commit/cd95635197eddaeee55be88f9654… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-20 (Wed, 20 Jan 2016) Changed paths: M lib/galaxy/tools/parameters/basic.py Log Message: ----------- Fix #1538. Displaying subcollection mapping in tool forms was broken with #1308 - this fixes that I believe. Commit: bbff72e0ce9876b495971d20223780f1244d1f03 https://github.com/galaxyproject/galaxy/commit/bbff72e0ce9876b495971d202237… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-01-20 (Wed, 20 Jan 2016) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-view.js M static/maps/mvc/workflow/workflow-view.js.map M static/scripts/mvc/workflow/workflow-view.js Log Message: ----------- Fix upgrade messages Commit: 035a67d0b5a1deeb54592937150a9ae82fab997e https://github.com/galaxyproject/galaxy/commit/035a67d0b5a1deeb54592937150a… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M client/galaxy/scripts/mvc/form/form-select-content.js M client/galaxy/scripts/mvc/ui/ui-select-default.js M static/maps/mvc/form/form-select-content.js.map M static/maps/mvc/ui/ui-select-default.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/form/form-select-content.js M static/scripts/mvc/ui/ui-select-default.js Log Message: ----------- Keep track of hidden datasets Commit: 1b43e8d68ffd44780f552e2472010d02dbc274b6 https://github.com/galaxyproject/galaxy/commit/1b43e8d68ffd44780f552e247201… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M lib/galaxy/tools/special_tools.py Log Message: ----------- Logging fix. Commit: 093f1f2712eeaa3c4a23952e2488a9a7a6731b17 https://github.com/galaxyproject/galaxy/commit/093f1f2712eeaa3c4a23952e2488… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M lib/galaxy/datatypes/interval.py Log Message: ----------- Make sciex sniffer tighter. Otherwise a bed file easily could sniff as sciex. Commit: 58d75f4bc2e4e52b9f4541d20c1253e49735a22f https://github.com/galaxyproject/galaxy/commit/58d75f4bc2e4e52b9f4541d20c12… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-view.js M static/maps/mvc/workflow/workflow-view.js.map M static/scripts/mvc/workflow/workflow-view.js Log Message: ----------- Merge pull request #1550 from guerler/fix_upgrade_000 [16.01] Fix upgrade messages Commit: a00faba4fefabd1e28f3ce58603c9f99abf9a4f8 https://github.com/galaxyproject/galaxy/commit/a00faba4fefabd1e28f3ce58603c… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M client/galaxy/scripts/mvc/form/form-select-content.js M client/galaxy/scripts/mvc/ui/ui-select-default.js M static/maps/mvc/form/form-select-content.js.map M static/maps/mvc/ui/ui-select-default.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/form/form-select-content.js M static/scripts/mvc/ui/ui-select-default.js Log Message: ----------- Merge pull request #1551 from guerler/fix_hidden_rerun_000 [16.01] Keep track of hidden datasets Commit: 17abd4a30d41ff070202c1818ad84c015a642733 https://github.com/galaxyproject/galaxy/commit/17abd4a30d41ff070202c1818ad8… Author: Aysam Guerler <aysam.guerler(a)gmail.com> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M lib/galaxy/tools/parameters/basic.py M lib/galaxy/tools/parameters/validation.py M test/api/test_workflows.py A test/functional/tools/for_workflows/1.bam A test/functional/tools/for_workflows/mapper.xml A test/functional/tools/for_workflows/pileup.xml M test/functional/tools/samples_tool_conf.xml Log Message: ----------- Merge pull request #1536 from jmchilton/issue_1514 [16.01] Test case and fix for issue #1514 Commit: 2fc982027cb3de555afbd1650b52dbd84897956a https://github.com/galaxyproject/galaxy/commit/2fc982027cb3de555afbd1650b52… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M lib/galaxy/tools/special_tools.py Log Message: ----------- Merge pull request #1553 from jmchilton/logging_fix [16.01] Logging fix. Commit: e48388ef6cca6505d47b3daf3c2e0c4a5041b3f4 https://github.com/galaxyproject/galaxy/commit/e48388ef6cca6505d47b3daf3c2e… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M lib/galaxy/tools/parameters/basic.py Log Message: ----------- Merge pull request #1545 from jmchilton/subcollection_mapping_problem [16.01] Fix #1538. Commit: 8ceb4d8ee495d21a664e3faece1e072a88048494 https://github.com/galaxyproject/galaxy/commit/8ceb4d8ee495d21a664e3faece1e… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M scripts/common_startup.sh Log Message: ----------- Force --skip-venv if we can detect that Python is Conda Python. Commit: fe96255022f4fdf72f39be959a15993d014a0d38 https://github.com/galaxyproject/galaxy/commit/fe96255022f4fdf72f39be959a15… Author: Björn Grüning <bjoern(a)gruenings.eu> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M scripts/common_startup.sh Log Message: ----------- Merge pull request #1554 from natefoo/conda-interop [16.01] Force --skip-venv if we can detect that Python is Conda Python. Commit: f5fbe1c5020fb432346ce6340833937d13cbf6d0 https://github.com/galaxyproject/galaxy/commit/f5fbe1c5020fb432346ce6340833… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M client/galaxy/scripts/mvc/visualization/visualization-model.js M config/plugins/visualizations/charts/Gruntfile.js M config/plugins/visualizations/charts/static/build-app.js M config/plugins/visualizations/charts/templates/charts.mako M config/plugins/visualizations/scatterplot/templates/scatterplot.mako R static/maps/libs/backbone/backbone.js.map M static/maps/mvc/visualization/visualization-model.js.map R static/scripts/libs/backbone/backbone.js M static/scripts/mvc/visualization/visualization-model.js Log Message: ----------- Client: remove older compiled backbone/backbone.js, update scatterplot and charts for same; Visualizations: fix visualization-model url; Scatterplot: fix title bug and Galaxy var Commit: 1b7462644d0352d44b36e2d790d6d10d906e7be4 https://github.com/galaxyproject/galaxy/commit/1b7462644d0352d44b36e2d790d6… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-01-22 (Fri, 22 Jan 2016) Changed paths: M client/galaxy/scripts/mvc/visualization/visualization-model.js M config/plugins/visualizations/charts/Gruntfile.js M config/plugins/visualizations/charts/static/build-app.js M config/plugins/visualizations/charts/templates/charts.mako M config/plugins/visualizations/scatterplot/templates/scatterplot.mako R static/maps/libs/backbone/backbone.js.map M static/maps/mvc/visualization/visualization-model.js.map R static/scripts/libs/backbone/backbone.js M static/scripts/mvc/visualization/visualization-model.js Log Message: ----------- Merge pull request #1558 from carlfeberhard/release_16.01 [16.01] Fix redundant backbone and visualizations Commit: c117d400506e605c41e3837b83d79593733c5af0 https://github.com/galaxyproject/galaxy/commit/c117d400506e605c41e3837b83d7… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M lib/galaxy/datatypes/interval.py Log Message: ----------- Merge pull request #1557 from jmchilton/sciex_sniff [16.01] Tighten up ScIdx sniffer. Commit: 35f90da20ca21a8f82d1650c0cf520a064b6bd8a https://github.com/galaxyproject/galaxy/commit/35f90da20ca21a8f82d1650c0cf5… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M lib/galaxy/jobs/actions/post.py M test/api/test_workflows.py M test/api/workflows_format_2/converter.py Log Message: ----------- Merge pull request #1542 from jmchilton/did_fix [16.01] Attempt to fix #1531. Commit: 11654a0950ee89f643893de119f55314ac626217 https://github.com/galaxyproject/galaxy/commit/11654a0950ee89f643893de119f5… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M lib/galaxy/datatypes/interval.py M lib/galaxy/jobs/actions/post.py M test/api/test_workflows.py M test/api/workflows_format_2/converter.py Log Message: ----------- Merge release_16.01 into dev. Commit: f725e964333d084798410d90a522eadfcdecd540 https://github.com/galaxyproject/galaxy/commit/f725e964333d084798410d90a522… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M lib/galaxy/datatypes/interval.py M lib/galaxy/jobs/actions/post.py M test/api/test_workflows.py M test/api/workflows_format_2/converter.py Log Message: ----------- Merge pull request #1591 from jmchilton/dev_merge_3 Merge 16.01 into dev. Compare: https://github.com/galaxyproject/galaxy/compare/217e38eae30f...f725e964333d

