- galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] 3e57fb: Quick 'make everything private' implementation. T...
by GitHub 07 Dec '18

07 Dec '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 3e57fb172fbf580da04131355326681e118cc82b https://github.com/galaxyproject/galaxy/commit/3e57fb172fbf580da04131355326… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-10-31 (Wed, 31 Oct 2018) Changed paths: M client/galaxy/scripts/mvc/history/options-menu.js M client/galaxy/scripts/mvc/user/user-preferences.js M lib/galaxy/webapps/galaxy/controllers/history.py Log Message: ----------- Quick 'make everything private' implementation. Takes a single history or operates on all of a user's histories. Intentionally doesn't use an API, rather a simple webcontroller endpoint, because I think we'll want to handle this with group operations and the like down the road, and will enhance existing APIs Commit: a07a1c3a566571b9b83dc7a99fae1ed0d275f020 https://github.com/galaxyproject/galaxy/commit/a07a1c3a566571b9b83dc7a99fae… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-10-31 (Wed, 31 Oct 2018) Changed paths: M lib/galaxy/webapps/galaxy/controllers/history.py Log Message: ----------- Make logic more concise, fix typo, add commentary. Commit: 43689c1f3fc8e2fc49c3d6dfc033f70fe06e4c32 https://github.com/galaxyproject/galaxy/commit/43689c1f3fc8e2fc49c3d6dfc033… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-10-31 (Wed, 31 Oct 2018) Changed paths: M lib/galaxy/webapps/galaxy/controllers/history.py Log Message: ----------- Update message to reflect all histories functionality. Commit: a3fd7084e2f02a9e9bc5383cd7f76532450774e9 https://github.com/galaxyproject/galaxy/commit/a3fd7084e2f02a9e9bc5383cd7f7… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-11-09 (Fri, 09 Nov 2018) Changed paths: M lib/galaxy/webapps/galaxy/controllers/history.py Log Message: ----------- Exclude library associated datasets from history make-all-private functionality. Commit: cc53b07253538e192b8196dee300aefaf8e2fde5 https://github.com/galaxyproject/galaxy/commit/cc53b07253538e192b8196dee300… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-11-09 (Fri, 09 Nov 2018) Changed paths: M client/galaxy/scripts/mvc/history/options-menu.js M client/galaxy/scripts/mvc/user/user-preferences.js Log Message: ----------- Update messaging to indicate library datasets are not included in the privacy pass. Commit: 5d38e558f27b2ec14088376ec1a07c3bf4b25d08 https://github.com/galaxyproject/galaxy/commit/5d38e558f27b2ec14088376ec1a0… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-11-09 (Fri, 09 Nov 2018) Changed paths: M client/galaxy/scripts/mvc/history/options-menu.js M lib/galaxy/webapps/galaxy/controllers/history.py Log Message: ----------- Resolve two issues from refactoring. Commit: 9b481ba9d7d34e101d54ae1ed0821f6a05b27be0 https://github.com/galaxyproject/galaxy/commit/9b481ba9d7d34e101d54ae1ed082… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-11-09 (Fri, 09 Nov 2018) Changed paths: M client/galaxy/scripts/apps/analysis.js Log Message: ----------- Client format Commit: 4894ab9c80ae39f8b5527860618e973daee00a61 https://github.com/galaxyproject/galaxy/commit/4894ab9c80ae39f8b5527860618e… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-12-07 (Fri, 07 Dec 2018) Changed paths: M client/galaxy/scripts/mvc/user/user-preferences.js Log Message: ----------- Add pointer to user permissions interface on finish of make datasets private Commit: e8d2b334a03c395b8c0abf54208b0e28368d0f81 https://github.com/galaxyproject/galaxy/commit/e8d2b334a03c395b8c0abf54208b… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-12-07 (Fri, 07 Dec 2018) Changed paths: M client/galaxy/scripts/mvc/history/options-menu.js M client/galaxy/scripts/mvc/user/user-preferences.js M lib/galaxy/webapps/galaxy/controllers/history.py Log Message: ----------- Merge pull request #6952 from dannon/history_privacy Quick 'make all datasets private' implementation. Compare: https://github.com/galaxyproject/galaxy/compare/bddfe3889031...e8d2b334a03c **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/usegalaxy-playbook] 9a4760: Update uniprot to 0.2, update sra_tools to 2.9.1, ...
by GitHub 07 Dec '18

07 Dec '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 9a476008536d522bc34e82816ae82292682797d5 https://github.com/galaxyproject/usegalaxy-playbook/commit/9a476008536d522b… Author: Dave B <dave(a)bx.psu.edu> Date: 2018-12-07 (Fri, 07 Dec 2018) Changed paths: M env/main/files/galaxy/var/integrated_tool_panel.xml M env/main/files/galaxy/var/migrated_tools_conf.xml M env/main/files/galaxy/var/shed_tool_conf.xml M env/test/files/galaxy/var/integrated_tool_panel.xml M env/test/files/galaxy/var/shed_tool_conf.xml Log Message: ----------- Update uniprot to 0.2, update sra_tools to 2.9.1, install annotateMyIDs 3.5.0, hide CTD and DGI **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] 4c2f95: Fix hashing, AND was not the right operation
by GitHub 07 Dec '18

