- galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] 8ceb4d: Force --skip-venv if we can detect that Python is ...
by GitHub 21 Jan '16

21 Jan '16

Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: 8ceb4d8ee495d21a664e3faece1e072a88048494 https://github.com/galaxyproject/galaxy/commit/8ceb4d8ee495d21a664e3faece1e… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M scripts/common_startup.sh Log Message: ----------- Force --skip-venv if we can detect that Python is Conda Python. Commit: fe96255022f4fdf72f39be959a15993d014a0d38 https://github.com/galaxyproject/galaxy/commit/fe96255022f4fdf72f39be959a15… Author: Björn Grüning <bjoern(a)gruenings.eu> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M scripts/common_startup.sh Log Message: ----------- Merge pull request #1554 from natefoo/conda-interop [16.01] Force --skip-venv if we can detect that Python is Conda Python. Compare: https://github.com/galaxyproject/galaxy/compare/e48388ef6cca...fe96255022f4

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[galaxyproject/galaxy]
by GitHub 21 Jan '16

21 Jan '16

Branch: refs/tags/v15.10.1 Home: https://github.com/galaxyproject/galaxy

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[galaxyproject/galaxy] aad5d9: Bump 15.10 version to 15.10.1 (and apparently it h...
by GitHub 21 Jan '16

21 Jan '16

Branch: refs/heads/release_15.10 Home: https://github.com/galaxyproject/galaxy Commit: aad5d9a2e557e935bd88f725deb10d0ed82468d8 https://github.com/galaxyproject/galaxy/commit/aad5d9a2e557e935bd88f725deb1… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M lib/galaxy/version.py Log Message: ----------- Bump 15.10 version to 15.10.1 (and apparently it has been incorrectly set to 15.10.dev all this time). Commit: 868acc362f6ce8a8b3559fcb88ebb4c060321905 https://github.com/galaxyproject/galaxy/commit/868acc362f6ce8a8b3559fcb88eb… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M lib/galaxy/version.py Log Message: ----------- Merge pull request #1555 from natefoo/release_15.10 [15.10] Bump 15.10 version to 15.10.1 Compare: https://github.com/galaxyproject/galaxy/compare/c13b1c088cfb...868acc362f6c

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[galaxyproject/galaxy] cd9563: Fix #1538.
by GitHub 21 Jan '16

21 Jan '16

Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: cd95635197eddaeee55be88f96543dc3a97e9343 https://github.com/galaxyproject/galaxy/commit/cd95635197eddaeee55be88f9654… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-20 (Wed, 20 Jan 2016) Changed paths: M lib/galaxy/tools/parameters/basic.py Log Message: ----------- Fix #1538. Displaying subcollection mapping in tool forms was broken with #1308 - this fixes that I believe. Commit: e48388ef6cca6505d47b3daf3c2e0c4a5041b3f4 https://github.com/galaxyproject/galaxy/commit/e48388ef6cca6505d47b3daf3c2e… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M lib/galaxy/tools/parameters/basic.py Log Message: ----------- Merge pull request #1545 from jmchilton/subcollection_mapping_problem [16.01] Fix #1538. Compare: https://github.com/galaxyproject/galaxy/compare/2fc982027cb3...e48388ef6cca

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[galaxyproject/galaxy] 1b43e8: Logging fix.
by GitHub 21 Jan '16

21 Jan '16

Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: 1b43e8d68ffd44780f552e2472010d02dbc274b6 https://github.com/galaxyproject/galaxy/commit/1b43e8d68ffd44780f552e247201… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M lib/galaxy/tools/special_tools.py Log Message: ----------- Logging fix. Commit: 2fc982027cb3de555afbd1650b52dbd84897956a https://github.com/galaxyproject/galaxy/commit/2fc982027cb3de555afbd1650b52… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M lib/galaxy/tools/special_tools.py Log Message: ----------- Merge pull request #1553 from jmchilton/logging_fix [16.01] Logging fix. Compare: https://github.com/galaxyproject/galaxy/compare/17abd4a30d41...2fc982027cb3

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[galaxyproject/galaxy] eca2c3: Failing test case to exhibit #1514.
by GitHub 21 Jan '16

21 Jan '16

Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: eca2c3bcee2c9f05dee062c60607251a589a93fd https://github.com/galaxyproject/galaxy/commit/eca2c3bcee2c9f05dee062c60607… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-19 (Tue, 19 Jan 2016) Changed paths: M test/api/test_workflows.py A test/functional/tools/for_workflows/1.bam A test/functional/tools/for_workflows/mapper.xml A test/functional/tools/for_workflows/pileup.xml M test/functional/tools/samples_tool_conf.xml Log Message: ----------- Failing test case to exhibit #1514. Commit: f1394d250db103eda0bc88044eaa92f54f56476c https://github.com/galaxyproject/galaxy/commit/f1394d250db103eda0bc88044eaa… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-19 (Tue, 19 Jan 2016) Changed paths: M lib/galaxy/tools/parameters/basic.py M lib/galaxy/tools/parameters/validation.py Log Message: ----------- Fix #1514. Prior to PR #1302 workflows wouldn't validate call validate at all on inputs. 1302 was perhaps an over correction that causes validate to be called on datasets that aren't yet READY but require metadata. This rolls that back somewhat, other parameters will still validate - but validation asserting the existence of metadata won't get called in workflows. This is still not ideal but after 1302 and this - we are still in a better, more secure place than beforehand. One might argue that since we need to introduce a new validation point (right before a job is scheduled and set to QUEUED) - that we would be better off rolling back #1302 entirely. I've considered that, but I still think it is better to fail fast on the other problems, also I would rather call the validation code too many times than not enough and it would be very late in the release cycle for such a change. Commit: 17abd4a30d41ff070202c1818ad84c015a642733 https://github.com/galaxyproject/galaxy/commit/17abd4a30d41ff070202c1818ad8… Author: Aysam Guerler <aysam.guerler(a)gmail.com> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M lib/galaxy/tools/parameters/basic.py M lib/galaxy/tools/parameters/validation.py M test/api/test_workflows.py A test/functional/tools/for_workflows/1.bam A test/functional/tools/for_workflows/mapper.xml A test/functional/tools/for_workflows/pileup.xml M test/functional/tools/samples_tool_conf.xml Log Message: ----------- Merge pull request #1536 from jmchilton/issue_1514 [16.01] Test case and fix for issue #1514 Compare: https://github.com/galaxyproject/galaxy/compare/a00faba4fefa...17abd4a30d41

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[galaxyproject/galaxy] 035a67: Keep track of hidden datasets
by GitHub 21 Jan '16

21 Jan '16

Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: 035a67d0b5a1deeb54592937150a9ae82fab997e https://github.com/galaxyproject/galaxy/commit/035a67d0b5a1deeb54592937150a… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M client/galaxy/scripts/mvc/form/form-select-content.js M client/galaxy/scripts/mvc/ui/ui-select-default.js M static/maps/mvc/form/form-select-content.js.map M static/maps/mvc/ui/ui-select-default.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/form/form-select-content.js M static/scripts/mvc/ui/ui-select-default.js Log Message: ----------- Keep track of hidden datasets Commit: a00faba4fefabd1e28f3ce58603c9f99abf9a4f8 https://github.com/galaxyproject/galaxy/commit/a00faba4fefabd1e28f3ce58603c… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M client/galaxy/scripts/mvc/form/form-select-content.js M client/galaxy/scripts/mvc/ui/ui-select-default.js M static/maps/mvc/form/form-select-content.js.map M static/maps/mvc/ui/ui-select-default.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/form/form-select-content.js M static/scripts/mvc/ui/ui-select-default.js Log Message: ----------- Merge pull request #1551 from guerler/fix_hidden_rerun_000 [16.01] Keep track of hidden datasets Compare: https://github.com/galaxyproject/galaxy/compare/58d75f4bc2e4...a00faba4fefa

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[galaxyproject/galaxy] bbff72: Fix upgrade messages
by GitHub 21 Jan '16

21 Jan '16

Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: bbff72e0ce9876b495971d20223780f1244d1f03 https://github.com/galaxyproject/galaxy/commit/bbff72e0ce9876b495971d202237… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-01-20 (Wed, 20 Jan 2016) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-view.js M static/maps/mvc/workflow/workflow-view.js.map M static/scripts/mvc/workflow/workflow-view.js Log Message: ----------- Fix upgrade messages Commit: 58d75f4bc2e4e52b9f4541d20c1253e49735a22f https://github.com/galaxyproject/galaxy/commit/58d75f4bc2e4e52b9f4541d20c12… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-21 (Thu, 21 Jan 2016) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-view.js M static/maps/mvc/workflow/workflow-view.js.map M static/scripts/mvc/workflow/workflow-view.js Log Message: ----------- Merge pull request #1550 from guerler/fix_upgrade_000 [16.01] Fix upgrade messages Compare: https://github.com/galaxyproject/galaxy/compare/16e0bc08c833...58d75f4bc2e4