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[galaxyproject/galaxy] 3f5110: Attempt to fix #1531.
by GitHub 26 Jan '16

26 Jan '16

Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: 3f51101527fee096761a4c22ee8841e64b98f7a6 https://github.com/galaxyproject/galaxy/commit/3f51101527fee096761a4c22ee88… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-20 (Wed, 20 Jan 2016) Changed paths: M lib/galaxy/jobs/actions/post.py M test/api/test_workflows.py M test/api/workflows_format_2/converter.py Log Message: ----------- Attempt to fix #1531. I was unable to reproduce #1531 in testing, but if the problem is something to do with stale state the following sledge hammer should fix it. Runt the new test case with: ./run_tests.sh -api test/api/test_workflows.py:WorkflowsApiTestCase.test_delete_intermediate_datasets_pja_1 Commit: 35f90da20ca21a8f82d1650c0cf520a064b6bd8a https://github.com/galaxyproject/galaxy/commit/35f90da20ca21a8f82d1650c0cf5… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M lib/galaxy/jobs/actions/post.py M test/api/test_workflows.py M test/api/workflows_format_2/converter.py Log Message: ----------- Merge pull request #1542 from jmchilton/did_fix [16.01] Attempt to fix #1531. Compare: https://github.com/galaxyproject/galaxy/compare/c117d400506e...35f90da20ca2

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[galaxyproject/galaxy] 093f1f: Make sciex sniffer tighter.
by GitHub 26 Jan '16