07 Dec '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 4c2f95b1f469d9789e65c4c9be97c4e137014ece https://github.com/galaxyproject/galaxy/commit/4c2f95b1f469d9789e65c4c9be97… Author: Helena Rasche <hxr(a)hx42.org> Date: 2018-12-07 (Fri, 07 Dec 2018) Changed paths: M client/galaxy/scripts/utils/utils.js Log Message: ----------- Fix hashing, AND was not the right operation Commit: bddfe3889031a31ad3efd1dadd8482a6301a9ad9 https://github.com/galaxyproject/galaxy/commit/bddfe3889031a31ad3efd1dadd84… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-12-07 (Fri, 07 Dec 2018) Changed paths: M client/galaxy/scripts/utils/utils.js Log Message: ----------- Merge pull request #7081 from erasche/fix-hash Fix hashing, AND was not the right operation Compare: https://github.com/galaxyproject/galaxy/compare/b453f531e51c...bddfe3889031 **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] 35fd29: Fix Error display
by GitHub 06 Dec '18

06 Dec '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 35fd29062587002f70f660e4a7675bd23545fc85 https://github.com/galaxyproject/galaxy/commit/35fd29062587002f70f660e4a767… Author: jvanbraekel <29703119+jvanbraekel(a)users.noreply.github.com> Date: 2018-12-06 (Thu, 06 Dec 2018) Changed paths: M templates/admin/tool_shed_repository/manage_repository.mako Log Message: ----------- Fix Error display The template display was broken in case of error. 'in_error_state is never defined it should be 'repository.in_error_state' instead. This was leading to some wrong field type display and not displaying the details about the error. Commit: b453f531e51c6fc91d44d777de486b31c82cf726 https://github.com/galaxyproject/galaxy/commit/b453f531e51c6fc91d44d777de48… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-12-06 (Thu, 06 Dec 2018) Changed paths: M templates/admin/tool_shed_repository/manage_repository.mako Log Message: ----------- Merge pull request #7080 from jvanbraekel/patch-1 Fix toolshed repository error display Compare: https://github.com/galaxyproject/galaxy/compare/16f3be66be84...b453f531e51c **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] be4369: Avoid using make for autobuild; reducing necessary...
by GitHub 06 Dec '18

06 Dec '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: be43693ef05dfae85872412f198d87a31424f486 https://github.com/galaxyproject/galaxy/commit/be43693ef05dfae85872412f198d… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-11-29 (Thu, 29 Nov 2018) Changed paths: M scripts/common_startup.sh Log Message: ----------- Avoid using make for autobuild; reducing necessary dependencies out of the box. Commit: 77aec5a79dc18e224ca6246659f68a49864a46cf https://github.com/galaxyproject/galaxy/commit/77aec5a79dc18e224ca6246659f6… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-11-29 (Thu, 29 Nov 2018) Changed paths: M scripts/common_startup.sh Log Message: ----------- Standardize on spaces in common_startup.sh (tabs were mixed in here) Commit: fa408f485048ee8c7afeb96ac6c9da8dea4661f3 https://github.com/galaxyproject/galaxy/commit/fa408f485048ee8c7afeb96ac6c9… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-11-29 (Thu, 29 Nov 2018) Changed paths: M scripts/common_startup.sh Log Message: ----------- exit with error code (and appropriate message) on either build failure Commit: 66fae561b29507a69f5c32690be4791f86f5cdd7 https://github.com/galaxyproject/galaxy/commit/66fae561b29507a69f5c32690be4… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-12-02 (Sun, 02 Dec 2018) Changed paths: M scripts/common_startup.sh Log Message: ----------- Don't use pushd/popd Commit: 57459954de189cb1fd9b6ab8654c8f4700241ea2 https://github.com/galaxyproject/galaxy/commit/57459954de189cb1fd9b6ab8654c… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-12-05 (Wed, 05 Dec 2018) Changed paths: M scripts/common_startup.sh Log Message: ----------- Merge pull request #7060 from dannon/no-make-for-autobuild [18.09] Eliminate dependency on make for automatic client build Commit: 16f3be66be84ac9827f4c0fa213d9ead9ba30bd2 https://github.com/galaxyproject/galaxy/commit/16f3be66be84ac9827f4c0fa213d… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-12-06 (Thu, 06 Dec 2018) Changed paths: M scripts/common_startup.sh Log Message: ----------- Merge branch 'release_18.09' into dev Compare: https://github.com/galaxyproject/galaxy/compare/4bf27f464216...16f3be66be84 **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] f5301c: Dependencies fixes, follow up on #7070
by GitHub 06 Dec '18

