galaxy-commits

Download

galaxy-commits@lists.galaxyproject.org

15302 discussions

commit/galaxy-central: davebgx: Merge fix from stable.
by commits-noreply＠bitbucket.org 14 Jul '14

14 Jul '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/018d08d81c1e/ Changeset: 018d08d81c1e User: davebgx Date: 2014-07-14 15:19:10 Summary: Merge fix from stable. Affected #: 1 file diff -r 5b7e495d6f2fefe2b51da8bc438e4053b2a7a6af -r 018d08d81c1e58e9aa42e8c5b179c413f6fb509b lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py --- a/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py +++ b/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py @@ -703,7 +703,9 @@ filename = action_dict[ 'target_filename' ] else: filename = url.split( '/' )[ -1 ] - self.url_download( work_dir, filename, url ) + if current_dir is not None: + work_dir = current_dir + self.url_download( work_dir, filename, url, extract=action_dict[ 'extract' ] ) if initial_download: dir = os.path.curdir return tool_dependency, filtered_actions, dir Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: davebgx: When executing a download_file action, take into account that the current working directory may have been modified by previous steps.
by commits-noreply＠bitbucket.org 14 Jul '14

14 Jul '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/deba1986ea22/ Changeset: deba1986ea22 Branch: stable User: davebgx Date: 2014-07-09 16:39:01 Summary: When executing a download_file action, take into account that the current working directory may have been modified by previous steps. Affected #: 1 file diff -r b1441a96b8401fd14ab3364c5d6dfa0733df263e -r deba1986ea22e42fb1f290f50a62b51d4cfad762 lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py --- a/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py +++ b/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py @@ -447,7 +447,9 @@ filename = action_dict[ 'target_filename' ] else: filename = url.split( '/' )[ -1 ] - td_common_util.url_download( work_dir, filename, url ) + if current_dir is not None: + work_dir = current_dir + td_common_util.url_download( work_dir, filename, url, extract=action_dict[ 'extract' ] ) if initial_download: dir = os.path.curdir return tool_dependency, filtered_actions, dir Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: jgoecks: Fix bug in visualization data provider: correctly hash identifier.
by commits-noreply＠bitbucket.org 12 Jul '14

12 Jul '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/5b7e495d6f2f/ Changeset: 5b7e495d6f2f User: jgoecks Date: 2014-07-13 01:41:55 Summary: Fix bug in visualization data provider: correctly hash identifier. Affected #: 1 file diff -r 20094b0c186b6231251838d96662ad202622ef22 -r 5b7e495d6f2fefe2b51da8bc438e4053b2a7a6af lib/galaxy/visualization/data_providers/genome.py --- a/lib/galaxy/visualization/data_providers/genome.py +++ b/lib/galaxy/visualization/data_providers/genome.py @@ -1057,7 +1057,7 @@ r1 = [ read['start'], read['end'], read['cigar'], read['strand'], read['seq'] ] r2 = [ read['mate_start'], read['mate_start'] ] - results.append( [ "%i_%s" % ( read_start, qname ), read_start, read_end, qname, r1, r2, [read[ 'mapq' ], 125] ] ) + results.append( [ hash( "%i_%s" % ( read_start, qname ) ), read_start, read_end, qname, r1, r2, [read[ 'mapq' ], 125] ] ) # Clean up. TODO: is this needed? If so, we'll need a cleanup function after processing the data. # bamfile.close() Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: jgoecks: Visualization genome data providers: readd require numpy because it is a dependency of bx-python.
by commits-noreply＠bitbucket.org 11 Jul '14

11 Jul '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/20094b0c186b/ Changeset: 20094b0c186b User: jgoecks Date: 2014-07-11 19:53:04 Summary: Visualization genome data providers: readd require numpy because it is a dependency of bx-python. Affected #: 1 file diff -r b74c56d994efbb0e8330d9dd75c682358c963497 -r 20094b0c186b6231251838d96662ad202622ef22 lib/galaxy/visualization/data_providers/genome.py --- a/lib/galaxy/visualization/data_providers/genome.py +++ b/lib/galaxy/visualization/data_providers/genome.py @@ -8,6 +8,7 @@ import random import math +pkg_resources.require( "numpy" ) pkg_resources.require( "bx-python" ) pkg_resources.require( "pysam" ) from bx.interval_index_file import Indexes Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: jgoecks: Visualization genome data providers: remove dependency on numpy.
by commits-noreply＠bitbucket.org 11 Jul '14

11 Jul '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/b74c56d994ef/ Changeset: b74c56d994ef User: jgoecks Date: 2014-07-11 18:20:40 Summary: Visualization genome data providers: remove dependency on numpy. Affected #: 1 file diff -r 154429911adcedfefb26776670805f4591baf502 -r b74c56d994efbb0e8330d9dd75c682358c963497 lib/galaxy/visualization/data_providers/genome.py --- a/lib/galaxy/visualization/data_providers/genome.py +++ b/lib/galaxy/visualization/data_providers/genome.py @@ -6,11 +6,10 @@ import pkg_resources import itertools import random +import math pkg_resources.require( "bx-python" ) pkg_resources.require( "pysam" ) -pkg_resources.require( "numpy" ) -import numpy from bx.interval_index_file import Indexes from bx.bbi.bigwig_file import BigWigFile from bx.bbi.bigbed_file import BigBedFile @@ -1179,7 +1178,7 @@ var = summary.sum_squares[0] - mean if valid_count > 1: var /= valid_count - 1 - sd = numpy.sqrt( var ) + sd = math.sqrt( var ) min_val = summary.min_val[0] max_val = summary.max_val[0] Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: dannon: Migration 104 was using a Session() object that conflicts with the threadlocal strategy, which has been causing the '103 is not 105' migration errors we've seen. scoped_session works, but the threadlocal should probably be completely deprecated moving forward (removed from universe_wsgi.ini.sample by nate just now). See http://docs.sqlalchemy.org/en/rel_0_9/core/connections.html#threadlocal-strategy
by commits-noreply＠bitbucket.org 11 Jul '14

11 Jul '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/154429911adc/ Changeset: 154429911adc User: dannon Date: 2014-07-11 17:54:27 Summary: Migration 104 was using a Session() object that conflicts with the threadlocal strategy, which has been causing the '103 is not 105' migration errors we've seen. scoped_session works, but the threadlocal should probably be completely deprecated moving forward (removed from universe_wsgi.ini.sample by nate just now). See http://docs.sqlalchemy.org/en/rel_0_9/core/connections.html#threadlocal-str… Affected #: 1 file diff -r 6968401b626be099ac96a4b41c51ee6c5bdcea58 -r 154429911adcedfefb26776670805f4591baf502 lib/galaxy/model/migrate/versions/0104_update_genome_downloader_job_parameters.py --- a/lib/galaxy/model/migrate/versions/0104_update_genome_downloader_job_parameters.py +++ b/lib/galaxy/model/migrate/versions/0104_update_genome_downloader_job_parameters.py @@ -23,6 +23,8 @@ handler.setFormatter( formatter ) log.addHandler( handler ) +metadata = MetaData() +context = scoped_session( sessionmaker( autoflush=False, autocommit=True ) ) class DeferredJob( object ): states = Bunch( NEW = 'new', @@ -37,12 +39,8 @@ self.params = params def upgrade(migrate_engine): - metadata = MetaData() metadata.bind = migrate_engine - Session = sessionmaker( bind=migrate_engine) - context = Session() - DeferredJob.table = Table( "deferred_job", metadata, Column( "id", Integer, primary_key=True ), Column( "create_time", DateTime, default=now ), @@ -70,12 +68,8 @@ context.flush() def downgrade(migrate_engine): - metadata = MetaData() metadata.bind = migrate_engine - Session = sessionmaker( bind=migrate_engine) - context = Session() - jobs = context.query( DeferredJob ).filter_by( plugin='GenomeTransferPlugin' ).all() for job in jobs: Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: natefoo: Remove deprecated threadlocal engine strategy from sample config.
by commits-noreply＠bitbucket.org 11 Jul '14

11 Jul '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/6968401b626b/ Changeset: 6968401b626b User: natefoo Date: 2014-07-11 17:38:30 Summary: Remove deprecated threadlocal engine strategy from sample config. Affected #: 1 file diff -r bde270ca78de3a6c380250e8f594c31a4a4ce73c -r 6968401b626be099ac96a4b41c51ee6c5bdcea58 universe_wsgi.ini.sample --- a/universe_wsgi.ini.sample +++ b/universe_wsgi.ini.sample @@ -109,10 +109,6 @@ # only available for PostgreSQL and is highly recommended. #database_engine_option_server_side_cursors = False -# Create only one connection to the database per thread, to reduce the -# connection overhead. Recommended when not using SQLite: -#database_engine_option_strategy = threadlocal - # Log all database transactions, can be useful for debugging and performance # profiling. Logging is done via Python's 'logging' module under the qualname # 'galaxy.model.orm.logging_connection_proxy' Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: natefoo: Automatically use a virtualenv in galaxy_root/.venv/ if it exists (a la Pulsar).
by commits-noreply＠bitbucket.org 11 Jul '14

11 Jul '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/bde270ca78de/ Changeset: bde270ca78de User: natefoo Date: 2014-07-11 15:58:08 Summary: Automatically use a virtualenv in galaxy_root/.venv/ if it exists (a la Pulsar). Affected #: 2 files diff -r 82a80300b9a101072ea614de5424ec76ebae9340 -r bde270ca78de3a6c380250e8f594c31a4a4ce73c .hgignore --- a/.hgignore +++ b/.hgignore @@ -11,6 +11,9 @@ scripts/scramble/lib scripts/scramble/archives +# Python virtualenv +.venv + # Database stuff database/beaker_sessions database/community_files diff -r 82a80300b9a101072ea614de5424ec76ebae9340 -r bde270ca78de3a6c380250e8f594c31a4a4ce73c run.sh --- a/run.sh +++ b/run.sh @@ -11,6 +11,13 @@ python ./scripts/build_universe_config.py "$GALAXY_UNIVERSE_CONFIG_DIR" fi +# If there is a .venv/ directory, assume it contains a virtualenv that we +# should run this instance in. +if [ -d .venv ]; +then + . .venv/bin/activate +fi + if [ -n "$GALAXY_RUN_ALL" ]; then servers=`sed -n 's/^\[server:$.*$\]/\1/ p' universe_wsgi.ini | xargs echo` daemon=`echo "$@" | grep -q daemon` Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: 3 new changesets
by commits-noreply＠bitbucket.org 10 Jul '14

10 Jul '14

3 new commits in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/2dc7164b613f/ Changeset: 2dc7164b613f User: dannon Date: 2014-07-10 23:03:11 Summary: Include annotations (toplevel workflow and step) in workflow show via API. Affected #: 1 file diff -r 2d31b83e2a412cbd07d32a842fa1e51d1a8dc033 -r 2dc7164b613f9d9a01c2017fa57d3f6f83ebff9e lib/galaxy/webapps/galaxy/api/workflows.py --- a/lib/galaxy/webapps/galaxy/api/workflows.py +++ b/lib/galaxy/webapps/galaxy/api/workflows.py @@ -9,6 +9,7 @@ from galaxy import exceptions from galaxy import util from galaxy import web +from galaxy.model.item_attrs import UsesAnnotations from galaxy.web import _future_expose_api as expose_api from galaxy.web.base.controller import BaseAPIController, url_for, UsesStoredWorkflowMixin from galaxy.web.base.controller import UsesHistoryMixin @@ -20,7 +21,7 @@ log = logging.getLogger(__name__) -class WorkflowsAPIController(BaseAPIController, UsesStoredWorkflowMixin, UsesHistoryMixin): +class WorkflowsAPIController(BaseAPIController, UsesStoredWorkflowMixin, UsesHistoryMixin, UsesAnnotations): @web.expose_api def index(self, trans, **kwd): @@ -94,12 +95,14 @@ # Eventually, allow regular tool parameters to be inserted and modified at runtime. # p = step.get_required_parameters() item['inputs'] = inputs + item['annotation'] = self.get_item_annotation_str( trans.sa_session, stored_workflow.user, stored_workflow ) steps = {} for step in latest_workflow.steps: steps[step.id] = {'id': step.id, 'type': step.type, 'tool_id': step.tool_id, 'tool_version': step.tool_version, + 'annotation': self.get_item_annotation_str( trans.sa_session, stored_workflow.user, step ), 'tool_inputs': step.tool_inputs, 'input_steps': {}} for conn in step.input_connections: https://bitbucket.org/galaxy/galaxy-central/commits/50f84f60b60b/ Changeset: 50f84f60b60b User: dannon Date: 2014-07-10 23:11:01 Summary: pep8/cleanup in api/workflows Affected #: 1 file diff -r 2dc7164b613f9d9a01c2017fa57d3f6f83ebff9e -r 50f84f60b60b8bfe307994431676a56ae2e97582 lib/galaxy/webapps/galaxy/api/workflows.py --- a/lib/galaxy/webapps/galaxy/api/workflows.py +++ b/lib/galaxy/webapps/galaxy/api/workflows.py @@ -6,17 +6,14 @@ import logging from sqlalchemy import desc, or_ -from galaxy import exceptions -from galaxy import util -from galaxy import web +from galaxy import exceptions, util, web from galaxy.model.item_attrs import UsesAnnotations from galaxy.web import _future_expose_api as expose_api from galaxy.web.base.controller import BaseAPIController, url_for, UsesStoredWorkflowMixin from galaxy.web.base.controller import UsesHistoryMixin +from galaxy.workflow.extract import extract_workflow from galaxy.workflow.run import invoke from galaxy.workflow.run import WorkflowRunConfig -from galaxy.workflow.extract import extract_workflow - log = logging.getLogger(__name__) @@ -37,9 +34,9 @@ rval = [] filter1 = ( trans.app.model.StoredWorkflow.user == trans.user ) if show_published: - filter1 = or_( filter1, ( trans.app.model.StoredWorkflow.published == True ) ) + filter1 = or_( filter1, ( trans.app.model.StoredWorkflow.published == True ) ) #noqa -- sqlalchemy comparison for wf in trans.sa_session.query( trans.app.model.StoredWorkflow ).filter( - filter1, trans.app.model.StoredWorkflow.table.c.deleted == False ).order_by( + filter1, trans.app.model.StoredWorkflow.table.c.deleted == False ).order_by( #noqa -- sqlalchemy comparison desc( trans.app.model.StoredWorkflow.table.c.update_time ) ).all(): item = wf.to_dict( value_mapper={ 'id': trans.security.encode_id } ) encoded_id = trans.security.encode_id(wf.id) @@ -48,7 +45,7 @@ rval.append(item) for wf_sa in trans.sa_session.query( trans.app.model.StoredWorkflowUserShareAssociation ).filter_by( user=trans.user ).join( 'stored_workflow' ).filter( - trans.app.model.StoredWorkflow.deleted == False ).order_by( + trans.app.model.StoredWorkflow.deleted == False ).order_by( #noqa -- sqlalchemy comparison desc( trans.app.model.StoredWorkflow.update_time ) ).all(): item = wf_sa.stored_workflow.to_dict( value_mapper={ 'id': trans.security.encode_id } ) encoded_id = trans.security.encode_id(wf_sa.stored_workflow.id) @@ -72,7 +69,7 @@ return "Malformed workflow id ( %s ) specified, unable to decode." % str(workflow_id) try: stored_workflow = trans.sa_session.query(trans.app.model.StoredWorkflow).get(decoded_workflow_id) - if stored_workflow.importable == False and stored_workflow.user != trans.user and not trans.user_is_admin(): + if stored_workflow.importable is False and stored_workflow.user != trans.user and not trans.user_is_admin(): if trans.sa_session.query(trans.app.model.StoredWorkflowUserShareAssociation).filter_by(user=trans.user, stored_workflow=stored_workflow).count() == 0: trans.response.status = 400 return("Workflow is neither importable, nor owned by or shared with current user") @@ -202,8 +199,7 @@ history_param = payload.get('history', '') # Get workflow + accessibility check. - stored_workflow = trans.sa_session.query(self.app.model.StoredWorkflow).get( - trans.security.decode_id(workflow_id)) + stored_workflow = trans.sa_session.query(self.app.model.StoredWorkflow).get(trans.security.decode_id(workflow_id)) if stored_workflow.user != trans.user and not trans.user_is_admin(): if trans.sa_session.query(trans.app.model.StoredWorkflowUserShareAssociation).filter_by(user=trans.user, stored_workflow=stored_workflow).count() == 0: trans.response.status = 400 @@ -226,9 +222,8 @@ # Get target history. if history_param.startswith('hist_id='): - #Passing an existing history to use. - history = trans.sa_session.query(self.app.model.History).get( - trans.security.decode_id(history_param[8:])) + # Passing an existing history to use. + history = trans.sa_session.query(self.app.model.History).get(trans.security.decode_id(history_param[8:])) if history.user != trans.user and not trans.user_is_admin(): trans.response.status = 400 return "Invalid History specified." @@ -314,7 +309,7 @@ ret_dict = self._workflow_to_dict( trans, stored_workflow ) if not ret_dict: - #This workflow has a tool that's missing from the distribution + # This workflow has a tool that's missing from the distribution trans.response.status = 400 return "Workflow cannot be exported due to missing tools." return ret_dict @@ -341,12 +336,11 @@ trans.response.status = 403 return("Workflow is not owned by current user") - #Mark a workflow as deleted + # Mark a workflow as deleted stored_workflow.deleted = True trans.sa_session.flush() # TODO: Unsure of response message to let api know that a workflow was successfully deleted - #return 'OK' return ( "Workflow '%s' successfully deleted" % stored_workflow.name ) @web.expose_api @@ -397,7 +391,7 @@ stored_workflow = self.get_stored_workflow( trans, workflow_id, check_ownership=False ) except: raise exceptions.ObjectNotFound( "Malformed workflow id ( %s ) specified." % workflow_id ) - if stored_workflow.importable == False: + if stored_workflow.importable is False: raise exceptions.MessageException( 'The owner of this workflow has disabled imports via this link.' ) elif stored_workflow.deleted: raise exceptions.MessageException( "You can't import this workflow because it has been deleted." ) @@ -420,13 +414,13 @@ """ try: stored_workflow = trans.sa_session.query(self.app.model.StoredWorkflow).get(trans.security.decode_id(workflow_id)) - except Exception, e: + except Exception: raise exceptions.ObjectNotFound() # check to see if user has permissions to selected workflow if stored_workflow.user != trans.user and not trans.user_is_admin(): if trans.sa_session.query(trans.app.model.StoredWorkflowUserShareAssociation).filter_by(user=trans.user, stored_workflow=stored_workflow).count() == 0: raise exceptions.ItemOwnershipException() - results = trans.sa_session.query(self.app.model.WorkflowInvocation).filter(self.app.model.WorkflowInvocation.workflow_id==stored_workflow.latest_workflow_id) + results = trans.sa_session.query(self.app.model.WorkflowInvocation).filter(self.app.model.WorkflowInvocation.workflow_id == stored_workflow.latest_workflow_id) out = [] for r in results: out.append( self.encode_all_ids( trans, r.to_dict(), True) ) @@ -449,13 +443,13 @@ try: stored_workflow = trans.sa_session.query(self.app.model.StoredWorkflow).get(trans.security.decode_id(workflow_id)) - except Exception, e: + except Exception: raise exceptions.ObjectNotFound() # check to see if user has permissions to selected workflow if stored_workflow.user != trans.user and not trans.user_is_admin(): if trans.sa_session.query(trans.app.model.StoredWorkflowUserShareAssociation).filter_by(user=trans.user, stored_workflow=stored_workflow).count() == 0: raise exceptions.ItemOwnershipException() - results = trans.sa_session.query(self.app.model.WorkflowInvocation).filter(self.app.model.WorkflowInvocation.workflow_id==stored_workflow.latest_workflow_id) + results = trans.sa_session.query(self.app.model.WorkflowInvocation).filter(self.app.model.WorkflowInvocation.workflow_id == stored_workflow.latest_workflow_id) results = results.filter(self.app.model.WorkflowInvocation.id == trans.security.decode_id(usage_id)) out = results.first() if out is not None: https://bitbucket.org/galaxy/galaxy-central/commits/82a80300b9a1/ Changeset: 82a80300b9a1 User: dannon Date: 2014-07-10 23:22:01 Summary: Update simple filters in workflows api to use filter_by where appropriate, instead of the heavier weight filter. Affected #: 1 file diff -r 50f84f60b60b8bfe307994431676a56ae2e97582 -r 82a80300b9a101072ea614de5424ec76ebae9340 lib/galaxy/webapps/galaxy/api/workflows.py --- a/lib/galaxy/webapps/galaxy/api/workflows.py +++ b/lib/galaxy/webapps/galaxy/api/workflows.py @@ -420,7 +420,7 @@ if stored_workflow.user != trans.user and not trans.user_is_admin(): if trans.sa_session.query(trans.app.model.StoredWorkflowUserShareAssociation).filter_by(user=trans.user, stored_workflow=stored_workflow).count() == 0: raise exceptions.ItemOwnershipException() - results = trans.sa_session.query(self.app.model.WorkflowInvocation).filter(self.app.model.WorkflowInvocation.workflow_id == stored_workflow.latest_workflow_id) + results = trans.sa_session.query(self.app.model.WorkflowInvocation).filter_by(workflow_id=stored_workflow.latest_workflow_id) out = [] for r in results: out.append( self.encode_all_ids( trans, r.to_dict(), True) ) @@ -449,8 +449,8 @@ if stored_workflow.user != trans.user and not trans.user_is_admin(): if trans.sa_session.query(trans.app.model.StoredWorkflowUserShareAssociation).filter_by(user=trans.user, stored_workflow=stored_workflow).count() == 0: raise exceptions.ItemOwnershipException() - results = trans.sa_session.query(self.app.model.WorkflowInvocation).filter(self.app.model.WorkflowInvocation.workflow_id == stored_workflow.latest_workflow_id) - results = results.filter(self.app.model.WorkflowInvocation.id == trans.security.decode_id(usage_id)) + results = trans.sa_session.query(self.app.model.WorkflowInvocation).filter_by(workflow_id=stored_workflow.latest_workflow_id) + results = results.filter_by(id=trans.security.decode_id(usage_id)) out = results.first() if out is not None: return self.encode_all_ids( trans, out.to_dict('element'), True) Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: dannon: Fix style of previous remote user change.
by commits-noreply＠bitbucket.org 10 Jul '14

10 Jul '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/2d31b83e2a41/ Changeset: 2d31b83e2a41 User: dannon Date: 2014-07-10 22:30:11 Summary: Fix style of previous remote user change. Affected #: 1 file diff -r a3fef3c3f644d87ab00bdf3e1962376f405e31c0 -r 2d31b83e2a412cbd07d32a842fa1e51d1a8dc033 lib/galaxy/web/framework/middleware/remoteuser.py --- a/lib/galaxy/web/framework/middleware/remoteuser.py +++ b/lib/galaxy/web/framework/middleware/remoteuser.py @@ -94,8 +94,8 @@ pass # toolbox filters can be managed when remote_user is in use elif path_info.startswith( '/user/set_default_permissions' ): pass # default permissions can be managed when remote_user is in use - elif path_info == '/user' or path_info =='/user/': - pass # We do allow access to the root user preferences page. + elif path_info == '/user' or path_info == '/user/': + pass # We do allow access to the root user preferences page. elif path_info.startswith( '/user' ): # Any other endpoint in the user controller is off limits title = "Access to Galaxy user controls is disabled" Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: dannon: External Auth: this change allows users when use_remote_user is in action to
by commits-noreply＠bitbucket.org 10 Jul '14

10 Jul '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/a3fef3c3f644/ Changeset: a3fef3c3f644 User: dannon Date: 2014-07-10 22:24:29 Summary: External Auth: this change allows users when use_remote_user is in action to navigate to the user preferences page. This specifically allows use of toolbox filters, and default permission setting on new histories as new functionality w/ external auth. Also added shortcut for whitelist comparison for non-user-controller requests. Affected #: 2 files diff -r a129d77f8d203d4db7940dbd0b9fdc8c48436781 -r a3fef3c3f644d87ab00bdf3e1962376f405e31c0 lib/galaxy/web/framework/middleware/remoteuser.py --- a/lib/galaxy/web/framework/middleware/remoteuser.py +++ b/lib/galaxy/web/framework/middleware/remoteuser.py @@ -76,7 +76,11 @@ before you may access Galaxy. """ return self.error( start_response, title, message ) - if path_info.startswith( '/user/create' ) and environ[ self.remote_user_header ] in self.admin_users: + if not path_info.startswith('/user'): + # shortcut the following whitelist for non-user-controller + # requests. + pass + elif path_info.startswith( '/user/create' ) and environ[ self.remote_user_header ] in self.admin_users: pass # admins can create users elif path_info.startswith( '/user/logout' ) and environ[ self.remote_user_header ] in self.admin_users: pass # Admin users may be impersonating, allow logout. @@ -86,7 +90,14 @@ pass # username can be managed when remote_user is in use elif path_info.startswith( '/user/dbkeys' ): pass # dbkeys can be managed when remote_user is in use + elif path_info.startswith( '/user/toolbox_filters' ): + pass # toolbox filters can be managed when remote_user is in use + elif path_info.startswith( '/user/set_default_permissions' ): + pass # default permissions can be managed when remote_user is in use + elif path_info == '/user' or path_info =='/user/': + pass # We do allow access to the root user preferences page. elif path_info.startswith( '/user' ): + # Any other endpoint in the user controller is off limits title = "Access to Galaxy user controls is disabled" message = """ User controls are disabled when Galaxy is configured diff -r a129d77f8d203d4db7940dbd0b9fdc8c48436781 -r a3fef3c3f644d87ab00bdf3e1962376f405e31c0 templates/user/index.mako --- a/templates/user/index.mako +++ b/templates/user/index.mako @@ -10,11 +10,13 @@ <p>You are currently logged in as ${trans.user.email}.</p><ul> %if t.webapp.name == 'galaxy': - <li><a href="${h.url_for( controller='user', action='manage_user_info', cntrller=cntrller )}">${_('Manage your information')}</a></li> + %if not trans.app.config.use_remote_user: + <li><a href="${h.url_for( controller='user', action='manage_user_info', cntrller=cntrller )}">${_('Manage your information')}</a></li> + %endif <li><a href="${h.url_for( controller='user', action='set_default_permissions', cntrller=cntrller )}">${_('Change default permissions')}</a> for new histories</li><li><a href="${h.url_for( controller='user', action='api_keys', cntrller=cntrller )}">${_('Manage your API keys')}</a></li><li><a href="${h.url_for( controller='user', action='toolbox_filters', cntrller=cntrller )}">${_('Manage your ToolBox filters')}</a></li> - %if trans.app.config.enable_openid: + %if trans.app.config.enable_openid and not trans.app.config.use_remote_user: <li><a href="${h.url_for( controller='user', action='openid_manage', cntrller=cntrller )}">${_('Manage OpenIDs')}</a> linked to your account</li> %endif %if trans.app.config.use_remote_user: Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: dannon: Change behavior on creation of workflow to kick directly into the edit window, instead of going back to the workflow list from which you can click more times to go back to work on your new workflow.
by commits-noreply＠bitbucket.org 10 Jul '14

10 Jul '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/a129d77f8d20/ Changeset: a129d77f8d20 User: dannon Date: 2014-07-10 21:33:33 Summary: Change behavior on creation of workflow to kick directly into the edit window, instead of going back to the workflow list from which you can click more times to go back to work on your new workflow. Affected #: 1 file diff -r 1d09105e1cade84ebacfe48ef4739266f3f073ca -r a129d77f8d203d4db7940dbd0b9fdc8c48436781 lib/galaxy/webapps/galaxy/controllers/workflow.py --- a/lib/galaxy/webapps/galaxy/controllers/workflow.py +++ b/lib/galaxy/webapps/galaxy/controllers/workflow.py @@ -227,7 +227,7 @@ @web.expose def display_by_username_and_slug( self, trans, username, slug, format='html' ): - """ + """ Display workflow based on a username and slug. Format can be html, json, or json-download. """ @@ -236,7 +236,7 @@ user = session.query( model.User ).filter_by( username=username ).first() stored_workflow = trans.sa_session.query( model.StoredWorkflow ).filter_by( user=user, slug=slug, deleted=False ).first() encoded_id = trans.security.encode_id( stored_workflow.id ) - + # Display workflow in requested format. if format == 'html': return self._display( trans, stored_workflow ) @@ -580,9 +580,7 @@ session = trans.sa_session session.add( stored_workflow ) session.flush() - # Display the management page - trans.set_message( "Workflow '%s' created" % stored_workflow.name ) - return self.list( trans ) + return self.editor( trans, id=trans.security.encode_id(stored_workflow.id )) else: return form( url_for(controller="workflow", action="create"), "Create New Workflow", submit_text="Create", use_panels=True ) \ .add_text( "workflow_name", "Workflow Name", value="Unnamed workflow" ) \ @@ -1224,7 +1222,7 @@ # Index page with message workflow_id = trans.security.encode_id( stored_workflow.id ) return trans.show_message( 'Workflow "%s" created from current history. You can <a href="%s" target="_parent">edit</a> or <a href="%s">run</a> the workflow.' % - ( workflow_name, url_for( controller='workflow', action='editor', id=workflow_id ), + ( workflow_name, url_for( controller='workflow', action='editor', id=workflow_id ), url_for( controller='workflow', action='run', id=workflow_id ) ) ) @web.expose Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: 4 new changesets
by commits-noreply＠bitbucket.org 10 Jul '14