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[galaxyproject/galaxy] bb1524: repack static scripts
by GitHub 20 Jan '16

20 Jan '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: bb152429031b4beb7a70f73b0c2722ccfab25c0f https://github.com/galaxyproject/galaxy/commit/bb152429031b4beb7a70f73b0c27… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-01-20 (Wed, 20 Jan 2016) Changed paths: M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- repack static scripts Commit: ce3f2b9cd18c0160ae198fe2482cd056c5449e86 https://github.com/galaxyproject/galaxy/commit/ce3f2b9cd18c0160ae198fe2482c… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-20 (Wed, 20 Jan 2016) Changed paths: M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Merge pull request #1548 from martenson/repack-static repack static scripts Compare: https://github.com/galaxyproject/galaxy/compare/747c981a25de...ce3f2b9cd18c

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[galaxyproject/galaxy] 66c941: Copy workflow objects when importing them.
by GitHub 20 Jan '16

20 Jan '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 66c94125ee258baf6578b439e9fb4b33f2bd5499 https://github.com/galaxyproject/galaxy/commit/66c94125ee258baf6578b439e9fb… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-11 (Mon, 11 Jan 2016) Changed paths: M lib/galaxy/model/__init__.py M lib/galaxy/web/base/controller.py M test/api/test_workflows.py M test/api/workflows_format_2/interface.py M test/api/workflows_format_2/main.py Log Message: ----------- Copy workflow objects when importing them. If not anywhere workflow.stored_workflow is checked will be broken. Commit: 95d00b4174efd23b0ad9c350d3463bf9d696d8cc https://github.com/galaxyproject/galaxy/commit/95d00b4174efd23b0ad9c350d346… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-01-14 (Thu, 14 Jan 2016) Changed paths: M lib/galaxy/util/__init__.py Log Message: ----------- Fix MIMEText usage in galaxy.util Commit: e397ebba585ed578798645ee9352b891e3055372 https://github.com/galaxyproject/galaxy/commit/e397ebba585ed578798645ee9352… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-14 (Thu, 14 Jan 2016) Changed paths: M lib/galaxy/util/__init__.py Log Message: ----------- Merge pull request #1509 from dannon/release_16.01 Fix MIMEText usage in galaxy.util Commit: c143d659d4f7b598bc89a9d06b8040dff39a1b85 https://github.com/galaxyproject/galaxy/commit/c143d659d4f7b598bc89a9d06b80… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-14 (Thu, 14 Jan 2016) Changed paths: M lib/galaxy/tools/toolbox/base.py Log Message: ----------- Revise tool caching to be less broken. Just switch the default for tool caching and only cache during initial loads of tool panels - as during a toolbox refresh. This should mean that all code from tool shed will ignore the cache and should fix #1515. Additionally, reloading the tool was broken since if would call the load tool code and then just trust the cache. This should fix tool reloading as well. Commit: 3d1ad5ad8dab30aa6c6372fbe85a0c3c7d198d61 https://github.com/galaxyproject/galaxy/commit/3d1ad5ad8dab30aa6c6372fbe85a… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-01-14 (Thu, 14 Jan 2016) Changed paths: M lib/galaxy/webapps/galaxy/controllers/user.py Log Message: ----------- Merge pull request #1511 from martenson/log-user-exceptions-properly [16.01] catch Exception and properly log errors Commit: ae2ee4a4432b55a4b0fbdd218bc34f88f7ad1b2b https://github.com/galaxyproject/galaxy/commit/ae2ee4a4432b55a4b0fbdd218bc3… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-01-15 (Fri, 15 Jan 2016) Changed paths: M lib/galaxy/tools/toolbox/base.py Log Message: ----------- Merge pull request #1517 from jmchilton/tool_cache_fixes [16.01] Tool cache fixes Commit: 817f36626d7e720b0dbb63d0071f2889146c1c41 https://github.com/galaxyproject/galaxy/commit/817f36626d7e720b0dbb63d0071f… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-01-15 (Fri, 15 Jan 2016) Changed paths: M lib/galaxy/model/__init__.py M lib/galaxy/web/base/controller.py M test/api/test_workflows.py M test/api/workflows_format_2/interface.py M test/api/workflows_format_2/main.py Log Message: ----------- Merge pull request #1474 from jmchilton/workflow_copy [16.01] Copy workflow objects when importing them. Commit: fc434d62e971df92bc51b296d119030ca85af303 https://github.com/galaxyproject/galaxy/commit/fc434d62e971df92bc51b296d119… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-01-15 (Fri, 15 Jan 2016) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Handle unvalidated values in depth Commit: 0e9302127f4478611170dee237d811e072100e99 https://github.com/galaxyproject/galaxy/commit/0e9302127f4478611170dee237d8… Author: Bjoern Gruening <bjoern.gruening(a)gmail.com> Date: 2016-01-16 (Sat, 16 Jan 2016) Changed paths: M lib/galaxy/tools/deps/resolvers/conda.py Log Message: ----------- sourcing Conda will write to stderr, we need to redirect it to stdout Commit: a77403cc9e6ef2d90ba78822afca601eed09e6ec https://github.com/galaxyproject/galaxy/commit/a77403cc9e6ef2d90ba78822afca… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-15 (Fri, 15 Jan 2016) Changed paths: M lib/galaxy/tools/deps/resolvers/conda.py Log Message: ----------- Merge pull request #1527 from bgruening/release_16.01 Sourcing Conda will write to stderr Commit: 16e0bc08c8333c75c05a1a47de57eed8196bf9d9 https://github.com/galaxyproject/galaxy/commit/16e0bc08c8333c75c05a1a47de57… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-15 (Fri, 15 Jan 2016) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Merge pull request #1526 from guerler/fix_unvalidated_001 [16.01] Handle unvalidated values in depth Commit: 151c90183bd0b0003048b706f91a835b8606a7ed https://github.com/galaxyproject/galaxy/commit/151c90183bd0b0003048b706f91a… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-20 (Wed, 20 Jan 2016) Changed paths: M lib/galaxy/model/__init__.py M lib/galaxy/tools/__init__.py M lib/galaxy/tools/deps/resolvers/conda.py M lib/galaxy/tools/toolbox/base.py M lib/galaxy/util/__init__.py M lib/galaxy/web/base/controller.py M test/api/test_workflows.py M test/api/workflows_format_2/interface.py M test/api/workflows_format_2/main.py Log Message: ----------- Merge remote-tracking branch 'jmchilton/release_16.01' into dev_merge_1 Commit: 747c981a25ded3689a9fa454fa1cd9d1f7990cca https://github.com/galaxyproject/galaxy/commit/747c981a25ded3689a9fa454fa1c… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-20 (Wed, 20 Jan 2016) Changed paths: M lib/galaxy/model/__init__.py M lib/galaxy/tools/__init__.py M lib/galaxy/tools/deps/resolvers/conda.py M lib/galaxy/tools/toolbox/base.py M lib/galaxy/util/__init__.py M lib/galaxy/web/base/controller.py M test/api/test_workflows.py M test/api/workflows_format_2/interface.py M test/api/workflows_format_2/main.py Log Message: ----------- Merge pull request #1547 from jmchilton/dev_merge_1 Merge release_16.01 into dev. Compare: https://github.com/galaxyproject/galaxy/compare/1b8f52807435...747c981a25de

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[galaxyproject/galaxy] 988bfc: add minor styling to tour popover
by GitHub 20 Jan '16

20 Jan '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 988bfc7730c14706e5ee7ff7a29dc766bf2deb39 https://github.com/galaxyproject/galaxy/commit/988bfc7730c14706e5ee7ff7a29d… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-01-19 (Tue, 19 Jan 2016) Changed paths: M client/galaxy/style/less/base.less A client/galaxy/style/less/tour.less M static/style/blue/base.css Log Message: ----------- add minor styling to tour popover Commit: 1b8f5280743526ac420280557067460d40362da5 https://github.com/galaxyproject/galaxy/commit/1b8f5280743526ac420280557067… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-01-20 (Wed, 20 Jan 2016) Changed paths: M client/galaxy/style/less/base.less A client/galaxy/style/less/tour.less M static/style/blue/base.css Log Message: ----------- Merge, rebuild style. Compare: https://github.com/galaxyproject/galaxy/compare/fe6d22e1a7e4...1b8f52807435