06 Dec '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: f5301c264592f5a6d3f7747b1f930f82384c9495 https://github.com/galaxyproject/galaxy/commit/f5301c264592f5a6d3f7747b1f93… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-12-05 (Wed, 05 Dec 2018) Changed paths: M lib/galaxy/dependencies/pipfiles/default/Pipfile M lib/galaxy/dependencies/pipfiles/default/pinned-dev-requirements.txt M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt Log Message: ----------- Dependencies fixes, follow up on #7070 Commit: 7eb436cebc39363330e9b0503c36b00cb763dbc5 https://github.com/galaxyproject/galaxy/commit/7eb436cebc39363330e9b0503c36… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-12-05 (Wed, 05 Dec 2018) Changed paths: M lib/galaxy/dependencies/pipfiles/default/pinned-dev-requirements.txt M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt M lib/galaxy/dependencies/pipfiles/update.sh Log Message: ----------- Update all dependencies with `make update-dependencies` using pipenv 2018.11.26 . Also remove oscillating `python_version < '3.0'` environment marker for `azure-storage-nspkg` package. Commit: 4bf27f4642163be0c3b0b7399453833ba1013a8c https://github.com/galaxyproject/galaxy/commit/4bf27f4642163be0c3b0b7399453… Author: Dannon <dannon.baker(a)gmail.com> Date: 2018-12-06 (Thu, 06 Dec 2018) Changed paths: M lib/galaxy/dependencies/pipfiles/default/Pipfile M lib/galaxy/dependencies/pipfiles/default/pinned-dev-requirements.txt M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt M lib/galaxy/dependencies/pipfiles/update.sh Log Message: ----------- Merge pull request #7079 from nsoranzo/follow-up_on_7070 Follow-up on #7070 Compare: https://github.com/galaxyproject/galaxy/compare/c4dbf8615e98...4bf27f464216 **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] be4369: Avoid using make for autobuild; reducing necessary...
by GitHub 05 Dec '18

05 Dec '18

Branch: refs/heads/release_18.09 Home: https://github.com/galaxyproject/galaxy Commit: be43693ef05dfae85872412f198d87a31424f486 https://github.com/galaxyproject/galaxy/commit/be43693ef05dfae85872412f198d… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-11-29 (Thu, 29 Nov 2018) Changed paths: M scripts/common_startup.sh Log Message: ----------- Avoid using make for autobuild; reducing necessary dependencies out of the box. Commit: 77aec5a79dc18e224ca6246659f68a49864a46cf https://github.com/galaxyproject/galaxy/commit/77aec5a79dc18e224ca6246659f6… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-11-29 (Thu, 29 Nov 2018) Changed paths: M scripts/common_startup.sh Log Message: ----------- Standardize on spaces in common_startup.sh (tabs were mixed in here) Commit: fa408f485048ee8c7afeb96ac6c9da8dea4661f3 https://github.com/galaxyproject/galaxy/commit/fa408f485048ee8c7afeb96ac6c9… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-11-29 (Thu, 29 Nov 2018) Changed paths: M scripts/common_startup.sh Log Message: ----------- exit with error code (and appropriate message) on either build failure Commit: 66fae561b29507a69f5c32690be4791f86f5cdd7 https://github.com/galaxyproject/galaxy/commit/66fae561b29507a69f5c32690be4… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-12-02 (Sun, 02 Dec 2018) Changed paths: M scripts/common_startup.sh Log Message: ----------- Don't use pushd/popd Commit: 57459954de189cb1fd9b6ab8654c8f4700241ea2 https://github.com/galaxyproject/galaxy/commit/57459954de189cb1fd9b6ab8654c… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-12-05 (Wed, 05 Dec 2018) Changed paths: M scripts/common_startup.sh Log Message: ----------- Merge pull request #7060 from dannon/no-make-for-autobuild [18.09] Eliminate dependency on make for automatic client build Compare: https://github.com/galaxyproject/galaxy/compare/46ad1992bdbf...57459954de18 **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] eeffb2: Implement colourful tags
by GitHub 05 Dec '18