26 Jan '16

Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: 093f1f2712eeaa3c4a23952e2488a9a7a6731b17 https://github.com/galaxyproject/galaxy/commit/093f1f2712eeaa3c4a23952e2488… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M lib/galaxy/datatypes/interval.py Log Message: ----------- Make sciex sniffer tighter. Otherwise a bed file easily could sniff as sciex. Commit: c117d400506e605c41e3837b83d79593733c5af0 https://github.com/galaxyproject/galaxy/commit/c117d400506e605c41e3837b83d7… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M lib/galaxy/datatypes/interval.py Log Message: ----------- Merge pull request #1557 from jmchilton/sciex_sniff [16.01] Tighten up ScIdx sniffer. Compare: https://github.com/galaxyproject/galaxy/compare/1b7462644d03...c117d400506e

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[galaxyproject/galaxy] 55635b: Update ``area/`` list to reflect current areas.
by GitHub 26 Jan '16

26 Jan '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 55635bff82c12a27c0e31fa44cda70a8ff8beef2 https://github.com/galaxyproject/galaxy/commit/55635bff82c12a27c0e31fa44cda… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-25 (Mon, 25 Jan 2016) Changed paths: M doc/source/project/issues.rst Log Message: ----------- Update ``area/`` list to reflect current areas. Commit: 20f6bce375083d71eeed990615e7d2538cf7ec3f https://github.com/galaxyproject/galaxy/commit/20f6bce375083d71eeed990615e7… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-25 (Mon, 25 Jan 2016) Changed paths: M doc/source/project/issues.rst Log Message: ----------- New areas. Commit: 53c699a4c347b5f6692c398f1c034a6767b782ad https://github.com/galaxyproject/galaxy/commit/53c699a4c347b5f6692c398f1c03… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-25 (Mon, 25 Jan 2016) Changed paths: M doc/source/project/issues.rst Log Message: ----------- Add note about how to modify labels in Galaxy project. Commit: 6c487941d213ac57a83206f6e3c948d8c2b97654 https://github.com/galaxyproject/galaxy/commit/6c487941d213ac57a83206f6e3c9… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M doc/source/project/issues.rst Log Message: ----------- Adjust tooling language based on note from @nsoranzo. Commit: d1dcf25f57762d99f5318dbe26a82a99091933a8 https://github.com/galaxyproject/galaxy/commit/d1dcf25f57762d99f5318dbe26a8… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M doc/source/project/issues.rst Log Message: ----------- add plural form Commit: 217e38eae30f216dba0ca9920c76d0510c97c3bd https://github.com/galaxyproject/galaxy/commit/217e38eae30f216dba0ca9920c76… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M doc/source/project/issues.rst Log Message: ----------- Merge pull request #1579 from jmchilton/area_tags Clarify area github tags. Compare: https://github.com/galaxyproject/galaxy/compare/b77b096a3881...217e38eae30f

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[galaxyproject/usegalaxy-playbook] 7109a0: Enable bam.io on Test
by GitHub 26 Jan '16

26 Jan '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 7109a04252759a3b9d47da2706da469f2a05602d https://github.com/galaxyproject/usegalaxy-playbook/commit/7109a04252759a3b… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M stage/group_vars/galaxyservers.yml Log Message: ----------- Enable bam.io on Test

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[galaxyproject/usegalaxy-playbook] dca40e: Test mutable stuff
by GitHub 26 Jan '16

26 Jan '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: dca40e262baa309afb9204c3d4f225eae4f5382a https://github.com/galaxyproject/usegalaxy-playbook/commit/dca40e262baa309a… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M files/galaxy/test.galaxyproject.org/var/integrated_tool_panel.xml M files/galaxy/test.galaxyproject.org/var/shed_tool_conf.xml M files/galaxy/test.galaxyproject.org/var/shed_tool_data_table_conf.xml M stage/files/interactive_environments/plugins/.ansible_ie_role_current_version M stage/files/interactive_environments/proxy/.ansible_ie_role_current_version Log Message: ----------- Test mutable stuff

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[galaxyproject/galaxy] 297345: small spelling error
by GitHub 26 Jan '16

26 Jan '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 29734512abdbaa266da8d9ee39d2829c9c4ab6ee https://github.com/galaxyproject/galaxy/commit/29734512abdbaa266da8d9ee39d2… Author: matthdsm <matthias.desmet(a)ugent.be> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M config/galaxy.ini.sample Log Message: ----------- small spelling error maxiumum > maximum Commit: b77b096a3881fc841810ce834cf2c06194e4c979 https://github.com/galaxyproject/galaxy/commit/b77b096a3881fc841810ce834cf2… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M config/galaxy.ini.sample Log Message: ----------- Merge pull request #1582 from matthdsm/patch-1 small spelling error Compare: https://github.com/galaxyproject/galaxy/compare/fdb90c729f85...b77b096a3881

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[galaxyproject/galaxy] 807586: Merge release_16.01 into dev.
by GitHub 26 Jan '16