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[galaxyproject/infrastructure-playbook] 4732bc: Ignore workspaces rotated by ws-cleanup when backi...
by GitHub 20 Jan '16

20 Jan '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 4732bc296efd0687f1c3063aef16de8f7ec0da05 https://github.com/galaxyproject/infrastructure-playbook/commit/4732bc296ef… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-01-20 (Wed, 20 Jan 2016) Changed paths: M galaxyenv/host_vars/leeroy.galaxyproject.org.yml Log Message: ----------- Ignore workspaces rotated by ws-cleanup when backing up Jenkins

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[galaxyproject/galaxy] 1bd193: Revert "Remove handlebars and rely solely on under...
by GitHub 20 Jan '16

20 Jan '16

Branch: refs/heads/revert-1537-handlebars.removal Home: https://github.com/galaxyproject/galaxy Commit: 1bd19314bbabe61353597eb8bf92aba6fe88d7f0 https://github.com/galaxyproject/galaxy/commit/1bd19314bbabe61353597eb8bf92… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-01-19 (Tue, 19 Jan 2016) Changed paths: M client/GruntFile.js M client/README.md M client/bower.json M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/apps/tool-panel.js A client/galaxy/scripts/libs/handlebars.runtime.js M client/galaxy/scripts/mvc/tool/tools.js M client/galaxy/scripts/onload.js A client/galaxy/scripts/templates/compiled/panel_section.js A client/galaxy/scripts/templates/compiled/tool_form.js A client/galaxy/scripts/templates/compiled/tool_link.js A client/galaxy/scripts/templates/compiled/tool_search.js A client/galaxy/scripts/templates/panel_section.handlebars A client/galaxy/scripts/templates/tool_form.handlebars A client/galaxy/scripts/templates/tool_link.handlebars A client/galaxy/scripts/templates/tool_search.handlebars M client/galaxy/style/less/base.less M client/grunt-tasks/install-libs.js M client/grunt-tasks/style.js A client/grunt-tasks/templates.js M client/package.json M client/webpack.config.js M config/plugins/visualizations/scatterplot/Gruntfile.js M config/plugins/visualizations/scatterplot/package.json A config/plugins/visualizations/scatterplot/src/handlebars/chartcontrol.handlebars A config/plugins/visualizations/scatterplot/src/handlebars/datacontrol.handlebars A config/plugins/visualizations/scatterplot/src/handlebars/editor.handlebars M config/plugins/visualizations/scatterplot/src/scatterplot-config-editor.js M config/plugins/visualizations/scatterplot/static/scatterplot-edit.js M config/plugins/visualizations/scatterplot/templates/scatterplot.mako M lib/galaxy/webapps/galaxy/controllers/root.py A static/maps/libs/handlebars.runtime.js.map M static/maps/mvc/tool/tools.js.map M static/maps/onload.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map A static/scripts/libs/handlebars.runtime.js M static/scripts/mvc/tool/tools.js M static/scripts/onload.js A static/scripts/templates/compiled/panel_section.js A static/scripts/templates/compiled/tool_form.js A static/scripts/templates/compiled/tool_link.js A static/scripts/templates/compiled/tool_search.js M static/style/blue/base.css M templates/base/base_panels.mako M templates/webapps/galaxy/galaxy.panels.mako M templates/webapps/galaxy/visualization/sweepster.mako Log Message: ----------- Revert "Remove handlebars and rely solely on underscore templates"

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[galaxyproject/galaxy]
by GitHub 20 Jan '16

20 Jan '16

Branch: refs/heads/revert-1537-handlebars.removal Home: https://github.com/galaxyproject/galaxy

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[galaxyproject/galaxy] 932e68: Revert "Remove handlebars and rely solely on under...
by GitHub 20 Jan '16

20 Jan '16

Branch: refs/heads/revert-1537-handlebars.removal Home: https://github.com/galaxyproject/galaxy Commit: 932e686ff6f8cff4ba1ab4c710bcf55a679d9685 https://github.com/galaxyproject/galaxy/commit/932e686ff6f8cff4ba1ab4c710bc… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-01-19 (Tue, 19 Jan 2016) Changed paths: M client/GruntFile.js M client/README.md M client/bower.json M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/apps/tool-panel.js A client/galaxy/scripts/libs/handlebars.runtime.js M client/galaxy/scripts/mvc/tool/tools.js M client/galaxy/scripts/onload.js A client/galaxy/scripts/templates/compiled/panel_section.js A client/galaxy/scripts/templates/compiled/tool_form.js A client/galaxy/scripts/templates/compiled/tool_link.js A client/galaxy/scripts/templates/compiled/tool_search.js A client/galaxy/scripts/templates/panel_section.handlebars A client/galaxy/scripts/templates/tool_form.handlebars A client/galaxy/scripts/templates/tool_link.handlebars A client/galaxy/scripts/templates/tool_search.handlebars M client/galaxy/style/less/base.less M client/grunt-tasks/install-libs.js M client/grunt-tasks/style.js A client/grunt-tasks/templates.js M client/package.json M client/webpack.config.js M config/plugins/visualizations/scatterplot/Gruntfile.js M config/plugins/visualizations/scatterplot/package.json A config/plugins/visualizations/scatterplot/src/handlebars/chartcontrol.handlebars A config/plugins/visualizations/scatterplot/src/handlebars/datacontrol.handlebars A config/plugins/visualizations/scatterplot/src/handlebars/editor.handlebars M config/plugins/visualizations/scatterplot/src/scatterplot-config-editor.js M config/plugins/visualizations/scatterplot/static/scatterplot-edit.js M config/plugins/visualizations/scatterplot/templates/scatterplot.mako M lib/galaxy/webapps/galaxy/controllers/root.py A static/maps/libs/handlebars.runtime.js.map M static/maps/mvc/tool/tools.js.map M static/maps/onload.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map A static/scripts/libs/handlebars.runtime.js M static/scripts/mvc/tool/tools.js M static/scripts/onload.js A static/scripts/templates/compiled/panel_section.js A static/scripts/templates/compiled/tool_form.js A static/scripts/templates/compiled/tool_link.js A static/scripts/templates/compiled/tool_search.js M static/style/blue/base.css M templates/base/base_panels.mako M templates/webapps/galaxy/galaxy.panels.mako M templates/webapps/galaxy/visualization/sweepster.mako Log Message: ----------- Revert "Remove handlebars and rely solely on underscore templates"

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[galaxyproject/galaxy] cf1bca: UI, Tools: convert handlebars templates for tool p...
by GitHub 20 Jan '16