05 Dec '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: eeffb26423a2b6380087c01af5d3390c2fd9b0df https://github.com/galaxyproject/galaxy/commit/eeffb26423a2b6380087c01af5d3… Author: Helena Rasche <hxr(a)hx42.org> Date: 2018-12-04 (Tue, 04 Dec 2018) Changed paths: M client/galaxy/scripts/mvc/history/history-item-li.js Log Message: ----------- Implement colourful tags Commit: e6c4292fd5a3182f01f16dfd445359f5dcb87e0c https://github.com/galaxyproject/galaxy/commit/e6c4292fd5a3182f01f16dfd4453… Author: Helena Rasche <hxr(a)hx42.org> Date: 2018-12-04 (Tue, 04 Dec 2018) Changed paths: M client/galaxy/scripts/mvc/history/history-item-li.js M client/galaxy/scripts/mvc/ui/ui-select-default.js M client/galaxy/scripts/utils/utils.js Log Message: ----------- Move to correct location Commit: 5865fe3513232fe893dd2a638a54218599be11a9 https://github.com/galaxyproject/galaxy/commit/5865fe3513232fe893dd2a638a54… Author: Helena Rasche <hxr(a)hx42.org> Date: 2018-12-04 (Tue, 04 Dec 2018) Changed paths: M client/galaxy/scripts/mvc/history/history-item-li.js M client/galaxy/scripts/mvc/ui/ui-select-default.js M client/galaxy/scripts/utils/utils.js Log Message: ----------- Add colorFg function Commit: 12576ef49477f51137cf0f223600a00c2c7b90e3 https://github.com/galaxyproject/galaxy/commit/12576ef49477f51137cf0f223600… Author: Helena Rasche <hxr(a)hx42.org> Date: 2018-12-04 (Tue, 04 Dec 2018) Changed paths: M client/galaxy/scripts/mvc/history/history-item-li.js M client/galaxy/scripts/mvc/ui/ui-select-default.js M client/galaxy/scripts/utils/utils.js Log Message: ----------- Replace with style function Commit: 0e7f2b3595a4235b1672205bd13b73153014f139 https://github.com/galaxyproject/galaxy/commit/0e7f2b3595a4235b1672205bd13b… Author: Helena Rasche <hxr(a)hx42.org> Date: 2018-12-04 (Tue, 04 Dec 2018) Changed paths: M client/galaxy/scripts/utils/utils.js Log Message: ----------- revert to grey border Commit: ad9787ef7050e3747b1b862ba857b1a2557174a0 https://github.com/galaxyproject/galaxy/commit/ad9787ef7050e3747b1b862ba857… Author: Helena Rasche <hxr(a)hx42.org> Date: 2018-12-05 (Wed, 05 Dec 2018) Changed paths: M client/galaxy/scripts/utils/utils.js Log Message: ----------- cleanup/docs Commit: c4dbf8615e98ae8778715e1169b537c8148af3b0 https://github.com/galaxyproject/galaxy/commit/c4dbf8615e98ae8778715e1169b5… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-12-05 (Wed, 05 Dec 2018) Changed paths: M client/galaxy/scripts/mvc/history/history-item-li.js M client/galaxy/scripts/mvc/ui/ui-select-default.js M client/galaxy/scripts/utils/utils.js Log Message: ----------- Merge pull request #7072 from erasche/colour-tags Make tags more colourful Compare: https://github.com/galaxyproject/galaxy/compare/199cca9417d4...c4dbf8615e98 **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] 3931b8: improved parsing of sizes (bytes)
by GitHub 05 Dec '18

05 Dec '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 3931b8ec355df64e780f640d39ac0928d7c8afde https://github.com/galaxyproject/galaxy/commit/3931b8ec355df64e780f640d39ac… Author: M Bernt <m.bernt(a)ufz.de> Date: 2018-12-04 (Tue, 04 Dec 2018) Changed paths: M lib/galaxy/util/__init__.py Log Message: ----------- improved parsing of sizes (bytes) before floats like without byte extension were not recognized (eg 1.0) Commit: 27cc49d3f785c643b4dcdbf0da09d1bf63ee44f9 https://github.com/galaxyproject/galaxy/commit/27cc49d3f785c643b4dcdbf0da09… Author: M Bernt <m.bernt(a)ufz.de> Date: 2018-12-04 (Tue, 04 Dec 2018) Changed paths: M lib/galaxy/util/__init__.py Log Message: ----------- size_to_bytes: use only regex, remove assert, add exceptions Commit: c90d71dd44794f8499813804290d08d3fdae6a6f https://github.com/galaxyproject/galaxy/commit/c90d71dd44794f8499813804290d… Author: Nicola Soranzo <nicola.soranzo(a)gmail.com> Date: 2018-12-04 (Tue, 04 Dec 2018) Changed paths: M lib/galaxy/util/__init__.py Log Message: ----------- Raise ValueError, fix spacing Commit: df51c468898e6bbc236e5a30a2758de4d06c9642 https://github.com/galaxyproject/galaxy/commit/df51c468898e6bbc236e5a30a275… Author: Nicola Soranzo <nicola.soranzo(a)gmail.com> Date: 2018-12-04 (Tue, 04 Dec 2018) Changed paths: M lib/galaxy/util/__init__.py Log Message: ----------- Add missing empty line Commit: 26a6b1c83381d1c75131f330d8b8f4c23680f1dd https://github.com/galaxyproject/galaxy/commit/26a6b1c83381d1c75131f330d8b8… Author: Nicola Soranzo <nicola.soranzo(a)gmail.com> Date: 2018-12-04 (Tue, 04 Dec 2018) Changed paths: M lib/galaxy/util/__init__.py Log Message: ----------- Stricter regexp Commit: 199cca9417d484b8c4998f66beb4892de69accf3 https://github.com/galaxyproject/galaxy/commit/199cca9417d484b8c4998f66beb4… Author: Nicola Soranzo <nicola.soranzo(a)gmail.com> Date: 2018-12-05 (Wed, 05 Dec 2018) Changed paths: M lib/galaxy/util/__init__.py Log Message: ----------- Merge pull request #7067 from bernt-matthias/topic/size-parse Improved parsing of sizes (bytes) Compare: https://github.com/galaxyproject/galaxy/compare/ee8880657865...199cca9417d4 **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/usegalaxy-playbook] c13eca: remove biostar config from Main
by GitHub 04 Dec '18