26 Jan '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 807586ace8d90b33b24a9584af73a6a4dc763b34 https://github.com/galaxyproject/galaxy/commit/807586ace8d90b33b24a9584af73… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M client/galaxy/scripts/mvc/form/form-select-content.js M client/galaxy/scripts/mvc/ui/ui-select-default.js M client/galaxy/scripts/mvc/visualization/visualization-model.js M client/galaxy/scripts/mvc/workflow/workflow-view.js M config/plugins/visualizations/charts/Gruntfile.js M config/plugins/visualizations/charts/templates/charts.mako M config/plugins/visualizations/scatterplot/templates/scatterplot.mako M lib/galaxy/tools/parameters/basic.py M lib/galaxy/tools/parameters/validation.py M lib/galaxy/tools/special_tools.py M scripts/common_startup.sh R static/maps/libs/backbone/backbone.js.map M static/maps/mvc/form/form-select-content.js.map M static/maps/mvc/ui/ui-select-default.js.map M static/maps/mvc/visualization/visualization-model.js.map M static/maps/mvc/workflow/workflow-view.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map R static/scripts/libs/backbone/backbone.js M static/scripts/mvc/form/form-select-content.js M static/scripts/mvc/ui/ui-select-default.js M static/scripts/mvc/visualization/visualization-model.js M static/scripts/mvc/workflow/workflow-view.js M test/api/test_workflows.py A test/functional/tools/for_workflows/1.bam A test/functional/tools/for_workflows/mapper.xml A test/functional/tools/for_workflows/pileup.xml M test/functional/tools/samples_tool_conf.xml Log Message: ----------- Merge release_16.01 into dev. Commit: fdb90c729f859dd6a581d71817bc0bfb3a03abd9 https://github.com/galaxyproject/galaxy/commit/fdb90c729f859dd6a581d71817bc… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-26 (Tue, 26 Jan 2016) Changed paths: M client/galaxy/scripts/mvc/form/form-select-content.js M client/galaxy/scripts/mvc/ui/ui-select-default.js M client/galaxy/scripts/mvc/visualization/visualization-model.js M client/galaxy/scripts/mvc/workflow/workflow-view.js M config/plugins/visualizations/charts/Gruntfile.js M config/plugins/visualizations/charts/templates/charts.mako M config/plugins/visualizations/scatterplot/templates/scatterplot.mako M lib/galaxy/tools/parameters/basic.py M lib/galaxy/tools/parameters/validation.py M lib/galaxy/tools/special_tools.py M scripts/common_startup.sh R static/maps/libs/backbone/backbone.js.map M static/maps/mvc/form/form-select-content.js.map M static/maps/mvc/ui/ui-select-default.js.map M static/maps/mvc/visualization/visualization-model.js.map M static/maps/mvc/workflow/workflow-view.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map R static/scripts/libs/backbone/backbone.js M static/scripts/mvc/form/form-select-content.js M static/scripts/mvc/ui/ui-select-default.js M static/scripts/mvc/visualization/visualization-model.js M static/scripts/mvc/workflow/workflow-view.js M test/api/test_workflows.py A test/functional/tools/for_workflows/1.bam A test/functional/tools/for_workflows/mapper.xml A test/functional/tools/for_workflows/pileup.xml M test/functional/tools/samples_tool_conf.xml Log Message: ----------- Merge pull request #1583 from jmchilton/dev_merge_2 Merge release_16.01 into dev. Compare: https://github.com/galaxyproject/galaxy/compare/585b93fd1868...fdb90c729f85

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[galaxyproject/galaxy] 06e9cb: remove the until-now-tolerated global side effect
by GitHub 25 Jan '16

25 Jan '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 06e9cb8b6c51ca01de5012da10e8513bccbe0443 https://github.com/galaxyproject/galaxy/commit/06e9cb8b6c51ca01de5012da10e8… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-01-25 (Mon, 25 Jan 2016) Changed paths: M client/galaxy/style/less/tour.less M static/style/blue/base.css Log Message: ----------- remove the until-now-tolerated global side effect Commit: 585b93fd186895d8727c614042029cb166613293 https://github.com/galaxyproject/galaxy/commit/585b93fd186895d8727c61404202… Author: Aysam Guerler <aysam.guerler(a)gmail.com> Date: 2016-01-25 (Mon, 25 Jan 2016) Changed paths: M client/galaxy/style/less/tour.less M static/style/blue/base.css Log Message: ----------- Merge pull request #1577 from martenson/restrict-tourpopover-to-tour restrict blue popover to tours Compare: https://github.com/galaxyproject/galaxy/compare/1275dfd09955...585b93fd1868

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[galaxyproject/galaxy] f5fbe1: Client: remove older compiled backbone/backbone.js...
by GitHub 23 Jan '16