10 Jul '14

4 new commits in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/6249e3b45f80/ Changeset: 6249e3b45f80 User: dannon Date: 2014-07-10 20:31:35 Summary: Initial implementation adding tool input ids to rename action. Whole thing needs some prettification and refactoring, still, but this will at least make it usable for folks. Affected #: 3 files diff -r 06b64928f4a4da6384d0717fc9bb650aa5e307eb -r 6249e3b45f8039099fa696a35f237d898a7ab626 lib/galaxy/jobs/actions/post.py --- a/lib/galaxy/jobs/actions/post.py +++ b/lib/galaxy/jobs/actions/post.py @@ -215,6 +215,15 @@ p_str += "<label for='pja__"+pja.output_name+"__RenameDatasetAction__newname'>New output name:</label>\ <input type='text' name='pja__"+pja.output_name+"__RenameDatasetAction__newname' value=''/>"; } + inputlist = []; + $.each(node.input_terminals, function(i, v){ + inputlist.push(v.name); + }); + if (inputlist !== []){ + p_str += "Available inputs are: <strong>" + inputlist.join(', ') + "</strong>"; + }else{ + p_str += "No inputs are available for templating into this action."; + } """ return get_form_template(cls.name, cls.verbose_name, form, "This action will rename the result dataset.") diff -r 06b64928f4a4da6384d0717fc9bb650aa5e307eb -r 6249e3b45f8039099fa696a35f237d898a7ab626 static/scripts/galaxy.workflows.js --- a/static/scripts/galaxy.workflows.js +++ b/static/scripts/galaxy.workflows.js @@ -361,7 +361,7 @@ // This function preloads how to display known pja's. function display_pja(pja, node) { // DBTODO SANITIZE INPUTS. - $("#pja_container").append( get_pja_form(pja) ); + $("#pja_container").append( get_pja_form(pja, node) ); $("#pja_container>.toolForm:last>.toolFormTitle>.buttons").click(function (){ action_to_rem = $(this).closest(".toolForm", ".action_tag").children(".action_tag:first").text(); $(this).closest(".toolForm").remove(); diff -r 06b64928f4a4da6384d0717fc9bb650aa5e307eb -r 6249e3b45f8039099fa696a35f237d898a7ab626 templates/webapps/galaxy/workflow/editor.mako --- a/templates/webapps/galaxy/workflow/editor.mako +++ b/templates/webapps/galaxy/workflow/editor.mako @@ -65,7 +65,7 @@ %> // Post-job action vars. var pja_list = "${ActionBox.get_add_list()}", - get_pja_form = function(pja) { + get_pja_form = function(pja, node) { var p_str = ''; // FIXME: this writes JS code; this logic should be codified in galaxy.workflows.js ${ActionBox.get_forms(trans)} https://bitbucket.org/galaxy/galaxy-central/commits/c32e9cecb879/ Changeset: c32e9cecb879 User: dannon Date: 2014-07-10 20:31:51 Summary: Merge. Affected #: 142 files diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf .hgtags --- a/.hgtags +++ b/.hgtags @@ -9,4 +9,4 @@ 9e53251b0b7e93b9563008a2b112f2e815a04bbc release_2014.04.14 68a8b0397947c732b28207d465d3f3c4e2a7a8a0 latest_2014.04.14 7e257c7b10badb65772b1528cb61d58175a42e47 release_2014.06.02 -9b78595ec1142d75930dbfffd8baeaa689cb4c6c latest_2014.06.02 +8a863a311a6c9f14b302799bffcf94df9186fef7 latest_2014.06.02 diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf config/plugins/visualizations/charts/static/app.js --- a/config/plugins/visualizations/charts/static/app.js +++ b/config/plugins/visualizations/charts/static/app.js @@ -1,26 +1,26 @@ // dependencies define(['mvc/ui/ui-modal', 'mvc/ui/ui-portlet', 'plugin/library/ui', 'utils/utils', - 'plugin/library/jobs', 'plugin/library/datasets', 'plugin/library/storage', + 'plugin/library/jobs', 'plugin/library/datasets', 'plugin/library/storage', 'plugin/library/deferred', 'plugin/views/viewer', 'plugin/views/editor', 'plugin/models/config', 'plugin/models/chart', 'plugin/charts/types'], - function( Modal, Portlet, Ui, Utils, Jobs, Datasets, Storage, + function( Modal, Portlet, Ui, Utils, Jobs, Datasets, Storage, Deferred, ViewerView, EditorView, Config, Chart, Types ) { -// widget -return Backbone.View.extend( -{ +/** + * Main application class. + */ +return Backbone.View.extend({ // initialize - initialize: function(options) - { + initialize: function(options){ // deactivate all debugs outputs //window.console.debug = function() {}; // link options this.options = options; - + // link galaxy modal or create one if (Galaxy && Galaxy.modal) { this.modal = Galaxy.modal; @@ -41,6 +41,7 @@ this.jobs = new Jobs(this); this.datasets = new Datasets(this); this.storage = new Storage(this); + this.deferred = new Deferred(); // // views @@ -62,7 +63,7 @@ // draw chart var self = this; - this.chart.deferred.execute(function() { + this.deferred.execute(function() { self.chart.trigger('redraw'); }); } @@ -100,19 +101,6 @@ console.debug('FAILED App:chartPath() - Invalid format: ' + chart_type); } return undefined; - }, - - // execute command - execute: function(options) { - }, - - // unload - onunload: function() { - }, - - // log - log: function(location, message) { - console.log(location + ' ' + message); } }); diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf config/plugins/visualizations/charts/static/build-app.js --- a/config/plugins/visualizations/charts/static/build-app.js +++ b/config/plugins/visualizations/charts/static/build-app.js @@ -3,4 +3,4 @@ // (c) 2009-2013 Jeremy Ashkenas, DocumentCloud Inc. // Underscore may be freely distributed under the MIT license. -define("mvc/ui/ui-modal",[],function(){var e=Backbone.View.extend({elMain:"body",optionsDefault:{title:"ui-modal",body:"",backdrop:!0,height:null,width:null,closing_events:!1,closing_callback:null},buttonList:{},initialize:function(e){e&&this._create(e)},show:function(e){this.initialize(e),this.options.height?(this.$body.css("height",this.options.height),this.$body.css("overflow","hidden")):this.$body.css("max-height",$(window).height()/2),this.options.width&&this.$dialog.css("width",this.options.width),this.visible?this.$el.show():this.$el.fadeIn("fast"),this.visible=!0},hide:function(){this.visible=!1,this.$el.fadeOut("fast"),this.options.closing_callback&&this.options.closing_callback()},enableButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).prop("disabled",!1)},disableButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).prop("disabled",!0)},showButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).show()},hideButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).hide()},getButton:function(e){var t=this.buttonList[e];return this.$buttons.find("#"+t)},scrollTop:function(){return this.$body.scrollTop()},_create:function(e){var t=this;this.options=_.defaults(e,this.optionsDefault),this.options.body=="progress"&&(this.options.body=$('<div class="progress progress-striped active"><div class="progress-bar progress-bar-info" style="width:100%"></div></div>')),this.$el&&(this.$el.remove(),$(document).off("keyup.ui-modal")),this.setElement(this._template(this.options.title)),this.$dialog=this.$el.find(".modal-dialog"),this.$body=this.$el.find(".modal-body"),this.$footer=this.$el.find(".modal-footer"),this.$buttons=this.$el.find(".buttons"),this.$backdrop=this.$el.find(".modal-backdrop"),this.$body.html(this.options.body),this.options.backdrop||this.$backdrop.removeClass("in");if(this.options.buttons){this.buttonList={};var n=0;$.each(this.options.buttons,function(e,r){var i="button-"+n++;t.$buttons.append($('<button id="'+i+'"></button>').text(e).click(r)).append(" "),t.buttonList[e]=i})}else this.$footer.hide();$(this.elMain).append($(this.el)),this.options.closing_events&&($(document).on("keyup.ui-modal",function(e){e.keyCode==27&&t.hide()}),this.$el.find(".modal-backdrop").on("click",function(){t.hide()}))},_template:function(e){return'<div class="ui-modal modal"><div class="modal-backdrop fade in" style="z-index: -1;"></div><div class="modal-dialog"><div class="modal-content"><div class="modal-header"><button type="button" class="close" style="display: none;">×</button><h4 class="title">'+e+"</h4>"+"</div>"+'<div class="modal-body" style="position: static;"></div>'+'<div class="modal-footer">'+'<div class="buttons" style="float: right;"></div>'+"</div>"+"</div"+"</div>"+"</div>"}});return{View:e}}),function(){var e=this,t=e._,n={},r=Array.prototype,i=Object.prototype,s=Function.prototype,o=r.push,u=r.slice,a=r.concat,f=i.toString,l=i.hasOwnProperty,c=r.forEach,h=r.map,p=r.reduce,d=r.reduceRight,v=r.filter,m=r.every,g=r.some,y=r.indexOf,b=r.lastIndexOf,w=Array.isArray,E=Object.keys,S=s.bind,x=function(e){if(e instanceof x)return e;if(!(this instanceof x))return new x(e);this._wrapped=e};typeof exports!="undefined"?(typeof module!="undefined"&&module.exports&&(exports=module.exports=x),exports._=x):e._=x,x.VERSION="1.4.4";var T=x.each=x.forEach=function(e,t,r){if(e==null)return;if(c&&e.forEach===c)e.forEach(t,r);else if(e.length===+e.length){for(var i=0,s=e.length;i<s;i++)if(t.call(r,e[i],i,e)===n)return}else for(var o in e)if(x.has(e,o)&&t.call(r,e[o],o,e)===n)return};x.map=x.collect=function(e,t,n){var r=[];return e==null?r:h&&e.map===h?e.map(t,n):(T(e,function(e,i,s){r.push(t.call(n,e,i,s))}),r)};var N="Reduce of empty array with no initial value";x.reduce=x.foldl=x.inject=function(e,t,n,r){var i=arguments.length>2;e==null&&(e=[]);if(p&&e.reduce===p)return r&&(t=x.bind(t,r)),i?e.reduce(t,n):e.reduce(t);T(e,function(e,s,o){i?n=t.call(r,n,e,s,o):(n=e,i=!0)});if(!i)throw new TypeError(N);return n},x.reduceRight=x.foldr=function(e,t,n,r){var i=arguments.length>2;e==null&&(e=[]);if(d&&e.reduceRight===d)return r&&(t=x.bind(t,r)),i?e.reduceRight(t,n):e.reduceRight(t);var s=e.length;if(s!==+s){var o=x.keys(e);s=o.length}T(e,function(u,a,f){a=o?o[--s]:--s,i?n=t.call(r,n,e[a],a,f):(n=e[a],i=!0)});if(!i)throw new TypeError(N);return n},x.find=x.detect=function(e,t,n){var r;return C(e,function(e,i,s){if(t.call(n,e,i,s))return r=e,!0}),r},x.filter=x.select=function(e,t,n){var r=[];return e==null?r:v&&e.filter===v?e.filter(t,n):(T(e,function(e,i,s){t.call(n,e,i,s)&&r.push(e)}),r)},x.reject=function(e,t,n){return x.filter(e,function(e,r,i){return!t.call(n,e,r,i)},n)},x.every=x.all=function(e,t,r){t||(t=x.identity);var i=!0;return e==null?i:m&&e.every===m?e.every(t,r):(T(e,function(e,s,o){if(!(i=i&&t.call(r,e,s,o)))return n}),!!i)};var C=x.some=x.any=function(e,t,r){t||(t=x.identity);var i=!1;return e==null?i:g&&e.some===g?e.some(t,r):(T(e,function(e,s,o){if(i||(i=t.call(r,e,s,o)))return n}),!!i)};x.contains=x.include=function(e,t){return e==null?!1:y&&e.indexOf===y?e.indexOf(t)!=-1:C(e,function(e){return e===t})},x.invoke=function(e,t){var n=u.call(arguments,2),r=x.isFunction(t);return x.map(e,function(e){return(r?t:e[t]).apply(e,n)})},x.pluck=function(e,t){return x.map(e,function(e){return e[t]})},x.where=function(e,t,n){return x.isEmpty(t)?n?void 0:[]:x[n?"find":"filter"](e,function(e){for(var n in t)if(t[n]!==e[n])return!1;return!0})},x.findWhere=function(e,t){return x.where(e,t,!0)},x.max=function(e,t,n){if(!t&&x.isArray(e)&&e[0]===+e[0]&&e.length<65535)return Math.max.apply(Math,e);if(!t&&x.isEmpty(e))return-Infinity;var r={computed:-Infinity,value:-Infinity};return T(e,function(e,i,s){var o=t?t.call(n,e,i,s):e;o>=r.computed&&(r={value:e,computed:o})}),r.value},x.min=function(e,t,n){if(!t&&x.isArray(e)&&e[0]===+e[0]&&e.length<65535)return Math.min.apply(Math,e);if(!t&&x.isEmpty(e))return Infinity;var r={computed:Infinity,value:Infinity};return T(e,function(e,i,s){var o=t?t.call(n,e,i,s):e;o<r.computed&&(r={value:e,computed:o})}),r.value},x.shuffle=function(e){var t,n=0,r=[];return T(e,function(e){t=x.random(n++),r[n-1]=r[t],r[t]=e}),r};var k=function(e){return x.isFunction(e)?e:function(t){return t[e]}};x.sortBy=function(e,t,n){var r=k(t);return x.pluck(x.map(e,function(e,t,i){return{value:e,index:t,criteria:r.call(n,e,t,i)}}).sort(function(e,t){var n=e.criteria,r=t.criteria;if(n!==r){if(n>r||n===void 0)return 1;if(n<r||r===void 0)return-1}return e.index<t.index?-1:1}),"value")};var L=function(e,t,n,r){var i={},s=k(t==null?x.identity:t);return T(e,function(t,o){var u=s.call(n,t,o,e);r(i,u,t)}),i};x.groupBy=function(e,t,n){return L(e,t,n,function(e,t,n){(x.has(e,t)?e[t]:e[t]=[]).push(n)})},x.countBy=function(e,t,n){return L(e,t,n,function(e,t){x.has(e,t)||(e[t]=0),e[t]++})},x.sortedIndex=function(e,t,n,r){n=n==null?x.identity:k(n);var i=n.call(r,t),s=0,o=e.length;while(s<o){var u=s+o>>>1;n.call(r,e[u])<i?s=u+1:o=u}return s},x.toArray=function(e){return e?x.isArray(e)?u.call(e):e.length===+e.length?x.map(e,x.identity):x.values(e):[]},x.size=function(e){return e==null?0:e.length===+e.length?e.length:x.keys(e).length},x.first=x.head=x.take=function(e,t,n){return e==null?void 0:t!=null&&!n?u.call(e,0,t):e[0]},x.initial=function(e,t,n){return u.call(e,0,e.length-(t==null||n?1:t))},x.last=function(e,t,n){return e==null?void 0:t!=null&&!n?u.call(e,Math.max(e.length-t,0)):e[e.length-1]},x.rest=x.tail=x.drop=function(e,t,n){return u.call(e,t==null||n?1:t)},x.compact=function(e){return x.filter(e,x.identity)};var A=function(e,t,n){return T(e,function(e){x.isArray(e)?t?o.apply(n,e):A(e,t,n):n.push(e)}),n};x.flatten=function(e,t){return A(e,t,[])},x.without=function(e){return x.difference(e,u.call(arguments,1))},x.uniq=x.unique=function(e,t,n,r){x.isFunction(t)&&(r=n,n=t,t=!1);var i=n?x.map(e,n,r):e,s=[],o=[];return T(i,function(n,r){if(t?!r||o[o.length-1]!==n:!x.contains(o,n))o.push(n),s.push(e[r])}),s},x.union=function(){return x.uniq(a.apply(r,arguments))},x.intersection=function(e){var t=u.call(arguments,1);return x.filter(x.uniq(e),function(e){return x.every(t,function(t){return x.indexOf(t,e)>=0})})},x.difference=function(e){var t=a.apply(r,u.call(arguments,1));return x.filter(e,function(e){return!x.contains(t,e)})},x.zip=function(){var e=u.call(arguments),t=x.max(x.pluck(e,"length")),n=new Array(t);for(var r=0;r<t;r++)n[r]=x.pluck(e,""+r);return n},x.unzip=function(e){var t=[];return x.each(e,function(e,n){x.each(e,function(e,r){t.length<=r&&(t[r]=[]),t[r][n]=e})}),t},x.object=function(e,t){if(e==null)return{};var n={};for(var r=0,i=e.length;r<i;r++)t?n[e[r]]=t[r]:n[e[r][0]]=e[r][1];return n},x.indexOf=function(e,t,n){if(e==null)return-1;var r=0,i=e.length;if(n){if(typeof n!="number")return r=x.sortedIndex(e,t),e[r]===t?r:-1;r=n<0?Math.max(0,i+n):n}if(y&&e.indexOf===y)return e.indexOf(t,n);for(;r<i;r++)if(e[r]===t)return r;return-1},x.lastIndexOf=function(e,t,n){if(e==null)return-1;var r=n!=null;if(b&&e.lastIndexOf===b)return r?e.lastIndexOf(t,n):e.lastIndexOf(t);var i=r?n:e.length;while(i--)if(e[i]===t)return i;return-1},x.range=function(e,t,n){arguments.length<=1&&(t=e||0,e=0),n=arguments[2]||1;var r=Math.max(Math.ceil((t-e)/n),0),i=0,s=new Array(r);while(i<r)s[i++]=e,e+=n;return s};var O=function(){};x.bind=function(e,t){var n,r;if(e.bind===S&&S)return S.apply(e,u.call(arguments,1));if(!x.isFunction(e))throw new TypeError;return n=u.call(arguments,2),r=function(){if(this instanceof r){O.prototype=e.prototype;var i=new O;O.prototype=null;var s=e.apply(i,n.concat(u.call(arguments)));return Object(s)===s?s:i}return e.apply(t,n.concat(u.call(arguments)))}},x.partial=function(e){var t=u.call(arguments,1);return function(){return e.apply(this,t.concat(u.call(arguments)))}},x.bindAll=function(e){var t=u.call(arguments,1);if(t.length===0)throw new Error("bindAll must be passed function names");return T(t,function(t){e[t]=x.bind(e[t],e)}),e},x.memoize=function(e,t){var n={};return t||(t=x.identity),function(){var r=t.apply(this,arguments);return x.has(n,r)?n[r]:n[r]=e.apply(this,arguments)}},x.delay=function(e,t){var n=u.call(arguments,2);return setTimeout(function(){return e.apply(null,n)},t)},x.defer=function(e){return x.delay.apply(x,[e,1].concat(u.call(arguments,1)))},x.throttle=function(e,t,n){var r,i,s,o,u=0,a=function(){u=new Date,s=null,o=e.apply(r,i)};return function(){var f=new Date;!u&&n===!1&&(u=f);var l=t-(f-u);return r=this,i=arguments,l<=0?(clearTimeout(s),s=null,u=f,o=e.apply(r,i)):s||(s=setTimeout(a,l)),o}},x.debounce=function(e,t,n){var r,i;return function(){var s=this,o=arguments,u=function(){r=null,n||(i=e.apply(s,o))},a=n&&!r;return clearTimeout(r),r=setTimeout(u,t),a&&(i=e.apply(s,o)),i}},x.once=function(e){var t=!1,n;return function(){return t?n:(t=!0,n=e.apply(this,arguments),e=null,n)}},x.wrap=function(e,t){return function(){var n=[e];return o.apply(n,arguments),t.apply(this,n)}},x.compose=function(){var e=arguments;return function(){var t=arguments;for(var n=e.length-1;n>=0;n--)t=[e[n].apply(this,t)];return t[0]}},x.after=function(e,t){return e<=0?t():function(){if(--e<1)return t.apply(this,arguments)}},x.keys=E||function(e){if(e!==Object(e))throw new TypeError("Invalid object");var t=[];for(var n in e)x.has(e,n)&&t.push(n);return t},x.values=function(e){var t=[];for(var n in e)x.has(e,n)&&t.push(e[n]);return t},x.pairs=function(e){var t=[];for(var n in e)x.has(e,n)&&t.push([n,e[n]]);return t},x.invert=function(e){var t={};for(var n in e)x.has(e,n)&&(t[e[n]]=n);return t},x.functions=x.methods=function(e){var t=[];for(var n in e)x.isFunction(e[n])&&t.push(n);return t.sort()},x.extend=function(e){return T(u.call(arguments,1),function(t){if(t)for(var n in t)e[n]=t[n]}),e},x.pick=function(e){var t={},n=a.apply(r,u.call(arguments,1));return T(n,function(n){n in e&&(t[n]=e[n])}),t},x.omit=function(e){var t={},n=a.apply(r,u.call(arguments,1));for(var i in e)x.contains(n,i)||(t[i]=e[i]);return t},x.defaults=function(e){return T(u.call(arguments,1),function(t){if(t)for(var n in t)e[n]===void 0&&(e[n]=t[n])}),e},x.clone=function(e){return x.isObject(e)?x.isArray(e)?e.slice():x.extend({},e):e},x.tap=function(e,t){return t(e),e};var M=function(e,t,n,r){if(e===t)return e!==0||1/e==1/t;if(e==null||t==null)return e===t;e instanceof x&&(e=e._wrapped),t instanceof x&&(t=t._wrapped);var i=f.call(e);if(i!=f.call(t))return!1;switch(i){case"[object String]":return e==String(t);case"[object Number]":return e!=+e?t!=+t:e==0?1/e==1/t:e==+t;case"[object Date]":case"[object Boolean]":return+e==+t;case"[object RegExp]":return e.source==t.source&&e.global==t.global&&e.multiline==t.multiline&&e.ignoreCase==t.ignoreCase}if(typeof e!="object"||typeof t!="object")return!1;var s=n.length;while(s--)if(n[s]==e)return r[s]==t;n.push(e),r.push(t);var o=0,u=!0;if(i=="[object Array]"){o=e.length,u=o==t.length;if(u)while(o--)if(!(u=M(e[o],t[o],n,r)))break}else{var a=e.constructor,l=t.constructor;if(a!==l&&!(x.isFunction(a)&&a instanceof a&&x.isFunction(l)&&l instanceof l))return!1;for(var c in e)if(x.has(e,c)){o++;if(!(u=x.has(t,c)&&M(e[c],t[c],n,r)))break}if(u){for(c in t)if(x.has(t,c)&&!(o--))break;u=!o}}return n.pop(),r.pop(),u};x.isEqual=function(e,t){return M(e,t,[],[])},x.isEmpty=function(e){if(e==null)return!0;if(x.isArray(e)||x.isString(e))return e.length===0;for(var t in e)if(x.has(e,t))return!1;return!0},x.isElement=function(e){return!!e&&e.nodeType===1},x.isArray=w||function(e){return f.call(e)=="[object Array]"},x.isObject=function(e){return e===Object(e)},T(["Arguments","Function","String","Number","Date","RegExp"],function(e){x["is"+e]=function(t){return f.call(t)=="[object "+e+"]"}}),x.isArguments(arguments)||(x.isArguments=function(e){return!!e&&!!x.has(e,"callee")}),typeof /./!="function"&&(x.isFunction=function(e){return typeof e=="function"}),x.isFinite=function(e){return isFinite(e)&&!isNaN(parseFloat(e))},x.isNaN=function(e){return x.isNumber(e)&&e!=+e},x.isBoolean=function(e){return e===!0||e===!1||f.call(e)=="[object Boolean]"},x.isNull=function(e){return e===null},x.isUndefined=function(e){return e===void 0},x.has=function(e,t){return l.call(e,t)},x.noConflict=function(){return e._=t,this},x.identity=function(e){return e},x.times=function(e,t,n){var r=Array(e);for(var i=0;i<e;i++)r[i]=t.call(n,i);return r},x.random=function(e,t){return t==null&&(t=e,e=0),e+Math.floor(Math.random()*(t-e+1))};var _={escape:{"&":"&","<":"<",">":">",'"':""","'":"'","/":"/"}};_.unescape=x.invert(_.escape);var D={escape:new RegExp("["+x.keys(_.escape).join("")+"]","g"),unescape:new RegExp("("+x.keys(_.unescape).join("|")+")","g")};x.each(["escape","unescape"],function(e){x[e]=function(t){return t==null?"":(""+t).replace(D[e],function(t){return _[e][t]})}}),x.result=function(e,t){if(e==null)return void 0;var n=e[t];return x.isFunction(n)?n.call(e):n},x.mixin=function(e){T(x.functions(e),function(t){var n=x[t]=e[t];x.prototype[t]=function(){var e=[this._wrapped];return o.apply(e,arguments),F.call(this,n.apply(x,e))}})};var P=0;x.uniqueId=function(e){var t=++P+"";return e?e+t:t},x.templateSettings={evaluate:/<%([\s\S]+?)%>/g,interpolate:/<%=([\s\S]+?)%>/g,escape:/<%-([\s\S]+?)%>/g};var H=/(.)^/,B={"'":"'","\\":"\\","\r":"r","\n":"n"," ":"t","\u2028":"u2028","\u2029":"u2029"},j=/\\|'|\r|\n|\t|\u2028|\u2029/g;x.template=function(e,t,n){var r;n=x.defaults({},n,x.templateSettings);var i=new RegExp([(n.escape||H).source,(n.interpolate||H).source,(n.evaluate||H).source].join("|")+"|$","g"),s=0,o="__p+='";e.replace(i,function(t,n,r,i,u){return o+=e.slice(s,u).replace(j,function(e){return"\\"+B[e]}),n&&(o+="'+\n((__t=("+n+"))==null?'':_.escape(__t))+\n'"),r&&(o+="'+\n((__t=("+r+"))==null?'':__t)+\n'"),i&&(o+="';\n"+i+"\n__p+='"),s=u+t.length,t}),o+="';\n",n.variable||(o="with(obj||{}){\n"+o+"}\n"),o="var __t,__p='',__j=Array.prototype.join,print=function(){__p+=__j.call(arguments,'');};\n"+o+"return __p;\n";try{r=new Function(n.variable||"obj","_",o)}catch(u){throw u.source=o,u}if(t)return r(t,x);var a=function(e){return r.call(this,e,x)};return a.source="function("+(n.variable||"obj")+"){\n"+o+"}",a},x.chain=function(e){return x(e).chain()};var F=function(e){return this._chain?x(e).chain():e};x.mixin(x),T(["pop","push","reverse","shift","sort","splice","unshift"],function(e){var t=r[e];x.prototype[e]=function(){var n=this._wrapped;return t.apply(n,arguments),(e=="shift"||e=="splice")&&n.length===0&&delete n[0],F.call(this,n)}}),T(["concat","join","slice"],function(e){var t=r[e];x.prototype[e]=function(){return F.call(this,t.apply(this._wrapped,arguments))}}),x.extend(x.prototype,{chain:function(){return this._chain=!0,this},value:function(){return this._wrapped}})}.call(this),define("libs/underscore",function(e){return function(){var t,n;return t||e._}}(this)),define("utils/utils",["libs/underscore"],function(e){function t(e,t,r){n("GET",e,{},t,r)}function n(e,t,n,r,i){if(e=="GET"||e=="DELETE")t.indexOf("?")==-1?t+="?":t+="&",t+=$.param(n);var s=new XMLHttpRequest;s.open(e,t,!0),s.setRequestHeader("Accept","application/json"),s.setRequestHeader("Cache-Control","no-cache"),s.setRequestHeader("X-Requested-With","XMLHttpRequest"),s.setRequestHeader("Content-Type","application/json"),s.onloadend=function(){var e=s.status;try{response=jQuery.parseJSON(s.responseText)}catch(t){response=s.responseText}e==200?r&&r(response):i&&i(response)},e=="GET"||e=="DELETE"?s.send():s.send(JSON.stringify(n))}function r(e,t){var n=$('<div class="'+e+'"></div>');n.appendTo(":eq(0)");var r=n.css(t);return n.remove(),r}function i(e){$('link[href^="'+e+'"]').length||$('<link href="'+galaxy_config.root+e+'" rel="stylesheet">').appendTo("head")}function s(t,n){return t?e.defaults(t,n):n}function o(e,t){var n="";if(e>=1e11)e/=1e11,n="TB";else if(e>=1e8)e/=1e8,n="GB";else if(e>=1e5)e/=1e5,n="MB";else if(e>=100)e/=100,n="KB";else{if(!(e>0))return"<strong>-</strong>";e*=10,n="b"}var r=Math.round(e)/10;return t?r+" "+n:"<strong>"+r+"</strong> "+n}function u(){return"x"+Math.random().toString(36).substring(2,9)}function a(e){var t=$("<p></p>");return t.append(e),t}function f(){var e=new Date,t=(e.getHours()<10?"0":"")+e.getHours(),n=(e.getMinutes()<10?"0":"")+e.getMinutes(),r=e.getDate()+"/"+(e.getMonth()+1)+"/"+e.getFullYear()+", "+t+":"+n;return r}return{cssLoadFile:i,cssGetAttribute:r,get:t,merge:s,bytesToString:o,uuid:u,time:f,wrap:a,request:n}}),define("mvc/ui/ui-portlet",["utils/utils"],function(e){var t=Backbone.View.extend({visible:!1,optionsDefault:{title:"",icon:"",buttons:null,body:null,scrollable:!0,nopadding:!1,operations:null,placement:"bottom"},$title:null,$content:null,$buttons:null,$operations:null,initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.$content=this.$el.find("#content"),this.$title=this.$el.find("#portlet-header-text");var n=this.$el.find("#portlet-content");this.options.scrollable?n.addClass("scroll"):this.options.title?n.addClass("no-scroll"):n.addClass("no-scroll-no-title"),this.options.nopadding&&(n.css("padding","0px"),this.$content.css("padding","0px")),this.$buttons=$(this.el).find("#buttons");if(this.options.buttons){var r=this;$.each(this.options.buttons,function(e,t){t.$el.prop("id",e),r.$buttons.append(t.$el)})}else this.$buttons.remove();this.$operations=$(this.el).find("#operations");if(this.options.operations){var r=this;$.each(this.options.operations,function(e,t){t.$el.prop("id",e),r.$operations.append(t.$el)})}this.options.body&&this.append(this.options.body)},append:function(t){this.$content.append(e.wrap(t))},content:function(){return this.$content},show:function(){this.$el.fadeIn("fast"),this.visible=!0},hide:function(){this.$el.fadeOut("fast"),this.visible=!1},enableButton:function(e){this.$buttons.find("#"+e).prop("disabled",!1)},disableButton:function(e){this.$buttons.find("#"+e).prop("disabled",!0)},hideOperation:function(e){this.$operations.find("#"+e).hide()},showOperation:function(e){this.$operations.find("#"+e).show()},setOperation:function(e,t){var n=this.$operations.find("#"+e);n.off("click"),n.on("click",t)},title:function(e){var t=this.$title;return e&&t.html(e),t.html()},_template:function(e){var t='<div class="ui-portlet">';return e.title&&(t+='<div id="portlet-header" class="portlet-header"><div id="operations" style="float: right;"></div><h3>',e.icon&&(t+='<i class="icon fa '+e.icon+'"> </i>'),t+='<span id="portlet-header-text">'+e.title+"</span>"+"</h3>"+"</div>"),t+='<div id="portlet-content" class="portlet-content">',e.placement=="top"&&(t+='<div id="buttons" class="buttons"></div>'),t+='<div id="content" class="content"></div>',e.placement=="bottom"&&(t+='<div id="buttons" class="buttons"></div>'),t+="</div></div>",t}});return{View:t}}),define("plugin/library/ui-select",["utils/utils"],function(e){var t=Backbone.View.extend({optionsDefault:{id:"",cls:"",empty:"No data available",visible:!0,wait:!1},selected:null,initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.selected=this.options.value,this.setElement(this._template(this.options)),this.$select=this.$el.find("#select"),this.$icon=this.$el.find("#icon");var n=this;this.$select.on("change",function(){n.value(n.$select.val())}),this.on("change",function(){n.options.onchange&&n.options.onchange(n.value())}),this._refresh(),this.options.visible||this.hide(),this.options.wait?this.wait():this.show()},value:function(e){var t=this.selected;e!==undefined&&(this.selected=e,this.$select.val(e));var n=this.selected;return n&&n!=t&&this.options.onchange&&this.options.onchange(n),n},first:function(){var e=this.$select.find("option");return e.length>0?e.val():undefined},text:function(){return this.$select.find("option:selected").text()},show:function(){this.$icon.removeClass(),this.$icon.addClass("fa fa-caret-down"),this.$select.show(),this.$el.show()},hide:function(){this.$el.hide()},wait:function(){this.$icon.removeClass(),this.$icon.addClass("fa fa-spinner fa-spin"),this.$select.hide()},disabled:function(){return this.$select.is(":disabled")},enable:function(){this.$select.prop("disabled",!1)},disable:function(){this.$select.prop("disabled",!0)},add:function(e){this.$select.append(this._templateOption(e)),this._refresh()},del:function(e){this.$select.find("option[value="+e+"]").remove(),this.$select.trigger("change"),this._refresh()},update:function(e){this.$select.find("option").remove();for(var t in e)this.$select.append(this._templateOption(e[t]));this._refresh()},setOnChange:function(e){this.options.onchange=e},exists:function(e){return this.$select.find("option[value="+e+"]").length>0},_refresh:function(){this.$select.find("option[value=null]").remove();var e=this.$select.find("option").length;e==0?(this.disable(),this.$select.append(this._templateOption({value:"null",label:this.options.empty}))):this.enable(),this.selected&&this.