04 Dec '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: c13eca7a954958839de6c7ae96eea3705a031801 https://github.com/galaxyproject/usegalaxy-playbook/commit/c13eca7a95495883… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-12-04 (Tue, 04 Dec 2018) Changed paths: M env/main/group_vars/galaxyservers/vars.yml Log Message: ----------- remove biostar config from Main **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] cf25f7: Fix nesting of repeats and error when repeat is pr...
by GitHub 04 Dec '18

04 Dec '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: cf25f7dcec6f7f7b13aac93a18ced291d5e74444 https://github.com/galaxyproject/galaxy/commit/cf25f7dcec6f7f7b13aac93a18ce… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2018-12-04 (Tue, 04 Dec 2018) Changed paths: M lib/galaxy/tools/parameters/meta.py Log Message: ----------- Fix nesting of repeats and error when repeat is provided literally. This fixex #7048, where in addition to repeat values ('repeat_0|param: some_value') there are also values for the repeat param itself ('repeat': []). Commit: 3a93fd4f2321bf141b2ccf34ea80c42ee517b33d https://github.com/galaxyproject/galaxy/commit/3a93fd4f2321bf141b2ccf34ea80… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2018-12-04 (Tue, 04 Dec 2018) Changed paths: M test/unit/tools/test_parameter_parsing.py Log Message: ----------- Add test for proper nesting in process_keys and a unit test for https://github.com/galaxyproject/galaxy/issues/7048 Commit: 46ad1992bdbf478495b14780e96e251d00ceb700 https://github.com/galaxyproject/galaxy/commit/46ad1992bdbf478495b14780e96e… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-12-04 (Tue, 04 Dec 2018) Changed paths: M lib/galaxy/tools/parameters/meta.py M test/unit/tools/test_parameter_parsing.py Log Message: ----------- Merge pull request #7071 from mvdbeek/fix_process_key [18.09] Fix process key Commit: ee88806578655fff9d32e72e90468e0ca87c877b https://github.com/galaxyproject/galaxy/commit/ee88806578655fff9d32e72e9046… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-12-04 (Tue, 04 Dec 2018) Changed paths: M lib/galaxy/tools/parameters/meta.py M test/unit/tools/test_parameter_parsing.py Log Message: ----------- Merge branch 'release_18.09' into dev Compare: https://github.com/galaxyproject/galaxy/compare/aaa8d1a61cb5...ee8880657865 **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] cf25f7: Fix nesting of repeats and error when repeat is pr...
by GitHub 04 Dec '18

04 Dec '18

Branch: refs/heads/release_18.09 Home: https://github.com/galaxyproject/galaxy Commit: cf25f7dcec6f7f7b13aac93a18ced291d5e74444 https://github.com/galaxyproject/galaxy/commit/cf25f7dcec6f7f7b13aac93a18ce… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2018-12-04 (Tue, 04 Dec 2018) Changed paths: M lib/galaxy/tools/parameters/meta.py Log Message: ----------- Fix nesting of repeats and error when repeat is provided literally. This fixex #7048, where in addition to repeat values ('repeat_0|param: some_value') there are also values for the repeat param itself ('repeat': []). Commit: 3a93fd4f2321bf141b2ccf34ea80c42ee517b33d https://github.com/galaxyproject/galaxy/commit/3a93fd4f2321bf141b2ccf34ea80… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2018-12-04 (Tue, 04 Dec 2018) Changed paths: M test/unit/tools/test_parameter_parsing.py Log Message: ----------- Add test for proper nesting in process_keys and a unit test for https://github.com/galaxyproject/galaxy/issues/7048 Commit: 46ad1992bdbf478495b14780e96e251d00ceb700 https://github.com/galaxyproject/galaxy/commit/46ad1992bdbf478495b14780e96e… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-12-04 (Tue, 04 Dec 2018) Changed paths: M lib/galaxy/tools/parameters/meta.py M test/unit/tools/test_parameter_parsing.py Log Message: ----------- Merge pull request #7071 from mvdbeek/fix_process_key [18.09] Fix process key Compare: https://github.com/galaxyproject/galaxy/compare/51afe15f86c0...46ad1992bdbf **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] 118cd1: downgrade bdbag, 1.5.0 requires python:>=2.7.9 whi...
by GitHub 04 Dec '18