23 Jan '16

Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: f5fbe1c5020fb432346ce6340833937d13cbf6d0 https://github.com/galaxyproject/galaxy/commit/f5fbe1c5020fb432346ce6340833… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M client/galaxy/scripts/mvc/visualization/visualization-model.js M config/plugins/visualizations/charts/Gruntfile.js M config/plugins/visualizations/charts/static/build-app.js M config/plugins/visualizations/charts/templates/charts.mako M config/plugins/visualizations/scatterplot/templates/scatterplot.mako R static/maps/libs/backbone/backbone.js.map M static/maps/mvc/visualization/visualization-model.js.map R static/scripts/libs/backbone/backbone.js M static/scripts/mvc/visualization/visualization-model.js Log Message: ----------- Client: remove older compiled backbone/backbone.js, update scatterplot and charts for same; Visualizations: fix visualization-model url; Scatterplot: fix title bug and Galaxy var Commit: 1b7462644d0352d44b36e2d790d6d10d906e7be4 https://github.com/galaxyproject/galaxy/commit/1b7462644d0352d44b36e2d790d6… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-01-22 (Fri, 22 Jan 2016) Changed paths: M client/galaxy/scripts/mvc/visualization/visualization-model.js M config/plugins/visualizations/charts/Gruntfile.js M config/plugins/visualizations/charts/static/build-app.js M config/plugins/visualizations/charts/templates/charts.mako M config/plugins/visualizations/scatterplot/templates/scatterplot.mako R static/maps/libs/backbone/backbone.js.map M static/maps/mvc/visualization/visualization-model.js.map R static/scripts/libs/backbone/backbone.js M static/scripts/mvc/visualization/visualization-model.js Log Message: ----------- Merge pull request #1558 from carlfeberhard/release_16.01 [16.01] Fix redundant backbone and visualizations Compare: https://github.com/galaxyproject/galaxy/compare/fe96255022f4...1b7462644d03

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[galaxyproject/galaxy] 4a61a4: UI, Histories: use links for file inputs shown in ...
by GitHub 22 Jan '16

22 Jan '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 4a61a4cb472f740ce98ead7fca44dcf82847c050 https://github.com/galaxyproject/galaxy/commit/4a61a4cb472f740ce98ead7fca44… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M client/galaxy/scripts/mvc/list/list-view.js M static/maps/mvc/list/list-view.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/list/list-view.js M templates/show_params.mako Log Message: ----------- UI, Histories: use links for file inputs shown in show_params (the 'i' button in the datasets of histories) that, when clicked, 1) scroll the history to the dataset shown and 2) open *that* datasets info/show_params in the center panel Commit: 017b97b7dc998151ec42c2dca919feb37d5a674d https://github.com/galaxyproject/galaxy/commit/017b97b7dc998151ec42c2dca919… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map Log Message: ----------- (repack bundles) Commit: 1275dfd09955c254b801e7be2b741d8845fa4432 https://github.com/galaxyproject/galaxy/commit/1275dfd09955c254b801e7be2b74… Author: Aysam Guerler <aysam.guerler(a)gmail.com> Date: 2016-01-22 (Fri, 22 Jan 2016) Changed paths: M client/galaxy/scripts/mvc/list/list-view.js M static/maps/mvc/list/list-view.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/list/list-view.js M templates/show_params.mako Log Message: ----------- Merge pull request #1561 from carlfeberhard/input-walking show_params input walking Compare: https://github.com/galaxyproject/galaxy/compare/a162f91447dc...1275dfd09955

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[galaxyproject/galaxy] 2b97a6: History manager: prototype history contents as a s...
by GitHub 22 Jan '16