$select.val(this.selected)},_templateOption:function(e){return'<option value="'+e.value+'">'+e.label+"</option>"},_template:function(e){var t='<div id="'+e.id+'" class="ui-select">'+'<div class="button">'+'<i id="icon"/>'+"</div>"+'<select id="select" class="select '+e.cls+" "+e.id+'">';for(key in e.data){var n=e.data[key],r="";if(n.value==e.value||n.value=="")r="selected";t+='<option value="'+n.value+'" '+r+">"+n.label+"</option>"}return t+="</select></div>",t}});return{View:t}}),define("plugin/library/ui-button-menu",["utils/utils"],function(e){return Backbone.View.extend({optionsDefault:{id:"",title:"","float":"right",icon:null,onclick:null,cls:"icon-btn",tooltip:"",target:"",href:"",onunload:null,visible:!0,tag:""},$menu:null,initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement($(this._template(this.options)));var n=$(this.el).find(".root"),r=this;n.on("click",function(e){$(".tooltip").hide(),e.preventDefault(),r.options.onclick&&r.options.onclick()}),this.options.visible||this.hide(),n.tooltip({title:t.tooltip,placement:"bottom"})},show:function(){$(this.el).show()},hide:function(){$(this.el).hide()},addMenu:function(t){var n={title:"",target:"",href:"",onclick:null,divider:!1,icon:null,cls:"button-menu btn-group"};n=e.merge(t,n),this.$menu||($(this.el).append(this._templateMenu()),this.$menu=$(this.el).find(".menu"));var r=$(this._templateMenuItem(n));r.on("click",function(e){e.preventDefault(),n.onclick&&n.onclick()}),this.$menu.append(r),n.divider&&this.$menu.append($(this._templateDivider()))},_templateMenuItem:function(e){var t='<li><a href="'+e.href+'" target="'+e.target+'">';return e.icon&&(t+='<i class="fa '+e.icon+'"></i>'),t+=" "+e.title+"</a>"+"</li>",t},_templateMenu:function(){return'<ul class="menu dropdown-menu pull-right" role="menu"></ul>'},_templateDivider:function(){return'<li class="divider"></li>'},_template:function(e){var t="";e.title&&(t="width: auto;");var n='<div id="'+e.id+'" style="float: '+e.float+"; "+t+'" class="ui-button-icon dropdown '+e.cls+'">';return e.title?n+='<div class="root button dropdown-toggle" data-toggle="dropdown"><i class="icon fa '+e.icon+'"/> '+'<span class="title">'+e.title+"</span>"+"</div>":n+='<i class="icon fa '+e.icon+'"/>',n+="</div>",n}})}),define("plugin/library/ui",["utils/utils","plugin/library/ui-select","plugin/library/ui-button-menu","mvc/ui/ui-modal"],function(e,t,n,r){var i=Backbone.View.extend({optionsDefault:{url:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options))},_template:function(e){return'<img class="ui-image '+e.cls+'" src="'+e.url+'"/>'}}),s=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options))},title:function(e){this.$el.html(e)},_template:function(e){return'<label class="ui-label '+e.cls+'">'+e.title+"</label>"},value:function(){return options.title}}),o=Backbone.View.extend({optionsDefault:{"float":"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){return'<div><span class="fa '+e.icon+'" class="ui-icon"/> '+e.title+"</div>"}}),u=Backbone.View.extend({optionsDefault:{id:null,title:"","float":"right",cls:"btn btn-default",icon:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",t.onclick),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){var t='<button id="'+e.id+'" type="submit" style="float: '+e.float+';" type="button" class="ui-button '+e.cls+'">';return e.icon&&(t+='<i class="icon fa '+e.icon+'"></i> '),t+=e.title+"</button>",t}}),a=Backbone.View.extend({optionsDefault:{id:null,title:"","float":"right",cls:"icon-btn",icon:"",tooltip:"",onclick:null},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",t.onclick),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){var t="";e.title&&(t="width: auto;");var n='<div id="'+e.id+'" style="float: '+e.float+"; "+t+'" class="ui-button-icon '+e.cls+'">';return e.title?n+='<div class="button"><i class="icon fa '+e.icon+'"/> '+'<span class="title">'+e.title+"</span>"+"</div>":n+='<i class="icon fa '+e.icon+'"/>',n+="</div>",n}}),f=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",t.onclick)},_template:function(e){return'<div><a href="javascript:void(0)" class="ui-anchor '+e.cls+'">'+e.title+"</a></div>"}}),l=Backbone.View.extend({optionsDefault:{message:"",status:"info",persistent:!1},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement("<div></div>")},update:function(t){this.options=e.merge(t,this.optionsDefault);if(t.message!=""){this.$el.html(this._template(this.options)),this.$el.find(".alert").append(t.message),this.$el.fadeIn();if(!t.persistent){var n=this;window.setTimeout(function(){n.$el.is(":visible")?n.$el.fadeOut():n.$el.hide()},3e3)}}else this.$el.fadeOut()},_template:function(e){return'<div class="ui-message alert alert-'+e.status+'"/>'}}),c=Backbone.View.extend({optionsDefault:{onclick:null,searchword:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options));var n=this;this.options.onclick&&this.$el.on("submit",function(e){var t=n.$el.find("#search");n.options.onclick(t.val())})},_template:function(e){return'<div class="ui-search"><form onsubmit="return false;"><input id="search" class="form-control input-sm" type="text" name="search" placeholder="Search..." value="'+e.searchword+'">'+'<button type="submit" class="btn search-btn">'+'<i class="fa fa-search"></i>'+"</button>"+"</form>"+"</div>"}}),h=Backbone.View.extend({optionsDefault:{value:"",type:"text",placeholder:"",disabled:!1,visible:!0,cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.options.disabled&&this.$el.prop("disabled",!0),this.options.visible||this.$el.hide();var n=this;this.$el.on("input",function(){n.options.onchange&&n.options.onchange(n.$el.val())})},value:function(e){return e!==undefined&&this.$el.val(e),this.$el.val()},_template:function(e){return'<input id="'+e.id+'" type="'+e.type+'" value="'+e.value+'" placeholder="'+e.placeholder+'" class="ui-input '+e.cls+'">'}}),p=Backbone.View.extend({optionsDefault:{value:"",type:"text",placeholder:"",disabled:!1,visible:!0,cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.options.disabled&&this.$el.prop("disabled",!0),this.options.visible||this.$el.hide();var n=this;this.$el.on("input",function(){n.options.onchange&&n.options.onchange(n.$el.val())})},value:function(e){return e!==undefined&&this.$el.val(e),this.$el.val()},_template:function(e){return'<textarea id="'+e.id+'" class="ui-textarea '+e.cls+'" rows="5"></textarea>'}}),d=Backbone.View.extend({optionsDefault:{value:"",visible:!0,cls:"",data:[],id:e.uuid()},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.options.visible||this.$el.hide(),this.options.value&&this.value(this.options.value),this.current=this.options.value;var n=this;this.$el.find("input").on("change",function(){n.value(n._getValue())})},value:function(e){var t=this.current;e!==undefined&&(this.$el.find("label").removeClass("active"),this.$el.find('[value="'+e+'"]').closest("label").addClass("active"),this.current=e);var n=this.current;return n!=t&&this.options.onchange&&this.options.onchange(this.current),this.current},_getValue:function(){var e=this.$el.find(":checked"),t=null;return e.length>0&&(t=e.val()),t},_template:function(e){var t='<div class="btn-group ui-radiobutton" data-toggle="buttons">';for(key in e.data){var n=e.data[key];t+='<label class="btn btn-default"><input type="radio" name="'+e.id+'" value="'+n.value+'" selected>'+n.label+"</label>"}return t+="</div>",t}});return{Label:s,Button:u,Icon:o,ButtonIcon:a,Input:h,Anchor:f,Message:l,Searchbox:c,Select:t,ButtonMenu:n,Modal:r,Textarea:p,Image:i,RadioButton:d}}),define("plugin/library/jobs",["utils/utils"],function(e){return Backbone.Model.extend({initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e,t,n,r,i){var s=this;e.state("wait","Requesting job results...");var o=e.get("dataset_id_job");o!=""?s._wait(e,r,i):s._submit(e,t,n,r,i)},cleanup:function(t){var n=this,r=t.get("dataset_id_job");r!=""&&(e.request("PUT",config.root+"api/histories/none/contents/"+r,{deleted:!0},function(){n._refreshHdas()}),t.set("dataset_id_job",""))},_submit:function(t,n,r,i,s){var o=this,u=t.id,a=t.get("type"),f=t.definition;data={tool_id:"charts",inputs:{input:{id:t.get("dataset_id"),src:"hda"},module:f.execute,columns:r,settings:n}},t.state("wait","Sending job request..."),e.request("POST",config.root+"api/tools",data,function(e){if(!e.outputs||e.outputs.length==0)t.state("failed","Job submission failed. No response."),s&&s();else{o._refreshHdas();var n=e.outputs[0];t.state("wait","Your job has been queued. You may close the browser window. The job will run in the background."),t.set("dataset_id_job",n.id),this.app.storage.save(),o._wait(t,i,s)}},function(e){var n="";e&&e.message&&e.message.data&&e.message.data.input&&(n=e.message.data.input+"."),t.state("failed","This visualization requires the 'charts' tool. Please make sure it is installed. "+n),s&&s()})},_wait:function(t,n,r){var i=this;e.request("GET",config.root+"api/datasets/"+t.get("dataset_id_job"),{},function(e){var s=!1;switch(e.state){case"ok":t.state("wait","Job completed successfully..."),n&&n(e),s=!0;break;case"error":t.state("failed","Job has failed. Please check the history for details."),r&&r(e),s=!0;break;case"running":t.state("wait","Your job is running. You may close the browser window. The job will continue in the background.")}s||setTimeout(function(){i._wait(t,n,r)},i.app.config.get("query_timeout"))})},_refreshHdas:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.refreshContents()}})}),define("plugin/library/datasets",["utils/utils"],function(e){return Backbone.Collection.extend({list:{},cache:{},initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e){e.groups?this._get_blocks(e):this._get_dataset(e.id,e.success,e.error)},_get_blocks:function(e){function h(i){c._get(i,function(){var s=!1;for(var o in e.groups){destination_group=e.groups[o],source_group=i.groups[o],destination_group.values||(destination_group.values=[]),destination_group.values=destination_group.values.concat(source_group.values);if(source_group.values.length==0){s=!0;break}}if(++l<a&&!s){n&&n(parseInt(l/a*100));var u=i.start+r;i=$.extend(!0,f,{start:u}),h(i)}else t()})}var t=e.success,n=e.progress,r=this.app.config.get("query_limit"),i=this.app.config.get("query_timeout"),s=e.start||0,o=s+e.query_limit||s+this.app.config.get("query_limit"),u=Math.abs(o-s);if(u<=0){console.debug("FAILED - Datasets::request() - Invalid query range.");return}var a=Math.ceil(u/r)||1,f=$.extend(!0,{},e),l=0,c=this,p=$.extend(!0,f,{start:s});this._get_dataset(e.id,function(){h(p)})},_get_dataset:function(t,n,r){var i=this.list[t];if(i){n(i);return}var s=this;e.request("GET",config.root+"api/datasets/"+t,{},function(e){switch(e.state){case"error":r&&r(e);break;default:s.list[t]=e,n(e)}})},_block_id:function(e,t){return e.id+"_"+e.start+"_"+e.start+this.app.config.get("query_limit")+"_"+t},_get:function(e,t){e.start=e.start||0;var n=[],r={},i=0;for(var s in e.groups){var o=e.groups[s];for(var u in o.columns){var a=o.columns[u].index,f=this._block_id(e,a);if(this.cache[f]||a==="auto"||a==="zero")continue;!r[a]&&a!==undefined&&(r[a]=i,n.push(a),i++)}}if(n.length==0){this._fill_from_cache(e),t(e);return}var l={dataset_id:e.id,start:e.start,columns:n},c=this;this._fetch(l,function(r){for(var i in r){var s=n[i],o=c._block_id(e,s);c.cache[o]=r[i]}c._fill_from_cache(e),t(e)})},_fill_from_cache:function(e){var t=e.start;console.debug("Datasets::_fill_from_cache() - Filling request from cache at "+t+".");var n=0;for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s],u=this._block_id(e,o.index),a=this.cache[u];a&&(n=Math.max(n,a.length))}}n==0&&console.debug("Datasets::_fill_from_cache() - Reached data range limit.");for(var r in e.groups){var i=e.groups[r];i.values=[];for(var f=0;f<n;f++)i.values[f]={x:parseInt(f)+t}}for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s];switch(o.index){case"auto":for(var f=0;f<n;f++){var l=i.values[f];l[s]=parseInt(f)+t}break;case"zero":for(var f=0;f<n;f++){var l=i.values[f];l[s]=0}break;default:var u=this._block_id(e,o.index),a=this.cache[u];for(var f=0;f<n;f++){var l=i.values[f],c=a[f];isNaN(c)&&!o.is_label&&(c=0),l[s]=c}}}}},_fetch:function(t,n){var r=t.start?t.start:0,i=this.app.config.get("query_limit"),s=0;t.columns&&(s=t.columns.length,console.debug("Datasets::_fetch() - Fetching "+s+" column(s) at "+r+".")),s==0&&console.debug("Datasets::_fetch() - No columns requested");var o="";for(var u in t.columns)o+=t.columns[u]+",";o=o.substring(0,o.length-1);var a=this;e.request("GET",config.root+"api/datasets/"+t.dataset_id,{data_type:"raw_data",provider:"dataset-column",limit:i,offset:r,indeces:o},function(e){var t=new Array(s);for(var r=0;r<s;r++)t[r]=[];for(var r in e.data){var i=e.data[r];for(var o in i){var u=i[o];u!==undefined&&u!=2147483647&&t[o].push(u)}}console.debug("Datasets::_fetch() - Fetching complete."),n(t)})}})}),define("plugin/models/group",[],function(){return Backbone.Model.extend({defaults:{key:"Data label",date:""},reset:function(){this.clear({silent:!0}).set(this.defaults),this.trigger("reset",this)}})}),define("plugin/models/groups",["plugin/models/group"],function(e){return Backbone.Collection.extend({model:e})}),define("plugin/library/deferred",["utils/utils"],function(e){return Backbone.Model.extend({queue:[],process:{},counter:0,initialize:function(){this.on("refresh",function(){for(var e in this.queue)if(this.counter==0){var t=this.queue[e];this.queue.splice(e,1),t()}})},execute:function(e){this.queue.push(e),this.trigger("refresh")},register:function(){var t=e.uuid();return this.process[t]=!0,this.counter++,console.debug("Deferred:register() - Registering "+t),t},done:function(e){this.process[e]&&(delete this.process[e],this.counter--,console.debug("Deferred:done() - Unregistering "+e),this.trigger("refresh"))},ready:function(){return this.counter==0}})});var Visualization=Backbone.Model.extend({defaults:{config:{}},urlRoot:function(){var e="/api/visualizations";return window.galaxy_config&&galaxy_config.root?galaxy_config.root+e:e},initialize:function(e){_.isObject(e.config)&&_.isObject(this.defaults.config)&&_.defaults(e.config,this.defaults.config),this._setUpListeners()},_setUpListeners:function(){},set:function(e,t){if(e==="config"){var n=this.get("config");_.isObject(n)&&(t=_.extend(_.clone(n),t))}return Backbone.Model.prototype.set.call(this,e,t),this},toString:function(){var e=this.get("id")||"";return this.get("title")&&(e+=":"+this.get("title")),"Visualization("+e+")"}}),VisualizationCollection=Backbone.Collection.extend({model:Visualization,url:function(){return galaxy_config.root+"api/visualizations"},initialize:function(e,t){t=t||{}},set:function(e,t){var n=this;e=_.map(e,function(e){var t=n.get(e.id);if(!t)return e;var r=t.toJSON();return _.extend(r,e),r}),Backbone.Collection.prototype.set.call(this,e,t)},toString:function(){return["VisualizationCollection(",[this.historyId,this.length].join(),")"].join("")}});define("mvc/visualization/visualization-model",function(){}),define("plugin/models/chart",["plugin/models/groups","plugin/library/deferred","mvc/visualization/visualization-model"],function(e,t){return Backbone.Model.extend({defaults:{id:null,title:"",type:"",date:null,state:"",state_info:"",modified:!1,dataset_id:"",dataset_id_job:""},initialize:function(n){this.groups=new e,this.settings=new Backbone.Model,this.deferred=new t},reset:function(){this.clear({silent:!0}).set(this.defaults),this.groups.reset(),this.settings.clear(),this.trigger("reset",this)},copy:function(e){var t=this;t.clear({silent:!0}).set(this.defaults),t.set(e.attributes),t.settings=e.settings.clone(),t.groups.reset(),e.groups.each(function(e){t.groups.add(e.clone())}),t.trigger("change",t)},state:function(e,t){this.set("state",e),this.set("state_info",t),this.trigger("set:state"),console.debug("Chart:state() - "+t+" ("+e+")")}})}),define("plugin/library/storage",["utils/utils","plugin/models/chart","plugin/models/group"],function(e,t,n){return Backbone.Model.extend({vis:null,initialize:function(e){this.app=e,this.chart=this.app.chart,this.options=this.app.options,this.id=this.options.id,this.vis=new Visualization({type:"charts",config:{dataset_id:this.options.config.dataset_id,chart_dict:{}}}),this.id&&(this.vis.id=this.id);var t=this.options.config.chart_dict;t&&(this.vis.get("config").chart_dict=t)},save:function(){var e=this.app.chart;this.vis.get("config").chart_dict={};var t=e.get("title");t!=""&&this.vis.set("title",t);var n={attributes:e.attributes,settings:e.settings.attributes,groups:[]};e.groups.each(function(e){n.groups.push(e.attributes)}),this.vis.get("config").chart_dict=n;var r=this;this.vis.save().fail(function(e,t,n){console.error(e,t,n)}).then(function(e){e&&e.id&&(r.id=e.id)})},load:function(){var e=this.vis.get("config").chart_dict;if(!e.attributes)return!1;var t=e.attributes.type;if(!t)return console.debug("Storage::load() - Chart type not provided. Invalid format."),!1;var r=this.app.types.get(t);if(!r)return console.debug("Storage::load() - Chart type not supported. Please re-configure the chart. Resetting chart."),!1;console.debug("Storage::load() - Loading chart type "+t+"."),this.chart.definition=r,this.chart.set(e.attributes),this.chart.state("ok","Loading saved visualization..."),this.chart.settings.set(e.settings);for(var i in e.groups)this.chart.groups.add(new n(e.groups[i]));return this.chart.set("modified",!1),!0}})}),define("plugin/views/viewport",["mvc/ui/ui-portlet","plugin/library/ui","utils/utils"],function(e,t,n){return Backbone.View.extend({container_list:[],canvas_list:[],initialize:function(e,t){this.app=e,this.chart=this.app.chart,this.options=n.merge(t,this.optionsDefault),this.setElement($(this._template())),this._fullscreen(this.$el,100),this._createContainer("div");var r=this;this.chart.on("redraw",function(){r._draw(r.chart)}),this.chart.on("set:state",function(){var e=r.$el.find("#info"),t=r.$el.find(".charts-viewport-container"),n=e.find("#icon");n.removeClass(),e.show(),e.find("#text").html(r.chart.get("state_info"));var i=r.chart.get("state");switch(i){case"ok":e.hide(),t.show();break;case"failed":n.addClass("icon fa fa-warning"),t.hide();break;default:n.addClass("icon fa fa-spinner fa-spin"),t.show()}})},show:function(){this.$el.show()},hide:function(){this.$el.hide()},_fullscreen:function(e,t){e.css("height",$(window).height()-t),$(window).resize(function(){e.css("height",$(window).height()-t)})},_createContainer:function(e,t){t=t||1;for(var n in this.container_list)this.container_list[n].remove();this.container_list=[],this.canvas_list=[];for(var n=0;n<t;n++){var r=$(this._templateContainer(e,parseInt(100/t)));this.$el.append(r),this.container_list[n]=r,this.canvas_list[n]=r.find(".charts-viewport-canvas").attr("id")}},_draw:function(e){var t=this,n=e.deferred.register(),r=e.get("type");this.chart_definition=e.definition;var i=1;e.settings.get("use_panels")==="true"&&(i=e.groups.length),this._createContainer(this.chart_definition.tag,i),e.state("wait","Please wait...");if(!this.chart_definition.execute||this.chart_definition.execute&&e.get("modified"))this.app.jobs.cleanup(e),e.set("modified",!1);var t=this;require(["plugin/charts/"+this.app.chartPath(r)+"/wrapper"],function(r){if(t.chart_definition.execute)t.app.jobs.request(e,t._defaultSettingsString(e),t._defaultRequestString(e),function(){var i=new r(t.app,{process_id:n,chart:e,request_dictionary:t._defaultRequestDictionary(e),canvas_list:t.canvas_list})},function(){e.deferred.done(n)});else var i=new r(t.app,{process_id:n,chart:e,request_dictionary:t._defaultRequestDictionary(e),canvas_list:t.canvas_list})})},_defaultRequestString:function(e){var t="",n=0,r=this;return e.groups.each(function(e){n++;for(var i in r.chart_definition.columns)t+=i+"_"+n+":"+(parseInt(e.get(i))+1)+", "}),t.substring(0,t.length-2)},_defaultSettingsString:function(e){var t="";for(key in e.settings.attributes)t+=key+":"+e.settings.get(key)+", ";return t.substring(0,t.length-2)},_defaultRequestDictionary:function(e){var t={groups:[]};this.chart_definition.execute?t.id=e.get("dataset_id_job"):t.id=e.get("dataset_id");var r=0,i=this;return e.groups.each(function(e){var s={};for(var o in i.chart_definition.columns){var u=i.chart_definition.columns[o];s[o]=n.merge({index:e.get(o)},u)}t.groups.push({key:++r+":"+e.get("key"),columns:s})}),t},_template:function(){return'<div class="charts-viewport"><div id="info" class="info"><span id="icon" class="icon"/><span id="text" class="text" /></div></div>'},_templateContainer:function(e,t){return'<div class="charts-viewport-container" style="width:'+t+'%;">'+'<div id="menu"/>'+"<"+e+' id="'+n.uuid()+'" class="charts-viewport-canvas">'+"</div>"}})}),define("plugin/library/screenshot",["libs/underscore"],function(e){function t(e){e.$el.find("svg").length>0?r(e):n(e)}function n(e){try{var t=e.$el.find(".jqplot-target"),n=t.jqplotToImageStr({});n&&(window.location.href=n.replace("image/png","image/octet-stream"))}catch(r){console.debug("FAILED - Screenshot::_fromCanvas() - "+r),e.error&&e.error("Please reduce your chart to a single panel and try again.")}}function r(e){var t=e.$el,n=e.url,r=e.name,s=new XMLSerializer,o=document.createElement("canvas"),u=$(o),a=t.find("svg").length,f=t.find("svg").first(),l=parseInt(f.css("height")),c=parseInt(f.css("width"));u.attr("width",c*a),u.attr("height",l),(!o.getContext||!o.getContext("2d"))&&alert("Your browser doesn't support this feature, please use a modern browser");var h=o.getContext("2d"),p=0;t.find("svg").each(function(){var e=$(this);e.attr({version:"1.1",xmlns:"http://www.w3.org/2000/svg",width:c,height:l});var t=s.serializeToString(this);h.drawSvg(t,p,0,c,l),p+=c}),window.location.href=i(o,o.getContext("2d"),"white").replace("image/png","image/octet-stream")}function i(e,t,n){var r=e.width,i=e.height,s;if(n){s=t.getImageData(0,0,r,i);var o=t.globalCompositeOperation;t.globalCompositeOperation="destination-over",t.fillStyle=n,t.fillRect(0,0,r,i)}var u=e.toDataURL("image/png");return n&&(t.clearRect(0,0,r,i),t.putImageData(s,0,0),t.globalCompositeOperation=o),u}function s(e){window.location.href="data:none/none;base64,"+btoa(a(e).string)}function o(e){for(var t in document.styleSheets){var n=document.styleSheets[t],r=n.cssRules;if(r)for(var i=0,s=r.length;i<s;i++)try{e.find(r[i].selectorText).each(function(e,t){t.style.cssText+=r[i].style.cssText})}catch(o){}}}function u(e){var t=a(e),n={filename:name||"chart",type:"application/pdf",height:t.height,width:t.width,scale:2,svg:t.string},r=$("body"),i=r.find("#viewport-form");i.length===0&&(i=$("<form>",{id:"viewport-form",method:"post",action:"http://export.highcharts.com/",display:"none"}),r.append(i)),i.empty();for(name in n){var s=$("<input/>",{type:"hidden",name:name,value:n[name]});i.append(s)}try{i.submit()}catch(o){console.log(o)}}function a(e){if(e.$el.find("svg").length==0&&e.error){e.error("No SVG found. This chart type does not support SVG/PDF export.");return}var t=e.$el,n=t.find("svg").length,r=parseInt(t.find("svg").first().css("height")),i=parseInt(t.find("svg").first().css("width")),s=new XMLSerializer,u=$("<svg/>");u.attr({version:"1.1",xmlns:"http://www.w3.org/2000/svg",width:i*n,height:r});var a="",f=0;return t.find("svg").each(function(){var e=$(this).clone();o(e);var t=$('<g transform="translate('+f+', 0)">');t.append(e.find("g").first()),u.append(t),f+=i}),{string:s.serializeToString(u[0]),height:r,width:i}}return{createPNG:t,createSVG:s,createPDF:u}}),define("plugin/views/viewer",["utils/utils","plugin/library/ui","mvc/ui/ui-portlet","plugin/models/group","plugin/views/viewport","plugin/library/screenshot"],function(e,t,n,r,i,s){return Backbone.View.extend({initialize:function(e,r){this.app=e,this.chart=this.app.chart,this.viewport_view=new i(e);var o=this;this.message=new t.Message;var u=new t.ButtonMenu({icon:"fa-camera",title:"Screenshot",tooltip:"Download as PNG, SVG or PDF file"});u.addMenu({id:"button-png",title:"Save as PNG",icon:"fa-file",onclick:function(){o._wait(o.chart,function(){s.createPNG({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}),u.addMenu({id:"button-svg",title:"Save as SVG",icon:"fa-file-text-o",onclick:function(){o._wait(o.chart,function(){s.createSVG({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}),u.addMenu({id:"button-png",title:"Save as PDF",icon:"fa-file-o",onclick:function(){o.app.modal.show({title:"Send chart data for PDF creation",body:"Galaxy does not provide integrated PDF export scripts. You may click 'Continue' to create the PDF by using a 3rd party service (https://export.highcharts.com)",buttons:{Cancel:function(){o.app.modal.hide()},Continue:function(){o.app.modal.hide(),o._wait(o.chart,function(){s.createPDF({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}})}}),this.portlet=new n.View({icon:"fa-bar-chart-o",title:"Viewport",scrollable:!1,operations:{edit_button:new t.ButtonIcon({icon:"fa-edit",tooltip:"Customize this chart",title:"Editor",onclick:function(){o._wait(o.chart,function(){o.app.go("editor")})}}),picture_button_menu:u}}),this.portlet.append(this.message.$el),this.portlet.append(this.viewport_view.$el),this.setElement(this.portlet.$el);var o=this;this.chart.on("change:title",function(){o._refreshTitle()})},show:function(){this.$el.show(),$(window).trigger("resize")},hide:function(){this.$el.hide()},_refreshTitle:function(){var e=this.chart.get("title");this.portlet.title(e)},_wait:function(e,t){e.deferred.ready()?t():this.message.update({message:"Your chart is currently being processed. Please wait and try again."})}})}),define("mvc/ui/ui-tabs",["utils/utils"],function(e){var t=Backbone.View.extend({optionsDefault:{title_new:"",operations:null,onnew:null},initialize:function(t){this.visible=!1,this.$nav=null,this.$content=null,this.first_tab=null,this.options=e.merge(t,this.optionsDefault);var n=$(this._template(this.options));this.$nav=n.find(".tab-navigation"),this.$content=n.find(".tab-content"),this.setElement(n),this.list={};var r=this;this.options.operations&&$.each(this.options.operations,function(e,t){t.$el.prop("id",e),r.$nav.find(".operations").append(t.$el)});if(this.options.onnew){var i=$(this._template_tab_new(this.options));this.$nav.append(i),i.tooltip({title:"Add a new tab",placement:"bottom",container:r.$el}),i.on("click",function(e){i.tooltip("hide"),r.options.onnew()})}},add:function(e){var t=this,n=e.id,r=$(this._template_tab(e)),i=$(this._template_tab_content(e));this.list[n]=e.ondel?!0:!1,this.options.onnew?this.$nav.find("#new-tab").before(r):this.$nav.append(r),i.append(e.$el),this.$content.append(i),_.size(this.list)==1&&(r.addClass("active"),i.addClass("active"),this.first_tab=n);if(e.ondel){var s=r.find("#delete");s.tooltip({title:"Delete this tab",placement:"bottom",container:t.$el}),s.on("click",function(){return s.tooltip("destroy"),t.$el.find(".tooltip").remove(),e.ondel(),!1})}r.on("click",function(r){r.preventDefault(),e.onclick?e.onclick():t.show(n)})},del:function(e){this.$el.find("#tab-"+e).remove(),this.$el.find("#tab-content-"+e).remove(),this.first_tab==e&&(this.first_tab=null),this.first_tab!=null&&this.show(this.first_tab)},delRemovable:function(){for(var e in this.list)this.list[e]&&this.del(e)},show:function(e){this.$el.fadeIn("fast"),this.visible=!0,e&&(this.$el.find(".tab-element").removeClass("active"),this.$el.find(".tab-pane").removeClass("active"),this.$el.find("#tab-"+e).addClass("active"),this.$el.find("#tab-content-"+e).addClass("active"))},hide:function(){this.$el.fadeOut("fast"),this.visible=!1},hideOperation:function(e){this.$nav.find("#"+e).hide()},showOperation:function(e){this.$nav.find("#"+e).show()},setOperation:function(e,t){var n=this.$nav.find("#"+e);n.off("click"),n.on("click",t)},title:function(e,t){var n=this.