04 Dec '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 118cd15186fc3d8d4784f8847355542ee07a8a5a https://github.com/galaxyproject/galaxy/commit/118cd15186fc3d8d4784f8847355… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-12-03 (Mon, 03 Dec 2018) Changed paths: M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt Log Message: ----------- downgrade bdbag, 1.5.0 requires python:>=2.7.9 which centos7 does not have Commit: aaa8d1a61cb567b49b2171e27bc623b59c0227fe https://github.com/galaxyproject/galaxy/commit/aaa8d1a61cb567b49b2171e27bc6… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-12-04 (Tue, 04 Dec 2018) Changed paths: M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt Log Message: ----------- Merge pull request #7070 from martenson/downgrade-bdbag downgrade bdbag, 1.5.0 requires python:>=2.7.9 Compare: https://github.com/galaxyproject/galaxy/compare/c679b64272cc...aaa8d1a61cb5 **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/usegalaxy-playbook] 582597: Update Main
by GitHub 03 Dec '18

03 Dec '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 582597f68c785d034fe8139e4031226c610b8631 https://github.com/galaxyproject/usegalaxy-playbook/commit/582597f68c785d03… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-12-03 (Mon, 03 Dec 2018) Changed paths: M env/main/files/galaxy/galaxy_version.yml Log Message: ----------- Update Main **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/usegalaxy-playbook] 1e771e: update test
by GitHub 03 Dec '18

03 Dec '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 1e771e3bdd521764ab9d89b43ef1c6019f7d0082 https://github.com/galaxyproject/usegalaxy-playbook/commit/1e771e3bdd521764… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-12-03 (Mon, 03 Dec 2018) Changed paths: M env/test/files/galaxy/galaxy_version.yml Log Message: ----------- update test **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/usegalaxy-playbook] 1dc0e8: add helpsite config to Test and Main
by GitHub 03 Dec '18

03 Dec '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 1dc0e8d68d9be0e49065d5d5c00c4e220e25dfb7 https://github.com/galaxyproject/usegalaxy-playbook/commit/1dc0e8d68d9be0e4… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-12-03 (Mon, 03 Dec 2018) Changed paths: M env/main/group_vars/galaxyservers/vars.yml M env/test/group_vars/galaxyservers/vars.yml Log Message: ----------- add helpsite config to Test and Main **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] 670358: Fix link to requirements.txt
by GitHub 02 Dec '18

02 Dec '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 6703584714507f129fee6e967df875bfa6027fc0 https://github.com/galaxyproject/galaxy/commit/6703584714507f129fee6e967df8… Author: Sergey Golitsynskiy <sgolitsynskiy(a)gmail.com> Date: 2018-11-30 (Fri, 30 Nov 2018) Changed paths: M doc/source/admin/framework_dependencies.rst Log Message: ----------- Fix link to requirements.txt Dependency files rearranged (commit 1b0ccf6, Nov. 1, 2017) Commit: c679b64272ccbff630fd68d9f201b95d54e75e00 https://github.com/galaxyproject/galaxy/commit/c679b64272ccbff630fd68d9f201… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-12-02 (Sun, 02 Dec 2018) Changed paths: M doc/source/admin/framework_dependencies.rst Log Message: ----------- Merge pull request #7065 from ic4f/dev Fix link to requirements.txt Compare: https://github.com/galaxyproject/galaxy/compare/030cf02fc800...c679b64272cc **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] 9a9b81: add datatype sniff button in edit dataset attribut...
by GitHub 30 Nov '18

30 Nov '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 9a9b815d8fc9810600668ca358f72e0130e37d8f https://github.com/galaxyproject/galaxy/commit/9a9b815d8fc9810600668ca358f7… Author: Qiang Gu <guqiang01(a)gmail.com> Date: 2018-11-15 (Thu, 15 Nov 2018) Changed paths: M client/galaxy/scripts/mvc/dataset/dataset-edit-attributes.js M lib/galaxy/webapps/galaxy/controllers/dataset.py Log Message: ----------- add datatype sniff button in edit dataset attributes page Commit: 170ed2a8c2a4d324ceac6fabf2a115d6eb801c16 https://github.com/galaxyproject/galaxy/commit/170ed2a8c2a4d324ceac6fabf2a1… Author: Qiang Gu <guqiang01(a)gmail.com> Date: 2018-11-15 (Thu, 15 Nov 2018) Changed paths: M client/galaxy/scripts/mvc/dataset/dataset-edit-attributes.js M lib/galaxy/webapps/galaxy/controllers/dataset.py Log Message: ----------- fix style and wording Commit: 4ff3c95e38d1c62a5d1b85994e2dde909a2f7e38 https://github.com/galaxyproject/galaxy/commit/4ff3c95e38d1c62a5d1b85994e2d… Author: Qiang Gu <guqiang01(a)gmail.com> Date: 2018-11-19 (Mon, 19 Nov 2018) Changed paths: M client/galaxy/scripts/mvc/dataset/dataset-edit-attributes.js Log Message: ----------- fix a typo error Commit: 030cf02fc8009cf412a763863756de4b79beba77 https://github.com/galaxyproject/galaxy/commit/030cf02fc8009cf412a763863756… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-11-30 (Fri, 30 Nov 2018) Changed paths: M client/galaxy/scripts/mvc/dataset/dataset-edit-attributes.js M lib/galaxy/webapps/galaxy/controllers/dataset.py Log Message: ----------- Merge pull request #7018 from qiagu/join1 Add datatype sniff button to edit dataset attributes page Compare: https://github.com/galaxyproject/galaxy/compare/8c8fc364e1ee...030cf02fc800 **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] 4cde6b: Escape dataset names in job submission success mes...
by GitHub 30 Nov '18