20 Jan '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: cf1bcaa0a6b6fa55f922a352a614d52be86c6c60 https://github.com/galaxyproject/galaxy/commit/cf1bcaa0a6b6fa55f922a352a614… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-01-19 (Tue, 19 Jan 2016) Changed paths: M client/galaxy/scripts/mvc/tool/tools.js M static/maps/mvc/tool/tools.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/tool/tools.js Log Message: ----------- UI, Tools: convert handlebars templates for tool panel to underscore tempaltes Commit: 250ad3773792a6156d872684d0680a684a4c9908 https://github.com/galaxyproject/galaxy/commit/250ad3773792a6156d872684d068… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-01-19 (Tue, 19 Jan 2016) Changed paths: R client/galaxy/scripts/templates/compiled/panel_section.js R client/galaxy/scripts/templates/compiled/tool_form.js R client/galaxy/scripts/templates/compiled/tool_link.js R client/galaxy/scripts/templates/compiled/tool_search.js R client/galaxy/scripts/templates/panel_section.handlebars R client/galaxy/scripts/templates/tool_form.handlebars R client/galaxy/scripts/templates/tool_link.handlebars R client/galaxy/scripts/templates/tool_search.handlebars R static/scripts/templates/compiled/panel_section.js R static/scripts/templates/compiled/tool_form.js R static/scripts/templates/compiled/tool_link.js R static/scripts/templates/compiled/tool_search.js Log Message: ----------- UI, Tools: remove handlebars templates Commit: ea304e2f588201c9145317ea664209e2b48b81e5 https://github.com/galaxyproject/galaxy/commit/ea304e2f588201c9145317ea6642… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-01-19 (Tue, 19 Jan 2016) Changed paths: M templates/base/base_panels.mako M templates/webapps/galaxy/galaxy.panels.mako Log Message: ----------- UI, Tools: remove handlebars path alias for requirejs from mako templates Commit: 3327bb9316a6c3dcebacdc3b87cf97e9dd789515 https://github.com/galaxyproject/galaxy/commit/3327bb9316a6c3dcebacdc3b87cf… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-01-19 (Tue, 19 Jan 2016) Changed paths: M client/GruntFile.js M client/README.md M client/bower.json R client/grunt-tasks/templates.js M client/package.json M client/webpack.config.js Log Message: ----------- Client build: remove handlebars infrastructure Commit: 4ea5f15edde00b0b5ca467d870cc14cf581447a8 https://github.com/galaxyproject/galaxy/commit/4ea5f15edde00b0b5ca467d870cc… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-01-19 (Tue, 19 Jan 2016) Changed paths: M config/plugins/visualizations/scatterplot/Gruntfile.js M config/plugins/visualizations/scatterplot/package.json R config/plugins/visualizations/scatterplot/src/handlebars/chartcontrol.handlebars R config/plugins/visualizations/scatterplot/src/handlebars/datacontrol.handlebars R config/plugins/visualizations/scatterplot/src/handlebars/editor.handlebars M config/plugins/visualizations/scatterplot/src/scatterplot-config-editor.js M config/plugins/visualizations/scatterplot/static/scatterplot-edit.js Log Message: ----------- Scatterplot: remove handlebars by converting to underscore, remove grunt handlebars task Commit: 3b63341461d19b6afc4987d4fbe94142cd8bcc2a https://github.com/galaxyproject/galaxy/commit/3b63341461d19b6afc4987d4fbe9… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-01-19 (Tue, 19 Jan 2016) Changed paths: R client/galaxy/scripts/libs/handlebars.runtime.js M client/grunt-tasks/install-libs.js Log Message: ----------- UI: remove handlebars library Commit: bf459c8d55ba7c3c895fbf169b203b37a8c829fd https://github.com/galaxyproject/galaxy/commit/bf459c8d55ba7c3c895fbf169b20… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-01-19 (Tue, 19 Jan 2016) Changed paths: M client/galaxy/scripts/mvc/tool/tools.js M client/galaxy/scripts/onload.js M config/plugins/visualizations/scatterplot/templates/scatterplot.mako R static/maps/libs/handlebars.runtime.js.map R static/scripts/libs/handlebars.runtime.js M templates/webapps/galaxy/visualization/sweepster.mako Log Message: ----------- UI: (cleaning up) remove handlebars compiled/map and remaining references Commit: 7dba828632cb6cec10066eb9f6a4c8e41a811948 https://github.com/galaxyproject/galaxy/commit/7dba828632cb6cec10066eb9f6a4… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-01-19 (Tue, 19 Jan 2016) Changed paths: M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/apps/tool-panel.js M client/galaxy/scripts/mvc/tool/tools.js M client/galaxy/style/less/base.less M client/grunt-tasks/style.js M lib/galaxy/webapps/galaxy/controllers/root.py M static/maps/mvc/tool/tools.js.map M static/maps/onload.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/tool/tools.js M static/scripts/onload.js M static/style/blue/base.css Log Message: ----------- UI, Tool form: replace spinner gif with font awesome icon Commit: fe6d22e1a7e4e6d38b15f4128554783765bc69a1 https://github.com/galaxyproject/galaxy/commit/fe6d22e1a7e4e6d38b15f4128554… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-01-19 (Tue, 19 Jan 2016) Changed paths: M client/GruntFile.js M client/README.md M client/bower.json M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/apps/tool-panel.js R client/galaxy/scripts/libs/handlebars.runtime.js M client/galaxy/scripts/mvc/tool/tools.js M client/galaxy/scripts/onload.js R client/galaxy/scripts/templates/compiled/panel_section.js R client/galaxy/scripts/templates/compiled/tool_form.js R client/galaxy/scripts/templates/compiled/tool_link.js R client/galaxy/scripts/templates/compiled/tool_search.js R client/galaxy/scripts/templates/panel_section.handlebars R client/galaxy/scripts/templates/tool_form.handlebars R client/galaxy/scripts/templates/tool_link.handlebars R client/galaxy/scripts/templates/tool_search.handlebars M client/galaxy/style/less/base.less M client/grunt-tasks/install-libs.js M client/grunt-tasks/style.js R client/grunt-tasks/templates.js M client/package.json M client/webpack.config.js M config/plugins/visualizations/scatterplot/Gruntfile.js M config/plugins/visualizations/scatterplot/package.json R config/plugins/visualizations/scatterplot/src/handlebars/chartcontrol.handlebars R config/plugins/visualizations/scatterplot/src/handlebars/datacontrol.handlebars R config/plugins/visualizations/scatterplot/src/handlebars/editor.handlebars M config/plugins/visualizations/scatterplot/src/scatterplot-config-editor.js M config/plugins/visualizations/scatterplot/static/scatterplot-edit.js M config/plugins/visualizations/scatterplot/templates/scatterplot.mako M lib/galaxy/webapps/galaxy/controllers/root.py R static/maps/libs/handlebars.runtime.js.map M static/maps/mvc/tool/tools.js.map M static/maps/onload.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map R static/scripts/libs/handlebars.runtime.js M static/scripts/mvc/tool/tools.js M static/scripts/onload.js R static/scripts/templates/compiled/panel_section.js R static/scripts/templates/compiled/tool_form.js R static/scripts/templates/compiled/tool_link.js R static/scripts/templates/compiled/tool_search.js M static/style/blue/base.css M templates/base/base_panels.mako M templates/webapps/galaxy/galaxy.panels.mako M templates/webapps/galaxy/visualization/sweepster.mako Log Message: ----------- Merge pull request #1537 from carlfeberhard/handlebars.removal Remove handlebars and rely solely on underscore templates Compare: https://github.com/galaxyproject/galaxy/compare/f0cdb52f6416...fe6d22e1a7e4

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[galaxyproject/usegalaxy-playbook] 9eba35: rename duplex novo to du novo
by GitHub 19 Jan '16

19 Jan '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 9eba3573c0df6ac6ea20db6de8ae6acf28f60883 https://github.com/galaxyproject/usegalaxy-playbook/commit/9eba3573c0df6ac6… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-01-19 (Tue, 19 Jan 2016) Changed paths: M files/galaxy/usegalaxy.org/var/integrated_tool_panel.xml M files/galaxy/usegalaxy.org/var/shed_tool_conf.xml Log Message: ----------- rename duplex novo to du novo

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[galaxyproject/galaxy] 27ee03: Add js for mako based masthead
by GitHub 19 Jan '16

19 Jan '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 27ee036c69c3212743690c2d03699dc68f002388 https://github.com/galaxyproject/galaxy/commit/27ee036c69c3212743690c2d0369… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-01-19 (Tue, 19 Jan 2016) Changed paths: M templates/webapps/tool_shed/base_panels.mako Log Message: ----------- Add js for mako based masthead Commit: f0cdb52f641666afe2d2721493a6c0b7098106e3 https://github.com/galaxyproject/galaxy/commit/f0cdb52f641666afe2d2721493a6… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-01-19 (Tue, 19 Jan 2016) Changed paths: M templates/webapps/tool_shed/base_panels.mako Log Message: ----------- Merge pull request #1533 from guerler/fix_toolshed_000 Add js for mako based masthead Compare: https://github.com/galaxyproject/galaxy/compare/10f7c9016445...f0cdb52f6416

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[galaxyproject/usegalaxy-playbook] 779075: Increase memory/cores for align families tool
by GitHub 19 Jan '16

19 Jan '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 779075f34dc649df6b8c8f472fb758d0c3fb4f5d https://github.com/galaxyproject/usegalaxy-playbook/commit/779075f34dc649df… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-01-19 (Tue, 19 Jan 2016) Changed paths: M templates/galaxy/usegalaxy.org/config/job_conf.xml.j2 Log Message: ----------- Increase memory/cores for align families tool

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[galaxyproject/galaxy] 313c6a: Client-build, Webpack: add tasks to grunt for the ...
by GitHub 18 Jan '16