22 Jan '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 2b97a654558c95aa3ebfee4d9521c59212e67d09 https://github.com/galaxyproject/galaxy/commit/2b97a654558c95aa3ebfee4d9521… Author: Carl Eberhard <carlfeberhard(a)gmail.com> Date: 2015-07-27 (Mon, 27 Jul 2015) Changed paths: M lib/galaxy/managers/containers.py M lib/galaxy/managers/histories.py A lib/galaxy/managers/history_contents.py A test/unit/managers/test_HistoryContentsManager.py Log Message: ----------- History manager: prototype history contents as a separate manager - one that is a facade over the common/shared interfaces of the contained classes Commit: 7aace6dee0ddad8c0325b6ccc681f5b62035acb5 https://github.com/galaxyproject/galaxy/commit/7aace6dee0ddad8c0325b6ccc681… Author: Carl Eberhard <carlfeberhard(a)gmail.com> Date: 2015-07-27 (Mon, 27 Jul 2015) Changed paths: M client/galaxy/scripts/mvc/history/history-panel.js M client/galaxy/scripts/mvc/list/list-panel.js M lib/galaxy/managers/histories.py M lib/galaxy/visualization/data_providers/genome.py M lib/galaxy/web/framework/base.py M static/maps/mvc/history/history-panel.js.map M static/maps/mvc/list/list-panel.js.map M static/scripts/mvc/history/history-panel.js M static/scripts/mvc/list/list-panel.js Log Message: ----------- Merge remote-tracking branch 'upstream/dev' into managers.history-contents Commit: c9a5ce7c28ef778fb68ce714806ee0e4cc5a16b3 https://github.com/galaxyproject/galaxy/commit/c9a5ce7c28ef778fb68ce714806e… Author: Carl Eberhard <carlfeberhard(a)gmail.com> Date: 2015-07-27 (Mon, 27 Jul 2015) Changed paths: M lib/galaxy/managers/containers.py M lib/galaxy/managers/histories.py M lib/galaxy/managers/history_contents.py M test/unit/managers/test_HistoryManager.py Log Message: ----------- History contents: remove HistoryAsContainer mixin Commit: 2c03d5330f0a45bb00c042b5553fa4fab9c3768b https://github.com/galaxyproject/galaxy/commit/2c03d5330f0a45bb00c042b5553f… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2015-12-18 (Fri, 18 Dec 2015) Changed paths: A .ci/check_controller.sh A .ci/check_mako.sh M .ci/flake8_blacklist.txt A .ci/flake8_py3_wrapper.sh M .ci/flake8_wrapper.sh A .ci/py3_sources.txt M .gitignore A CODE_OF_CONDUCT.md M CONTRIBUTING.md M CONTRIBUTORS.md A Makefile M README.rst A client/.docker-build.sh A client/Dockerfile M client/GruntFile.js M client/README.md M client/bower.json A client/galaxy/scripts/apps/analysis.js A client/galaxy/scripts/apps/history-panel.js A client/galaxy/scripts/apps/login.js A client/galaxy/scripts/apps/tool-panel.js R client/galaxy/scripts/base.js R client/galaxy/scripts/galaxy-app-base.js R client/galaxy/scripts/galaxy.autocom_tagging.js R client/galaxy/scripts/galaxy.base.js R client/galaxy/scripts/galaxy.frame.js A client/galaxy/scripts/galaxy.js M client/galaxy/scripts/galaxy.library.js R client/galaxy/scripts/galaxy.masthead.js R client/galaxy/scripts/galaxy.menu.js M client/galaxy/scripts/galaxy.pages.js R client/galaxy/scripts/galaxy.panels.js R client/galaxy/scripts/galaxy.tools.js R client/galaxy/scripts/galaxy.ui.scrollPanel.js A client/galaxy/scripts/layout/masthead.js A client/galaxy/scripts/layout/menu.js A client/galaxy/scripts/layout/modal.js A client/galaxy/scripts/layout/page.js A client/galaxy/scripts/layout/panel.js A client/galaxy/scripts/layout/scratchbook.js R client/galaxy/scripts/libs/IE/IE7.js R client/galaxy/scripts/libs/IE/IE8.js R client/galaxy/scripts/libs/IE/blank.gif R client/galaxy/scripts/libs/IE/excanvas.js R client/galaxy/scripts/libs/IE/ie7-recalc.js A client/galaxy/scripts/libs/backbone.js R client/galaxy/scripts/libs/backbone/backbone.js M client/galaxy/scripts/libs/d3.js M client/galaxy/scripts/libs/farbtastic.js A client/galaxy/scripts/libs/jquery.sparklines.js M client/galaxy/scripts/libs/jquery/jqtouch.js M client/galaxy/scripts/libs/jquery/jquery.dynatree.js M client/galaxy/scripts/libs/jquery/select2.js M client/galaxy/scripts/libs/raven.js M 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client/galaxy/scripts/mvc/dataset/dataset-choice.js M client/galaxy/scripts/mvc/dataset/dataset-li-edit.js M client/galaxy/scripts/mvc/dataset/dataset-li.js M client/galaxy/scripts/mvc/dataset/dataset-list.js M client/galaxy/scripts/mvc/dataset/dataset-model.js M client/galaxy/scripts/mvc/form/form-data.js M client/galaxy/scripts/mvc/form/form-input.js M client/galaxy/scripts/mvc/form/form-parameters.js M client/galaxy/scripts/mvc/form/form-repeat.js M client/galaxy/scripts/mvc/form/form-section.js M client/galaxy/scripts/mvc/form/form-select-content.js M client/galaxy/scripts/mvc/form/form-view.js M client/galaxy/scripts/mvc/grid/grid-model.js M client/galaxy/scripts/mvc/grid/grid-template.js M client/galaxy/scripts/mvc/grid/grid-view.js A client/galaxy/scripts/mvc/history/copy-dialog.js M client/galaxy/scripts/mvc/history/hda-li-edit.js M client/galaxy/scripts/mvc/history/hda-model.js M client/galaxy/scripts/mvc/history/hdca-li-edit.js M client/galaxy/scripts/mvc/history/hdca-li.js M 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client/galaxy/scripts/mvc/ui/ui-select-library.js M client/galaxy/scripts/mvc/ui/ui-slider.js A client/galaxy/scripts/mvc/upload/composite/composite-row.js A client/galaxy/scripts/mvc/upload/composite/composite-view.js A client/galaxy/scripts/mvc/upload/default/default-row.js A client/galaxy/scripts/mvc/upload/default/default-view.js M client/galaxy/scripts/mvc/upload/upload-button.js M client/galaxy/scripts/mvc/upload/upload-ftp.js M client/galaxy/scripts/mvc/upload/upload-model.js R client/galaxy/scripts/mvc/upload/upload-row.js M client/galaxy/scripts/mvc/upload/upload-settings.js M client/galaxy/scripts/mvc/upload/upload-view.js M client/galaxy/scripts/mvc/user/user-model.js M client/galaxy/scripts/mvc/user/user-quotameter.js M client/galaxy/scripts/mvc/visualization/visualization-model.js M client/galaxy/scripts/mvc/workflow/workflow-connector.js M client/galaxy/scripts/mvc/workflow/workflow-manager.js M client/galaxy/scripts/mvc/workflow/workflow-node.js M client/galaxy/scripts/mvc/workflow/workflow-terminals.js M client/galaxy/scripts/mvc/workflow/workflow-view-data.js M client/galaxy/scripts/mvc/workflow/workflow-view-node.js M client/galaxy/scripts/mvc/workflow/workflow-view.js M client/galaxy/scripts/nls/ja/locale.js M client/galaxy/scripts/nls/locale.js M client/galaxy/scripts/nls/zh/locale.js A client/galaxy/scripts/onload.js A client/galaxy/scripts/polyfills.js A client/galaxy/scripts/reports_webapp/run_stats.js R client/galaxy/scripts/rgenetics/checkbox_and_radiobutton.js R client/galaxy/scripts/rgenetics/helper_functions.js R client/galaxy/scripts/rgenetics/timer.js M client/galaxy/scripts/templates/compiled/panel_section.js M client/galaxy/scripts/templates/compiled/tool_form.js M client/galaxy/scripts/templates/compiled/tool_link.js M client/galaxy/scripts/templates/compiled/tool_search.js M client/galaxy/scripts/templates/tool_link.handlebars R