30 Nov '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 4cde6b9b814acae02393c9fc6b432506cb9c429d https://github.com/galaxyproject/galaxy/commit/4cde6b9b814acae02393c9fc6b43… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-11-29 (Thu, 29 Nov 2018) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form.js Log Message: ----------- Escape dataset names in job submission success message Commit: 8c8fc364e1ee9c1b91f266c13867d27c6f7cca80 https://github.com/galaxyproject/galaxy/commit/8c8fc364e1ee9c1b91f266c13867… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-11-30 (Fri, 30 Nov 2018) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form.js Log Message: ----------- Merge pull request #7062 from guerler/escape_select2 Escape dataset names in job submission success message Compare: https://github.com/galaxyproject/galaxy/compare/4e1618e754f6...8c8fc364e1ee **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] 2a3b22: Update galaxy.yml.sample and galaxy_options.rst
by GitHub 30 Nov '18

30 Nov '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 2a3b22cf497055a1afc578a1f7aead35f51a0ba2 https://github.com/galaxyproject/galaxy/commit/2a3b22cf497055a1afc578a1f7ae… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-11-30 (Fri, 30 Nov 2018) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst Log Message: ----------- Update galaxy.yml.sample and galaxy_options.rst with `make config-rebuild` . Follow-up on https://github.com/galaxyproject/galaxy/pull/6776 . Commit: 4e1618e754f6bc9b28cbd2fc1dc06c2288b1239f https://github.com/galaxyproject/galaxy/commit/4e1618e754f6bc9b28cbd2fc1dc0… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-11-30 (Fri, 30 Nov 2018) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst Log Message: ----------- Merge pull request #7064 from nsoranzo/make_config-rebuild Update ``galaxy.yml.sample`` and ``galaxy_options.rst`` Compare: https://github.com/galaxyproject/galaxy/compare/7183a17efc7c...4e1618e754f6 **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] 6fa0c8: add new item to the help menu
by GitHub 30 Nov '18

30 Nov '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 6fa0c8f932831fe91db492de09a2bb4b48621738 https://github.com/galaxyproject/galaxy/commit/6fa0c8f932831fe91db492de09a2… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-11-28 (Wed, 28 Nov 2018) Changed paths: M client/galaxy/scripts/layout/menu.js M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/managers/configuration.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- add new item to the help menu Commit: 72f5d1a35f0a854a242c0854f670ab82045e95a9 https://github.com/galaxyproject/galaxy/commit/72f5d1a35f0a854a242c0854f670… Author: Björn Grüning <bjoern(a)gruenings.eu> Date: 2018-11-29 (Thu, 29 Nov 2018) Changed paths: M client/galaxy/scripts/layout/menu.js M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/managers/configuration.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Merge pull request #7054 from martenson/help-menu-item-rel [18.09] add new item to the help menu Commit: 247fd018105ae8d08e7eeb89b5f92dfbe6b8548c https://github.com/galaxyproject/galaxy/commit/247fd018105ae8d08e7eeb89b5f9… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-11-29 (Thu, 29 Nov 2018) Changed paths: M client/galaxy/scripts/layout/menu.js M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/webapps/galaxy/config_schema.yml M static/style/blue/base.css Log Message: ----------- make the transition non-instrusive Commit: d3679e2541045f25e6007efbaed5d9d11f91a8c4 https://github.com/galaxyproject/galaxy/commit/d3679e2541045f25e6007efbaed5… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-11-30 (Fri, 30 Nov 2018) Changed paths: M static/style/blue/base.css Log Message: ----------- revert the changes to css, probably remnant from working on dev Commit: 51afe15f86c0f67e2e51fd0c67ba950a424f0983 https://github.com/galaxyproject/galaxy/commit/51afe15f86c0f67e2e51fd0c67ba… Author: Nicola Soranzo <nicola.soranzo(a)gmail.com> Date: 2018-11-30 (Fri, 30 Nov 2018) Changed paths: M client/galaxy/scripts/layout/menu.js M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Merge pull request #7061 from martenson/help-menu-item-rel [18.09] make the menu transition non-instrusive Commit: 7183a17efc7cfb598c376eaf0d391efb6848e27d https://github.com/galaxyproject/galaxy/commit/7183a17efc7cfb598c376eaf0d39… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-11-30 (Fri, 30 Nov 2018) Changed paths: M client/galaxy/scripts/layout/menu.js M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/managers/configuration.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Merge branch 'release_18.09' into dev Compare: https://github.com/galaxyproject/galaxy/compare/2376d7f2fd57...7183a17efc7c **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] 247fd0: make the transition non-instrusive
by GitHub 30 Nov '18