18 Jan '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 313c6a7247cedad288eab7879bc4ba162eff12ac https://github.com/galaxyproject/galaxy/commit/313c6a7247cedad288eab7879bc4… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-01-15 (Fri, 15 Jan 2016) Changed paths: M client/GruntFile.js M client/README.md M client/grunt-tasks/install-libs.js M client/package.json M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Client-build, Webpack: add tasks to grunt for the common webpack tasks, update readme Commit: 9f8cc9a13fa09390fb92291a33469f79ee49f889 https://github.com/galaxyproject/galaxy/commit/9f8cc9a13fa09390fb92291a3346… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-01-15 (Fri, 15 Jan 2016) Changed paths: M .gitignore M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/mvc/base-mvc.js M client/galaxy/scripts/mvc/collection/collection-li-edit.js M client/galaxy/scripts/mvc/collection/collection-li.js M client/galaxy/scripts/mvc/collection/collection-model.js M client/galaxy/scripts/mvc/collection/collection-view-edit.js M client/galaxy/scripts/mvc/collection/collection-view.js M client/galaxy/scripts/mvc/collection/list-collection-creator.js M client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js M client/galaxy/scripts/mvc/collection/pair-collection-creator.js M client/galaxy/scripts/mvc/dataset/dataset-choice.js M client/galaxy/scripts/mvc/dataset/dataset-li-edit.js M client/galaxy/scripts/mvc/dataset/dataset-li.js M client/galaxy/scripts/mvc/dataset/dataset-list.js M client/galaxy/scripts/mvc/dataset/dataset-model.js M client/galaxy/scripts/mvc/dataset/states.js M client/galaxy/scripts/mvc/form/form-data.js M client/galaxy/scripts/mvc/form/form-input.js M client/galaxy/scripts/mvc/form/form-parameters.js M client/galaxy/scripts/mvc/form/form-repeat.js M client/galaxy/scripts/mvc/form/form-view.js M client/galaxy/scripts/mvc/history/copy-dialog.js M client/galaxy/scripts/mvc/history/hda-li-edit.js M client/galaxy/scripts/mvc/history/hda-li.js M client/galaxy/scripts/mvc/history/hda-model.js M client/galaxy/scripts/mvc/history/hdca-li-edit.js M client/galaxy/scripts/mvc/history/hdca-li.js M client/galaxy/scripts/mvc/history/hdca-model.js M client/galaxy/scripts/mvc/history/history-content-model.js M client/galaxy/scripts/mvc/history/history-contents.js M client/galaxy/scripts/mvc/history/history-model.js M client/galaxy/scripts/mvc/history/history-structure-view.js M client/galaxy/scripts/mvc/history/history-view-annotated.js M client/galaxy/scripts/mvc/history/history-view-edit-current.js M client/galaxy/scripts/mvc/history/history-view-edit.js M client/galaxy/scripts/mvc/history/history-view.js M client/galaxy/scripts/mvc/history/job-dag.js M client/galaxy/scripts/mvc/history/multi-panel.js M client/galaxy/scripts/mvc/history/options-menu.js M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js M client/galaxy/scripts/mvc/list/list-item.js M client/galaxy/scripts/mvc/list/list-view.js M client/galaxy/scripts/mvc/tool/tool-form-base.js M client/galaxy/scripts/mvc/tool/tool-form-workflow.js M client/galaxy/scripts/mvc/ui/ui-list.js M client/galaxy/scripts/mvc/ui/ui-misc.js M client/galaxy/scripts/mvc/upload/default/default-row.js M client/galaxy/scripts/mvc/upload/upload-settings.js M client/galaxy/scripts/mvc/user/user-model.js M client/galaxy/scripts/mvc/user/user-quotameter.js M client/galaxy/scripts/mvc/workflow/workflow-view.js M client/galaxy/scripts/utils/utils.js M client/galaxy/style/less/ui.less M client/galaxy/style/less/upload.less A client/grunt-tasks/webpack.js M config/galaxy.ini.sample R config/plugins/interactive_environments/ipython/config/ipython.ini.sample R config/plugins/interactive_environments/ipython/config/ipython.xml R config/plugins/interactive_environments/ipython/static/js/ipython.js R config/plugins/interactive_environments/ipython/templates/ipython.mako R config/plugins/interactive_environments/ipython/templates/notebook.ipynb M config/plugins/tours/core.galaxy_ui.yaml M config/plugins/tours/core.history.yaml A config/plugins/tours/core.scratchbook.yaml R config/plugins/visualizations/charts/static/build-app.js M lib/galaxy/config.py M lib/galaxy/datatypes/tabular.py A lib/galaxy/dependencies/pinned-hashed-requirements.txt M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/command_factory.py M lib/galaxy/jobs/runners/__init__.py M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh M lib/galaxy/jobs/runners/util/job_script/__init__.py M lib/galaxy/managers/rbac_secured.py M lib/galaxy/model/__init__.py M lib/galaxy/model/custom_types.py M lib/galaxy/model/migrate/versions/0052_sample_dataset_table.py M lib/galaxy/model/migrate/versions/0065_add_name_to_form_fields_and_values.py M lib/galaxy/model/migrate/versions/0067_populate_sequencer_table.py M lib/galaxy/tools/__init__.py M lib/galaxy/tools/actions/__init__.py M lib/galaxy/tools/actions/upload_common.py M lib/galaxy/tools/cwl/cwltool_deps.py M lib/galaxy/tools/deps/resolvers/__init__.py M lib/galaxy/tools/deps/resolvers/conda.py M lib/galaxy/tools/parameters/basic.py M lib/galaxy/tools/parameters/output_collect.py M lib/galaxy/tools/parser/output_actions.py M lib/galaxy/tools/parser/output_collection_def.py M lib/galaxy/tools/test.py M lib/galaxy/tools/toolbox/base.py M lib/galaxy/tools/toolbox/panel.py M lib/galaxy/tools/toolbox/watcher.py M lib/galaxy/tools/wrappers.py M lib/galaxy/util/object_wrapper.py M lib/galaxy/util/pastescript/loadwsgi.py M lib/galaxy/visualization/genomes.py M lib/galaxy/web/framework/openid_manager.py M lib/galaxy/web/framework/webapp.py M lib/galaxy/webapps/galaxy/api/lda_datasets.py M lib/galaxy/webapps/galaxy/api/remote_files.py M lib/galaxy/webapps/galaxy/controllers/library_common.py M lib/galaxy/webapps/galaxy/controllers/user.py M lib/galaxy/workflow/extract.py M lib/pulsar/client/amqp_exchange.py M requirements.txt M run.sh M run_tests.sh M scripts/binary_compatibility.py M scripts/cleanup_datasets/admin_cleanup_datasets.py M scripts/common_startup.sh M static/maps/layout/menu.js.map M static/maps/mvc/base-mvc.js.map M static/maps/mvc/collection/collection-li-edit.js.map M static/maps/mvc/collection/collection-li.js.map M static/maps/mvc/collection/collection-model.js.map M static/maps/mvc/collection/collection-view-edit.js.map M static/maps/mvc/collection/collection-view.js.map M static/maps/mvc/collection/list-collection-creator.js.map M static/maps/mvc/collection/list-of-pairs-collection-creator.js.map M static/maps/mvc/collection/pair-collection-creator.js.map M static/maps/mvc/dataset/dataset-choice.js.map M static/maps/mvc/dataset/dataset-li-edit.js.map M static/maps/mvc/dataset/dataset-li.js.map M static/maps/mvc/dataset/dataset-list.js.map M static/maps/mvc/dataset/dataset-model.js.map M static/maps/mvc/dataset/states.js.map M static/maps/mvc/form/form-data.js.map M static/maps/mvc/form/form-input.js.map M static/maps/mvc/form/form-parameters.js.map M static/maps/mvc/form/form-repeat.js.map M static/maps/mvc/form/form-view.js.map M static/maps/mvc/history/copy-dialog.js.map M static/maps/mvc/history/hda-li-edit.js.map M static/maps/mvc/history/hda-li.js.map M static/maps/mvc/history/hda-model.js.map M static/maps/mvc/history/hdca-li-edit.js.map M static/maps/mvc/history/hdca-li.js.map M static/maps/mvc/history/hdca-model.js.map M static/maps/mvc/history/history-content-model.js.map M static/maps/mvc/history/history-contents.js.map M static/maps/mvc/history/history-model.js.map M static/maps/mvc/history/history-structure-view.js.map M static/maps/mvc/history/history-view-annotated.js.map M static/maps/mvc/history/history-view-edit-current.js.map M static/maps/mvc/history/history-view-edit.js.map M static/maps/mvc/history/history-view.js.map M static/maps/mvc/history/job-dag.js.map M static/maps/mvc/history/multi-panel.js.map M static/maps/mvc/history/options-menu.js.map M static/maps/mvc/library/library-foldertoolbar-view.js.map M static/maps/mvc/list/list-item.js.map M static/maps/mvc/list/list-view.js.map M static/maps/mvc/tool/tool-form-workflow.js.map M static/maps/mvc/ui/ui-list.js.map M static/maps/mvc/ui/ui-misc.js.map M static/maps/mvc/upload/default/default-row.js.map M static/maps/mvc/upload/upload-settings.js.map M static/maps/mvc/user/user-model.js.map M static/maps/mvc/user/user-quotameter.js.map M static/maps/mvc/workflow/workflow-view.js.map M static/maps/utils/utils.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js M static/scripts/mvc/base-mvc.js M static/scripts/mvc/collection/collection-li-edit.js M static/scripts/mvc/collection/collection-li.js M static/scripts/mvc/collection/collection-model.js M static/scripts/mvc/collection/collection-view-edit.js M static/scripts/mvc/collection/collection-view.js M static/scripts/mvc/collection/list-collection-creator.js M static/scripts/mvc/collection/list-of-pairs-collection-creator.js M static/scripts/mvc/collection/pair-collection-creator.js M static/scripts/mvc/dataset/dataset-choice.js M static/scripts/mvc/dataset/dataset-li-edit.js M static/scripts/mvc/dataset/dataset-li.js M static/scripts/mvc/dataset/dataset-list.js M static/scripts/mvc/dataset/dataset-model.js M static/scripts/mvc/dataset/states.js M static/scripts/mvc/form/form-data.js M static/scripts/mvc/form/form-input.js M static/scripts/mvc/form/form-parameters.js M static/scripts/mvc/form/form-repeat.js M static/scripts/mvc/form/form-view.js M static/scripts/mvc/history/hda-li-edit.js M 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static/scripts/mvc/upload/default/default-row.js M static/scripts/mvc/upload/upload-settings.js M static/scripts/mvc/user/user-model.js M static/scripts/mvc/user/user-quotameter.js M static/scripts/mvc/workflow/workflow-view.js M static/scripts/utils/utils.js M static/style/blue/base.css M templates/webapps/reports/jobs_errors_per_tool.mako M templates/webapps/reports/jobs_per_month_all.mako M templates/webapps/reports/jobs_per_month_in_error.mako M templates/webapps/reports/jobs_per_tool.mako M templates/webapps/reports/jobs_per_user.mako M templates/webapps/reports/jobs_specified_month_all.mako M templates/webapps/reports/jobs_specified_month_in_error.mako M templates/webapps/reports/jobs_tool_per_month.mako M templates/webapps/reports/jobs_user_per_month.mako M templates/webapps/reports/registered_users_per_month.mako M templates/webapps/reports/requests_user_per_month.mako M templates/webapps/reports/users_last_access_date.mako M templates/webapps/reports/users_user_disk_usage.mako M templates/webapps/reports/workflows_per_month_all.mako M templates/webapps/reports/workflows_per_user.mako M templates/webapps/reports/workflows_per_workflow.mako M templates/webapps/reports/workflows_user_per_month.mako M test/api/helpers.py M test/api/test_tools.py M test/casperjs/casperjs_runner.py M test/casperjs/modules/user.js M test/functional/test_toolbox.py M test/functional/tools/output_action_change_format.xml M test/qunit/tests/masthead_tests.js A test/qunit/tests/ui_tests.html A test/qunit/tests/ui_tests.js M test/unit/jobs/test_command_factory.py M test/unit/jobs/test_runner_local.py M test/unit/tools/test_collect_primary_datasets.py M test/unit/tools/test_execution.py M test/unit/unittest_utils/galaxy_mock.py A test/unit/web/framework/__init__.py A test/unit/web/framework/test_webapp.py Log Message: ----------- Client-build: add the webpack task file, merge dev Commit: 10f7c901644519d2968b21bf843cb08acc9b489b https://github.com/galaxyproject/galaxy/commit/10f7c901644519d2968b21bf843c… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-18 (Mon, 18 Jan 2016) Changed paths: M client/GruntFile.js M client/README.md M client/grunt-tasks/install-libs.js A client/grunt-tasks/webpack.js M client/package.json M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Merge pull request #1523 from carlfeberhard/grunt-webpack Client-build, Webpack: add tasks to grunt for the common webpack tasks, update readme Compare: https://github.com/galaxyproject/galaxy/compare/91f1a65cb149...10f7c9016445