$el.find("#tab-title-text-"+e);return t&&n.html(t),n.html()},_template:function(e){return'<div class="ui-tabs tabbable tabs-left"><ul id="tab-navigation" class="tab-navigation nav nav-tabs"><div class="operations" style="float: right; margin-bottom: 4px;"></div></ul><div id="tab-content" class="tab-content"/></div>'},_template_tab_new:function(e){return'<li id="new-tab"><a href="javascript:void(0);"><i class="ui-tabs-add fa fa-plus-circle"/>'+e.title_new+"</a>"+"</li>"},_template_tab:function(e){var t='<li id="tab-'+e.id+'" class="tab-element">'+'<a id="tab-title-link-'+e.id+'" title="" href="#tab-content-'+e.id+'" data-original-title="">'+'<span id="tab-title-text-'+e.id+'">'+e.title+"</span>";return e.ondel&&(t+='<i id="delete" class="ui-tabs-delete fa fa-minus-circle"/>'),t+="</a></li>",t},_template_tab_content:function(e){return'<div id="tab-content-'+e.id+'" class="tab-pane"/>'}});return{View:t}}),define("plugin/library/ui-table",["utils/utils"],function(e){var t=Backbone.View.extend({row:null,row_count:0,optionsDefault:{content:"No content available.",onchange:null,ondblclick:null,onconfirm:null,cls:""},events:{click:"_onclick",dblclick:"_ondblclick"},initialize:function(t){this.options=e.merge(t,this.optionsDefault);var n=$(this._template(t));this.$thead=n.find("thead"),this.$tbody=n.find("tbody"),this.$tmessage=n.find("tmessage"),this.setElement(n),this.row=$("<tr></tr>")},addHeader:function(e){var t=$("<th></th>");t.append(e),this.row.append(t)},appendHeader:function(){this.$thead.append(this.row),this.row=$("<tr></tr>")},add:function(e,t,n){var r=$("<td></td>");t&&r.css("width",t),n&&r.css("text-align",n),r.append(e),this.row.append(r)},append:function(e){this._commit(e)},prepend:function(e){this._commit(e,!0)},get:function(e){return this.$el.find("#"+e)},del:function(e){var t=this.$tbody.find("#"+e);t.length>0&&(t.remove(),this.row_count--,this._refresh())},delAll:function(){this.$tbody.empty(),this.row_count=0,this._refresh()},value:function(e){this.before=this.$tbody.find(".current").attr("id"),e!==undefined&&(this.$tbody.find("tr").removeClass("current"),e&&this.$tbody.find("#"+e).addClass("current"));var t=this.$tbody.find(".current").attr("id");return t===undefined?null:(t!=this.before&&this.options.onchange&&this.options.onchange(e),t)},size:function(){return this.$tbody.find("tr").length},_commit:function(e,t){this.del(e),this.row.attr("id",e),t?this.$tbody.prepend(this.row):this.$tbody.append(this.row),this.row=$("<tr></tr>"),this.row_count++,this._refresh()},_onclick:function(e){var t=this.value(),n=$(e.target).closest("tr").attr("id");n!=""&&n&&t!=n&&(this.options.onconfirm?this.options.onconfirm(n):this.value(n))},_ondblclick:function(e){var t=this.value();t&&this.options.ondblclick&&this.options.ondblclick(t)},_refresh:function(){this.row_count==0?this.$tmessage.show():this.$tmessage.hide()},_template:function(e){return'<div><table class="ui-table '+e.cls+'">'+"<thead></thead>"+'<tbody style="cursor: pointer;"></tbody>'+"</table>"+"<tmessage>"+e.content+"</tmessage>"+"<div>"}});return{View:t}}),define("plugin/views/group",["plugin/library/ui-table","plugin/library/ui","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(r,i){this.app=r;var s=this;this.chart=this.app.chart,this.group=i.group,this.group_key=new t.Input({placeholder:"Data label",onchange:function(e){s.group.set("key",e)}}),this.table=new e.View({content:"No data column."});var o=$("<div/>");o.append(n.wrap((new t.Label({title:"Provide a label:"})).$el)),o.append(n.wrap(this.group_key.$el)),o.append(n.wrap((new t.Label({title:"Select columns:"})).$el)),o.append(n.wrap(this.table.$el)),this.setElement(o);var s=this;this.chart.on("change:dataset_id",function(){s._refreshTable()}),this.chart.on("change:type",function(){s._refreshTable()}),this.group.on("change:key",function(){s._refreshGroupKey()}),this.group.on("change",function(){s._refreshGroup()}),this._refreshTable(),this._refreshGroupKey(),this._refreshGroup()},_refreshTable:function(){var e=this.chart.get("dataset_id"),n=this.chart.get("type");if(!e||!n)return;var r=this,i=this.chart.definition;this.table.delAll();var s={};for(var o in i.columns){var u=i.columns[o];if(!u){console.debug("Group::_refreshTable() - Skipping column definition.");continue}var a=new t.Select.View({id:"select_"+o,wait:!0}),f=u.title;u.is_unique&&(f+=" (all data labels)"),this.table.add(f,"25%"),this.table.add(a.$el),this.table.append(o),s[o]=a}this.chart.state("wait","Loading metadata...");var l=this.chart.deferred.register(),c={id:e,success:function(e){for(var t in s)r._addRow(t,e,s,i.columns[t]);r.chart.state("ok","Metadata initialized..."),r.chart.deferred.done(l)}};this.app.datasets.request(c)},_addRow:function(e,t,n,r){var i=this,s=r.is_label,o=r.is_auto,u=r.is_numeric,a=r.is_unique,f=r.is_zero,l=[],c=n[e];o&&l.push({label:"Column: Row Number",value:"auto"}),f&&l.push({label:"Column: None",value:"zero"});var h=t.metadata_column_types;for(var p in h){var d=!1;h[p]=="int"||h[p]=="float"?d=u:d=s,d&&l.push({label:"Column: "+(parseInt(p)+1)+" ["+h[p]+"]",value:p})}c.update(l),a&&this.chart.groups.first()&&this.group.set(e,this.chart.groups.first().get(e));if(!c.exists(this.group.get(e))){var v=c.first();console.debug('Group()::_addRow() - Switching model value from "'+this.group.get(e)+'" to "'+v+'".'),this.group.set(e,v)}c.value(this.group.get(e)),this.group.off("change:"+e),this.group.on("change:"+e,function(){c.value(i.group.get(e))}),c.setOnChange(function(t){a?i.chart.groups.each(function(n){n.set(e,t)}):i.group.set(e,t),i.chart.set("modified",!0)}),c.show()},_refreshGroup:function(){this.group.set("date",n.time())},_refreshGroupKey:function(){var e=this.group.get("key");e===undefined&&(e=""),this.group_key.value(e)}})}),define("plugin/library/ui-table-form",["plugin/library/ui-table","plugin/library/ui","utils/utils"],function(e,t,n){var r=Backbone.View.extend({optionsDefault:{title:"",content:"",mode:""},list:[],initialize:function(r,i){this.app=r,this.options=n.merge(i,this.optionsDefault),this.table_title=new t.Label({title:this.options.title}),this.table=new e.View({content:this.options.content});var s=$('<div class="ui-table-form"/>');this.options.title&&s.append(n.wrap(this.table_title.$el)),s.append(n.wrap(this.table.$el)),this.setElement(s)},title:function(e){this.table_title.title(e)},update:function(e,t){this.table.delAll(),this.list=[];for(var n in e)this._add(e[n].id||n,e[n],t);for(var n in this.list)this.list[n].trigger("change")},_add:function(e,n,r){var i=this,s=null,o=n.type;switch(o){case"text":s=new t.Input({id:"field-"+e,placeholder:n.placeholder,value:r.get(e),onchange:function(t){r.set(e,t)}});break;case"radiobutton":s=new t.RadioButton({id:"field-"+e,data:n.data,value:r.get(e),onchange:function(t){r.set(e,t);var s=_.findWhere(n.data,{value:t});if(s&&s.operations){var o=s.operations;for(var u in o.show){var a=o.show[u];i.table.get(a).show()}for(var u in o.hide){var a=o.hide[u];i.table.get(a).hide()}}}});break;case"select":s=new t.Select.View({id:"field-"+e,data:n.data,value:r.get(e),onchange:function(t){r.set(e,t);var s=_.findWhere(n.data,{value:t});if(s&&s.operations){var o=s.operations;for(var u in o.show){var a=o.show[u];i.table.get(a).show()}for(var u in o.hide){var a=o.hide[u];i.table.get(a).hide()}}}});break;case"dataset":s=new t.Select.View({id:"field-"+e,onchange:function(t){r.set(e,t)}}),i.app.datasets.on("all",function(){var t=[];i.app.datasets.each(function(e){e.get("datatype_id")==n.data&&t.push({value:e.get("id"),label:e.get("name")})}),s.update(t),r.get(e)||r.set(e,s.first()),s.value(r.get(e))}),i.app.datasets.trigger("all.datasets");break;case"textarea":s=new t.Textarea({id:"field-"+e,onchange:function(){r.set(e,s.value())}});break;case"separator":s=$("<div/>");break;default:s=new t.Input({id:"field-"+e,placeholder:n.placeholder,type:n.type,onchange:function(){r.set(e,s.value())}})}if(o!="separator"){r.get(e)||r.set(e,n.init),s.value(r.get(e)),this.list[e]=s;var u=$("<div/>");u.append(s.$el),n.info&&u.append('<div class="ui-table-form-info">'+n.info+"</div>"),this.options.style=="bold"?(this.table.add((new t.Label({title:n.title,cls:"form-label"})).$el),this.table.add(u)):(this.table.add('<span class="ui-table-form-title">'+n.title+"</span>","25%"),this.table.add(u))}else this.table.add('<div class="ui-table-form-separator">'+n.title+":<div/>"),this.table.add($("<div/>"));this.table.append(e),n.hide&&this.table.get(e).hide()}});return{View:r}}),define("plugin/views/settings",["plugin/library/ui","plugin/library/ui-table-form","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(e,n){this.app=e;var r=this;this.chart=this.app.chart,this.form=new t.View(e,{content:"This chart type does not provide any options."}),this.setElement(this.form.$el);var r=this;this.chart.on("change",function(){r._refresh()})},_refresh:function(){var e=this.chart.definition;if(!e)return;this.form.title(e.category+" - "+e.title+":"),this.form.update(e.settings,this.chart.settings)}})}),define("plugin/views/types",["utils/utils","plugin/library/ui"],function(e,t){return Backbone.View.extend({optionsDefault:{onchange:null,ondblclick:null},events:{click:"_onclick",dblclick:"_ondblclick"},initialize:function(n,r){var i=this;this.app=n,this.options=e.merge(r,this.optionsDefault);var s=$('<div class="charts-grid"/>');s.append(e.wrap((new t.Label({title:"How many data points would you like to analyze?"})).$el)),this.library=new t.RadioButton({data:[{label:"Few (<500)",value:"small"},{label:"Some (<10k)",value:"medium"},{label:"Many (>10k)",value:"large"}],onchange:function(e){i._filter(e)}}),s.append(e.wrap(this.library.$el)),this.setElement(s),this._render(),this.library.value("small")},value:function(e){var t=this.$el.find(".current").attr("id");e!==undefined&&(this.$el.find(".current").removeClass("current"),this.$el.find("#"+e).addClass("current"));var n=this.$el.find(".current").attr("id");return n===undefined?null:(n!=t&&this.options.onchange&&this.options.onchange(e),n)},_filter:function(e){this.$el.find(".header").hide();var t=this.app.types.attributes;for(var n in t){var r=t[n],i=this.$el.find("#"+n),s=this.$el.find("#types-header-"+this.categories_index[r.category]),o=r.keywords||"";o.indexOf(e)>=0?(i.show(),s.show()):i.hide()}},_render:function(){this.categories={},this.categories_index={};var t=0,n=this.app.types.attributes;for(var r in n){var i=n[r],s=i.category;this.categories[s]||(this.categories[s]={},this.categories_index[s]=t++),this.categories[s][r]=i}for(var s in this.categories){var o=$('<div style="clear: both;"/>');o.append(e.wrap(this._template_header({id:"types-header-"+this.categories_index[s],title:s})));for(var r in this.categories[s]){var i=this.categories[s][r],u=i.title+" ("+i.library+")";i.zoomable&&(u='<span class="fa fa-search-plus"/>'+u),o.append(e.wrap(this._template_item({id:r,title:u,url:config.app_root+"charts/"+this.app.chartPath(r)+"/logo.png"})))}this.$el.append(e.wrap(o))}},_onclick:function(e){var t=this.value(),n=$(e.target).closest(".item").attr("id");n!=""&&n&&t!=n&&this.value(n)},_ondblclick:function(e){var t=this.value();t&&this.options.ondblclick&&this.options.ondblclick(t)},_template_header:function(e){return'<div id="'+e.id+'" class="header">'+"• "+e.title+"<div>"},_template_item:function(e){return'<div id="'+e.id+'" class="item">'+'<img class="image" src="'+e.url+'">'+'<div class="title">'+e.title+"</div>"+"<div>"}})}),define("plugin/views/editor",["mvc/ui/ui-tabs","plugin/library/ui","mvc/ui/ui-portlet","utils/utils","plugin/models/chart","plugin/models/group","plugin/views/group","plugin/views/settings","plugin/views/types"],function(e,t,n,r,i,s,o,u,a){return Backbone.View.extend({optionsDefault:{header:!0,content:"No content available."},initialize:function(i,s){var o=this;this.app=i,this.chart=this.app.chart,this.options=r.merge(s,this.optionsDefault),this.message=new t.Message,this.portlet=new n.View({icon:"fa-bar-chart-o",title:"Editor",operations:{save:new t.ButtonIcon({icon:"fa-save",tooltip:"Draw Chart",title:"Draw",onclick:function(){o._saveChart()}}),back:new t.ButtonIcon({icon:"fa-caret-left",tooltip:"Return to Viewer",title:"Cancel",onclick:function(){o.app.go("viewer"),o.app.storage.load()}})}}),this.types=new a(i,{onchange:function(e){var t=o.app.types.get(e);t||console.debug("FAILED - Editor::onchange() - Chart type not supported."),o.chart.definition=t,o.chart.settings.clear(),o.chart.set({type:e}),o.chart.set("modified",!0),console.debug("Editor::onchange() - Switched chart type.")},ondblclick:function(e){o._saveChart()}}),this.tabs=new e.View({title_new:"Add Data",onnew:function(){var e=o._addGroupModel();o.tabs.show(e.id)}}),this.title=new t.Input({placeholder:"Chart title",onchange:function(){o.chart.set("title",o.title.value())}});var f=$("<div/>");f.append(r.wrap((new t.Label({title:"Provide a chart title:"})).$el)),f.append(r.wrap(this.title.$el)),f.append(r.wrap(this.types.$el)),this.tabs.add({id:"main",title:"Start",$el:f}),this.settings=new u(this.app),this.tabs.add({id:"settings",title:"Configuration",$el:this.settings.$el}),this.portlet.append(this.message.$el),this.portlet.append(this.tabs.$el),this.setElement(this.portlet.$el),this.tabs.hideOperation("back");var o=this;this.chart.on("change:title",function(e){o._refreshTitle()}),this.chart.on("change:type",function(e){o.types.value(e.get("type"))}),this.chart.on("reset",function(e){o._resetChart()}),this.app.chart.on("redraw",function(e){o.portlet.showOperation("back")}),this.app.chart.groups.on("add",function(e){o._addGroup(e)}),this.app.chart.groups.on("remove",function(e){o._removeGroup(e)}),this.app.chart.groups.on("reset",function(e){o._removeAllGroups()}),this.app.chart.groups.on("change:key",function(e){o._refreshGroupKey()}),this._resetChart()},show:function(){this.$el.show()},hide:function(){this.$el.hide()},_refreshTitle:function(){var e=this.chart.get("title");this.portlet.title(e),this.title.value(e)},_refreshGroupKey:function(){var e=this,t=0;this.chart.groups.each(function(n){var r=n.get("key","");r==""&&(r="Data label"),e.tabs.title(n.id,++t+": "+r)})},_addGroupModel:function(){var e=new s({id:r.uuid()});return this.chart.groups.add(e),e},_addGroup:function(e){var t=this,n=new o(this.app,{group:e});this.tabs.add({id:e.id,$el:n.$el,ondel:function(){t.chart.groups.remove(e.id)}}),this._refreshGroupKey(),this.chart.set("modified",!0)},_removeGroup:function(e){this.tabs.del(e.id),this._refreshGroupKey(),this.chart.set("modified",!0)},_removeAllGroups:function(e){this.tabs.delRemovable()},_resetChart:function(){this.chart.set("id",r.uuid()),this.chart.set("type","nvd3_bar"),this.chart.set("dataset_id",this.app.options.config.dataset_id),this.chart.set("title","New Chart"),this.portlet.hideOperation("back")},_saveChart:function(){this.chart.set({type:this.types.value(),title:this.title.value(),date:r.time()});if(this.chart.groups.length==0){this.message.update({message:"Please select data columns before drawing the chart."});var e=this._addGroupModel();this.tabs.show(e.id);return}var t=this,n=!0,i=this.chart.definition;this.chart.groups.each(function(e){if(!n)return;for(var r in i.columns)if(e.attributes[r]=="null"){t.message.update({status:"danger",message:"This chart type requires column types not found in your tabular file."}),t.tabs.show(e.id),n=!1;return}});if(!n)return;this.app.go("viewer");var t=this;this.chart.deferred.execute(function(){t.app.storage.save(),t.chart.trigger("redraw")})}})}),define("plugin/models/config",[],function(){return Backbone.Model.extend({defaults:{query_limit:500,query_timeout:100}})}),define("plugin/charts/forms/default",[],function(){return{title:"",category:"",library:"",tag:"",keywords:"",query_limit:0,settings:{separator_x:{title:"X axis",type:"separator"},x_axis_label:{title:"Axis label",info:"Provide a label for the axis.",type:"text",init:"X-axis",placeholder:"Axis label"},x_axis_type:{title:"Axis value type",info:"Select the value type of the axis.",type:"select",init:"auto",data:[{label:"-- Do not show values --",value:"hide",operations:{hide:["x_axis_precision"]}},{label:"Auto",value:"auto",operations:{hide:["x_axis_precision"]}},{label:"Float",value:"f",operations:{show:["x_axis_precision"]}},{label:"Exponent",value:"e",operations:{show:["x_axis_precision"]}},{label:"Integer",value:"d",operations:{hide:["x_axis_precision"]}},{label:"Percentage",value:"p",operations:{show:["x_axis_precision"]}},{label:"SI-prefix",value:"s",operations:{hide:["x_axis_precision"]}}]},x_axis_precision:{title:"Axis tick format",info:"Select the tick format for the axis.",type:"select",init:"1",data:[{label:"0.00001",value:"5"},{label:"0.0001",value:"4"},{label:"0.001",value:"3"},{label:"0.01",value:"2"},{label:"0.1",value:"1"},{label:"1",value:"0"}]},separator_y:{title:"Y axis",type:"separator"},y_axis_label:{title:"Axis label",info:"Provide a label for the axis.",type:"text",init:"Y-axis",placeholder:"Axis label"},y_axis_type:{title:"Axis value type",info:"Select the value type of the axis.",type:"select",init:"auto",data:[{label:"-- Do not show values --",value:"hide",operations:{hide:["y_axis_precision"]}},{label:"Auto",value:"auto",operations:{hide:["y_axis_precision"]}},{label:"Float",value:"f",operations:{show:["y_axis_precision"]}},{label:"Exponent",value:"e",operations:{show:["y_axis_precision"]}},{label:"Integer",value:"d",operations:{hide:["y_axis_precision"]}},{label:"Percentage",value:"p",operations:{show:["y_axis_precision"]}},{label:"SI-prefix",value:"s",operations:{hide:["y_axis_precision"]}}]},y_axis_precision:{title:"Axis tick format",info:"Select the tick format for the axis.",type:"select",init:"1",data:[{label:"0.00001",value:"5"},{label:"0.0001",value:"4"},{label:"0.001",value:"3"},{label:"0.01",value:"2"},{label:"0.1",value:"1"},{label:"1",value:"0"}]},separator_legend:{title:"Others",type:"separator"},show_legend:{title:"Show legend",info:"Would you like to add a legend?",type:"radiobutton",init:"true",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]},use_panels:{title:"Use multi-panels",info:"Would you like to separate your data into individual panels?",type:"radiobutton",init:"false",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]}}}}),function(){function t(e,t){return(new Date(t,e+1,0)).getDate()}function n(e,t,n){return function(r,i,s){var o=e(r),u=[];o<r&&t(o);if(s>1)while(o<i){var a=new Date(+o);n(a)%s===0&&u.push(a),t(o)}else while(o<i)u.push(new Date(+o)),t(o);return u}}var e=window.nv||{};e.version="1.1.15b",e.dev=!0,window.nv=e,e.tooltip=e.tooltip||{},e.utils=e.utils||{},e.models=e.models||{},e.charts={},e.graphs=[],e.logs={},e.dispatch=d3.dispatch("render_start","render_end"),e.dev&&(e.dispatch.on("render_start",function(t){e.logs.startTime=+(new Date)}),e.dispatch.on("render_end",function(t){e.logs.endTime=+(new Date),e.logs.totalTime=e.logs.endTime-e.logs.startTime,e.log("total",e.logs.totalTime)})),e.log=function(){if(e.dev&&console.log&&console.log.apply)console.log.apply(console,arguments);else if(e.dev&&typeof console.log=="function"&&Function.prototype.bind){var t=Function.prototype.bind.call(console.log,console);t.apply(console,arguments)}return arguments[arguments.length-1]},e.render=function(n){n=n||1,e.render.active=!0,e.dispatch.render_start(),setTimeout(function(){var t,r;for(var i=0;i<n&&(r=e.render.queue[i]);i++)t=r.generate(),typeof r.callback==typeof Function&&r.callback(t),e.graphs.push(t);e.render.queue.splice(0,i),e.render.queue.length?setTimeout(arguments.callee,0):(e.dispatch.render_end(),e.render.active=!1)},0)},e.render.active=!1,e.render.queue=[],e.addGraph=function(t){typeof arguments[0]==typeof Function&&(t={generate:arguments[0],callback:arguments[1]}),e.render.queue.push(t),e.render.active||e.render()},e.identity=function(e){return e},e.strip=function(e){return e.replace(/(\s|&)/g,"")},d3.time.monthEnd=function(e){return new Date(e.getFullYear(),e.getMonth(),0)},d3.time.monthEnds=n(d3.time.monthEnd,function(e){e.setUTCDate(e.getUTCDate()+1),e.setDate(t(e.getMonth()+1,e.getFullYear()))},function(e){return e.getMonth()}),e.interactiveGuideline=function(){function c(o){o.each(function(o){function g(){var e=d3.mouse(this),n=e[0],r=e[1],o=!0,a=!1;l&&(n=d3.event.offsetX,r=d3.event.offsetY,d3.event.target.tagName!=="svg"&&(o=!1),d3.event.target.className.baseVal.match("nv-legend")&&(a=!0)),o&&(n-=i.left,r-=i.top);if(n<0||r<0||n>p||r>d||d3.event.relatedTarget&&d3.event.relatedTarget.ownerSVGElement===undefined||a){if(l&&d3.event.relatedTarget&&d3.event.relatedTarget.ownerSVGElement===undefined&&d3.event.relatedTarget.className.match(t.nvPointerEventsClass))return;u.elementMouseout({mouseX:n,mouseY:r}),c.renderGuideLine(null);return}var f=s.invert(n);u.elementMousemove({mouseX:n,mouseY:r,pointXValue:f}),d3.event.type==="dblclick"&&u.elementDblclick({mouseX:n,mouseY:r,pointXValue:f})}var h=d3.select(this),p=n||960,d=r||400,v=h.selectAll("g.nv-wrap.nv-interactiveLineLayer").data([o]),m=v.enter().append("g").attr("class"," nv-wrap nv-interactiveLineLayer");m.append("g").attr("class","nv-interactiveGuideLine");if(!f)return;f.on("mousemove",g,!0).on("mouseout",g,!0).on("dblclick",g),c.renderGuideLine=function(t){if(!a)return;var n=v.select(".nv-interactiveGuideLine").selectAll("line").data(t!=null?[e.utils.NaNtoZero(t)]:[],String);n.enter().append("line").attr("class","nv-guideline").attr("x1",function(e){return e}).attr("x2",function(e){return e}).attr("y1",d).attr("y2",0),n.exit().remove()}})}var t=e.models.tooltip(),n=null,r=null,i={left:0,top:0},s=d3.scale.linear(),o=d3.scale.linear(),u=d3.dispatch("elementMousemove","elementMouseout","elementDblclick"),a=!0,f=null,l=navigator.userAgent.indexOf("MSIE")!==-1;return c.dispatch=u,c.tooltip=t,c.margin=function(e){return arguments.length?(i.top=typeof e.top!="undefined"?e.top:i.top,i.left=typeof e.left!="undefined"?e.left:i.left,c):i},c.width=function(e){return arguments.length?(n=e,c):n},c.height=function(e){return arguments.length?(r=e,c):r},c.xScale=function(e){return arguments.length?(s=e,c):s},c.showGuideLine=function(e){return arguments.length?(a=e,c):a},c.svgContainer=function(e){return arguments.length?(f=e,c):f},c},e.interactiveBisect=function(e,t,n){if(!e instanceof Array)return null;typeof n!="function"&&(n=function(e,t){return e.x});var r=d3.bisector(n).left,i=d3.max([0,r(e,t)-1]),s=n(e[i],i);typeof s=="undefined"&&(s=i);if(s===t)return i;var o=d3.min([i+1,e.length-1]),u=n(e[o],o);return typeof u=="undefined"&&(u=o),Math.abs(u-t)>=Math.abs(s-t)?i:o},e.nearestValueIndex=function(e,t,n){var r=Infinity,i=null;return e.forEach(function(e,s){var o=Math.abs(t-e);o<=r&&o<n&&(r=o,i=s)}),i},function(){window.nv.tooltip={},window.nv.models.tooltip=function(){function y(){if(a){var e=d3.select(a);e.node().tagName!=="svg"&&(e=e.select("svg"));var t=e.node()?e.attr("viewBox"):null;if(t){t=t.split(" ");var n=parseInt(e.style("width"))/t[2];l.left=l.left*n,l.top=l.top*n}}}function b(e){var t;a?t=d3.select(a):t=d3.select("body");var n=t.select(".nvtooltip");return n.node()===null&&(n=t.append("div").attr("class","nvtooltip "+(u?u:"xy-tooltip")).attr("id",h)),n.node().innerHTML=e,n.style("top",0).style("left",0).style("opacity",0),n.selectAll("div, table, td, tr").classed(p,!0),n.classed(p,!0),n.node()}function w(){if(!c)return;if(!g(n))return;y();var t=l.left,u=o!=null?o:l.top,h=b(m(n));f=h;if(a){var p=a.getElementsByTagName("svg")[0],d=p?p.getBoundingClientRect():a.getBoundingClientRect(),v={left:0,top:0};if(p){var E=p.getBoundingClientRect(),S=a.getBoundingClientRect(),x=E.top;if(x<0){var T=a.getBoundingClientRect();x=Math.abs(x)>T.height?0:x}v.top=Math.abs(x-S.top),v.left=Math.abs(E.left-S.left)}t+=a.offsetLeft+v.left-2*a.scrollLeft,u+=a.offsetTop+v.top-2*a.scrollTop}return s&&s>0&&(u=Math.floor(u/s)*s),e.tooltip.calcTooltipPosition([t,u],r,i,h),w}var t=null,n=null,r="w",i=50,s=25,o=null,u=null,a=null,f=null,l={left:null,top:null},c=!0,h="nvtooltip-"+Math.floor(Math.random()*1e5),p="nv-pointer-events-none",d=function(e,t){return e},v=function(e){return e},m=function(e){if(t!=null)return t;if(e==null)return"";var n=d3.select(document.createElement("table")),r=n.selectAll("thead").data([e]).enter().append("thead");r.append("tr").append("td").attr("colspan",3).append("strong").classed("x-value",!0).html(v(e.value));var i=n.selectAll("tbody").data([e]).enter().append("tbody"),s=i.selectAll("tr").data(function(e){return e.series}).enter().append("tr").classed("highlight",function(e){return e.highlight});s.append("td").classed("legend-color-guide",!0).append("div").style("background-color",function(e){return e.color}),s.append("td").classed("key",!0).html(function(e){return e.key}),s.append("td").classed("value",!0).html(function(e,t){return d(e.value,t)}),s.selectAll("td").each(function(e){if(e.highlight){var t=d3.scale.linear().domain([0,1]).range(["#fff",e.color]),n=.6;d3.select(this).style("border-bottom-color",t(n)).style("border-top-color",t(n))}});var o=n.node().outerHTML;return e.footer!==undefined&&(o+="<div class='footer'>"+e.footer+"</div>"),o},g=function(e){return e&&e.series&&e.series.length>0?!0:!1};return w.nvPointerEventsClass=p,w.content=function(e){return arguments.length?(t=e,w):t},w.tooltipElem=function(){return f},w.contentGenerator=function(e){return arguments.length?(typeof e=="function"&&(m=e),w):m},w.data=function(e){return arguments.length?(n=e,w):n},w.gravity=function(e){return arguments.length?(r=e,w):r},w.distance=function(e){return arguments.length?(i=e,w):i},w.snapDistance=function(e){return arguments.length?(s=e,w):s},w.classes=function(e){return arguments.length?(u=e,w):u},w.chartContainer=function(e){return arguments.length?(a=e,w):a},w.position=function(e){return arguments.length?(l.left=typeof e.left!="undefined"?e.left:l.left,l.top=typeof e.top!="undefined"?e.top:l.top,w):l},w.fixedTop=function(e){return arguments.length?(o=e,w):o},w.enabled=function(e){return arguments.length?(c=e,w):c},w.valueFormatter=function(e){return arguments.length?(typeof e=="function"&&(d=e),w):d},w.headerFormatter=function(e){return arguments.length?(typeof e=="function"&&(v=e),w):v},w.id=function(){return h},w},e.tooltip.show=function(t,n,r,i,s,o){var u=document.createElement("div");u.className="nvtooltip "+(o?o:"xy-tooltip");var a=s;if(!s||s.tagName.match(/g|svg/i))a=document.getElementsByTagName("body")[0];u.style.left=0,u.style.top=0,u.style.opacity=0,u.innerHTML=n,a.appendChild(u),s&&(t[0]=t[0]-s.scrollLeft,t[1]=t[1]-s.scrollTop),e.tooltip.calcTooltipPosition(t,r,i,u)},e.tooltip.findFirstNonSVGParent=function(e){while(e.tagName.match(/^g|svg$/i)!==null)e=e.parentNode;return e},e.tooltip.findTotalOffsetTop=function(e,t){var n=t;do isNaN(e.offsetTop)||(n+=e.offsetTop);while(e=e.offsetParent);return n},e.tooltip.findTotalOffsetLeft=function(e,t){var n=t;do isNaN(e.offsetLeft)||(n+=e.offsetLeft);while(e=e.offsetParent);return n},e.tooltip.calcTooltipPosition=function(t,n,r,i){var s=parseInt(i.offsetHeight),o=parseInt(i.offsetWidth),u=e.utils.windowSize().width,a=e.utils.windowSize().height,f=window.pageYOffset,l=window.pageXOffset,c,h;a=window.innerWidth>=document.body.scrollWidth?a:a-16,u=window.innerHeight>=document.body.scrollHeight?u:u-16,n=n||"s",r=r||20;var p=function(t){return e.tooltip.findTotalOffsetTop(t,h)},d=function(t){return e.tooltip.findTotalOffsetLeft(t,c)};switch(n){case"e":c=t[0]-o-r,h=t[1]-s/2;var v=d(i),m=p(i);v<l&&(c=t[0]+r>l?t[0]+r:l-v+c),m<f&&(h=f-m+h),m+s>f+a&&(h=f+a-m+h-s);break;case"w":c=t[0]+r,h=t[1]-s/2;var v=d(i),m=p(i);v+o>u&&(c=t[0]-o-r),m<f&&(h=f+5),m+s>f+a&&(h=f+a-m+h-s);break;case"n":c=t[0]-o/2-5,h=t[1]+r;var v=d(i),m=p(i);v<l&&(c=l+5),v+o>u&&(c=c-o/2+5),m+s>f+a&&(h=f+a-m+h-s);break;case"s":c=t[0]-o/2,h=t[1]-s-r;var v=d(i),m=p(i);v<l&&(c=l+5),v+o>u&&(c=c-o/2+5),f>m&&(h=f);break;case"none":c=t[0],h=t[1]-r;var v=d(i),m=p(i)}return i.style.left=c+"px",i.style.top=h+"px",i.style.opacity=1,i.style.position="absolute",i},e.tooltip.cleanup=function(){var e=document.getElementsByClassName("nvtooltip"),t=[];while(e.length)t.push(e[0]),e[0].style.transitionDelay="0 !important",e[0].style.opacity=0,e[0].className="nvtooltip-pending-removal";setTimeout(function(){while(t.length){var e=t.pop();e.parentNode.removeChild(e)}},500)}}(),e.utils.windowSize=function(){var e={width:640,height:480};return document.body&&document.body.offsetWidth&&(e.width=document.body.offsetWidth,e.height=document.body.offsetHeight),document.compatMode=="CSS1Compat"&&document.documentElement&&document.documentElement.offsetWidth&&(e.width=document.documentElement.offsetWidth,e.height=document.documentElement.offsetHeight),window.innerWidth&&window.innerHeight&&(e.width=window.innerWidth,e.height=window.innerHeight),e},e.utils.windowResize=function(e){if(e===undefined)return;var t=window.onresize;window.onresize=function(n){typeof t=="function"&&t(n),e(n)}},e.utils.getColor=function(t){return arguments.length?Object.prototype.toString.call(t)==="[object Array]"?function(e,n){return e.color||t[n%t.length]}:t:e.utils.defaultColor()},e.utils.defaultColor=function(){var e=d3.scale.category20().range();return function(t,n){return t.color||e[n%e.length]}},e.utils.customTheme=function(e,t,n){t=t||function(e){return e.key},n=n||d3.scale.category20().range();var r=n.length;return function(i,s){var o=t(i);return r||(r=n.length),typeof e[o]!