client/galaxy/scripts/tools/rgenetics/checkbox_and_radiobutton.js R 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client/galaxy/style/less/base.less M client/galaxy/style/less/bootstrap.less M client/galaxy/style/less/galaxy_bootstrap/variables.less M client/galaxy/style/less/history.less M client/galaxy/style/less/library.less M client/galaxy/style/less/list-item.less A client/galaxy/style/less/reports.less M client/galaxy/style/less/trackster.less M client/galaxy/style/less/ui.less M client/galaxy/style/less/upload.less M client/grunt-tasks/install-libs.js M client/grunt-tasks/scripts.js M client/grunt-tasks/style.js M client/grunt-tasks/templates.js M client/package.json M client/toolshed/scripts/mvc/groups/group-detail-view.js M client/toolshed/scripts/mvc/groups/group-listrow-view.js A client/webpack.config.js M config/auth_conf.xml.sample M config/datatypes_conf.xml.sample A config/dependency_resolvers_conf.xml.sample M config/galaxy.ini.sample M config/job_conf.xml.sample_advanced A config/plugins/interactive_environments/bam_iobio/config/bam_iobio.ini.sample A 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config/plugins/visualizations/charts/static/charts/tools.js M config/plugins/visualizations/charts/static/library/ui-table-form.js M config/plugins/visualizations/charts/static/views/editor.js M config/plugins/visualizations/charts/static/views/group.js M config/plugins/visualizations/charts/static/views/viewport.js M config/plugins/visualizations/charts/templates/charts.mako A config/plugins/visualizations/csg/config/csg.xml A config/plugins/visualizations/csg/static/Detector.js A config/plugins/visualizations/csg/static/OrbitControls.js A config/plugins/visualizations/csg/static/PLYLoader.js A config/plugins/visualizations/csg/static/VTKLoader.js A config/plugins/visualizations/csg/static/dat.gui.min.js A config/plugins/visualizations/csg/static/three.min.js A config/plugins/visualizations/csg/templates/csg.mako A config/plugins/visualizations/graphviz/README.md A config/plugins/visualizations/graphviz/config/graphviz.xml A config/plugins/visualizations/graphviz/static/css/style.css A config/plugins/visualizations/graphviz/static/img/15xvbd5.png A config/plugins/visualizations/graphviz/static/img/lite-blue-check.png A config/plugins/visualizations/graphviz/static/js/collapse.js A config/plugins/visualizations/graphviz/static/js/cytoscape.min.js A config/plugins/visualizations/graphviz/static/js/graphVis.js A config/plugins/visualizations/graphviz/static/js/jquery.qtip.js A config/plugins/visualizations/graphviz/static/js/tip_centerwindow.js A config/plugins/visualizations/graphviz/static/js/tip_followscroll.js A config/plugins/visualizations/graphviz/static/js/toolPanelFunctions.js A config/plugins/visualizations/graphviz/static/js/wz_tooltip.js A config/plugins/visualizations/graphviz/templates/graphviz.mako M config/plugins/visualizations/trackster/config/trackster.xml A config/reports.ini.sample R config/reports_wsgi.ini.sample M config/tool_data_table_conf.xml.sample M config/tool_shed.ini.sample M contrib/galaxy_config_merger.py M 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test/unit/managers/test_HistoryContentsManager.py Log Message: ----------- History contents manager: fix tests Commit: 8e4d3845fdc6c535912d5cbca85646b367890362 https://github.com/galaxyproject/galaxy/commit/8e4d3845fdc6c535912d5cbca856… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-01-13 (Wed, 13 Jan 2016) Changed paths: M lib/galaxy/managers/base.py M lib/galaxy/managers/containers.py M lib/galaxy/managers/history_contents.py M test/unit/managers/test_HistoryContentsManager.py Log Message: ----------- History contents manager: (an attempt to) clarify/simplify/clean up, re-implement default_order_by and respect it Commit: 28b8816f46d4619b396a13deb21f15135b020b7b https://github.com/galaxyproject/galaxy/commit/28b8816f46d4619b396a13deb21f… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-01-13 (Wed, 13 Jan 2016) Changed paths: M lib/galaxy/managers/histories.py M lib/galaxy/managers/history_contents.py Log Message: ----------- History contents manager: fully 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lib/galaxy/model/migrate/versions/0067_populate_sequencer_table.py M lib/galaxy/util/pastescript/loadwsgi.py M lib/pulsar/client/amqp_exchange.py M scripts/cleanup_datasets/admin_cleanup_datasets.py M setup.cfg M static/maps/utils/utils.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/utils/utils.js M test/casperjs/casperjs_runner.py Log Message: ----------- Merge remote-tracking branch 'upstream/dev' into managers.history-contents Commit: bd237cd5863352faba908bbcf39529cd176601a0 https://github.com/galaxyproject/galaxy/commit/bd237cd5863352faba908bbcf395… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-01-14 (Thu, 14 Jan 2016) Changed paths: M lib/galaxy/managers/containers.py M lib/galaxy/managers/history_contents.py M test/unit/managers/test_HistoryContentsManager.py Log Message: ----------- History contents manager: add tests, fix order_by defaulting, clarify 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test/functional/tools/output_action_change_format.xml M test/qunit/tests/masthead_tests.js A test/qunit/tests/ui_tests.html A test/qunit/tests/ui_tests.js M test/unit/jobs/test_command_factory.py M test/unit/jobs/test_runner_local.py M test/unit/tools/test_collect_primary_datasets.py M test/unit/tools/test_execution.py M test/unit/unittest_utils/galaxy_mock.py A test/unit/web/framework/__init__.py A test/unit/web/framework/test_webapp.py Log Message: ----------- Merge remote-tracking branch 'upstream/dev' into managers.history-contents Commit: 8ab1607b556b872ccedc6411790786f0a1b5db42 https://github.com/galaxyproject/galaxy/commit/8ab1607b556b872ccedc64117907… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M test/unit/managers/test_HistoryManager.py Log Message: ----------- Testing: remove unused imports in test_HistoryManager Commit: 48f45cb1853877f78eb917121c0da4fc7dc51c15 https://github.com/galaxyproject/galaxy/commit/48f45cb1853877f78eb917121c0d… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M test/unit/managers/test_HistoryContentsManager.py Log Message: ----------- Testing: remove egg import from test_HistoryContentsManager Commit: a162f91447dc47f89df42246ce313de1e27acd35 https://github.com/galaxyproject/galaxy/commit/a162f91447dc47f89df42246ce31… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-01-22 (Fri, 22 Jan 2016) Changed paths: M lib/galaxy/managers/base.py M lib/galaxy/managers/containers.py M lib/galaxy/managers/histories.py A lib/galaxy/managers/history_contents.py A test/unit/managers/test_HistoryContentsManager.py M test/unit/managers/test_HistoryManager.py Log Message: ----------- Merge pull request #1490 from carlfeberhard/managers.history-contents An attempt to add limit/offset to history contents Compare: https://github.com/galaxyproject/galaxy/compare/0f52600583e4...a162f91447dc