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[galaxyproject/usegalaxy-playbook] 445a57: Swapped in PIA as the featured public Galaxy serve...
by GitHub 18 Jan '16

18 Jan '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 445a57258649167b0cba42ecdb6d5a914b9e5409 https://github.com/galaxyproject/usegalaxy-playbook/commit/445a57258649167b… Author: tnabtaf <clements(a)galaxyproject.org> Date: 2016-01-18 (Mon, 18 Jan 2016) Changed paths: A files/galaxy/common/static/welcome_img/PIAGalaxy.png M templates/galaxy/common/static/welcome.html.j2 Log Message: ----------- Swapped in PIA as the featured public Galaxy server.

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[galaxyproject/galaxy] fc434d: Handle unvalidated values in depth
by GitHub 16 Jan '16

16 Jan '16

Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: fc434d62e971df92bc51b296d119030ca85af303 https://github.com/galaxyproject/galaxy/commit/fc434d62e971df92bc51b296d119… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-01-15 (Fri, 15 Jan 2016) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Handle unvalidated values in depth Commit: 16e0bc08c8333c75c05a1a47de57eed8196bf9d9 https://github.com/galaxyproject/galaxy/commit/16e0bc08c8333c75c05a1a47de57… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-15 (Fri, 15 Jan 2016) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Merge pull request #1526 from guerler/fix_unvalidated_001 [16.01] Handle unvalidated values in depth Compare: https://github.com/galaxyproject/galaxy/compare/a77403cc9e6e...16e0bc08c833

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[galaxyproject/galaxy] 0e9302: sourcing Conda will write to stderr, we need to re...
by GitHub 16 Jan '16

16 Jan '16

Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: 0e9302127f4478611170dee237d811e072100e99 https://github.com/galaxyproject/galaxy/commit/0e9302127f4478611170dee237d8… Author: Bjoern Gruening <bjoern.gruening(a)gmail.com> Date: 2016-01-16 (Sat, 16 Jan 2016) Changed paths: M lib/galaxy/tools/deps/resolvers/conda.py Log Message: ----------- sourcing Conda will write to stderr, we need to redirect it to stdout Commit: a77403cc9e6ef2d90ba78822afca601eed09e6ec https://github.com/galaxyproject/galaxy/commit/a77403cc9e6ef2d90ba78822afca… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-01-15 (Fri, 15 Jan 2016) Changed paths: M lib/galaxy/tools/deps/resolvers/conda.py Log Message: ----------- Merge pull request #1527 from bgruening/release_16.01 Sourcing Conda will write to stderr Compare: https://github.com/galaxyproject/galaxy/compare/817f36626d7e...a77403cc9e6e

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[galaxyproject/galaxy] adb577: UI: use strict and replace leaky uses of Backbone....
by GitHub 15 Jan '16