="undefined"?typeof e[o]=="function"?e[o]():e[o]:n[--r]}},e.utils.pjax=function(t,n){function r(r){d3.html(r,function(r){var i=d3.select(n).node();i.parentNode.replaceChild(d3.select(r).select(n).node(),i),e.utils.pjax(t,n)})}d3.selectAll(t).on("click",function(){history.pushState(this.href,this.textContent,this.href),r(this.href),d3.event.preventDefault()}),d3.select(window).on("popstate",function(){d3.event.state&&r(d3.event.state)})},e.utils.calcApproxTextWidth=function(e){if(typeof e.style=="function"&&typeof e.text=="function"){var t=parseInt(e.style("font-size").replace("px","")),n=e.text().length;return n*t*.5}return 0},e.utils.NaNtoZero=function(e){return typeof e!="number"||isNaN(e)||e===null||e===Infinity?0:e},e.utils.optionsFunc=function(e){return e&&d3.map(e).forEach(function(e,t){typeof this[e]=="function"&&this[e](t)}.bind(this)),this},e.models.axis=function(){function m(e){return e.each(function(e){var i=d3.select(this),m=i.selectAll("g.nv-wrap.nv-axis").data([e]),g=m.enter().append("g").attr("class","nvd3 nv-wrap nv-axis"),y=g.append("g"),b=m.select("g");p!==null?t.ticks(p):(t.orient()=="top"||t.orient()=="bottom")&&t.ticks(Math.abs(s.range()[1]-s.range()[0])/100),b.call(t),v=v||t.scale();var w=t.tickFormat();w==null&&(w=v.tickFormat());var E=b.selectAll("text.nv-axislabel").data([o||null]);E.exit().remove();switch(t.orient()){case"top":E.enter().append("text").attr("class","nv-axislabel");var S=s.range().length==2?s.range()[1]:s.range()[s.range().length-1]+(s.range()[1]-s.range()[0]);E.attr("text-anchor","middle").attr("y",0).attr("x",S/2);if(u){var x=m.selectAll("g.nv-axisMaxMin").data(s.domain());x.enter().append("g").attr("class","nv-axisMaxMin").append("text"),x.exit().remove(),x.attr("transform",function(e,t){return"translate("+s(e)+",0)"}).select("text").attr("dy","-0.5em").attr("y",-t.tickPadding()).attr("text-anchor","middle").text(function(e,t){var n=w(e);return(""+n).match("NaN")?"":n}),x.attr("transform",function(e,t){return"translate("+s.range()[t]+",0)"})}break;case"bottom":var T=36,N=30,C=b.selectAll("g").select("text");if(f%360){C.each(function(e,t){var n=this.getBBox().width;n>N&&(N=n)});var k=Math.abs(Math.sin(f*Math.PI/180)),T=(k?k*N:N)+30;C.attr("transform",function(e,t,n){return"rotate("+f+" 0,0)"}).style("text-anchor",f%360>0?"start":"end")}E.enter().append("text").attr("class","nv-axislabel");var S=s.range().length==2?s.range()[1]:s.range()[s.range().length-1]+(s.range()[1]-s.range()[0]);E.attr("text-anchor","middle").attr("y",T).attr("x",S/2);if(u){var x=m.selectAll("g.nv-axisMaxMin").data([s.domain()[0],s.domain()[s.domain().length-1]]);x.enter().append("g").attr("class","nv-axisMaxMin").append("text"),x.exit().remove(),x.attr("transform",function(e,t){return"translate("+(s(e)+(h?s.rangeBand()/2:0))+",0)"}).select("text").attr("dy",".71em").attr("y",t.tickPadding()).attr("transform",function(e,t,n){return"rotate("+f+" 0,0)"}).style("text-anchor",f?f%360>0?"start":"end":"middle").text(function(e,t){var n=w(e);return(""+n).match("NaN")?"":n}),x.attr("transform",function(e,t){return"translate("+(s(e)+(h?s.rangeBand()/2:0))+",0)"})}c&&C.attr("transform",function(e,t){return"translate(0,"+(t%2==0?"0":"12")+")"});break;case"right":E.enter().append("text").attr("class","nv-axislabel"),E.style("text-anchor",l?"middle":"begin").attr("transform",l?"rotate(90)":"").attr("y",l?-Math.max(n.right,r)+12:-10).attr("x",l?s.range()[0]/2:t.tickPadding());if(u){var x=m.selectAll("g.nv-axisMaxMin").data(s.domain());x.enter().append("g").attr("class","nv-axisMaxMin").append("text").style("opacity",0),x.exit().remove(),x.attr("transform",function(e,t){return"translate(0,"+s(e)+")"}).select("text").attr("dy",".32em").attr("y",0).attr("x",t.tickPadding()).style("text-anchor","start").text(function(e,t){var n=w(e);return(""+n).match("NaN")?"":n}),x.attr("transform",function(e,t){return"translate(0,"+s.range()[t]+")"}).select("text").style("opacity",1)}break;case"left":E.enter().append("text").attr("class","nv-axislabel"),E.style("text-anchor",l?"middle":"end").attr("transform",l?"rotate(-90)":"").attr("y",l?-Math.max(n.left,r)+d:-10).attr("x",l?-s.range()[0]/2:-t.tickPadding());if(u){var x=m.selectAll("g.nv-axisMaxMin").data(s.domain());x.enter().append("g").attr("class","nv-axisMaxMin").append("text").style("opacity",0),x.exit().remove(),x.attr("transform",function(e,t){return"translate(0,"+v(e)+")"}).select("text").attr("dy",".32em").attr("y",0).attr("x",-t.tickPadding()).attr("text-anchor","end").text(function(e,t){var n=w(e);return(""+n).match("NaN")?"":n}),x.attr("transform",function(e,t){return"translate(0,"+s.range()[t]+")"}).select("text").style("opacity",1)}}E.text(function(e){return e}),u&&(t.orient()==="left"||t.orient()==="right")&&(b.selectAll("g").each(function(e,t){d3.select(this).select("text").attr("opacity",1);if(s(e)<s.range()[1]+10||s(e)>s.range()[0]-10)(e>1e-10||e<-1e-10)&&d3.select(this).attr("opacity",0),d3.select(this).select("text").attr("opacity",0)}),s.domain()[0]==s.domain()[1]&&s.domain()[0]==0&&m.selectAll("g.nv-axisMaxMin").style("opacity",function(e,t){return t?0:1}));if(u&&(t.orient()==="top"||t.orient()==="bottom")){var L=[];m.selectAll("g.nv-axisMaxMin").each(function(e,t){try{t?L.push(s(e)-this.getBBox().width-4):L.push(s(e)+this.getBBox().width+4)}catch(n){t?L.push(s(e)-4):L.push(s(e)+4)}}),b.selectAll("g").each(function(e,t){if(s(e)<L[0]||s(e)>L[1])e>1e-10||e<-1e-10?d3.select(this).remove():d3.select(this).select("text").remove()})}a&&b.selectAll(".tick").filter(function(e){return!parseFloat(Math.round(e.__data__*1e5)/1e6)&&e.__data__!==undefined}).classed("zero",!0),v=s.copy()}),m}var t=d3.svg.axis(),n={top:0,right:0,bottom:0,left:0},r=75,i=60,s=d3.scale.linear(),o=null,u=!0,a=!0,f=0,l=!0,c=!1,h=!1,p=null,d=12;t.scale(s).orient("bottom").tickFormat(function(e){return e});var v;return m.axis=t,d3.rebind(m,t,"orient","tickValues","tickSubdivide","tickSize","tickPadding","tickFormat"),d3.rebind(m,s,"domain","range","rangeBand","rangeBands"),m.options=e.utils.optionsFunc.bind(m),m.margin=function(e){return arguments.length?(n.top=typeof e.top!="undefined"?e.top:n.top,n.right=typeof e.right!="undefined"?e.right:n.right,n.bottom=typeof e.bottom!="undefined"?e.bottom:n.bottom,n.left=typeof e.left!="undefined"?e.left:n.left,m):n},m.width=function(e){return arguments.length?(r=e,m):r},m.ticks=function(e){return arguments.length?(p=e,m):p},m.height=function(e){return arguments.length?(i=e,m):i},m.axisLabel=function(e){return arguments.length?(o=e,m):o},m.showMaxMin=function(e){return arguments.length?(u=e,m):u},m.highlightZero=function(e){return arguments.length?(a=e,m):a},m.scale=function(e){return arguments.length?(s=e,t.scale(s),h=typeof s.rangeBands=="function",d3.rebind(m,s,"domain","range","rangeBand","rangeBands"),m):s},m.rotateYLabel=function(e){return arguments.length?(l=e,m):l},m.rotateLabels=function(e){return arguments.length?(f=e,m):f},m.staggerLabels=function(e){return arguments.length?(c=e,m):c},m.axisLabelDistance=function(e){return arguments.length?(d=e,m):d},m},e.models.historicalBar=function(){function w(E){return E.each(function(w){var E=n-t.left-t.right,S=r-t.top-t.bottom,T=d3.select(this);s.domain(d||d3.extent(w[0].values.map(u).concat(f))),c?s.range(m||[E*.5/w[0].values.length,E*(w[0].values.length-.5)/w[0].values.length]):s.range(m||[0,E]),o.domain(v||d3.extent(w[0].values.map(a).concat(l))).range(g||[S,0]),s.domain()[0]===s.domain()[1]&&(s.domain()[0]?s.domain([s.domain()[0]-s.domain()[0]*.01,s.domain()[1]+s.domain()[1]*.01]):s.domain([-1,1])),o.domain()[0]===o.domain()[1]&&(o.domain()[0]?o.domain([o.domain()[0]+o.domain()[0]*.01,o.domain()[1]-o.domain()[1]*.01]):o.domain([-1,1]));var N=T.selectAll("g.nv-wrap.nv-historicalBar-"+i).data([w[0].values]),C=N.enter().append("g").attr("class","nvd3 nv-wrap nv-historicalBar-"+i),k=C.append("defs"),L=C.append("g"),A=N.select("g");L.append("g").attr("class","nv-bars"),N.attr("transform","translate("+t.left+","+t.top+")"),T.on("click",function(e,t){y.chartClick({data:e,index:t,pos:d3.event,id:i})}),k.append("clipPath").attr("id","nv-chart-clip-path-"+i).append("rect"),N.select("#nv-chart-clip-path-"+i+" rect").attr("width",E).attr("height",S),A.attr("clip-path",h?"url(#nv-chart-clip-path-"+i+")":"");var O=N.select(".nv-bars").selectAll(".nv-bar").data(function(e){return e},function(e,t){return u(e,t)});O.exit().remove();var M=O.enter().append("rect").attr("x",0).attr("y",function(t,n){return e.utils.NaNtoZero(o(Math.max(0,a(t,n))))}).attr("height",function(t,n){return e.utils.NaNtoZero(Math.abs(o(a(t,n))-o(0)))}).attr("transform",function(e,t){return"translate("+(s(u(e,t))-E/w[0].values.length*.45)+",0)"}).on("mouseover",function(e,t){if(!b)return;d3.select(this).classed("hover",!0),y.elementMouseover({point:e,series:w[0],pos:[s(u(e,t)),o(a(e,t))],pointIndex:t,seriesIndex:0,e:d3.event})}).on("mouseout",function(e,t){if(!b)return;d3.select(this).classed("hover",!1),y.elementMouseout({point:e,series:w[0],pointIndex:t,seriesIndex:0,e:d3.event})}).on("click",function(e,t){if(!b)return;y.elementClick({value:a(e,t),data:e,index:t,pos:[s(u(e,t)),o(a(e,t))],e:d3.event,id:i}),d3.event.stopPropagation()}).on("dblclick",function(e,t){if(!b)return;y.elementDblClick({value:a(e,t),data:e,index:t,pos:[s(u(e,t)),o(a(e,t))],e:d3.event,id:i}),d3.event.stopPropagation()});O.attr("fill",function(e,t){return p(e,t)}).attr("class",function(e,t,n){return(a(e,t)<0?"nv-bar negative":"nv-bar positive")+" nv-bar-"+n+"-"+t}).attr("transform",function(e,t){return"translate("+(s(u(e,t))-E/w[0].values.length*.45)+",0)"}).attr("width",E/w[0].values.length*.9),O.attr("y",function(t,n){var r=a(t,n)<0?o(0):o(0)-o(a(t,n))<1?o(0)-1:o(a(t,n));return e.utils.NaNtoZero(r)}).attr("height",function(t,n){return e.utils.NaNtoZero(Math.max(Math.abs(o(a(t,n))-o(0)),1))})}),w}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=Math.floor(Math.random()*1e4),s=d3.scale.linear(),o=d3.scale.linear(),u=function(e){return e.x},a=function(e){return e.y},f=[],l=[0],c=!1,h=!0,p=e.utils.defaultColor(),d,v,m,g,y=d3.dispatch("chartClick","elementClick","elementDblClick","elementMouseover","elementMouseout"),b=!0;return w.highlightPoint=function(e,t){d3.select(".nv-historicalBar-"+i).select(".nv-bars .nv-bar-0-"+e).classed("hover",t)},w.clearHighlights=function(){d3.select(".nv-historicalBar-"+i).select(".nv-bars .nv-bar.hover").classed("hover",!1)},w.dispatch=y,w.options=e.utils.optionsFunc.bind(w),w.x=function(e){return arguments.length?(u=e,w):u},w.y=function(e){return arguments.length?(a=e,w):a},w.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,w):t},w.width=function(e){return arguments.length?(n=e,w):n},w.height=function(e){return arguments.length?(r=e,w):r},w.xScale=function(e){return arguments.length?(s=e,w):s},w.yScale=function(e){return arguments.length?(o=e,w):o},w.xDomain=function(e){return arguments.length?(d=e,w):d},w.yDomain=function(e){return arguments.length?(v=e,w):v},w.xRange=function(e){return arguments.length?(m=e,w):m},w.yRange=function(e){return arguments.length?(g=e,w):g},w.forceX=function(e){return arguments.length?(f=e,w):f},w.forceY=function(e){return arguments.length?(l=e,w):l},w.padData=function(e){return arguments.length?(c=e,w):c},w.clipEdge=function(e){return arguments.length?(h=e,w):h},w.color=function(t){return arguments.length?(p=e.utils.getColor(t),w):p},w.id=function(e){return arguments.length?(i=e,w):i},w.interactive=function(e){return arguments.length?(b=!1,w):b},w},e.models.bullet=function(){function m(e){return e.each(function(e,n){var p=c-t.left-t.right,m=h-t.top-t.bottom,g=d3.select(this),y=i.call(this,e,n).slice().sort(d3.descending),b=s.call(this,e,n).slice().sort(d3.descending),w=o.call(this,e,n).slice().sort(d3.descending),E=u.call(this,e,n).slice(),S=a.call(this,e,n).slice(),x=f.call(this,e,n).slice(),T=d3.scale.linear().domain(d3.extent(d3.merge([l,y]))).range(r?[p,0]:[0,p]),N=this.__chart__||d3.scale.linear().domain([0,Infinity]).range(T.range());this.__chart__=T;var C=d3.min(y),k=d3.max(y),L=y[1],A=g.selectAll("g.nv-wrap.nv-bullet").data([e]),O=A.enter().append("g").attr("class","nvd3 nv-wrap nv-bullet"),M=O.append("g"),_=A.select("g");M.append("rect").attr("class","nv-range nv-rangeMax"),M.append("rect").attr("class","nv-range nv-rangeAvg"),M.append("rect").attr("class","nv-range nv-rangeMin"),M.append("rect").attr("class","nv-measure"),M.append("path").attr("class","nv-markerTriangle"),A.attr("transform","translate("+t.left+","+t.top+")");var D=function(e){return Math.abs(N(e)-N(0))},P=function(e){return Math.abs(T(e)-T(0))},H=function(e){return e<0?N(e):N(0)},B=function(e){return e<0?T(e):T(0)};_.select("rect.nv-rangeMax").attr("height",m).attr("width",P(k>0?k:C)).attr("x",B(k>0?k:C)).datum(k>0?k:C),_.select("rect.nv-rangeAvg").attr("height",m).attr("width",P(L)).attr("x",B(L)).datum(L),_.select("rect.nv-rangeMin").attr("height",m).attr("width",P(k)).attr("x",B(k)).attr("width",P(k>0?C:k)).attr("x",B(k>0?C:k)).datum(k>0?C:k),_.select("rect.nv-measure").style("fill",d).attr("height",m/3).attr("y",m/3).attr("width",w<0?T(0)-T(w[0]):T(w[0])-T(0)).attr("x",B(w)).on("mouseover",function(){v.elementMouseover({value:w[0],label:x[0]||"Current",pos:[T(w[0]),m/2]})}).on("mouseout",function(){v.elementMouseout({value:w[0],label:x[0]||"Current"})});var j=m/6;b[0]?_.selectAll("path.nv-markerTriangle").attr("transform",function(e){return"translate("+T(b[0])+","+m/2+")"}).attr("d","M0,"+j+"L"+j+","+ -j+" "+ -j+","+ -j+"Z").on("mouseover",function(){v.elementMouseover({value:b[0],label:S[0]||"Previous",pos:[T(b[0]),m/2]})}).on("mouseout",function(){v.elementMouseout({value:b[0],label:S[0]||"Previous"})}):_.selectAll("path.nv-markerTriangle").remove(),A.selectAll(".nv-range").on("mouseover",function(e,t){var n=E[t]||(t?t==1?"Mean":"Minimum":"Maximum");v.elementMouseover({value:e,label:n,pos:[T(e),m/2]})}).on("mouseout",function(e,t){var n=E[t]||(t?t==1?"Mean":"Minimum":"Maximum");v.elementMouseout({value:e,label:n})})}),m}var t={top:0,right:0,bottom:0,left:0},n="left",r=!1,i=function(e){return e.ranges},s=function(e){return e.markers},o=function(e){return e.measures},u=function(e){return e.rangeLabels?e.rangeLabels:[]},a=function(e){return e.markerLabels?e.markerLabels:[]},f=function(e){return e.measureLabels?e.measureLabels:[]},l=[0],c=380,h=30,p=null,d=e.utils.getColor(["#1f77b4"]),v=d3.dispatch("elementMouseover","elementMouseout");return m.dispatch=v,m.options=e.utils.optionsFunc.bind(m),m.orient=function(e){return arguments.length?(n=e,r=n=="right"||n=="bottom",m):n},m.ranges=function(e){return arguments.length?(i=e,m):i},m.markers=function(e){return arguments.length?(s=e,m):s},m.measures=function(e){return arguments.length?(o=e,m):o},m.forceX=function(e){return arguments.length?(l=e,m):l},m.width=function(e){return arguments.length?(c=e,m):c},m.height=function(e){return arguments.length?(h=e,m):h},m.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,m):t},m.tickFormat=function(e){return arguments.length?(p=e,m):p},m.color=function(t){return arguments.length?(d=e.utils.getColor(t),m):d},m},e.models.bulletChart=function(){function m(e){return e.each(function(n,h){var g=d3.select(this),y=(a||parseInt(g.style("width"))||960)-i.left-i.right,b=f-i.top-i.bottom,w=this;m.update=function(){m(e)},m.container=this;if(!n||!s.call(this,n,h)){var E=g.selectAll(".nv-noData").data([p]);return E.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),E.attr("x",i.left+y/2).attr("y",18+i.top+b/2).text(function(e){return e}),m}g.selectAll(".nv-noData").remove();var S=s.call(this,n,h).slice().sort(d3.descending),x=o.call(this,n,h).slice().sort(d3.descending),T=u.call(this,n,h).slice().sort(d3.descending),N=g.selectAll("g.nv-wrap.nv-bulletChart").data([n]),C=N.enter().append("g").attr("class","nvd3 nv-wrap nv-bulletChart"),k=C.append("g"),L=N.select("g");k.append("g").attr("class","nv-bulletWrap"),k.append("g").attr("class","nv-titles"),N.attr("transform","translate("+i.left+","+i.top+")");var A=d3.scale.linear().domain([0,Math.max(S[0],x[0],T[0])]).range(r?[y,0]:[0,y]),O=this.__chart__||d3.scale.linear().domain([0,Infinity]).range(A.range());this.__chart__=A;var M=function(e){return Math.abs(O(e)-O(0))},_=function(e){return Math.abs(A(e)-A(0))},D=k.select(".nv-titles").append("g").attr("text-anchor","end").attr("transform","translate(-6,"+(f-i.top-i.bottom)/2+")");D.append("text").attr("class","nv-title").text(function(e){return e.title}),D.append("text").attr("class","nv-subtitle").attr("dy","1em").text(function(e){return e.subtitle}),t.width(y).height(b);var P=L.select(".nv-bulletWrap");d3.transition(P).call(t);var H=l||A.tickFormat(y/100),B=L.selectAll("g.nv-tick").data(A.ticks(y/50),function(e){return this.textContent||H(e)}),j=B.enter().append("g").attr("class","nv-tick").attr("transform",function(e){return"translate("+O(e)+",0)"}).style("opacity",1e-6);j.append("line").attr("y1",b).attr("y2",b*7/6),j.append("text").attr("text-anchor","middle").attr("dy","1em").attr("y",b*7/6).text(H);var F=d3.transition(B).attr("transform",function(e){return"translate("+A(e)+",0)"}).style("opacity",1);F.select("line").attr("y1",b).attr("y2",b*7/6),F.select("text").attr("y",b*7/6),d3.transition(B.exit()).attr("transform",function(e){return"translate("+A(e)+",0)"}).style("opacity",1e-6).remove(),d.on("tooltipShow",function(e){e.key=n.title,c&&v(e,w.parentNode)})}),d3.timer.flush(),m}var t=e.models.bullet(),n="left",r=!1,i={top:5,right:40,bottom:20,left:120},s=function(e){return e.ranges},o=function(e){return e.markers},u=function(e){return e.measures},a=null,f=55,l=null,c=!0,h=function(e,t,n,r,i){return"<h3>"+t+"</h3>"+"<p>"+n+"</p>"},p="No Data Available.",d=d3.dispatch("tooltipShow","tooltipHide"),v=function(t,n){var r=t.pos[0]+(n.offsetLeft||0)+i.left,s=t.pos[1]+(n.offsetTop||0)+i.top,o=h(t.key,t.label,t.value,t,m);e.tooltip.show([r,s],o,t.value<0?"e":"w",null,n)};return t.dispatch.on("elementMouseover.tooltip",function(e){d.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){d.tooltipHide(e)}),d.on("tooltipHide",function(){c&&e.tooltip.cleanup()}),m.dispatch=d,m.bullet=t,d3.rebind(m,t,"color"),m.options=e.utils.optionsFunc.bind(m),m.orient=function(e){return arguments.length?(n=e,r=n=="right"||n=="bottom",m):n},m.ranges=function(e){return arguments.length?(s=e,m):s},m.markers=function(e){return arguments.length?(o=e,m):o},m.measures=function(e){return arguments.length?(u=e,m):u},m.width=function(e){return arguments.length?(a=e,m):a},m.height=function(e){return arguments.length?(f=e,m):f},m.margin=function(e){return arguments.length?(i.top=typeof e.top!="undefined"?e.top:i.top,i.right=typeof e.right!="undefined"?e.right:i.right,i.bottom=typeof e.bottom!="undefined"?e.bottom:i.bottom,i.left=typeof e.left!="undefined"?e.left:i.left,m):i},m.tickFormat=function(e){return arguments.length?(l=e,m):l},m.tooltips=function(e){return arguments.length?(c=e,m):c},m.tooltipContent=function(e){return arguments.length?(h=e,m):h},m.noData=function(e){return arguments.length?(p=e,m):p},m},e.models.cumulativeLineChart=function(){function D(b){return b.each(function(b){function I(e,t){d3.select(D.container).style("cursor","ew-resize")}function q(e,t){M.x=d3.event.x,M.i=Math.round(O.invert(M.x)),nt()}function R(e,t){d3.select(D.container).style("cursor","auto"),x.index=M.i,k.stateChange(x)}function nt(){tt.data([M]);var e=D.transitionDuration();D.transitionDuration(0),D.update(),D.transitionDuration(e)}var L=d3.select(this).classed("nv-chart-"+S,!0),A=this,H=(f||parseInt(L.style("width"))||960)-u.left-u.right,B=(l||parseInt(L.style("height"))||400)-u.top-u.bottom;D.update=function(){L.call(D)},D.container=this,x.disabled=b.map(function(e){return!!e.disabled});if(!T){var j;T={};for(j in x)x[j]instanceof Array?T[j]=x[j].slice(0):T[j]=x[j]}var F=d3.behavior.drag().on("dragstart",I).on("drag",q).on("dragend",R);if(!b||!b.length||!b.filter(function(e){return e.values.length}).length){var U=L.selectAll(".nv-noData").data([N]);return U.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),U.attr("x",u.left+H/2).attr("y",u.top+B/2).text(function(e){return e}),D}L.selectAll(".nv-noData").remove(),w=t.xScale(),E=t.yScale();if(!y){var z=b.filter(function(e){return!e.disabled}).map(function(e,n){var r=d3.extent(e.values,t.y());return r[0]<-0.95&&(r[0]=-0.95),[(r[0]-r[1])/(1+r[1]),(r[1]-r[0])/(1+r[0])]}),W=[d3.min(z,function(e){return e[0]}),d3.max(z,function(e){return e[1]})];t.yDomain(W)}else t.yDomain(null);O.domain([0,b[0].values.length-1]).range([0,H]).clamp(!0);var b=P(M.i,b),X=g?"none":"all",V=L.selectAll("g.nv-wrap.nv-cumulativeLine").data([b]),$=V.enter().append("g").attr("class","nvd3 nv-wrap nv-cumulativeLine").append("g"),J=V.select("g");$.append("g").attr("class","nv-interactive"),$.append("g").attr("class","nv-x nv-axis").style("pointer-events","none"),$.append("g").attr("class","nv-y nv-axis"),$.append("g").attr("class","nv-background"),$.append("g").attr("class","nv-linesWrap").style("pointer-events",X),$.append("g").attr("class","nv-avgLinesWrap").style("pointer-events","none"),$.append("g").attr("class","nv-legendWrap"),$.append("g").attr("class","nv-controlsWrap"),c&&(i.width(H),J.select(".nv-legendWrap").datum(b).call(i),u.top!=i.height()&&(u.top=i.height(),B=(l||parseInt(L.style("height"))||400)-u.top-u.bottom),J.select(".nv-legendWrap").attr("transform","translate(0,"+ -u.top+")"));if(m){var K=[{key:"Re-scale y-axis",disabled:!y}];s.width(140).color(["#444","#444","#444"]).rightAlign(!1).margin({top:5,right:0,bottom:5,left:20}),J.select(".nv-controlsWrap").datum(K).attr("transform","translate(0,"+ -u.top+")").call(s)}V.attr("transform","translate("+u.left+","+u.top+")"),d&&J.select(".nv-y.nv-axis").attr("transform","translate("+H+",0)");var Q=b.filter(function(e){return e.tempDisabled});V.select(".tempDisabled").remove(),Q.length&&V.append("text").attr("class","tempDisabled").attr("x",H/2).attr("y","-.71em").style("text-anchor","end").text(Q.map(function(e){return e.key}).join(", ")+" values cannot be calculated for this time period."),g&&(o.width(H).height(B).margin({left:u.left,top:u.top}).svgContainer(L).xScale(w),V.select(".nv-interactive").call(o)),$.select(".nv-background").append("rect"),J.select(".nv-background rect").attr("width",H).attr("height",B),t.y(function(e){return e.display.y}).width(H).height(B).color(b.map(function(e,t){return e.color||a(e,t)}).filter(function(e,t){return!b[t].disabled&&!b[t].tempDisabled}));var G=J.select(".nv-linesWrap").datum(b.filter(function(e){return!e.disabled&&!e.tempDisabled}));G.call(t),b.forEach(function(e,t){e.seriesIndex=t});var Y=b.filter(function(e){return!e.disabled&&!!C(e)}),Z=J.select(".nv-avgLinesWrap").selectAll("line").data(Y,function(e){return e.key}),et=function(e){var t=E(C(e));return t<0?0:t>B?B:t};Z.enter().append("line").style("stroke-width",2).style("stroke-dasharray","10,10").style("stroke",function(e,n){return t.color()(e,e.seriesIndex)}).attr("x1",0).attr("x2",H).attr("y1",et).attr("y2",et),Z.style("stroke-opacity",function(e){var t=E(C(e));return t<0||t>B?0:1}).attr("x1",0).attr("x2",H).attr("y1",et).attr("y2",et),Z.exit().remove();var tt=G.selectAll(".nv-indexLine").data([M]);tt.enter().append("rect").attr("class","nv-indexLine").attr("width",3).attr("x",-2).attr("fill","red").attr("fill-opacity",.5).style("pointer-events","all").call(F),tt.attr("transform",function(e){return"translate("+O(e.i)+",0)"}).attr("height",B),h&&(n.scale(w).ticks(Math.min(b[0].values.length,H/70)).tickSize(-B,0),J.select(".nv-x.nv-axis").attr("transform","translate(0,"+E.range()[0]+")"),d3.transition(J.select(".nv-x.nv-axis")).call(n)),p&&(r.scale(E).ticks(B/36).tickSize(-H,0),d3.transition(J.select(".nv-y.nv-axis")).call(r)),J.select(".nv-background rect").on("click",function(){M.x=d3.mouse(this)[0],M.i=Math.round(O.invert(M.x)),x.index=M.i,k.stateChange(x),nt()}),t.dispatch.on("elementClick",function(e){M.i=e.pointIndex,M.x=O(M.i),x.index=M.i,k.stateChange(x),nt()}),s.dispatch.on("legendClick",function(e,t){e.disabled=!e.disabled,y=!e.disabled,x.rescaleY=y,k.stateChange(x),D.update()}),i.dispatch.on("stateChange",function(e){x.disabled=e.disabled,k.stateChange(x),D.update()}),o.dispatch.on("elementMousemove",function(i){t.clearHighlights();var s,f,l,c=[];b.filter(function(e,t){return e.seriesIndex=t,!e.disabled}).forEach(function(n,r){f=e.interactiveBisect(n.values,i.pointXValue,D.x()),t.highlightPoint(r,f,!0);var o=n.values[f];if(typeof o=="undefined")return;typeof s=="undefined"&&(s=o),typeof l=="undefined"&&(l=D.xScale()(D.x()(o,f))),c.push({key:n.key,value:D.y()(o,f),color:a(n,n.seriesIndex)})});if(c.length>2){var h=D.yScale().invert(i.mouseY),p=Math.abs(D.yScale().domain()[0]-D.yScale().domain()[1]),d=.03*p,m=e.nearestValueIndex(c.map(function(e){return e.value}),h,d);m!==null&&(c[m].highlight=!0)}var g=n.tickFormat()(D.x()(s,f),f);o.tooltip.position({left:l+u.left,top:i.mouseY+u.top}).chartContainer(A.parentNode).enabled(v).valueFormatter(function(e,t){return r.tickFormat()(e)}).data({value:g,series:c})(),o.renderGuideLine(l)}),o.dispatch.on("elementMouseout",function(e){k.tooltipHide(),t.clearHighlights()}),k.on("tooltipShow",function(e){v&&_(e,A.parentNode)}),k.on("changeState",function(e){typeof e.disabled!="undefined"&&(b.forEach(function(t,n){t.disabled=e.disabled[n]}),x.disabled=e.disabled),typeof e.index!="undefined"&&(M.i=e.index,M.x=O(M.i),x.index=e.index,tt.data([M])),typeof e.rescaleY!="undefined"&&(y=e.rescaleY),D.update()})}),D}function P(e,n){return n.map(function(n,r){if(!n.values)return n;var i=n.values[e];if(i==null)return n;var s=t.y()(i,e);return s<-0.95&&!A?(n.tempDisabled=!0,n):(n.tempDisabled=!1,n.values=n.values.map(function(e,n){return e.display={y:(t.y()(e,n)-s)/(1+s)},e}),n)})}var t=e.models.line(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.models.legend(),o=e.interactiveGuideline(),u={top:30,right:30,bottom:50,left:60},a=e.utils.defaultColor(),f=null,l=null,c=!0,h=!0,p=!0,d=!1,v=!0,m=!0,g=!1,y=!0,b=function(e,t,n,r,i){return"<h3>"+e+"</h3>"+"<p>"+n+" at "+t+"</p>"},w,E,S=t.id(),x={index:0,rescaleY:y},T=null,N="No Data Available.",C=function(e){return e.average},k=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),L=0,A=!1;n.orient("bottom").tickPadding(7),r.orient(d?"right":"left"),s.updateState(!1);var O=d3.scale.linear(),M={i:0,x:0},_=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),a=n.tickFormat()(t.x()(i.point,i.pointIndex)),f=r.tickFormat()(t.y()(i.point,i.pointIndex)),l=b(i.series.key,a,f,i,D);e.tooltip.show([o,u],l,null,null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+u.left,e.pos[1]+u.top],k.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){k.tooltipHide(e)}),k.on("tooltipHide",function(){v&&e.tooltip.cleanup()}),D.dispatch=k,D.lines=t,D.legend=i,D.xAxis=n,D.yAxis=r,D.interactiveLayer=o,d3.rebind(D,t,"defined","isArea","x","y","xScale","yScale","size","xDomain","yDomain","xRange","yRange","forceX","forceY","interactive","clipEdge","clipVoronoi","useVoronoi","id"),D.options=e.utils.optionsFunc.bind(D),D.margin=function(e){return arguments.length?(u.top=typeof e.top!="undefined"?e.top:u.top,u.right=typeof e.right!="undefined"?e.right:u.right,u.bottom=typeof e.bottom!="undefined"?e.bottom:u.bottom,u.left=typeof e.left!="undefined"?e.left:u.left,D):u},D.width=function(e){return arguments.length?(f=e,D):f},D.height=function(e){return arguments.length?(l=e,D):l},D.color=function(t){return arguments.length?(a=e.utils.getColor(t),i.color(a),D):a},D.rescaleY=function(e){return arguments.length?(y=e,D):y},D.showControls=function(e){return arguments.length?