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[galaxyproject/galaxy] 5f175e: Update run_test_wrapper.sh
by GitHub 22 Jan '16

22 Jan '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 5f175e35034d2a211264a2b37e9748998dc216e7 https://github.com/galaxyproject/galaxy/commit/5f175e35034d2a211264a2b37e97… Author: Dave B <dave(a)bx.psu.edu> Date: 2016-01-22 (Fri, 22 Jan 2016) Changed paths: M test/docker/base/run_test_wrapper.sh Log Message: ----------- Update run_test_wrapper.sh Commit: 0f52600583e4a4776a46ad86db75fc5f56912bf2 https://github.com/galaxyproject/galaxy/commit/0f52600583e4a4776a46ad86db75… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-01-22 (Fri, 22 Jan 2016) Changed paths: M test/docker/base/run_test_wrapper.sh Log Message: ----------- Merge pull request #1566 from galaxyproject/upgrade_ts_db Update run_test_wrapper.sh to upgrade the toolshed database before running tests. Compare: https://github.com/galaxyproject/galaxy/compare/ce3f2b9cd18c...0f52600583e4

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[galaxyproject/galaxy] 5f175e: Update run_test_wrapper.sh
by GitHub 22 Jan '16

22 Jan '16

Branch: refs/heads/upgrade_ts_db Home: https://github.com/galaxyproject/galaxy Commit: 5f175e35034d2a211264a2b37e9748998dc216e7 https://github.com/galaxyproject/galaxy/commit/5f175e35034d2a211264a2b37e97… Author: Dave B <dave(a)bx.psu.edu> Date: 2016-01-22 (Fri, 22 Jan 2016) Changed paths: M test/docker/base/run_test_wrapper.sh Log Message: ----------- Update run_test_wrapper.sh

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[galaxyproject/usegalaxy-playbook] 89cf99: update test to ce3f2b9cd18c0160ae198fe2482cd056c54...
by GitHub 22 Jan '16

22 Jan '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 89cf999d529d4c7ce698952186eccc62a0d889f5 https://github.com/galaxyproject/usegalaxy-playbook/commit/89cf999d529d4c7c… Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com> Date: 2016-01-22 (Fri, 22 Jan 2016) Changed paths: M stage/group_vars/all.yml Log Message: ----------- update test to ce3f2b9cd18c0160ae198fe2482cd056c5449e86

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