30 Nov '18

Branch: refs/heads/release_18.09 Home: https://github.com/galaxyproject/galaxy Commit: 247fd018105ae8d08e7eeb89b5f92dfbe6b8548c https://github.com/galaxyproject/galaxy/commit/247fd018105ae8d08e7eeb89b5f9… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-11-29 (Thu, 29 Nov 2018) Changed paths: M client/galaxy/scripts/layout/menu.js M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/webapps/galaxy/config_schema.yml M static/style/blue/base.css Log Message: ----------- make the transition non-instrusive Commit: d3679e2541045f25e6007efbaed5d9d11f91a8c4 https://github.com/galaxyproject/galaxy/commit/d3679e2541045f25e6007efbaed5… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-11-30 (Fri, 30 Nov 2018) Changed paths: M static/style/blue/base.css Log Message: ----------- revert the changes to css, probably remnant from working on dev Commit: 51afe15f86c0f67e2e51fd0c67ba950a424f0983 https://github.com/galaxyproject/galaxy/commit/51afe15f86c0f67e2e51fd0c67ba… Author: Nicola Soranzo <nicola.soranzo(a)gmail.com> Date: 2018-11-30 (Fri, 30 Nov 2018) Changed paths: M client/galaxy/scripts/layout/menu.js M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Merge pull request #7061 from martenson/help-menu-item-rel [18.09] make the menu transition non-instrusive Compare: https://github.com/galaxyproject/galaxy/compare/72f5d1a35f0a...51afe15f86c0 **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/infrastructure-playbook] 5d758f: Proxy Biostar archive in S3 from Athena
by GitHub 29 Nov '18

29 Nov '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 5d758fb276a8e9d12126155ff8d7d01ad0f5dfae https://github.com/galaxyproject/infrastructure-playbook/commit/5d758fb276a… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-11-29 (Thu, 29 Nov 2018) Changed paths: M env/common/files/ssl/athena.galaxyproject.org_cert.pem M env/common/group_vars/sslservers/vault.yml M env/galaxy/host_vars/athena.galaxyproject.org/vars.yml A env/galaxy/templates/nginx/biostar.j2 Log Message: ----------- Proxy Biostar archive in S3 from Athena **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/usegalaxy-playbook] 8e9e3b: Started moved from biostar to help.galaxyproject.o...
by GitHub 29 Nov '18

29 Nov '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 8e9e3b9ba1e1fdfda667625460ae8a772a4d1e3f https://github.com/galaxyproject/usegalaxy-playbook/commit/8e9e3b9ba1e1fdfd… Author: tnabtaf <clements(a)galaxyproject.org> Date: 2018-11-28 (Wed, 28 Nov 2018) Changed paths: R env/common/files/galaxy/static/welcome_img/GalaxyBiostar.png R env/common/files/galaxy/static/welcome_img/GalaxyBiostarHelp.png A env/common/files/galaxy/static/welcome_img/galaxy-help.png M env/common/templates/galaxy/static/welcome.html.j2 Log Message: ----------- Started moved from biostar to help.galaxyproject.org Commit: 5300cb8a0408afc534149c5b912adb46c4def928 https://github.com/galaxyproject/usegalaxy-playbook/commit/5300cb8a0408afc5… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-11-29 (Thu, 29 Nov 2018) Changed paths: R env/common/files/galaxy/static/welcome_img/GalaxyBiostar.png R env/common/files/galaxy/static/welcome_img/GalaxyBiostarHelp.png A env/common/files/galaxy/static/welcome_img/galaxy-help.png M env/common/templates/galaxy/static/welcome.html.j2 Log Message: ----------- Merge pull request #180 from galaxyproject/biostar-to-discourse Started moved from biostar to help.galaxyproject.org Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/75d65c6b2b44...… **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/usegalaxy-playbook] 75d65c: remove biostar configuration from Test
by GitHub 29 Nov '18

29 Nov '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 75d65c6b2b44421c1d81e6b51cfc9a39a46fd7cd https://github.com/galaxyproject/usegalaxy-playbook/commit/75d65c6b2b44421c… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-11-29 (Thu, 29 Nov 2018) Changed paths: M env/test/group_vars/galaxyservers/vars.yml Log Message: ----------- remove biostar configuration from Test **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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