(m=e,D):m},D.useInteractiveGuideline=function(e){return arguments.length?(g=e,e===!0&&(D.interactive(!1),D.useVoronoi(!1)),D):g},D.showLegend=function(e){return arguments.length?(c=e,D):c},D.showXAxis=function(e){return arguments.length?(h=e,D):h},D.showYAxis=function(e){return arguments.length?(p=e,D):p},D.rightAlignYAxis=function(e){return arguments.length?(d=e,r.orient(e?"right":"left"),D):d},D.tooltips=function(e){return arguments.length?(v=e,D):v},D.tooltipContent=function(e){return arguments.length?(b=e,D):b},D.state=function(e){return arguments.length?(x=e,D):x},D.defaultState=function(e){return arguments.length?(T=e,D):T},D.noData=function(e){return arguments.length?(N=e,D):N},D.average=function(e){return arguments.length?(C=e,D):C},D.transitionDuration=function(e){return arguments.length?(L=e,D):L},D.noErrorCheck=function(e){return arguments.length?(A=e,D):A},D},e.models.discreteBar=function(){function E(e){return e.each(function(e){var i=n-t.left-t.right,E=r-t.top-t.bottom,S=d3.select(this);e.forEach(function(e,t){e.values.forEach(function(e){e.series=t})});var T=p&&d?[]:e.map(function(e){return e.values.map(function(e,t){return{x:u(e,t),y:a(e,t),y0:e.y0}})});s.domain(p||d3.merge(T).map(function(e){return e.x})).rangeBands(v||[0,i],.1),o.domain(d||d3.extent(d3.merge(T).map(function(e){return e.y}).concat(f))),c?o.range(m||[E-(o.domain()[0]<0?12:0),o.domain()[1]>0?12:0]):o.range(m||[E,0]),b=b||s,w=w||o.copy().range([o(0),o(0)]);var N=S.selectAll("g.nv-wrap.nv-discretebar").data([e]),C=N.enter().append("g").attr("class","nvd3 nv-wrap nv-discretebar"),k=C.append("g"),L=N.select("g");k.append("g").attr("class","nv-groups"),N.attr("transform","translate("+t.left+","+t.top+")");var A=N.select(".nv-groups").selectAll(".nv-group").data(function(e){return e},function(e){return e.key});A.enter().append("g").style("stroke-opacity",1e-6).style("fill-opacity",1e-6),A.exit().style("stroke-opacity",1e-6).style("fill-opacity",1e-6).remove(),A.attr("class",function(e,t){return"nv-group nv-series-"+t}).classed("hover",function(e){return e.hover}),A.style("stroke-opacity",1).style("fill-opacity",.75);var O=A.selectAll("g.nv-bar").data(function(e){return e.values});O.exit().remove();var M=O.enter().append("g").attr("transform",function(e,t,n){return"translate("+(s(u(e,t))+s.rangeBand()*.05)+", "+o(0)+")"}).on("mouseover",function(t,n){d3.select(this).classed("hover",!0),g.elementMouseover({value:a(t,n),point:t,series:e[t.series],pos:[s(u(t,n))+s.rangeBand()*(t.series+.5)/e.length,o(a(t,n))],pointIndex:n,seriesIndex:t.series,e:d3.event})}).on("mouseout",function(t,n){d3.select(this).classed("hover",!1),g.elementMouseout({value:a(t,n),point:t,series:e[t.series],pointIndex:n,seriesIndex:t.series,e:d3.event})}).on("click",function(t,n){g.elementClick({value:a(t,n),point:t,series:e[t.series],pos:[s(u(t,n))+s.rangeBand()*(t.series+.5)/e.length,o(a(t,n))],pointIndex:n,seriesIndex:t.series,e:d3.event}),d3.event.stopPropagation()}).on("dblclick",function(t,n){g.elementDblClick({value:a(t,n),point:t,series:e[t.series],pos:[s(u(t,n))+s.rangeBand()*(t.series+.5)/e.length,o(a(t,n))],pointIndex:n,seriesIndex:t.series,e:d3.event}),d3.event.stopPropagation()});M.append("rect").attr("height",0).attr("width",s.rangeBand()*.9/e.length),c?(M.append("text").attr("text-anchor","middle"),O.select("text").text(function(e,t){return h(a(e,t))}).attr("x",s.rangeBand()*.9/2).attr("y",function(e,t){return a(e,t)<0?o(a(e,t))-o(0)+12:-4})):O.selectAll("text").remove(),O.attr("class",function(e,t){return a(e,t)<0?"nv-bar negative":"nv-bar positive"}).style("fill",function(e,t){return e.color||l(e,t)}).style("stroke",function(e,t){return e.color||l(e,t)}).select("rect").attr("class",y).attr("width",s.rangeBand()*.9/e.length),O.attr("transform",function(e,t){var n=s(u(e,t))+s.rangeBand()*.05,r=a(e,t)<0?o(0):o(0)-o(a(e,t))<1?o(0)-1:o(a(e,t));return"translate("+n+", "+r+")"}).select("rect").attr("height",function(e,t){return Math.max(Math.abs(o(a(e,t))-o(d&&d[0]||0))||1)}),b=s.copy(),w=o.copy()}),E}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=Math.floor(Math.random()*1e4),s=d3.scale.ordinal(),o=d3.scale.linear(),u=function(e){return e.x},a=function(e){return e.y},f=[0],l=e.utils.defaultColor(),c=!1,h=d3.format(",.2f"),p,d,v,m,g=d3.dispatch("chartClick","elementClick","elementDblClick","elementMouseover","elementMouseout"),y="discreteBar",b,w;return E.dispatch=g,E.options=e.utils.optionsFunc.bind(E),E.x=function(e){return arguments.length?(u=e,E):u},E.y=function(e){return arguments.length?(a=e,E):a},E.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,E):t},E.width=function(e){return arguments.length?(n=e,E):n},E.height=function(e){return arguments.length?(r=e,E):r},E.xScale=function(e){return arguments.length?(s=e,E):s},E.yScale=function(e){return arguments.length?(o=e,E):o},E.xDomain=function(e){return arguments.length?(p=e,E):p},E.yDomain=function(e){return arguments.length?(d=e,E):d},E.xRange=function(e){return arguments.length?(v=e,E):v},E.yRange=function(e){return arguments.length?(m=e,E):m},E.forceY=function(e){return arguments.length?(f=e,E):f},E.color=function(t){return arguments.length?(l=e.utils.getColor(t),E):l},E.id=function(e){return arguments.length?(i=e,E):i},E.showValues=function(e){return arguments.length?(c=e,E):c},E.valueFormat=function(e){return arguments.length?(h=e,E):h},E.rectClass=function(e){return arguments.length?(y=e,E):y},E},e.models.discreteBarChart=function(){function w(e){return e.each(function(e){var u=d3.select(this),p=this,y=(s||parseInt(u.style("width"))||960)-i.left-i.right,E=(o||parseInt(u.style("height"))||400)-i.top-i.bottom;w.update=function(){g.beforeUpdate(),u.call(w)},w.container=this;if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var S=u.selectAll(".nv-noData").data([m]);return S.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),S.attr("x",i.left+y/2).attr("y",i.top+E/2).text(function(e){return e}),w}u.selectAll(".nv-noData").remove(),d=t.xScale(),v=t.yScale().clamp(!0);var T=u.selectAll("g.nv-wrap.nv-discreteBarWithAxes").data([e]),N=T.enter().append("g").attr("class","nvd3 nv-wrap nv-discreteBarWithAxes").append("g"),C=N.append("defs"),k=T.select("g");N.append("g").attr("class","nv-x nv-axis"),N.append("g").attr("class","nv-y nv-axis").append("g").attr("class","nv-zeroLine").append("line"),N.append("g").attr("class","nv-barsWrap"),k.attr("transform","translate("+i.left+","+i.top+")"),l&&k.select(".nv-y.nv-axis").attr("transform","translate("+y+",0)"),t.width(y).height(E);var L=k.select(".nv-barsWrap").datum(e.filter(function(e){return!e.disabled}));L.call(t),C.append("clipPath").attr("id","nv-x-label-clip-"+t.id()).append("rect"),k.select("#nv-x-label-clip-"+t.id()+" rect").attr("width",d.rangeBand()*(c?2:1)).attr("height",16).attr("x",-d.rangeBand()/(c?1:2));if(a){n.scale(d).ticks(y/100).tickSize(-E,0),k.select(".nv-x.nv-axis").attr("transform","translate(0,"+(v.range()[0]+(t.showValues()&&v.domain()[0]<0?16:0))+")"),k.select(".nv-x.nv-axis").call(n);var A=k.select(".nv-x.nv-axis").selectAll("g");c&&A.selectAll("text").attr("transform",function(e,t,n){return"translate(0,"+(n%2==0?"5":"17")+")"})}f&&(r.scale(v).ticks(E/36).tickSize(-y,0),k.select(".nv-y.nv-axis").call(r)),k.select(".nv-zeroLine line").attr("x1",0).attr("x2",y).attr("y1",v(0)).attr("y2",v(0)),g.on("tooltipShow",function(e){h&&b(e,p.parentNode)})}),w}var t=e.models.discreteBar(),n=e.models.axis(),r=e.models.axis(),i={top:15,right:10,bottom:50,left:60},s=null,o=null,u=e.utils.getColor(),a=!0,f=!0,l=!1,c=!1,h=!0,p=function(e,t,n,r,i){return"<h3>"+t+"</h3>"+"<p>"+n+"</p>"},d,v,m="No Data Available.",g=d3.dispatch("tooltipShow","tooltipHide","beforeUpdate"),y=0;n.orient("bottom").highlightZero(!1).showMaxMin(!1).tickFormat(function(e){return e}),r.orient(l?"right":"left").tickFormat(d3.format(",.1f"));var b=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),a=n.tickFormat()(t.x()(i.point,i.pointIndex)),f=r.tickFormat()(t.y()(i.point,i.pointIndex)),l=p(i.series.key,a,f,i,w);e.tooltip.show([o,u],l,i.value<0?"n":"s",null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+i.left,e.pos[1]+i.top],g.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){g.tooltipHide(e)}),g.on("tooltipHide",function(){h&&e.tooltip.cleanup()}),w.dispatch=g,w.discretebar=t,w.xAxis=n,w.yAxis=r,d3.rebind(w,t,"x","y","xDomain","yDomain","xRange","yRange","forceX","forceY","id","showValues","valueFormat"),w.options=e.utils.optionsFunc.bind(w),w.margin=function(e){return arguments.length?(i.top=typeof e.top!="undefined"?e.top:i.top,i.right=typeof e.right!="undefined"?e.right:i.right,i.bottom=typeof e.bottom!="undefined"?e.bottom:i.bottom,i.left=typeof e.left!="undefined"?e.left:i.left,w):i},w.width=function(e){return arguments.length?(s=e,w):s},w.height=function(e){return arguments.length?(o=e,w):o},w.color=function(n){return arguments.length?(u=e.utils.getColor(n),t.color(u),w):u},w.showXAxis=function(e){return arguments.length?(a=e,w):a},w.showYAxis=function(e){return arguments.length?(f=e,w):f},w.rightAlignYAxis=function(e){return arguments.length?(l=e,r.orient(e?"right":"left"),w):l},w.staggerLabels=function(e){return arguments.length?(c=e,w):c},w.tooltips=function(e){return arguments.length?(h=e,w):h},w.tooltipContent=function(e){return arguments.length?(p=e,w):p},w.noData=function(e){return arguments.length?(m=e,w):m},w.transitionDuration=function(e){return arguments.length?(y=e,w):y},w},e.models.distribution=function(){function l(e){return e.each(function(e){var a=n-(i==="x"?t.left+t.right:t.top+t.bottom),l=i=="x"?"y":"x",c=d3.select(this);f=f||u;var h=c.selectAll("g.nv-distribution").data([e]),p=h.enter().append("g").attr("class","nvd3 nv-distribution"),d=p.append("g"),v=h.select("g");h.attr("transform","translate("+t.left+","+t.top+")");var m=v.selectAll("g.nv-dist").data(function(e){return e},function(e){return e.key});m.enter().append("g"),m.attr("class",function(e,t){return"nv-dist nv-series-"+t}).style("stroke",function(e,t){return o(e,t)});var g=m.selectAll("line.nv-dist"+i).data(function(e){return e.values});g.enter().append("line").attr(i+"1",function(e,t){return f(s(e,t))}).attr(i+"2",function(e,t){return f(s(e,t))}),m.exit().selectAll("line.nv-dist"+i).attr(i+"1",function(e,t){return u(s(e,t))}).attr(i+"2",function(e,t){return u(s(e,t))}).style("stroke-opacity",0).remove(),g.attr("class",function(e,t){return"nv-dist"+i+" nv-dist"+i+"-"+t}).attr(l+"1",0).attr(l+"2",r),g.attr(i+"1",function(e,t){return u(s(e,t))}).attr(i+"2",function(e,t){return u(s(e,t))}),f=u.copy()}),l}var t={top:0,right:0,bottom:0,left:0},n=400,r=8,i="x",s=function(e){return e[i]},o=e.utils.defaultColor(),u=d3.scale.linear(),a,f;return l.options=e.utils.optionsFunc.bind(l),l.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,l):t},l.width=function(e){return arguments.length?(n=e,l):n},l.axis=function(e){return arguments.length?(i=e,l):i},l.size=function(e){return arguments.length?(r=e,l):r},l.getData=function(e){return arguments.length?(s=d3.functor(e),l):s},l.scale=function(e){return arguments.length?(u=e,l):u},l.color=function(t){return arguments.length?(o=e.utils.getColor(t),l):o},l},e.models.historicalBarChart=function(){function x(e){return e.each(function(d){var E=d3.select(this),T=this,N=(u||parseInt(E.style("width"))||960)-s.left-s.right,C=(a||parseInt(E.style("height"))||400)-s.top-s.bottom;x.update=function(){E.call(x)},x.container=this,g.disabled=d.map(function(e){return!!e.disabled});if(!y){var k;y={};for(k in g)g[k]instanceof Array?y[k]=g[k].slice(0):y[k]=g[k]}if(!d||!d.length||!d.filter(function(e){return e.values.length}).length){var L=E.selectAll(".nv-noData").data([b]);return L.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),L.attr("x",s.left+N/2).attr("y",s.top+C/2).text(function(e){return e}),x}E.selectAll(".nv-noData").remove(),v=t.xScale(),m=t.yScale();var A=E.selectAll("g.nv-wrap.nv-historicalBarChart").data([d]),O=A.enter().append("g").attr("class","nvd3 nv-wrap nv-historicalBarChart").append("g"),M=A.select("g");O.append("g").attr("class","nv-x nv-axis"),O.append("g").attr("class","nv-y nv-axis"),O.append("g").attr("class","nv-barsWrap"),O.append("g").attr("class","nv-legendWrap"),f&&(i.width(N),M.select(".nv-legendWrap").datum(d).call(i),s.top!=i.height()&&(s.top=i.height(),C=(a||parseInt(E.style("height"))||400)-s.top-s.bottom),A.select(".nv-legendWrap").attr("transform","translate(0,"+ -s.top+")")),A.attr("transform","translate("+s.left+","+s.top+")"),h&&M.select(".nv-y.nv-axis").attr("transform","translate("+N+",0)"),t.width(N).height(C).color(d.map(function(e,t){return e.color||o(e,t)}).filter(function(e,t){return!d[t].disabled}));var _=M.select(".nv-barsWrap").datum(d.filter(function(e){return!e.disabled}));_.call(t),l&&(n.scale(v).tickSize(-C,0),M.select(".nv-x.nv-axis").attr("transform","translate(0,"+m.range()[0]+")"),M.select(".nv-x.nv-axis").call(n)),c&&(r.scale(m).ticks(C/36).tickSize(-N,0),M.select(".nv-y.nv-axis").call(r)),i.dispatch.on("legendClick",function(t,n){t.disabled=!t.disabled,d.filter(function(e){return!e.disabled}).length||d.map(function(e){return e.disabled=!1,A.selectAll(".nv-series").classed("disabled",!1),e}),g.disabled=d.map(function(e){return!!e.disabled}),w.stateChange(g),e.call(x)}),i.dispatch.on("legendDblclick",function(e){d.forEach(function(e){e.disabled=!0}),e.disabled=!1,g.disabled=d.map(function(e){return!!e.disabled}),w.stateChange(g),x.update()}),w.on("tooltipShow",function(e){p&&S(e,T.parentNode)}),w.on("changeState",function(e){typeof e.disabled!="undefined"&&(d.forEach(function(t,n){t.disabled=e.disabled[n]}),g.disabled=e.disabled),x.update()})}),x}var t=e.models.historicalBar(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s={top:30,right:90,bottom:50,left:90},o=e.utils.defaultColor(),u=null,a=null,f=!1,l=!0,c=!0,h=!1,p=!0,d=function(e,t,n,r,i){return"<h3>"+e+"</h3>"+"<p>"+n+" at "+t+"</p>"},v,m,g={},y=null,b="No Data Available.",w=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),E=0;n.orient("bottom").tickPadding(7),r.orient(h?"right":"left");var S=function(i,s){if(s){var o=d3.select(s).select("svg"),u=o.node()?o.attr("viewBox"):null;if(u){u=u.split(" ");var a=parseInt(o.style("width"))/u[2];i.pos[0]=i.pos[0]*a,i.pos[1]=i.pos[1]*a}}var f=i.pos[0]+(s.offsetLeft||0),l=i.pos[1]+(s.offsetTop||0),c=n.tickFormat()(t.x()(i.point,i.pointIndex)),h=r.tickFormat()(t.y()(i.point,i.pointIndex)),p=d(i.series.key,c,h,i,x);e.tooltip.show([f,l],p,null,null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+s.left,e.pos[1]+s.top],w.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){w.tooltipHide(e)}),w.on("tooltipHide",function(){p&&e.tooltip.cleanup()}),x.dispatch=w,x.bars=t,x.legend=i,x.xAxis=n,x.yAxis=r,d3.rebind(x,t,"defined","isArea","x","y","size","xScale","yScale","xDomain","yDomain","xRange","yRange","forceX","forceY","interactive","clipEdge","clipVoronoi","id","interpolate","highlightPoint","clearHighlights","interactive"),x.options=e.utils.optionsFunc.bind(x),x.margin=function(e){return arguments.length?(s.top=typeof e.top!="undefined"?e.top:s.top,s.right=typeof e.right!="undefined"?e.right:s.right,s.bottom=typeof e.bottom!="undefined"?e.bottom:s.bottom,s.left=typeof e.left!="undefined"?e.left:s.left,x):s},x.width=function(e){return arguments.length?(u=e,x):u},x.height=function(e){return arguments.length?(a=e,x):a},x.color=function(t){return arguments.length?(o=e.utils.getColor(t),i.color(o),x):o},x.showLegend=function(e){return arguments.length?(f=e,x):f},x.showXAxis=function(e){return arguments.length?(l=e,x):l},x.showYAxis=function(e){return arguments.length?(c=e,x):c},x.rightAlignYAxis=function(e){return arguments.length?(h=e,r.orient(e?"right":"left"),x):h},x.tooltips=function(e){return arguments.length?(p=e,x):p},x.tooltipContent=function(e){return arguments.length?(d=e,x):d},x.state=function(e){return arguments.length?(g=e,x):g},x.defaultState=function(e){return arguments.length?(y=e,x):y},x.noData=function(e){return arguments.length?(b=e,x):b},x.transitionDuration=function(e){return arguments.length?(E=e,x):E},x},e.models.indentedTree=function(){function g(e){return e.each(function(e){function k(e,t,n){d3.event.stopPropagation();if(d3.event.shiftKey&&!n)return d3.event.shiftKey=!1,e.values&&e.values.forEach(function(e){(e.values||e._values)&&k(e,0,!0)}),!0;if(!O(e))return!0;e.values?(e._values=e.values,e.values=null):(e.values=e._values,e._values=null),g.update()}function L(e){return e._values&&e._values.length?h:e.values&&e.values.length?p:""}function A(e){return e._values&&e._values.length}function O(e){var t=e.values||e._values;return t&&t.length}var t=1,n=d3.select(this),i=d3.layout.tree().children(function(e){return e.values}).size([r,f]);g.update=function(){n.call(g)},e[0]||(e[0]={key:a});var s=i.nodes(e[0]),y=d3.select(this).selectAll("div").data([[s]]),b=y.enter().append("div").attr("class","nvd3 nv-wrap nv-indentedtree"),w=b.append("table"),E=y.select("table").attr("width","100%").attr("class",c);if(o){var S=w.append("thead"),x=S.append("tr");l.forEach(function(e){x.append("th").attr("width",e.width?e.width:"10%").style("text-align",e.type=="numeric"?"right":"left").append("span").text(e.label)})}var T=E.selectAll("tbody").data(function(e){return e});T.enter().append("tbody"),t=d3.max(s,function(e){return e.depth}),i.size([r,t*f]);var N=T.selectAll("tr").data(function(e){return e.filter(function(e){return u&&!e.children?u(e):!0})},function(e,t){return e.id||e.id||++m});N.exit().remove(),N.select("img.nv-treeicon").attr("src",L).classed("folded",A);var C=N.enter().append("tr");l.forEach(function(e,t){var n=C.append("td").style("padding-left",function(e){return(t?0:e.depth*f+12+(L(e)?0:16))+"px"},"important").style("text-align",e.type=="numeric"?"right":"left");t==0&&n.append("img").classed("nv-treeicon",!0).classed("nv-folded",A).attr("src",L).style("width","14px").style("height","14px").style("padding","0 1px").style("display",function(e){return L(e)?"inline-block":"none"}).on("click",k),n.each(function(n){!t&&v(n)?d3.select(this).append("a").attr("href",v).attr("class",d3.functor(e.classes)).append("span"):d3.select(this).append("span"),d3.select(this).select("span").attr("class",d3.functor(e.classes)).text(function(t){return e.format?t[e.key]?e.format(t[e.key]):"-":t[e.key]||"-"})}),e.showCount&&(n.append("span").attr("class","nv-childrenCount"),N.selectAll("span.nv-childrenCount").text(function(e){return e.values&&e.values.length||e._values&&e._values.length?"("+(e.values&&e.values.filter(function(e){return u?u(e):!0}).length||e._values&&e._values.filter(function(e){return u?u(e):!0}).length||0)+")":""}))}),N.order().on("click",function(e){d.elementClick({row:this,data:e,pos:[e.x,e.y]})}).on("dblclick",function(e){d.elementDblclick({row:this,data:e,pos:[e.x,e.y]})}).on("mouseover",function(e){d.elementMouseover({row:this,data:e,pos:[e.x,e.y]})}).on("mouseout",function(e){d.elementMouseout({row:this,data:e,pos:[e.x,e.y]})})}),g}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=e.utils.defaultColor(),s=Math.floor(Math.random()*1e4),o=!0,u=!1,a="No Data Available.",f=20,l=[{key:"key",label:"Name",type:"text"}],c=null,h="images/grey-plus.png",p="images/grey-minus.png",d=d3.dispatch("elementClick","elementDblclick","elementMouseover","elementMouseout"),v=function(e){return e.url},m=0;return g.options=e.utils.optionsFunc.bind(g),g.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,g):t},g.width=function(e){return arguments.length?(n=e,g):n},g.height=function(e){return arguments.length?(r=e,g):r},g.color=function(t){return arguments.length?(i=e.utils.getColor(t),scatter.color(i),g):i},g.id=function(e){return arguments.length?(s=e,g):s},g.header=function(e){return arguments.length?(o=e,g):o},g.noData=function(e){return arguments.length?(a=e,g):a},g.filterZero=function(e){return arguments.length?(u=e,g):u},g.columns=function(e){return arguments.length?(l=e,g):l},g.tableClass=function(e){return arguments.length?(c=e,g):c},g.iconOpen=function(e){return arguments.length?(h=e,g):h},g.iconClose=function(e){return arguments.length?(p=e,g):p},g.getUrl=function(e){return arguments.length?(v=e,g):v},g},e.models.legend=function(){function c(h){return h.each(function(c){var h=n-t.left-t.right,p=d3.select(this),d=p.selectAll("g.nv-legend").data([c]),v=d.enter().append("g").attr("class","nvd3 nv-legend").append("g"),m=d.select("g");d.attr("transform","translate("+t.left+","+t.top+")");var g=m.selectAll(".nv-series").data(function(e){return e}),y=g.enter().append("g").attr("class","nv-series").on("mouseover",function(e,t){l.legendMouseover(e,t)}).on("mouseout",function(e,t){l.legendMouseout(e,t)}).on("click",function(e,t){l.legendClick(e,t),a&&(f?(c.forEach(function(e){e.disabled=!0}),e.disabled=!1):(e.disabled=!e.disabled,c.every(function(e){return e.disabled})&&c.forEach(function(e){e.disabled=!1})),l.stateChange({disabled:c.map(function(e){return!!e.disabled})}))}).on("dblclick",function(e,t){l.legendDblclick(e,t),a&&(c.forEach(function(e){e.disabled=!0}),e.disabled=!1,l.stateChange({disabled:c.map(function(e){return!!e.disabled})}))});y.append("circle").style("stroke-width",2).attr("class","nv-legend-symbol").attr("r",5),y.append("text").attr("text-anchor","start").attr("class","nv-legend-text").attr("dy",".32em").attr("dx","8"),g.classed("disabled",function(e){return e.disabled}),g.exit().remove(),g.select("circle").style("fill",function(e,t){return e.color||s(e,t)}).style("stroke",function(e,t){return e.color||s(e,t)}),g.select("text").text(i);if(o){var b=[];g.each(function(t,n){var r=d3.select(this).select("text"),i;try{i=r.getComputedTextLength();if(i<=0)throw Error()}catch(s){i=e.utils.calcApproxTextWidth(r)}b.push(i+28)});var w=0,E=0,S=[];while(E<h&&w<b.length)S[w]=b[w],E+=b[w++];w===0&&(w=1);while(E>h&&w>1){S=[],w--;for(var x=0;x<b.length;x++)b[x]>(S[x%w]||0)&&(S[x%w]=b[x]);E=S.reduce(function(e,t,n,r){return e+t})}var T=[];for(var N=0,C=0;N<w;N++)T[N]=C,C+=S[N];g.attr("transform",function(e,t){return"translate("+T[t%w]+","+(5+Math.floor(t/w)*20)+")"}),u?m.attr("transform","translate("+(n-t.right-E)+","+t.top+")"):m.attr("transform","translate(0,"+t.top+")"),r=t.top+t.bottom+Math.ceil(b.length/w)*20}else{var k=5,L=5,A=0,O;g.attr("transform",function(e,r){var i=d3.select(this).select("text").node().getComputedTextLength()+28;return O=L,n<t.left+t.right+O+i&&(L=O=5,k+=20),L+=i,L>A&&(A=L),"translate("+O+","+k+")"}),m.attr("transform","translate("+(n-t.right-A)+","+t.top+")"),r=t.top+t.bottom+k+15}}),c}var t={top:5,right:0,bottom:5,left:0},n=400,r=20,i=function(e){return e.key},s=e.utils.defaultColor(),o=!0,u=!0,a=!0,f=!1,l=d3.dispatch("legendClick","legendDblclick","legendMouseover","legendMouseout","stateChange");return c.dispatch=l,c.options=e.utils.optionsFunc.bind(c),c.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,c):t},c.width=function(e){return arguments.length?(n=e,c):n},c.height=function(e){return arguments.length?(r=e,c):r},c.key=function(e){return arguments.length?(i=e,c):i},c.color=function(t){return arguments.length?(s=e.utils.getColor(t),c):s},c.align=function(e){return arguments.length?(o=e,c):o},c.rightAlign=function(e){return arguments.length?(u=e,c):u},c.updateState=function(e){return arguments.length?(a=e,c):a},c.radioButtonMode=function(e){return arguments.length?(f=e,c):f},c},e.models.line=function(){function m(g){return g.each(function(m){var g=r-n.left-n.right,b=i-n.top-n.bottom,w=d3.select(this);c=t.xScale(),h=t.yScale(),d=d||c,v=v||h;var E=w.selectAll("g.nv-wrap.nv-line").data([m]),S=E.enter().append("g").attr("class","nvd3 nv-wrap nv-line"),T=S.append("defs"),N=S.append("g"),C=E.select("g");N.append("g").attr("class","nv-groups"),N.append("g").attr("class","nv-scatterWrap"),E.attr("transform","translate("+n.left+","+n.top+")"),t.width(g).height(b);var k=E.select(".nv-scatterWrap");k.call(t),T.append("clipPath").attr("id","nv-edge-clip-"+t.id()).append("rect"),E.select("#nv-edge-clip-"+t.id()+" rect").attr("width",g).attr("height",b>0?b:0),C.attr("clip-path",l?"url(#nv-edge-clip-"+t.id()+")":""),k.attr("clip-path",l?"url(#nv-edge-clip-"+t.id()+")":"");var L=E.select(".nv-groups").selectAll(".nv-group").data(function(e){return e},function(e){return e.key});L.enter().append("g").style("stroke-opacity",1e-6).style("fill-opacity",1e-6),L.exit().remove(),L.attr("class",function(e,t){return"nv-group nv-series-"+t}).classed("hover",function(e){return e.hover}).style("fill",function(e,t){return s(e,t)}).style("stroke",function(e,t){return s(e,t)}),L.style("stroke-opacity",1).style("fill-opacity",.5);var A=L.selectAll("path.nv-area").data(function(e){return f(e)?[e]:[]});A.enter().append("path").attr("class","nv-area").attr("d",function(t){return d3.svg.area().interpolate(p).defined(a).x(function(t,n){return e.utils.NaNtoZero(d(o(t,n)))}).y0(function(t,n){return e.utils.NaNtoZero(v(u(t,n)))}).y1(function(e,t){return v(h.domain()[0]<=0?h.domain()[1]>=0?0:h.domain()[1]:h.domain()[0])}).apply(this,[t.values])}),L.exit().selectAll("path.nv-area").remove(),A.attr("d",function(t){return d3.svg.area().interpolate(p).defined(a).x(function(t,n){return e.utils.NaNtoZero(c(o(t,n)))}).y0(function(t,n){return e.utils.NaNtoZero(h(u(t,n)))}).y1(function(e,t){return h(h.domain()[0]<=0?h.domain()[1]>=0?0:h.domain()[1]:h.domain()[0])}).apply(this,[t.values])});var O=L.selectAll("path.nv-line").data(function(e){return[e.values]});O.enter().append("path").attr("class","nv-line").attr("d",d3.svg.line().interpolate(p).defined(a).x(function(t,n){return e.utils.NaNtoZero(d(o(t,n)))}).y(function(t,n){return e.utils.NaNtoZero(v(u(t,n)))})),O.attr("d",d3.svg.line().interpolate(p).defined(a).x(function(t,n){return e.utils.NaNtoZero(c(o(t,n)))}).y(function(t,n){return e.utils.NaNtoZero(h(u(t,n)))})),d=c.copy(),v=h.copy()}),m}var t=e.models.scatter(),n={top:0,right:0,bottom:0,left:0},r=960,i=500,s=e.utils.defaultColor(),o=function(e){return e.x},u=function(e){return e.y},a=function(e,t){return!isNaN(u(e,t))&&u(e,t)!==null},f=function(e){return e.area},l=!1,c,h,p="linear";t.size(16).sizeDomain([16,256]);var d,v;return m.dispatch=t.dispatch,m.scatter=t,d3.rebind(m,t,"id","interactive","size","xScale","yScale","zScale","xDomain","yDomain","xRange","yRange","sizeDomain","forceX","forceY","forceSize","clipVoronoi","useVoronoi","clipRadius","padData","highlightPoint","clearHighlights"),m.options=e.utils.optionsFunc.bind(m),m.margin=function(e){return arguments.length?(n.top=typeof e.top!="undefined"?e.top:n.top,n.right=typeof e.right!="undefined"?e.right:n.right,n.bottom=typeof e.bottom!="undefined"?e.bottom:n.bottom,n.left=typeof e.left!="undefined"?e.left:n.left,m):n},m.width=function(e){return arguments.length?(r=e,m):r},m.height=function(e){return arguments.length?(i=e,m):i},m.x=function(e){return arguments.length?(o=e,t.x(e),m):o},m.y=function(e){return arguments.length?(u=e,t.y(e),m):u},m.clipEdge=function(e){return arguments.length?(l=e,m):l},m.color=function(n){return arguments.length?(s=e.utils.getColor(n),t.color(s),m):s},m.interpolate=function(e){return arguments.length?(p=e,m):p},m.defined=function(e){return arguments.length?(a=e,m):a},m.isArea=function(e){return arguments.length?(f=d3.functor(e),m):f},m},e.models.lineChart=function(){function N(m){return m.each(function(m){var x=d3.select(this),C=this,k=(a||parseInt(x.style("width"))||960)-o.left-o.right,L=(f||parseInt(x.style("height"))||400)-o.top-o.bottom;N.update=function(){x.call(N)},N.container=this,b.disabled=m.map(function(e){return!!e.disabled});if(!w){var A;w={};for(A in b)b[A]instanceof Array?w[A]=b[A].slice(0):w[A]=b[A]}if(!m||!m.length||!m.filter(function(e){return e.values.length}).length){var O=x.selectAll(".nv-noData").data([E]);return O.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),O.attr("x",o.left+k/2).attr("y",o.top+L/2).text(function(e){return e}),N}x.selectAll(".nv-noData").remove(),g=t.xScale(),y=t.yScale();var M=x.selectAll("g.nv-wrap.nv-lineChart").data([m]),_=M.enter().append("g").attr("class","nvd3 nv-wrap nv-lineChart").append("g"),D=M.select("g");_.append("rect").style("opacity",0),_.append("g").attr("class","nv-x nv-axis"),_.append("g").attr("class","nv-y nv-axis"),_.append("g").attr("class","nv-linesWrap"),_.append("g").attr("class","nv-legendWrap"),_.append("g").attr("class","nv-interactive"),D.select("rect").attr("width",k).attr("height",L>0?L:0),l&&(i.width(k),D.select(".nv-legendWrap").datum(m).call(i),o.top!