15 Jan '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: adb577e7f85d981c2877452e0915eb0ed509655e https://github.com/galaxyproject/galaxy/commit/adb577e7f85d981c2877452e0915… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-01-12 (Tue, 12 Jan 2016) Changed paths: M client/galaxy/scripts/mvc/base-mvc.js M client/galaxy/scripts/mvc/collection/collection-li-edit.js M client/galaxy/scripts/mvc/collection/collection-li.js M client/galaxy/scripts/mvc/collection/collection-model.js M client/galaxy/scripts/mvc/collection/collection-view-edit.js M client/galaxy/scripts/mvc/collection/collection-view.js M client/galaxy/scripts/mvc/collection/list-collection-creator.js M client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js M client/galaxy/scripts/mvc/collection/pair-collection-creator.js M client/galaxy/scripts/mvc/dataset/dataset-choice.js M client/galaxy/scripts/mvc/dataset/dataset-li-edit.js M client/galaxy/scripts/mvc/dataset/dataset-li.js M 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static/scripts/mvc/dataset/dataset-list.js M static/scripts/mvc/dataset/dataset-model.js M static/scripts/mvc/dataset/states.js M static/scripts/mvc/history/hda-li-edit.js M static/scripts/mvc/history/hda-li.js M static/scripts/mvc/history/hda-model.js M static/scripts/mvc/history/hdca-li-edit.js M static/scripts/mvc/history/hdca-li.js M static/scripts/mvc/history/hdca-model.js M static/scripts/mvc/history/history-content-model.js M static/scripts/mvc/history/history-contents.js M static/scripts/mvc/history/history-model.js M static/scripts/mvc/history/history-structure-view.js M static/scripts/mvc/history/history-view-annotated.js M static/scripts/mvc/history/history-view-edit-current.js M static/scripts/mvc/history/history-view-edit.js M static/scripts/mvc/history/history-view.js M static/scripts/mvc/history/job-dag.js M static/scripts/mvc/history/multi-panel.js M static/scripts/mvc/list/list-item.js M static/scripts/mvc/list/list-view.js M static/scripts/mvc/user/user-model.js M static/scripts/mvc/user/user-quotameter.js Log Message: ----------- UI: use strict and replace leaky uses of Backbone.Events.on with listenTo Commit: d5d39ed85cb96a70ae739cd5210859ee2153dcc5 https://github.com/galaxyproject/galaxy/commit/d5d39ed85cb96a70ae739cd52108… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-01-15 (Fri, 15 Jan 2016) Changed paths: M .gitignore M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/mvc/collection/list-collection-creator.js M client/galaxy/scripts/mvc/form/form-data.js M client/galaxy/scripts/mvc/form/form-input.js M client/galaxy/scripts/mvc/form/form-parameters.js M client/galaxy/scripts/mvc/form/form-repeat.js M client/galaxy/scripts/mvc/form/form-view.js M client/galaxy/scripts/mvc/history/history-view-edit.js M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js M client/galaxy/scripts/mvc/tool/tool-form-base.js M client/galaxy/scripts/mvc/tool/tool-form-workflow.js M client/galaxy/scripts/mvc/ui/ui-list.js M client/galaxy/scripts/mvc/ui/ui-misc.js M client/galaxy/scripts/mvc/upload/default/default-row.js M client/galaxy/scripts/mvc/upload/upload-settings.js M client/galaxy/scripts/mvc/workflow/workflow-view.js M client/galaxy/scripts/utils/utils.js M client/galaxy/style/less/ui.less M client/galaxy/style/less/upload.less M config/galaxy.ini.sample R config/plugins/interactive_environments/ipython/config/ipython.ini.sample R config/plugins/interactive_environments/ipython/config/ipython.xml R config/plugins/interactive_environments/ipython/static/js/ipython.js R config/plugins/interactive_environments/ipython/templates/ipython.mako R config/plugins/interactive_environments/ipython/templates/notebook.ipynb M config/plugins/tours/core.galaxy_ui.yaml M config/plugins/tours/core.history.yaml A config/plugins/tours/core.scratchbook.yaml R config/plugins/visualizations/charts/static/build-app.js M lib/galaxy/config.py M lib/galaxy/datatypes/tabular.py A 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scripts/binary_compatibility.py M scripts/cleanup_datasets/admin_cleanup_datasets.py M scripts/common_startup.sh M static/maps/layout/menu.js.map M static/maps/mvc/collection/list-collection-creator.js.map M static/maps/mvc/form/form-data.js.map M static/maps/mvc/form/form-input.js.map M static/maps/mvc/form/form-parameters.js.map M static/maps/mvc/form/form-repeat.js.map M static/maps/mvc/form/form-view.js.map M static/maps/mvc/history/history-view-edit.js.map M static/maps/mvc/library/library-foldertoolbar-view.js.map M static/maps/mvc/tool/tool-form-workflow.js.map M static/maps/mvc/ui/ui-list.js.map M static/maps/mvc/ui/ui-misc.js.map M static/maps/mvc/upload/default/default-row.js.map M static/maps/mvc/upload/upload-settings.js.map M static/maps/mvc/workflow/workflow-view.js.map M static/maps/utils/utils.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js M static/scripts/mvc/collection/list-collection-creator.js M static/scripts/mvc/form/form-data.js M static/scripts/mvc/form/form-input.js M static/scripts/mvc/form/form-parameters.js M static/scripts/mvc/form/form-repeat.js M static/scripts/mvc/form/form-view.js M static/scripts/mvc/history/history-view-edit.js M static/scripts/mvc/library/library-foldertoolbar-view.js M static/scripts/mvc/tool/tool-form-workflow.js M static/scripts/mvc/ui/ui-list.js M static/scripts/mvc/ui/ui-misc.js M static/scripts/mvc/upload/default/default-row.js M static/scripts/mvc/upload/upload-settings.js M static/scripts/mvc/workflow/workflow-view.js M static/scripts/utils/utils.js M static/style/blue/base.css M templates/webapps/reports/jobs_errors_per_tool.mako M templates/webapps/reports/jobs_per_month_all.mako M templates/webapps/reports/jobs_per_month_in_error.mako M templates/webapps/reports/jobs_per_tool.mako M templates/webapps/reports/jobs_per_user.mako M templates/webapps/reports/jobs_specified_month_all.mako M templates/webapps/reports/jobs_specified_month_in_error.mako M templates/webapps/reports/jobs_tool_per_month.mako M templates/webapps/reports/jobs_user_per_month.mako M templates/webapps/reports/registered_users_per_month.mako M templates/webapps/reports/requests_user_per_month.mako M templates/webapps/reports/users_last_access_date.mako M templates/webapps/reports/users_user_disk_usage.mako M templates/webapps/reports/workflows_per_month_all.mako M templates/webapps/reports/workflows_per_user.mako M templates/webapps/reports/workflows_per_workflow.mako M templates/webapps/reports/workflows_user_per_month.mako M test/api/helpers.py M test/api/test_tools.py M test/casperjs/casperjs_runner.py M test/casperjs/modules/user.js M test/functional/test_toolbox.py M test/functional/tools/output_action_change_format.xml M test/qunit/tests/masthead_tests.js A test/qunit/tests/ui_tests.html A test/qunit/tests/ui_tests.js M test/unit/jobs/test_command_factory.py M test/unit/jobs/test_runner_local.py M test/unit/tools/test_collect_primary_datasets.py M test/unit/tools/test_execution.py M test/unit/unittest_utils/galaxy_mock.py A test/unit/web/framework/__init__.py A test/unit/web/framework/test_webapp.py Log Message: ----------- (merge dev) Commit: 91f1a65cb1495993355c473e858195ae07a6f3b7 https://github.com/galaxyproject/galaxy/commit/91f1a65cb1495993355c473e8581… Author: Aysam Guerler <aysam.guerler(a)gmail.com> Date: 2016-01-15 (Fri, 15 Jan 2016) Changed paths: M client/galaxy/scripts/mvc/base-mvc.js M client/galaxy/scripts/mvc/collection/collection-li-edit.js M client/galaxy/scripts/mvc/collection/collection-li.js M client/galaxy/scripts/mvc/collection/collection-model.js M client/galaxy/scripts/mvc/collection/collection-view-edit.js M client/galaxy/scripts/mvc/collection/collection-view.js M client/galaxy/scripts/mvc/collection/list-collection-creator.js M client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js M client/galaxy/scripts/mvc/collection/pair-collection-creator.js M client/galaxy/scripts/mvc/dataset/dataset-choice.js M client/galaxy/scripts/mvc/dataset/dataset-li-edit.js M client/galaxy/scripts/mvc/dataset/dataset-li.js M client/galaxy/scripts/mvc/dataset/dataset-list.js M client/galaxy/scripts/mvc/dataset/dataset-model.js M client/galaxy/scripts/mvc/dataset/states.js M client/galaxy/scripts/mvc/history/copy-dialog.js M client/galaxy/scripts/mvc/history/hda-li-edit.js M client/galaxy/scripts/mvc/history/hda-li.js M client/galaxy/scripts/mvc/history/hda-model.js M client/galaxy/scripts/mvc/history/hdca-li-edit.js M client/galaxy/scripts/mvc/history/hdca-li.js M client/galaxy/scripts/mvc/history/hdca-model.js M client/galaxy/scripts/mvc/history/history-content-model.js M client/galaxy/scripts/mvc/history/history-contents.js M client/galaxy/scripts/mvc/history/history-model.js M client/galaxy/scripts/mvc/history/history-structure-view.js M client/galaxy/scripts/mvc/history/history-view-annotated.js M client/galaxy/scripts/mvc/history/history-view-edit-current.js M client/galaxy/scripts/mvc/history/history-view-edit.js M client/galaxy/scripts/mvc/history/history-view.js M client/galaxy/scripts/mvc/history/job-dag.js M client/galaxy/scripts/mvc/history/multi-panel.js M client/galaxy/scripts/mvc/history/options-menu.js M client/galaxy/scripts/mvc/list/list-item.js M client/galaxy/scripts/mvc/list/list-view.js M client/galaxy/scripts/mvc/user/user-model.js M client/galaxy/scripts/mvc/user/user-quotameter.js M static/maps/mvc/base-mvc.js.map M static/maps/mvc/collection/collection-li-edit.js.map M static/maps/mvc/collection/collection-li.js.map M static/maps/mvc/collection/collection-model.js.map M static/maps/mvc/collection/collection-view-edit.js.map M static/maps/mvc/collection/collection-view.js.map M static/maps/mvc/collection/list-collection-creator.js.map M static/maps/mvc/collection/list-of-pairs-collection-creator.js.map M static/maps/mvc/collection/pair-collection-creator.js.map M static/maps/mvc/dataset/dataset-choice.js.map M static/maps/mvc/dataset/dataset-li-edit.js.map M static/maps/mvc/dataset/dataset-li.js.map M static/maps/mvc/dataset/dataset-list.js.map M static/maps/mvc/dataset/dataset-model.js.map M static/maps/mvc/dataset/states.js.map M static/maps/mvc/history/copy-dialog.js.map M static/maps/mvc/history/hda-li-edit.js.map M static/maps/mvc/history/hda-li.js.map M static/maps/mvc/history/hda-model.js.map M static/maps/mvc/history/hdca-li-edit.js.map M static/maps/mvc/history/hdca-li.js.map M static/maps/mvc/history/hdca-model.js.map M static/maps/mvc/history/history-content-model.js.map M static/maps/mvc/history/history-contents.js.map M static/maps/mvc/history/history-model.js.map M static/maps/mvc/history/history-structure-view.js.map M static/maps/mvc/history/history-view-annotated.js.map M static/maps/mvc/history/history-view-edit-current.js.map M static/maps/mvc/history/history-view-edit.js.map M static/maps/mvc/history/history-view.js.map M static/maps/mvc/history/job-dag.js.map M static/maps/mvc/history/multi-panel.js.map M static/maps/mvc/history/options-menu.js.map M static/maps/mvc/list/list-item.js.map M static/maps/mvc/list/list-view.js.map M static/maps/mvc/user/user-model.js.map M static/maps/mvc/user/user-quotameter.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/base-mvc.js M static/scripts/mvc/collection/collection-li-edit.js M static/scripts/mvc/collection/collection-li.js M static/scripts/mvc/collection/collection-model.js M static/scripts/mvc/collection/collection-view-edit.js M static/scripts/mvc/collection/collection-view.js M static/scripts/mvc/collection/list-collection-creator.js M static/scripts/mvc/collection/list-of-pairs-collection-creator.js M static/scripts/mvc/collection/pair-collection-creator.js M static/scripts/mvc/dataset/dataset-choice.js M static/scripts/mvc/dataset/dataset-li-edit.js M static/scripts/mvc/dataset/dataset-li.js M static/scripts/mvc/dataset/dataset-list.js M static/scripts/mvc/dataset/dataset-model.js M static/scripts/mvc/dataset/states.js M static/scripts/mvc/history/hda-li-edit.js M static/scripts/mvc/history/hda-li.js M static/scripts/mvc/history/hda-model.js M static/scripts/mvc/history/hdca-li-edit.js M static/scripts/mvc/history/hdca-li.js M static/scripts/mvc/history/hdca-model.js M static/scripts/mvc/history/history-content-model.js M static/scripts/mvc/history/history-contents.js M static/scripts/mvc/history/history-model.js M static/scripts/mvc/history/history-structure-view.js M static/scripts/mvc/history/history-view-annotated.js M static/scripts/mvc/history/history-view-edit-current.js M static/scripts/mvc/history/history-view-edit.js M static/scripts/mvc/history/history-view.js M static/scripts/mvc/history/job-dag.js M static/scripts/mvc/history/multi-panel.js M static/scripts/mvc/list/list-item.js M static/scripts/mvc/list/list-view.js M static/scripts/mvc/user/user-model.js M static/scripts/mvc/user/user-quotameter.js Log Message: ----------- Merge pull request #1522 from carlfeberhard/history.iteration History UI: clean up. Compare: https://github.com/galaxyproject/galaxy/compare/49a72dacc678...91f1a65cb149