=i.height()&&(o.top=i.height(),L=(f||parseInt(x.style("height"))||400)-o.top-o.bottom),M.select(".nv-legendWrap").attr("transform","translate(0,"+ -o.top+")")),M.attr("transform","translate("+o.left+","+o.top+")"),p&&D.select(".nv-y.nv-axis").attr("transform","translate("+k+",0)"),d&&(s.width(k).height(L).margin({left:o.left,top:o.top}).svgContainer(x).xScale(g),M.select(".nv-interactive").call(s)),t.width(k).height(L).color(m.map(function(e,t){return e.color||u(e,t)}).filter(function(e,t){return!m[t].disabled}));var P=D.select(".nv-linesWrap").datum(m.filter(function(e){return!e.disabled}));P.call(t),c&&(n.scale(g).ticks(k/100).tickSize(-L,0),D.select(".nv-x.nv-axis").attr("transform","translate(0,"+y.range()[0]+")"),D.select(".nv-x.nv-axis").call(n)),h&&(r.scale(y).ticks(L/36).tickSize(-k,0),D.select(".nv-y.nv-axis").call(r)),i.dispatch.on("stateChange",function(e){b=e,S.stateChange(b),N.update()}),s.dispatch.on("elementMousemove",function(i){t.clearHighlights();var a,f,l,c=[];m.filter(function(e,t){return e.seriesIndex=t,!e.disabled}).forEach(function(n,r){f=e.interactiveBisect(n.values,i.pointXValue,N.x()),t.highlightPoint(r,f,!0);var s=n.values[f];if(typeof s=="undefined")return;typeof a=="undefined"&&(a=s),typeof l=="undefined"&&(l=N.xScale()(N.x()(s,f))),c.push({key:n.key,value:N.y()(s,f),color:u(n,n.seriesIndex)})});if(c.length>2){var h=N.yScale().invert(i.mouseY),p=Math.abs(N.yScale().domain()[0]-N.yScale().domain()[1]),d=.03*p,g=e.nearestValueIndex(c.map(function(e){return e.value}),h,d);g!==null&&(c[g].highlight=!0)}var y=n.tickFormat()(N.x()(a,f));s.tooltip.position({left:l+o.left,top:i.mouseY+o.top}).chartContainer(C.parentNode).enabled(v).valueFormatter(function(e,t){return r.tickFormat()(e)}).data({value:y,series:c})(),s.renderGuideLine(l)}),s.dispatch.on("elementMouseout",function(e){S.tooltipHide(),t.clearHighlights()}),S.on("tooltipShow",function(e){v&&T(e,C.parentNode)}),S.on("changeState",function(e){typeof e.disabled!="undefined"&&m.length===e.disabled.length&&(m.forEach(function(t,n){t.disabled=e.disabled[n]}),b.disabled=e.disabled),N.update()})}),N}var t=e.models.line(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.interactiveGuideline(),o={top:30,right:20,bottom:50,left:60},u=e.utils.defaultColor(),a=null,f=null,l=!0,c=!0,h=!0,p=!1,d=!1,v=!0,m=function(e,t,n,r,i){return"<h3>"+e+"</h3>"+"<p>"+n+" at "+t+"</p>"},g,y,b={},w=null,E="No Data Available.",S=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),x=0;n.orient("bottom").tickPadding(7),r.orient(p?"right":"left");var T=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),a=n.tickFormat()(t.x()(i.point,i.pointIndex)),f=r.tickFormat()(t.y()(i.point,i.pointIndex)),l=m(i.series.key,a,f,i,N);e.tooltip.show([o,u],l,null,null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+o.left,e.pos[1]+o.top],S.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){S.tooltipHide(e)}),S.on("tooltipHide",function(){v&&e.tooltip.cleanup()}),N.dispatch=S,N.lines=t,N.legend=i,N.xAxis=n,N.yAxis=r,N.interactiveLayer=s,d3.rebind(N,t,"defined","isArea","x","y","size","xScale","yScale","xDomain","yDomain","xRange","yRange","forceX","forceY","interactive","clipEdge","clipVoronoi","useVoronoi","id","interpolate"),N.options=e.utils.optionsFunc.bind(N),N.margin=function(e){return arguments.length?(o.top=typeof e.top!="undefined"?e.top:o.top,o.right=typeof e.right!="undefined"?e.right:o.right,o.bottom=typeof e.bottom!="undefined"?e.bottom:o.bottom,o.left=typeof e.left!="undefined"?e.left:o.left,N):o},N.width=function(e){return arguments.length?(a=e,N):a},N.height=function(e){return arguments.length?(f=e,N):f},N.color=function(t){return arguments.length?(u=e.utils.getColor(t),i.color(u),N):u},N.showLegend=function(e){return arguments.length?(l=e,N):l},N.showXAxis=function(e){return arguments.length?(c=e,N):c},N.showYAxis=function(e){return arguments.length?(h=e,N):h},N.rightAlignYAxis=function(e){return arguments.length?(p=e,r.orient(e?"right":"left"),N):p},N.useInteractiveGuideline=function(e){return arguments.length?(d=e,e===!0&&(N.interactive(!1),N.useVoronoi(!1)),N):d},N.tooltips=function(e){return arguments.length?(v=e,N):v},N.tooltipContent=function(e){return arguments.length?(m=e,N):m},N.state=function(e){return arguments.length?(b=e,N):b},N.defaultState=function(e){return arguments.length?(w=e,N):w},N.noData=function(e){return arguments.length?(E=e,N):E},N.transitionDuration=function(e){return arguments.length?(x=e,N):x},N},e.models.linePlusBarChart=function(){function T(e){return e.each(function(e){var l=d3.select(this),c=this,v=(a||parseInt(l.style("width"))||960)-u.left-u.right,N=(f||parseInt(l.style("height"))||400)-u.top-u.bottom;T.update=function(){l.call(T)},b.disabled=e.map(function(e){return!!e.disabled});if(!w){var C;w={};for(C in b)b[C]instanceof Array?w[C]=b[C].slice(0):w[C]=b[C]}if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var k=l.selectAll(".nv-noData").data([E]);return k.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),k.attr("x",u.left+v/2).attr("y",u.top+N/2).text(function(e){return e}),T}l.selectAll(".nv-noData").remove();var L=e.filter(function(e){return!e.disabled&&e.bar}),A=e.filter(function(e){return!e.bar});m=A.filter(function(e){return!e.disabled}).length&&A.filter(function(e){return!e.disabled})[0].values.length?t.xScale():n.xScale(),g=n.yScale(),y=t.yScale();var O=d3.select(this).selectAll("g.nv-wrap.nv-linePlusBar").data([e]),M=O.enter().append("g").attr("class","nvd3 nv-wrap nv-linePlusBar").append("g"),_=O.select("g");M.append("g").attr("class","nv-x nv-axis"),M.append("g").attr("class","nv-y1 nv-axis"),M.append("g").attr("class","nv-y2 nv-axis"),M.append("g").attr("class","nv-barsWrap"),M.append("g").attr("class","nv-linesWrap"),M.append("g").attr("class","nv-legendWrap"),p&&(o.width(v/2),_.select(".nv-legendWrap").datum(e.map(function(e){return e.originalKey=e.originalKey===undefined?e.key:e.originalKey,e.key=e.originalKey+(e.bar?" (left axis)":" (right axis)"),e})).call(o),u.top!=o.height()&&(u.top=o.height(),N=(f||parseInt(l.style("height"))||400)-u.top-u.bottom),_.select(".nv-legendWrap").attr("transform","translate("+v/2+","+ -u.top+")")),O.attr("transform","translate("+u.left+","+u.top+")"),t.width(v).height(N).color(e.map(function(e,t){return e.color||h(e,t)}).filter(function(t,n){return!e[n].disabled&&!e[n].bar})),n.width(v).height(N).color(e.map(function(e,t){return e.color||h(e,t)}).filter(function(t,n){return!e[n].disabled&&e[n].bar}));var D=_.select(".nv-barsWrap").datum(L.length?L:[{values:[]}]),P=_.select(".nv-linesWrap").datum(A[0]&&!A[0].disabled?A:[{values:[]}]);d3.transition(D).call(n),d3.transition(P).call(t),r.scale(m).ticks(v/100).tickSize(-N,0),_.select(".nv-x.nv-axis").attr("transform","translate(0,"+g.range()[0]+")"),d3.transition(_.select(".nv-x.nv-axis")).call(r),i.scale(g).ticks(N/36).tickSize(-v,0),d3.transition(_.select(".nv-y1.nv-axis")).style("opacity",L.length?1:0).call(i),s.scale(y).ticks(N/36).tickSize(L.length?0:-v,0),_.select(".nv-y2.nv-axis").style("opacity",A.length?1:0).attr("transform","translate("+v+",0)"),d3.transition(_.select(".nv-y2.nv-axis")).call(s),o.dispatch.on("stateChange",function(e){b=e,S.stateChange(b),T.update()}),S.on("tooltipShow",function(e){d&&x(e,c.parentNode)}),S.on("changeState",function(t){typeof t.disabled!="undefined"&&(e.forEach(function(e,n){e.disabled=t.disabled[n]}),b.disabled=t.disabled),T.update()})}),T}var t=e.models.line(),n=e.models.historicalBar(),r=e.models.axis(),i=e.models.axis(),s=e.models.axis(),o=e.models.legend(),u={top:30,right:60,bottom:50,left:60},a=null,f=null,l=function(e){return e.x},c=function(e){return e.y},h=e.utils.defaultColor(),p=!0,d=!0,v=function(e,t,n,r,i){return"<h3>"+e+"</h3>"+"<p>"+n+" at "+t+"</p>"},m,g,y,b={},w=null,E="No Data Available.",S=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState");n.padData(!0),t.clipEdge(!1).padData(!0),r.orient("bottom").tickPadding(7).highlightZero(!1),i.orient("left"),s.orient("right");var x=function(n,o){var u=n.pos[0]+(o.offsetLeft||0),a=n.pos[1]+(o.offsetTop||0),f=r.tickFormat()(t.x()(n.point,n.pointIndex)),l=(n.series.bar?i:s).tickFormat()(t.y()(n.point,n.pointIndex)),c=v(n.series.key,f,l,n,T);e.tooltip.show([u,a],c,n.value<0?"n":"s",null,o)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+u.left,e.pos[1]+u.top],S.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){S.tooltipHide(e)}),n.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+u.left,e.pos[1]+u.top],S.tooltipShow(e)}),n.dispatch.on("elementMouseout.tooltip",function(e){S.tooltipHide(e)}),S.on("tooltipHide",function(){d&&e.tooltip.cleanup()}),T.dispatch=S,T.legend=o,T.lines=t,T.bars=n,T.xAxis=r,T.y1Axis=i,T.y2Axis=s,d3.rebind(T,t,"defined","size","clipVoronoi","interpolate"),T.options=e.utils.optionsFunc.bind(T),T.x=function(e){return arguments.length?(l=e,t.x(e),n.x(e),T):l},T.y=function(e){return arguments.length?(c=e,t.y(e),n.y(e),T):c},T.margin=function(e){return arguments.length?(u.top=typeof e.top!="undefined"?e.top:u.top,u.right=typeof e.right!="undefined"?e.right:u.right,u.bottom=typeof e.bottom!="undefined"?e.bottom:u.bottom,u.left=typeof e.left!="undefined"?e.left:u.left,T):u},T.width=function(e){return arguments.length?(a=e,T):a},T.height=function(e){return arguments.length?(f=e,T):f},T.color=function(t){return arguments.length?(h=e.utils.getColor(t),o.color(h),T):h},T.showLegend=function(e){return arguments.length?(p=e,T):p},T.tooltips=function(e){return arguments.length?(d=e,T):d},T.tooltipContent=function(e){return arguments.length?(v=e,T):v},T.state=function(e){return arguments.length?(b=e,T):b},T.defaultState=function(e){return arguments.length?(w=e,T):w},T.noData=function(e){return arguments.length?(E=e,T):E},T},e.models.lineWithFocusChart=function(){function k(e){return e.each(function(e){function R(e){var t=+(e=="e"),n=t?1:-1,r=O/3;return"M"+.5*n+","+r+"A6,6 0 0 "+t+" "+6.5*n+","+(r+6)+"V"+(2*r-6)+"A6,6 0 0 "+t+" "+.5*n+","+2*r+"Z"+"M"+2.5*n+","+(r+8)+"V"+(2*r-8)+"M"+4.5*n+","+(r+8)+"V"+(2*r-8)}function U(){a.empty()||a.extent(w),F.data([a.empty()?g.domain():w]).each(function(e,t){var n=g(e[0])-v.range()[0],r=v.range()[1]-g(e[1]);d3.select(this).select(".left").attr("width",n<0?0:n),d3.select(this).select(".right").attr("x",g(e[1])).attr("width",r<0?0:r)})}function z(){w=a.empty()?null:a.extent();var n=a.empty()?g.domain():a.extent();if(Math.abs(n[0]-n[1])<=1)return;T.brush({extent:n,brush:a}),U();var s=P.select(".nv-focus .nv-linesWrap").datum(e.filter(function(e){return!e.disabled}).map(function(e,r){return{key:e.key,values:e.values.filter(function(e,r){return t.x()(e,r)>=n[0]&&t.x()(e,r)<=n[1]})}}));s.call(t),P.select(".nv-focus .nv-x.nv-axis").call(r),P.select(".nv-focus .nv-y.nv-axis").call(i)}var S=d3.select(this),N=this,L=(h||parseInt(S.style("width"))||960)-f.left-f.right,A=(p||parseInt(S.style("height"))||400)-f.top-f.bottom-d,O=d-l.top-l.bottom;k.update=function(){S.call(k)},k.container=this;if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var M=S.selectAll(".nv-noData").data([x]);return M.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),M.attr("x",f.left+L/2).attr("y",f.top+A/2).text(function(e){return e}),k}S.selectAll(".nv-noData").remove(),v=t.xScale(),m=t.yScale(),g=n.xScale(),y=n.yScale();var _=S.selectAll("g.nv-wrap.nv-lineWithFocusChart").data([e]),D=_.enter().append("g").attr("class","nvd3 nv-wrap nv-lineWithFocusChart").append("g"),P=_.select("g");D.append("g").attr("class","nv-legendWrap");var H=D.append("g").attr("class","nv-focus");H.append("g").attr("class","nv-x nv-axis"),H.append("g").attr("class","nv-y nv-axis"),H.append("g").attr("class","nv-linesWrap");var B=D.append("g").attr("class","nv-context");B.append("g").attr("class","nv-x nv-axis"),B.append("g").attr("class","nv-y nv-axis"),B.append("g").attr("class","nv-linesWrap"),B.append("g").attr("class","nv-brushBackground"),B.append("g").attr("class","nv-x nv-brush"),b&&(u.width(L),P.select(".nv-legendWrap").datum(e).call(u),f.top!=u.height()&&(f.top=u.height(),A=(p||parseInt(S.style("height"))||400)-f.top-f.bottom-d),P.select(".nv-legendWrap").attr("transform","translate(0,"+ -f.top+")")),_.attr("transform","translate("+f.left+","+f.top+")"),t.width(L).height(A).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),n.defined(t.defined()).width(L).height(O).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),P.select(".nv-context").attr("transform","translate(0,"+(A+f.bottom+l.top)+")");var j=P.select(".nv-context .nv-linesWrap").datum(e.filter(function(e){return!e.disabled}));d3.transition(j).call(n),r.scale(v).ticks(L/100).tickSize(-A,0),i.scale(m).ticks(A/36).tickSize(-L,0),P.select(".nv-focus .nv-x.nv-axis").attr("transform","translate(0,"+A+")"),a.x(g).on("brush",function(){var e=k.transitionDuration();k.transitionDuration(0),z(),k.transitionDuration(e)}),w&&a.extent(w);var F=P.select(".nv-brushBackground").selectAll("g").data([w||a.extent()]),I=F.enter().append("g");I.append("rect").attr("class","left").attr("x",0).attr("y",0).attr("height",O),I.append("rect").attr("class","right").attr("x",0).attr("y",0).attr("height",O);var q=P.select(".nv-x.nv-brush").call(a);q.selectAll("rect").attr("height",O),q.selectAll(".resize").append("path").attr("d",R),z(),s.scale(g).ticks(L/100).tickSize(-O,0),P.select(".nv-context .nv-x.nv-axis").attr("transform","translate(0,"+y.range()[0]+")"),d3.transition(P.select(".nv-context .nv-x.nv-axis")).call(s),o.scale(y).ticks(O/36).tickSize(-L,0),d3.transition(P.select(".nv-context .nv-y.nv-axis")).call(o),P.select(".nv-context .nv-x.nv-axis").attr("transform","translate(0,"+y.range()[0]+")"),u.dispatch.on("stateChange",function(e){k.update()}),T.on("tooltipShow",function(e){E&&C(e,N.parentNode)})}),k}var t=e.models.line(),n=e.models.line(),r=e.models.axis(),i=e.models.axis(),s=e.models.axis(),o=e.models.axis(),u=e.models.legend(),a=d3.svg.brush(),f={top:30,right:30,bottom:30,left:60},l={top:0,right:30,bottom:20,left:60},c=e.utils.defaultColor(),h=null,p=null,d=100,v,m,g,y,b=!0,w=null,E=!0,S=function(e,t,n,r,i){return"<h3>"+e+"</h3>"+"<p>"+n+" at "+t+"</p>"},x="No Data Available.",T=d3.dispatch("tooltipShow","tooltipHide","brush"),N=0;t.clipEdge(!0),n.interactive(!1),r.orient("bottom").tickPadding(5),i.orient("left"),s.orient("bottom").tickPadding(5),o.orient("left");var C=function(n,s){var o=n.pos[0]+(s.offsetLeft||0),u=n.pos[1]+(s.offsetTop||0),a=r.tickFormat()(t.x()(n.point,n.pointIndex)),f=i.tickFormat()(t.y()(n.point,n.pointIndex)),l=S(n.series.key,a,f,n,k);e.tooltip.show([o,u],l,null,null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+f.left,e.pos[1]+f.top],T.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),T.on("tooltipHide",function(){E&&e.tooltip.cleanup()}),k.dispatch=T,k.legend=u,k.lines=t,k.lines2=n,k.xAxis=r,k.yAxis=i,k.x2Axis=s,k.y2Axis=o,d3.rebind(k,t,"defined","isArea","size","xDomain","yDomain","xRange","yRange","forceX","forceY","interactive","clipEdge","clipVoronoi","id"),k.options=e.utils.optionsFunc.bind(k),k.x=function(e){return arguments.length?(t.x(e),n.x(e),k):t.x},k.y=function(e){return arguments.length?(t.y(e),n.y(e),k):t.y},k.margin=function(e){return arguments.length?(f.top=typeof e.top!="undefined"?e.top:f.top,f.right=typeof e.right!="undefined"?e.right:f.right,f.bottom=typeof e.bottom!="undefined"?e.bottom:f.bottom,f.left=typeof e.left!="undefined"?e.left:f.left,k):f},k.margin2=function(e){return arguments.length?(l=e,k):l},k.width=function(e){return arguments.length?(h=e,k):h},k.height=function(e){return arguments.length?(p=e,k):p},k.height2=function(e){return arguments.length?(d=e,k):d},k.color=function(t){return arguments.length?(c=e.utils.getColor(t),u.color(c),k):c},k.showLegend=function(e){return arguments.length?(b=e,k):b},k.tooltips=function(e){return arguments.length?(E=e,k):E},k.tooltipContent=function(e){return arguments.length?(S=e,k):S},k.interpolate=function(e){return arguments.length?(t.interpolate(e),n.interpolate(e),k):t.interpolate()},k.noData=function(e){return arguments.length?(x=e,k):x},k.xTickFormat=function(e){return arguments.length?(r.tickFormat(e),s.tickFormat(e),k):r.tickFormat()},k.yTickFormat=function(e){return arguments.length?(i.tickFormat(e),o.tickFormat(e),k):i.tickFormat()},k.brushExtent=function(e){return arguments.length?(w=e,k):w},k.transitionDuration=function(e){return arguments.length?(N=e,k):N},k},e.models.linePlusBarWithFocusChart=function(){function B(e){return e.each(function(e){function tt(e){var t=+(e=="e"),n=t?1:-1,r=I/3;return"M"+.5*n+","+r+"A6,6 0 0 "+t+" "+6.5*n+","+(r+6)+"V"+(2*r-6)+"A6,6 0 0 "+t+" "+.5*n+","+2*r+"Z"+"M"+2.5*n+","+(r+8)+"V"+(2*r-8)+"M"+4.5*n+","+(r+8)+"V"+(2*r-8)}function nt(){h.empty()||h.extent(x),Y.data([h.empty()?k.domain():x]).each(function(e,t){var n=k(e[0])-k.range()[0],r=k.range()[1]-k(e[1]);d3.select(this).select(".left").attr("width",n<0?0:n),d3.select(this).select(".right").attr("x",k(e[1])).attr("width",r<0?0:r)})}function rt(){x=h.empty()?null:h.extent(),S=h.empty()?k.domain():h.extent(),D.brush({extent:S,brush:h}),nt(),r.width(j).height(F).color(e.map(function(e,t){return e.color||w(e,t)}).filter(function(t,n){return!e[n].disabled&&e[n].bar})),t.width(j).height(F).color(e.map(function(e,t){return e.color||w(e,t)}).filter(function(t,n){return!e[n].disabled&&!e[n].bar}));var n=$.select(".nv-focus .nv-barsWrap").datum(R.length?R.map(function(e,t){return{key:e.key,values:e.values.filter(function(e,t){return r.x()(e,t)>=S[0]&&r.x()(e,t)<=S[1]})}}):[{values:[]}]),i=$.select(".nv-focus .nv-linesWrap").datum(U[0].disabled?[{values:[]}]:U.map(function(e,n){return{key:e.key,values:e.values.filter(function(e,n){return t.x()(e,n)>=S[0]&&t.x()(e,n)<=S[1]})}}));R.length?C=r.xScale():C=t.xScale(),s.scale(C).ticks(j/100).tickSize(-F,0),s.domain([Math.ceil(S[0]),Math.floor(S[1])]),$.select(".nv-x.nv-axis").call(s),n.call(r),i.call(t),$.select(".nv-focus .nv-x.nv-axis").attr("transform","translate(0,"+L.range()[0]+")"),u.scale(L).ticks(F/36).tickSize(-j,0),$.select(".nv-focus .nv-y1.nv-axis").style("opacity",R.length?1:0),a.scale(A).ticks(F/36).tickSize(R.length?0:-j,0),$.select(".nv-focus .nv-y2.nv-axis").style("opacity",U.length?1:0).attr("transform","translate("+C.range()[1]+",0)"),$.select(".nv-focus .nv-y1.nv-axis").call(u),$.select(".nv-focus .nv-y2.nv-axis").call(a)}var N=d3.select(this),P=this,j=(v||parseInt(N.style("width"))||960)-p.left-p.right,F=(m||parseInt(N.style("height"))||400)-p.top-p.bottom-g,I=g-d.top-d.bottom;B.update=function(){N.call(B)},B.container=this;if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var q=N.selectAll(".nv-noData").data([_]);return q.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),q.attr("x",p.left+j/2).attr("y",p.top+F/2).text(function(e){return e}),B}N.selectAll(".nv-noData").remove();var R=e.filter(function(e){return!e.disabled&&e.bar}),U=e.filter(function(e){return!e.bar});C=r.xScale(),k=o.scale(),L=r.yScale(),A=t.yScale(),O=i.yScale(),M=n.yScale();var z=e.filter(function(e){return!e.disabled&&e.bar}).map(function(e){return e.values.map(function(e,t){return{x:y(e,t),y:b(e,t)}})}),W=e.filter(function(e){return!e.disabled&&!e.bar}).map(function(e){return e.values.map(function(e,t){return{x:y(e,t),y:b(e,t)}})});C.range([0,j]),k.domain(d3.extent(d3.merge(z.concat(W)),function(e){return e.x})).range([0,j]);var X=N.selectAll("g.nv-wrap.nv-linePlusBar").data([e]),V=X.enter().append("g").attr("class","nvd3 nv-wrap nv-linePlusBar").append("g"),$=X.select("g");V.append("g").attr("class","nv-legendWrap");var J=V.append("g").attr("class","nv-focus");J.append("g").attr("class","nv-x nv-axis"),J.append("g").attr("class","nv-y1 nv-axis"),J.append("g").attr("class","nv-y2 nv-axis"),J.append("g").attr("class","nv-barsWrap"),J.append("g").attr("class","nv-linesWrap");var K=V.append("g").attr("class","nv-context");K.append("g").attr("class","nv-x nv-axis"),K.append("g").attr("class","nv-y1 nv-axis"),K.append("g").attr("class","nv-y2 nv-axis"),K.append("g").attr("class","nv-barsWrap"),K.append("g").attr("class","nv-linesWrap"),K.append("g").attr("class","nv-brushBackground"),K.append("g").attr("class","nv-x nv-brush"),E&&(c.width(j/2),$.select(".nv-legendWrap").datum(e.map(function(e){return e.originalKey=e.originalKey===undefined?e.key:e.originalKey,e.key=e.originalKey+(e.bar?" (left axis)":" (right axis)"),e})).call(c),p.top!=c.height()&&(p.top=c.height(),F=(m||parseInt(N.style("height"))||400)-p.top-p.bottom-g),$.select(".nv-legendWrap").attr("transform","translate("+j/2+","+ -p.top+")")),X.attr("transform","translate("+p.left+","+p.top+")"),i.width(j).height(I).color(e.map(function(e,t){return e.color||w(e,t)}).filter(function(t,n){return!e[n].disabled&&e[n].bar})),n.width(j).height(I).color(e.map(function(e,t){return e.color||w(e,t)}).filter(function(t,n){return!e[n].disabled&&!e[n].bar}));var Q=$.select(".nv-context .nv-barsWrap").datum(R.length?R:[{values:[]}]),G=$.select(".nv-context .nv-linesWrap").datum(U[0].disabled?[{values:[]}]:U);$.select(".nv-context").attr("transform","translate(0,"+(F+p.bottom+d.top)+")"),Q.call(i),G.call(n),h.x(k).on("brush",rt),x&&h.extent(x);var Y=$.select(".nv-brushBackground").selectAll("g").data([x||h.extent()]),Z=Y.enter().append("g");Z.append("rect").attr("class","left").attr("x",0).attr("y",0).attr("height",I),Z.append("rect").attr("class","right").attr("x",0).attr("y",0).attr("height",I);var et=$.select(".nv-x.nv-brush").call(h);et.selectAll("rect").attr("height",I),et.selectAll(".resize").append("path").attr("d",tt),o.ticks(j/100).tickSize(-I,0),$.select(".nv-context .nv-x.nv-axis").attr("transform","translate(0,"+O.range()[0]+")"),$.select(".nv-context .nv-x.nv-axis").call(o),f.scale(O).ticks(I/36).tickSize(-j,0),$.select(".nv-context .nv-y1.nv-axis").style("opacity",R.length?1:0).attr("transform","translate(0,"+k.range()[0]+")"),$.select(".nv-context .nv-y1.nv-axis").call(f),l.scale(M).ticks(I/36).tickSize(R.length?0:-j,0),$.select(".nv-context .nv-y2.nv-axis").style("opacity",U.length?1:0).attr("transform","translate("+k.range()[1]+",0)"),$.select(".nv-context .nv-y2.nv-axis").call(l),c.dispatch.on("stateChange",function(e){B.update()}),D.on("tooltipShow",function(e){T&&H(e,P.parentNode)}),rt()}),B}var t=e.models.line(),n=e.models.line(),r=e.models.historicalBar(),i=e.models.historicalBar(),s=e.models.axis(),o=e.models.axis(),u=e.models.axis(),a=e.models.axis(),f=e.models.axis(),l=e.models.axis(),c=e.models.legend(),h=d3.svg.brush(),p={top:30,right:30,bottom:30,left:60},d={top:0,right:30,bottom:20,left:60},v=null,m=null,g=100,y=function(e){return e.x},b=function(e){return e.y},w=e.utils.defaultColor(),E=!0,S,x=null,T=!0,N=function(e,t,n,r,i){return"<h3>"+e+"</h3>"+"<p>"+n+" at "+t+"</p>"},C,k,L,A,O,M,_="No Data Available.",D=d3.dispatch("tooltipShow","tooltipHide","brush"),P=0;t.clipEdge(!0),n.interactive(!1),s.orient("bottom").tickPadding(5),u.orient("left"),a.orient("right"),o.orient("bottom").tickPadding(5),f.orient("left"),l.orient("right");var H=function(n,r){S&&(n.pointIndex+=Math.ceil(S[0]));var i=n.pos[0]+(r.offsetLeft||0),o=n.pos[1]+(r.offsetTop||0),f=s.tickFormat()(t.x()(n.point,n.pointIndex)),l=(n.series.bar?u:a).tickFormat()(t.y()(n.point,n.pointIndex)),c=N(n.series.key,f,l,n,B);e.tooltip.show([i,o],c,n.value<0?"n":"s",null,r)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+p.left,e.pos[1]+p.top],D.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){D.tooltipHide(e)}),r.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+p.left,e.pos[1]+p.top],D.tooltipShow(e)}),r.dispatch.on("elementMouseout.tooltip",function(e){D.tooltipHide(e)}),D.on("tooltipHide",function(){T&&e.tooltip.cleanup()}),B.dispatch=D,B.legend=c,B.lines=t,B.lines2=n,B.bars=r,B.bars2=i,B.xAxis=s,B.x2Axis=o,B.y1Axis=u,B.y2Axis=a,B.y3Axis=f,B.y4Axis=l,d3.rebind(B,t,"defined","size","clipVoronoi","interpolate"),B.options=e.utils.optionsFunc.bind(B),B.x=function(e){return arguments.length?(y=e,t.x(e),r.x(e),B):y},B.y=function(e){return arguments.length?(b=e,t.y(e),r.y(e),B):b},B.margin=function(e){return arguments.length?(p.top=typeof e.top!="undefined"?e.top:p.top,p.right=typeof e.right!="undefined"?e.right:p.right,p.bottom=typeof e.bottom!="undefined"?e.bottom:p.bottom,p.left=typeof e.left!="undefined"?e.left:p.left,B):p},B.width=function(e){return arguments.length?(v=e,B):v},B.height=function(e){return arguments.length?(m=e,B):m},B.color=function(t){return arguments.length?(w=e.utils.getColor(t),c.color(w),B):w},B.showLegend=function(e){return arguments.length?(E=e,B):E},B.tooltips=function(e){return arguments.length?(T=e,B):T},B.tooltipContent=function(e){return arguments.length?(N=e,B):N},B.noData=function(e){return arguments.length?(_=e,B):_},B.brushExtent=function(e){return arguments.length?(x=e,B):x},B},e.models.multiBar=function(){function C(e){return e.each(function(e){var g=n-t.left-t.right,C=r-t.top-t.bottom,k=d3.select(this);d&&e.length&&(d=[{values:e[0].values.map(function(e){return{x:e.x,y:0,series:e.series,size:.01}})}]),c&&(e=d3.layout.stack().offset(h).values(function(e){return e.values}).y(a)(!e.length&&d?d:e)),e.forEach(function(e,t){e.values.forEach(function(e){e.series=t})}),c&&e[0].values.map(function(t,n){var r=0,i=0;e.map(function(e){var t=e.values[n];t.size=Math.abs(t.y),t.y<0?(t.y1=i,i-=t.size):(t.y1=t.size+r,r+=t.size)})});var L=y&&b?[]:e.map(function(e){return e.values.map(function(e,t){return{x:u(e,t),y:a(e,t),y0:e.y0,y1:e.y1}})});i.domain(y||d3.merge(L).map(function(e){return e.x})).rangeBands(w||[0,g],S),s.domain(b||d3.extent(d3.merge(L).map(function(e){return c?e.y>0?e.y1:e.y1+e.y:e.y}).concat(f))).range(E||[C,0]),i.domain()[0]===i.domain()[1]&&(i.domain()[0]?i.domain([i.domain()[0]-i.domain()[0]*.01,i.domain()[1]+i.domain()[1]*.01]):i.domain([-1,1])),s.domain()[0]===s.domain()[1]&&(s.domain()[0]?s.domain([s.domain()[0]+s.domain()[0]*.01,s.domain()[1]-s.domain()[1]*.01]):s.domain([-1,1])),T=T||i,N=N||s;var A=k.selectAll("g.nv-wrap.nv-multibar").data([e]),O=A.enter().append("g").attr("class","nvd3 nv-wrap nv-multibar"),M=O.append("defs"),_=O.append("g"),D=A.select("g");_.append("g").attr("class","nv-groups"),A.attr("transform","translate("+t.left+","+t.top+")"),M.append("clipPath").attr("id","nv-edge-clip-"+o).append("rect"),A.select("#nv-edge-clip-"+o+" rect").attr("width",g).attr("height",C),D.attr("clip-path",l?"url(#nv-edge-clip-"+o+")":"");var P=A.select(".nv-groups").selectAll(".nv-group").data(function(e){return e},function(e,t){return t});P.enter().append("g").style("stroke-opacity",1e-6).style("fill-opacity",1e-6),P.exit().selectAll("rect.nv-bar").attr("y",function(e){return c?N(e.y0):N(0)}).attr("height",0).remove(),P.attr("class",function(e,t){return"nv-group nv-series-"+t}).classed("hover",function(e){return e.hover}).style("fill",function(e,t){return p(e,t)}).style("stroke",function(e,t){return p(e,t)}),P.style("stroke-opacity",1).style("fill-opacity",.75);var H=P.selectAll("rect.nv-bar").data(function(t){return d&&!e.length?d.values:t.values});H.exit().remove();var B=H.enter().append("rect").attr("class",function(e,t){return a(e,t)<0?"nv-bar negative":"nv-bar positive"}).attr("x",function(t,n,r){return c?0:r*i.rangeBand()/e.length}).attr("y",function(e){return N(c?e.y0:0)}).attr("height",0).attr("width",i.rangeBand()/(c?1:e.length)).attr("transform",function(e,t){return"translate("+i(u(e,t))+",0)"});H.style("fill",function(e,t,n){return p(e,n,t)}).style("stroke",function(e,t,n){return p(e,n,t)}).on("mouseover",function(t,n){d3.select(this).classed("hover",!0),x.elementMouseover({value:a(t,n),point:t,series:e[t.series],pos:[i(u(t,n))+i.rangeBand()*(c?e.length/2:t.series+.5)/e.length,s(a(t,n)+(c?t.y0:0))],pointIndex:n,seriesIndex:t.series,e:d3.event})}).on("mouseout",function(t,n){d3.select(this).classed("hover",!1),x.elementMouseout({value:a(t,n),point:t,series:e[t.series],pointIndex:n,seriesIndex:t.series,e:d3.event})}).on("click",function(t,n){x.elementClick({value:a(t,n),point:t,series:e[t.series],pos:[i(u(t,n))+i.rangeBand()*(c?e.length/2:t.series+.5)/e.length,s(a(t,n)+(c?t.y0:0))],pointIndex:n,seriesIndex:t.series,e:d3.event}),d3.event.stopPropagation()}).on("dblclick",function(t,n){x.elementDblClick({value:a(t,n),point:t,series:e[t.series],pos:[i(u(t,n))+i.rangeBand()*(c?e.length/2:t.series+.5)/e.length,s(a(t,n)+(c?t.y0:0))],pointIndex:n,seriesIndex:t.series,e:d3.event}),d3.event.stopPropagation()}),H.attr("class",function(e,t){return a(e,t)<0?"nv-bar negative":"nv-bar positive"}).attr("transform",function(e,t){return"translate("+i(u(e,t))+",0)"}),v&&(m||(m=e.map(function(){return!0})),H.style("fill",function(e,t,n){return d3.rgb(v(e,t)).darker(m.map(function(e,t){return t}).filter(function(e,t){return!m[t]})[n]).toString()}).style("stroke",function(e,t,n){return d3.rgb(v(e,t)).darker(m.map(function(e,t){return t}).filter(function(e,t){return!m[t]})[n]).toString()})),c?H.attr("y",function(e,t){return s(c?e.y1:0)}).attr("height",function(e,t){return Math.max(Math.abs(s(e.y+(c?e.y0:0))-s(c?e.y0:0)),1)}).attr("x",function(t,n){return c?0:t.series*i.rangeBand()/e.length}).attr("width",i.rangeBand()/(c?1:e.length)):H.attr("x",function(t,n){return t.series*i.rangeBand()/e.length}).attr("width",i.rangeBand()/e.length).attr("y",function(e,t){return a(e,t)<0?s(0):s(0)-s(a(e,t))<1?s(0)-1:s(a(e,t))||0}).attr("height",function(e,t){return Math.max(Math.abs(s(a(e,t))-s(0)),1)||0}),T=i.copy(),N=s.copy()}),C}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=d3.scale.ordinal(),s=d3.scale.linear(),o=Math.floor(Math.random()*1e4),u=function(e){return e.x},a=function(e){return e.y},f=[0],l=!0,c=!1,h="zero",p=e.utils.defaultColor(),d=!1,v=null,m,g=1200,y,b,w,E,S=.1,x=d3.dispatch("chartClick","elementClick","elementDblClick","elementMouseover","elementMouseout"),T,N;return C.dispatch=x,C.options=e.utils.optionsFunc.bind(C),C.x=function(e){return arguments.length?