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[galaxyproject/galaxy] 5d5dfb: Revise ui-misc
by GitHub 15 Jan '16

15 Jan '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 5d5dfb5f647bc4f6c6f97d37da5b60c7638cb262 https://github.com/galaxyproject/galaxy/commit/5d5dfb5f647bc4f6c6f97d37da5b… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-01-14 (Thu, 14 Jan 2016) Changed paths: M client/galaxy/scripts/mvc/ui/ui-misc.js M static/maps/mvc/ui/ui-misc.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-misc.js Log Message: ----------- Revise ui-misc Commit: 2db99b1d6be13fe2bcd79ef0787d9898676d2b1c https://github.com/galaxyproject/galaxy/commit/2db99b1d6be13fe2bcd79ef0787d… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-01-14 (Thu, 14 Jan 2016) Changed paths: A test/qunit/tests/ui_tests.html A test/qunit/tests/ui_tests.js Log Message: ----------- Add test cases Commit: 5d22fa7dd9bcdcd985404dad0914f05b360ce248 https://github.com/galaxyproject/galaxy/commit/5d22fa7dd9bcdcd985404dad0914… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-01-14 (Thu, 14 Jan 2016) Changed paths: M client/galaxy/scripts/mvc/form/form-view.js M client/galaxy/scripts/mvc/ui/ui-list.js M client/galaxy/scripts/mvc/ui/ui-misc.js M client/galaxy/style/less/ui.less M static/maps/mvc/form/form-view.js.map M static/maps/mvc/ui/ui-list.js.map M static/maps/mvc/ui/ui-misc.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/form/form-view.js M static/scripts/mvc/ui/ui-list.js M static/scripts/mvc/ui/ui-misc.js M static/style/blue/base.css M test/qunit/tests/ui_tests.js Log Message: ----------- Fix message styles and fading Commit: b015d77e7bc1b049fde9dbe8bcb7f08cb784c2d2 https://github.com/galaxyproject/galaxy/commit/b015d77e7bc1b049fde9dbe8bcb7… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-01-14 (Thu, 14 Jan 2016) Changed paths: M test/qunit/tests/ui_tests.js Log Message: ----------- Fix test label Commit: 907ce6efd246344bf8268dae781e3bc070a5bc73 https://github.com/galaxyproject/galaxy/commit/907ce6efd246344bf8268dae781e… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-01-14 (Thu, 14 Jan 2016) Changed paths: M client/galaxy/scripts/mvc/ui/ui-misc.js M static/maps/mvc/ui/ui-misc.js.map M static/scripts/mvc/ui/ui-misc.js Log Message: ----------- Fix inputs Commit: 03082a7239531c39046b715cd2a9de13f6eed8df https://github.com/galaxyproject/galaxy/commit/03082a7239531c39046b715cd2a9… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-01-14 (Thu, 14 Jan 2016) Changed paths: M client/galaxy/scripts/mvc/ui/ui-misc.js R config/plugins/visualizations/charts/static/build-app.js M static/maps/mvc/ui/ui-misc.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M test/qunit/tests/ui_tests.js Log Message: ----------- Fix test label Commit: 49a72dacc678e2be017d7b926afc87d17de7e179 https://github.com/galaxyproject/galaxy/commit/49a72dacc678e2be017d7b926afc… Author: carlfeberhard <carlfeberhard(a)users.noreply.github.com> Date: 2016-01-15 (Fri, 15 Jan 2016) Changed paths: M client/galaxy/scripts/mvc/form/form-view.js M client/galaxy/scripts/mvc/ui/ui-list.js M client/galaxy/scripts/mvc/ui/ui-misc.js M client/galaxy/style/less/ui.less R config/plugins/visualizations/charts/static/build-app.js M static/maps/mvc/form/form-view.js.map M static/maps/mvc/ui/ui-list.js.map M static/maps/mvc/ui/ui-misc.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/form/form-view.js M static/scripts/mvc/ui/ui-list.js M static/scripts/mvc/ui/ui-misc.js M static/style/blue/base.css A test/qunit/tests/ui_tests.html A test/qunit/tests/ui_tests.js Log Message: ----------- Merge pull request #1519 from guerler/refactor_000 Cleanup common ui elements, add test cases Compare: https://github.com/galaxyproject/galaxy/compare/274af50792aa...49a72dacc678

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