(u=e,C):u},C.y=function(e){return arguments.length?(a=e,C):a},C.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,C):t},C.width=function(e){return arguments.length?(n=e,C):n},C.height=function(e){return arguments.length?(r=e,C):r},C.xScale=function(e){return arguments.length?(i=e,C):i},C.yScale=function(e){return arguments.length?(s=e,C):s},C.xDomain=function(e){return arguments.length?(y=e,C):y},C.yDomain=function(e){return arguments.length?(b=e,C):b},C.xRange=function(e){return arguments.length?(w=e,C):w},C.yRange=function(e){return arguments.length?(E=e,C):E},C.forceY=function(e){return arguments.length?(f=e,C):f},C.stacked=function(e){return arguments.length?(c=e,C):c},C.stackOffset=function(e){return arguments.length?(h=e,C):h},C.clipEdge=function(e){return arguments.length?(l=e,C):l},C.color=function(t){return arguments.length?(p=e.utils.getColor(t),C):p},C.barColor=function(t){return arguments.length?(v=e.utils.getColor(t),C):v},C.disabled=function(e){return arguments.length?(m=e,C):m},C.id=function(e){return arguments.length?(o=e,C):o},C.hideable=function(e){return arguments.length?(d=e,C):d},C.delay=function(e){return arguments.length?(g=e,C):g},C.groupSpacing=function(e){return arguments.length?(S=e,C):S},C},e.models.multiBarChart=function(){function A(e){return e.each(function(e){var b=d3.select(this),k=this,O=(u||parseInt(b.style("width"))||960)-o.left-o.right,M=(a||parseInt(b.style("height"))||400)-o.top-o.bottom;A.update=function(){b.call(A)},A.container=this,S.disabled=e.map(function(e){return!!e.disabled});if(!x){var _;x={};for(_ in S)S[_]instanceof Array?x[_]=S[_].slice(0):x[_]=S[_]}if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var D=b.selectAll(".nv-noData").data([T]);return D.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),D.attr("x",o.left+O/2).attr("y",o.top+M/2).text(function(e){return e}),A}b.selectAll(".nv-noData").remove(),w=t.xScale(),E=t.yScale();var P=b.selectAll("g.nv-wrap.nv-multiBarWithLegend").data([e]),H=P.enter().append("g").attr("class","nvd3 nv-wrap nv-multiBarWithLegend").append("g"),B=P.select("g");H.append("g").attr("class","nv-x nv-axis"),H.append("g").attr("class","nv-y nv-axis"),H.append("g").attr("class","nv-barsWrap"),H.append("g").attr("class","nv-legendWrap"),H.append("g").attr("class","nv-controlsWrap"),c&&(i.width(O-C()),t.barColor()&&e.forEach(function(e,t){e.color=d3.rgb("#ccc").darker(t*1.5).toString()}),B.select(".nv-legendWrap").datum(e).call(i),o.top!=i.height()&&(o.top=i.height(),M=(a||parseInt(b.style("height"))||400)-o.top-o.bottom),B.select(".nv-legendWrap").attr("transform","translate("+C()+","+ -o.top+")"));if(l){var j=[{key:"Grouped",disabled:t.stacked()},{key:"Stacked",disabled:!t.stacked()}];s.width(C()).color(["#444","#444","#444"]),B.select(".nv-controlsWrap").datum(j).attr("transform","translate(0,"+ -o.top+")").call(s)}P.attr("transform","translate("+o.left+","+o.top+")"),d&&B.select(".nv-y.nv-axis").attr("transform","translate("+O+",0)"),t.disabled(e.map(function(e){return e.disabled})).width(O).height(M).color(e.map(function(e,t){return e.color||f(e,t)}).filter(function(t,n){return!e[n].disabled}));var F=B.select(".nv-barsWrap").datum(e.filter(function(e){return!e.disabled}));F.call(t);if(h){n.scale(w).ticks(O/100).tickSize(-M,0),B.select(".nv-x.nv-axis").attr("transform","translate(0,"+E.range()[0]+")"),B.select(".nv-x.nv-axis").call(n);var I=B.select(".nv-x.nv-axis > g").selectAll("g");I.selectAll("line, text").style("opacity",1);if(m){var q=function(e,t){return"translate("+e+","+t+")"},R=5,U=17;I.selectAll("text").attr("transform",function(e,t,n){return q(0,n%2==0?R:U)});var z=d3.selectAll(".nv-x.nv-axis .nv-wrap g g text")[0].length;B.selectAll(".nv-x.nv-axis .nv-axisMaxMin text").attr("transform",function(e,t){return q(0,t===0||z%2!==0?U:R)})}v&&I.filter(function(t,n){return n%Math.ceil(e[0].values.length/(O/100))!==0}).selectAll("text, line").style("opacity",0),g&&I.selectAll(".tick text").attr("transform","rotate("+g+" 0,0)").style("text-anchor",g>0?"start":"end"),B.select(".nv-x.nv-axis").selectAll("g.nv-axisMaxMin text").style("opacity",1)}p&&(r.scale(E).ticks(M/36).tickSize(-O,0),B.select(".nv-y.nv-axis").call(r)),i.dispatch.on("stateChange",function(e){S=e,N.stateChange(S),A.update()}),s.dispatch.on("legendClick",function(e,n){if(!e.disabled)return;j=j.map(function(e){return e.disabled=!0,e}),e.disabled=!1;switch(e.key){case"Grouped":t.stacked(!1);break;case"Stacked":t.stacked(!0)}S.stacked=t.stacked(),N.stateChange(S),A.update()}),N.on("tooltipShow",function(e){y&&L(e,k.parentNode)}),N.on("changeState",function(n){typeof n.disabled!="undefined"&&(e.forEach(function(e,t){e.disabled=n.disabled[t]}),S.disabled=n.disabled),typeof n.stacked!="undefined"&&(t.stacked(n.stacked),S.stacked=n.stacked),A.update()})}),A}var t=e.models.multiBar(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.models.legend(),o={top:30,right:20,bottom:50,left:60},u=null,a=null,f=e.utils.defaultColor(),l=!0,c=!0,h=!0,p=!0,d=!1,v=!0,m=!1,g=0,y=!0,b=function(e,t,n,r,i){return"<h3>"+e+"</h3>"+"<p>"+n+" on "+t+"</p>"},w,E,S={stacked:!1},x=null,T="No Data Available.",N=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),C=function(){return l?180:0},k=0;t.stacked(!1),n.orient("bottom").tickPadding(7).highlightZero(!0).showMaxMin(!1).tickFormat(function(e){return e}),r.orient(d?"right":"left").tickFormat(d3.format(",.1f")),s.updateState(!1);var L=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),a=n.tickFormat()(t.x()(i.point,i.pointIndex)),f=r.tickFormat()(t.y()(i.point,i.pointIndex)),l=b(i.series.key,a,f,i,A);e.tooltip.show([o,u],l,i.value<0?"n":"s",null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+o.left,e.pos[1]+o.top],N.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){N.tooltipHide(e)}),N.on("tooltipHide",function(){y&&e.tooltip.cleanup()}),A.dispatch=N,A.multibar=t,A.legend=i,A.xAxis=n,A.yAxis=r,d3.rebind(A,t,"x","y","xDomain","yDomain","xRange","yRange","forceX","forceY","clipEdge","id","stacked","stackOffset","delay","barColor","groupSpacing"),A.options=e.utils.optionsFunc.bind(A),A.margin=function(e){return arguments.length?(o.top=typeof e.top!="undefined"?e.top:o.top,o.right=typeof e.right!="undefined"?e.right:o.right,o.bottom=typeof e.bottom!="undefined"?e.bottom:o.bottom,o.left=typeof e.left!="undefined"?e.left:o.left,A):o},A.width=function(e){return arguments.length?(u=e,A):u},A.height=function(e){return arguments.length?(a=e,A):a},A.color=function(t){return arguments.length?(f=e.utils.getColor(t),i.color(f),A):f},A.showControls=function(e){return arguments.length?(l=e,A):l},A.showLegend=function(e){return arguments.length?(c=e,A):c},A.showXAxis=function(e){return arguments.length?(h=e,A):h},A.showYAxis=function(e){return arguments.length?(p=e,A):p},A.rightAlignYAxis=function(e){return arguments.length?(d=e,r.orient(e?"right":"left"),A):d},A.reduceXTicks=function(e){return arguments.length?(v=e,A):v},A.rotateLabels=function(e){return arguments.length?(g=e,A):g},A.staggerLabels=function(e){return arguments.length?(m=e,A):m},A.tooltip=function(e){return arguments.length?(b=e,A):b},A.tooltips=function(e){return arguments.length?(y=e,A):y},A.tooltipContent=function(e){return arguments.length?(b=e,A):b},A.state=function(e){return arguments.length?(S=e,A):S},A.defaultState=function(e){return arguments.length?(x=e,A):x},A.noData=function(e){return arguments.length?(T=e,A):T},A.transitionDuration=function(e){return arguments.length?(k=e,A):k},A},e.models.multiBarHorizontal=function(){function C(e){return e.each(function(e){var i=n-t.left-t.right,y=r-t.top-t.bottom,C=d3.select(this);p&&(e=d3.layout.stack().offset("zero").values(function(e){return e.values}).y(a)(e)),e.forEach(function(e,t){e.values.forEach(function(e){e.series=t})}),p&&e[0].values.map(function(t,n){var r=0,i=0;e.map(function(e){var t=e.values[n];t.size=Math.abs(t.y),t.y<0?(t.y1=i-t.size,i-=t.size):(t.y1=r,r+=t.size)})});var k=b&&w?[]:e.map(function(e){return e.values.map(function(e,t){return{x:u(e,t),y:a(e,t),y0:e.y0,y1:e.y1}})});s.domain(b||d3.merge(k).map(function(e){return e.x})).rangeBands(E||[0,y],.1),o.domain(w||d3.extent(d3.merge(k).map(function(e){return p?e.y>0?e.y1+e.y:e.y1:e.y}).concat(f))),d&&!p?o.range(S||[o.domain()[0]<0?m:0,i-(o.domain()[1]>0?m:0)]):o.range(S||[0,i]),T=T||s,N=N||d3.scale.linear().domain(o.domain()).range([o(0),o(0)]);var L=d3.select(this).selectAll("g.nv-wrap.nv-multibarHorizontal").data([e]),A=L.enter().append("g").attr("class","nvd3 nv-wrap nv-multibarHorizontal"),O=A.append("defs"),M=A.append("g"),_=L.select("g");M.append("g").attr("class","nv-groups"),L.attr("transform","translate("+t.left+","+t.top+")");var D=L.select(".nv-groups").selectAll(".nv-group").data(function(e){return e},function(e,t){return t});D.enter().append("g").style("stroke-opacity",1e-6).style("fill-opacity",1e-6),D.exit().style("stroke-opacity",1e-6).style("fill-opacity",1e-6).remove(),D.attr("class",function(e,t){return"nv-group nv-series-"+t}).classed("hover",function(e){return e.hover}).style("fill",function(e,t){return l(e,t)}).style("stroke",function(e,t){return l(e,t)}),D.style("stroke-opacity",1).style("fill-opacity",.75);var P=D.selectAll("g.nv-bar").data(function(e){return e.values});P.exit().remove();var H=P.enter().append("g").attr("transform",function(t,n,r){return"translate("+N(p?t.y0:0)+","+(p?0:r*s.rangeBand()/e.length+s(u(t,n)))+")"});H.append("rect").attr("width",0).attr("height",s.rangeBand()/(p?1:e.length)),P.on("mouseover",function(t,n){d3.select(this).classed("hover",!0),x.elementMouseover({value:a(t,n),point:t,series:e[t.series],pos:[o(a(t,n)+(p?t.y0:0)),s(u(t,n))+s.rangeBand()*(p?e.length/2:t.series+.5)/e.length],pointIndex:n,seriesIndex:t.series,e:d3.event})}).on("mouseout",function(t,n){d3.select(this).classed("hover",!1),x.elementMouseout({value:a(t,n),point:t,series:e[t.series],pointIndex:n,seriesIndex:t.series,e:d3.event})}).on("click",function(t,n){x.elementClick({value:a(t,n),point:t,series:e[t.series],pos:[s(u(t,n))+s.rangeBand()*(p?e.length/2:t.series+.5)/e.length,o(a(t,n)+(p?t.y0:0))],pointIndex:n,seriesIndex:t.series,e:d3.event}),d3.event.stopPropagation()}).on("dblclick",function(t,n){x.elementDblClick({value:a(t,n),point:t,series:e[t.series],pos:[s(u(t,n))+s.rangeBand()*(p?e.length/2:t.series+.5)/e.length,o(a(t,n)+(p?t.y0:0))],pointIndex:n,seriesIndex:t.series,e:d3.event}),d3.event.stopPropagation()}),H.append("text"),d&&!p?(P.select("text").attr("text-anchor",function(e,t){return a(e,t)<0?"end":"start"}).attr("y",s.rangeBand()/(e.length*2)).attr("dy",".32em").text(function(e,t){return g(a(e,t))}),P.select("text").attr("x",function(e,t){return a(e,t)<0?-4:o(a(e,t))-o(0)+4})):P.selectAll("text").text(""),v&&!p?(H.append("text").classed("nv-bar-label",!0),P.select("text.nv-bar-label").attr("text-anchor",function(e,t){return a(e,t)<0?"start":"end"}).attr("y",s.rangeBand()/(e.length*2)).attr("dy",".32em").text(function(e,t){return u(e,t)}),P.select("text.nv-bar-label").attr("x",function(e,t){return a(e,t)<0?o(0)-o(a(e,t))+4:-4})):P.selectAll("text.nv-bar-label").text(""),P.attr("class",function(e,t){return a(e,t)<0?"nv-bar negative":"nv-bar positive"}),c&&(h||(h=e.map(function(){return!0})),P.style("fill",function(e,t,n){return d3.rgb(c(e,t)).darker(h.map(function(e,t){return t}).filter(function(e,t){return!h[t]})[n]).toString()}).style("stroke",function(e,t,n){return d3.rgb(c(e,t)).darker(h.map(function(e,t){return t}).filter(function(e,t){return!h[t]})[n]).toString()})),p?P.attr("transform",function(e,t){return"translate("+o(e.y1)+","+s(u(e,t))+")"}).select("rect").attr("width",function(e,t){return Math.abs(o(a(e,t)+e.y0)-o(e.y0))}).attr("height",s.rangeBand()):P.attr("transform",function(t,n){return"translate("+(a(t,n)<0?o(a(t,n)):o(0))+","+(t.series*s.rangeBand()/e.length+s(u(t,n)))+")"}).select("rect").attr("height",s.rangeBand()/e.length).attr("width",function(e,t){return Math.max(Math.abs(o(a(e,t))-o(0)),1)}),T=s.copy(),N=o.copy()}),C}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=Math.floor(Math.random()*1e4),s=d3.scale.ordinal(),o=d3.scale.linear(),u=function(e){return e.x},a=function(e){return e.y},f=[0],l=e.utils.defaultColor(),c=null,h,p=!1,d=!1,v=!1,m=60,g=d3.format(",.2f"),y=1200,b,w,E,S,x=d3.dispatch("chartClick","elementClick","elementDblClick","elementMouseover","elementMouseout"),T,N;return C.dispatch=x,C.options=e.utils.optionsFunc.bind(C),C.x=function(e){return arguments.length?(u=e,C):u},C.y=function(e){return arguments.length?(a=e,C):a},C.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,C):t},C.width=function(e){return arguments.length?(n=e,C):n},C.height=function(e){return arguments.length?(r=e,C):r},C.xScale=function(e){return arguments.length?(s=e,C):s},C.yScale=function(e){return arguments.length?(o=e,C):o},C.xDomain=function(e){return arguments.length?(b=e,C):b},C.yDomain=function(e){return arguments.length?(w=e,C):w},C.xRange=function(e){return arguments.length?(E=e,C):E},C.yRange=function(e){return arguments.length?(S=e,C):S},C.forceY=function(e){return arguments.length?(f=e,C):f},C.stacked=function(e){return arguments.length?(p=e,C):p},C.color=function(t){return arguments.length?(l=e.utils.getColor(t),C):l},C.barColor=function(t){return arguments.length?(c=e.utils.getColor(t),C):c},C.disabled=function(e){return arguments.length?(h=e,C):h},C.id=function(e){return arguments.length?(i=e,C):i},C.delay=function(e){return arguments.length?(y=e,C):y},C.showValues=function(e){return arguments.length?(d=e,C):d},C.showBarLabels=function(e){return arguments.length?(v=e,C):v},C.valueFormat=function(e){return arguments.length?(g=e,C):g},C.valuePadding=function(e){return arguments.length?(m=e,C):m},C},e.models.multiBarHorizontalChart=function(){function C(e){return e.each(function(e){var d=d3.select(this),m=this,T=(u||parseInt(d.style("width"))||960)-o.left-o.right,k=(a||parseInt(d.style("height"))||400)-o.top-o.bottom;C.update=function(){d.call(C)},C.container=this,b.disabled=e.map(function(e){return!!e.disabled});if(!w){var L;w={};for(L in b)b[L]instanceof Array?w[L]=b[L].slice(0):w[L]=b[L]}if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var A=d.selectAll(".nv-noData").data([E]);return A.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),A.attr("x",o.left+T/2).attr("y",o.top+k/2).text(function(e){return e}),C}d.selectAll(".nv-noData").remove(),g=t.xScale(),y=t.yScale();var O=d.selectAll("g.nv-wrap.nv-multiBarHorizontalChart").data([e]),M=O.enter().append("g").attr("class","nvd3 nv-wrap nv-multiBarHorizontalChart").append("g"),_=O.select("g");M.append("g").attr("class","nv-x nv-axis"),M.append("g").attr("class","nv-y nv-axis").append("g").attr("class","nv-zeroLine").append("line"),M.append("g").attr("class","nv-barsWrap"),M.append("g").attr("class","nv-legendWrap"),M.append("g").attr("class","nv-controlsWrap"),c&&(i.width(T-x()),t.barColor()&&e.forEach(function(e,t){e.color=d3.rgb("#ccc").darker(t*1.5).toString()}),_.select(".nv-legendWrap").datum(e).call(i),o.top!=i.height()&&(o.top=i.height(),k=(a||parseInt(d.style("height"))||400)-o.top-o.bottom),_.select(".nv-legendWrap").attr("transform","translate("+x()+","+ -o.top+")"));if(l){var D=[{key:"Grouped",disabled:t.stacked()},{key:"Stacked",disabled:!t.stacked()}];s.width(x()).color(["#444","#444","#444"]),_.select(".nv-controlsWrap").datum(D).attr("transform","translate(0,"+ -o.top+")").call(s)}O.attr("transform","translate("+o.left+","+o.top+")"),t.disabled(e.map(function(e){return e.disabled})).width(T).height(k).color(e.map(function(e,t){return e.color||f(e,t)}).filter(function(t,n){return!e[n].disabled}));var P=_.select(".nv-barsWrap").datum(e.filter(function(e){return!e.disabled}));P.call(t);if(h){n.scale(g).ticks(k/24).tickSize(-T,0),_.select(".nv-x.nv-axis").call(n);var H=_.select(".nv-x.nv-axis").selectAll("g");H.selectAll("line, text")}p&&(r.scale(y).ticks(T/100).tickSize(-k,0),_.select(".nv-y.nv-axis").attr("transform","translate(0,"+k+")"),_.select(".nv-y.nv-axis").call(r)),_.select(".nv-zeroLine line").attr("x1",y(0)).attr("x2",y(0)).attr("y1",0).attr("y2",-k),i.dispatch.on("stateChange",function(e){b=e,S.stateChange(b),C.update()}),s.dispatch.on("legendClick",function(e,n){if(!e.disabled)return;D=D.map(function(e){return e.disabled=!0,e}),e.disabled=!1;switch(e.key){case"Grouped":t.stacked(!1);break;case"Stacked":t.stacked(!0)}b.stacked=t.stacked(),S.stateChange(b),C.update()}),S.on("tooltipShow",function(e){v&&N(e,m.parentNode)}),S.on("changeState",function(n){typeof n.disabled!="undefined"&&(e.forEach(function(e,t){e.disabled=n.disabled[t]}),b.disabled=n.disabled),typeof n.stacked!="undefined"&&(t.stacked(n.stacked),b.stacked=n.stacked),C.update()})}),C}var t=e.models.multiBarHorizontal(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend().height(30),s=e.models.legend().height(30),o={top:30,right:20,bottom:50,left:60},u=null,a=null,f=e.utils.defaultColor(),l=!0,c=!0,h=!0,p=!0,d=!1,v=!0,m=function(e,t,n,r,i){return"<h3>"+e+" - "+t+"</h3>"+"<p>"+n+"</p>"},g,y,b={stacked:d},w=null,E="No Data Available.",S=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),x=function(){return l?180:0},T=0;t.stacked(d),n.orient("left").tickPadding(5).highlightZero(!1).showMaxMin(!1).tickFormat(function(e){return e}),r.orient("bottom").tickFormat(d3.format(",.1f")),s.updateState(!1);var N=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),a=n.tickFormat()(t.x()(i.point,i.pointIndex)),f=r.tickFormat()(t.y()(i.point,i.pointIndex)),l=m(i.series.key,a,f,i,C);e.tooltip.show([o,u],l,i.value<0?"e":"w",null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+o.left,e.pos[1]+o.top],S.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){S.tooltipHide(e)}),S.on("tooltipHide",function(){v&&e.tooltip.cleanup()}),C.dispatch=S,C.multibar=t,C.legend=i,C.xAxis=n,C.yAxis=r,d3.rebind(C,t,"x","y","xDomain","yDomain","xRange","yRange","forceX","forceY","clipEdge","id","delay","showValues","showBarLabels","valueFormat","stacked","barColor"),C.options=e.utils.optionsFunc.bind(C),C.margin=function(e){return arguments.length?(o.top=typeof e.top!="undefined"?e.top:o.top,o.right=typeof e.right!="undefined"?e.right:o.right,o.bottom=typeof e.bottom!="undefined"?e.bottom:o.bottom,o.left=typeof e.left!="undefined"?e.left:o.left,C):o},C.width=function(e){return arguments.length?(u=e,C):u},C.height=function(e){return arguments.length?(a=e,C):a},C.color=function(t){return arguments.length?(f=e.utils.getColor(t),i.color(f),C):f},C.showControls=function(e){return arguments.length?(l=e,C):l},C.showLegend=function(e){return arguments.length?(c=e,C):c},C.showXAxis=function(e){return arguments.length?(h=e,C):h},C.showYAxis=function(e){return arguments.length?(p=e,C):p},C.tooltip=function(e){return arguments.length?(m=e,C):m},C.tooltips=function(e){return arguments.length?(v=e,C):v},C.tooltipContent=function(e){return arguments.length?(m=e,C):m},C.state=function(e){return arguments.length?(b=e,C):b},C.defaultState=function(e){return arguments.length?(w=e,C):w},C.noData=function(e){return arguments.length?(E=e,C):E},C.transitionDuration=function(e){return arguments.length?(T=e,C):T},C},e.models.multiChart=function(){function C(e){return e.each(function(e){var u=d3.select(this),f=this;C.update=function(){u.call(C)},C.container=this;var k=(r||parseInt(u.style("width"))||960)-t.left-t.right,L=(i||parseInt(u.style("height"))||400)-t.top-t.bottom,A=e.filter(function(e){return!e.disabled&&e.type=="line"&&e.yAxis==1}),O=e.filter(function(e){return!e.disabled&&e.type=="line"&&e.yAxis==2}),M=e.filter(function(e){return!e.disabled&&e.type=="bar"&&e.yAxis==1}),_=e.filter(function(e){return!e.disabled&&e.type=="bar"&&e.yAxis==2}),D=e.filter(function(e){return!e.disabled&&e.type=="area"&&e.yAxis==1}),P=e.filter(function(e){return!e.disabled&&e.type=="area"&&e.yAxis==2}),H=e.filter(function(e){return!e.disabled&&e.yAxis==1}).map(function(e){return e.values.map(function(e,t){return{x:e.x,y:e.y}})}),B=e.filter(function(e){return!e.disabled&&e.yAxis==2}).map(function(e){return e.values.map(function(e,t){return{x:e.x,y:e.y}})});a.domain(d3.extent(d3.merge(H.concat(B)),function(e){return e.x})).range([0,k]);var j=u.selectAll("g.wrap.multiChart").data([e]),F=j.enter().append("g").attr("class","wrap nvd3 multiChart").append("g");F.append("g").attr("class","x axis"),F.append("g").attr("class","y1 axis"),F.append("g").attr("class","y2 axis"),F.append("g").attr("class","lines1Wrap"),F.append("g").attr("class","lines2Wrap"),F.append("g").attr("class","bars1Wrap"),F.append("g").attr("class","bars2Wrap"),F.append("g").attr("class","stack1Wrap"),F.append("g").attr("class","stack2Wrap"),F.append("g").attr("class","legendWrap");var I=j.select("g");s&&(x.width(k/2),I.select(".legendWrap").datum(e.map(function(e){return e.originalKey=e.originalKey===undefined?e.key:e.originalKey,e.key=e.originalKey+(e.yAxis==1?"":" (right axis)"),e})).call(x),t.top!=x.height()&&(t.top=x.height(),L=(i||parseInt(u.style("height"))||400)-t.top-t.bottom),I.select(".legendWrap").attr("transform","translate("+k/2+","+ -t.top+")")),d.width(k).height(L).interpolate("monotone").color(e.map(function(e,t){return e.color||n[t%n.length]}).filter(function(t,n){return!e[n].disabled&&e[n].yAxis==1&&e[n].type=="line"})),v.width(k).height(L).interpolate("monotone").color(e.map(function(e,t){return e.color||n[t%n.length]}).filter(function(t,n){return!e[n].disabled&&e[n].yAxis==2&&e[n].type=="line"})),m.width(k).height(L).color(e.map(function(e,t){return e.color||n[t%n.length]}).filter(function(t,n){return!e[n].disabled&&e[n].yAxis==1&&e[n].type=="bar"})),g.width(k).height(L).color(e.map(function(e,t){return e.color||n[t%n.length]}).filter(function(t,n){return!e[n].disabled&&e[n].yAxis==2&&e[n].type=="bar"})),y.width(k).height(L).color(e.map(function(e,t){return e.color||n[t%n.length]}).filter(function(t,n){return!e[n].disabled&&e[n].yAxis==1&&e[n].type=="area"})),b.width(k).height(L).color(e.map(function(e,t){return e.color||n[t%n.length]}).filter(function(t,n){return!e[n].disabled&&e[n].yAxis==2&&e[n].type=="area"})),I.attr("transform","translate("+t.left+","+t.top+")");var q=I.select(".lines1Wrap").datum(A),R=I.select(".bars1Wrap").datum(M),U=I.select(".stack1Wrap").datum(D),z=I.select(".lines2Wrap").datum(O),W=I.select(".bars2Wrap").datum(_),X=I.select(".stack2Wrap").datum(P),V=D.length?D.map(function(e){return e.values}).reduce(function(e,t){return e.map(function(e,n){return{x:e.x,y:e.y+t[n].y}})}).concat([{x:0,y:0}]):[],$=P.length?P.map(function(e){return e.values}).reduce(function(e,t){return e.map(function(e,n){return{x:e.x,y:e.y+t[n].y}})}).concat([{x:0,y:0}]):[];h.domain(l||d3.extent(d3.merge(H).concat(V),function(e){return e.y})).range([0,L]),p.domain(c||d3.extent(d3.merge(B).concat($),function(e){return e.y})).range([0,L]),d.yDomain(h.domain()),m.yDomain(h.domain()),y.yDomain(h.domain()),v.yDomain(p.domain()),g.yDomain(p.domain()),b.yDomain(p.domain()),D.length&&d3.transition(U).call(y),P.length&&d3.transition(X).call(b),M.length&&d3.transition(R).call(m),_.length&&d3.transition(W).call(g),A.length&&d3.transition(q).call(d),O.length&&d3.transition(z).call(v),w.ticks(k/100).tickSize(-L,0),I.select(".x.axis").attr("transform","translate(0,"+L+")"),d3.transition(I.select(".x.axis")).call(w),E.ticks(L/36).tickSize(-k,0),d3.transition(I.select(".y1.axis")).call(E),S.ticks(L/36).tickSize(-k,0),d3.transition(I.select(".y2.axis")).call(S),I.select(".y2.axis").style("opacity",B.length?1:0).attr("transform","translate("+a.range()[1]+",0)"),x.dispatch.on("stateChange",function(e){C.update()}),T.on("tooltipShow",function(e){o&&N(e,f.parentNode)})}),C}var t={top:30,right:20,bottom:50,left:60},n=d3.scale.category20().range(),r=null,i=null,s=!0,o=!0,u=function(e,t,n,r,i){return"<h3>"+e+"</h3>"+"<p>"+n+" at "+t+"</p>"},a,f,l,c,a=d3.scale.linear(),h=d3.scale.linear(),p=d3.scale.linear(),d=e.models.line().yScale(h),v=e.models.line().yScale(p),m=e.models.multiBar().stacked(!1).yScale(h),g=e.models.multiBar().stacked(!1).yScale(p),y=e.models.stackedArea().yScale(h),b=e.models.stackedArea().yScale(p),w=e.models.axis().scale(a).orient("bottom").tickPadding(5),E=e.models.axis().scale(h).orient("left"),S=e.models.axis().scale(p).orient("right"),x=e.models.legend().height(30),T=d3.dispatch("tooltipShow","tooltipHide"),N=function(t,n){var r=t.pos[0]+(n.offsetLeft||0),i=t.pos[1]+(n.offsetTop||0),s=w.tickFormat()(d.x()(t.point,t.pointIndex)),o=(t.series.yAxis==2?S:E).tickFormat()(d.y()(t.point,t.pointIndex)),a=u(t.series.key,s,o,t,C);e.tooltip.show([r,i],a,undefined,undefined,n.offsetParent)};return d.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),d.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),v.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),v.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),m.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),m.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),g.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),g.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),y.dispatch.on("tooltipShow",function(e){if(!Math.round(y.y()(e.point)*100))return setTimeout(function(){d3.selectAll(".point.hover").classed("hover",!1)},0),!1;e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),y.dispatch.on("tooltipHide",function(e){T.tooltipHide(e)}),b.dispatch.on("tooltipShow",function(e){if(!Math.round(b.y()(e.point)*100))return setTimeout(function(){d3.selectAll(".point.hover").classed("hover",!1)},0),!1;e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),b.dispatch.on("tooltipHide",function(e){T.tooltipHide(e)}),d.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),d.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),v.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),v.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),T.on("tooltipHide",function(){o&&e.tooltip.cleanup()}),C.dispatch=T,C.lines1=d,C.lines2=v,C.bars1=m,C.bars2=g,C.stack1=y,C.stack2=b,C.xAxis=w,C.yAxis1=E,C.yAxis2=S,C.options=e.utils.optionsFunc.bind(C),C.x=function(e){return arguments.length?(getX=e,d.x(e),m.x(e),C):getX},C.y=function(e){return arguments.length?(getY=e,d.y(e),m.y(e),C):getY},C.yDomain1=function(e){return arguments.length?(l=e,C):l},C.yDomain2=function(e){return arguments.length?(c=e,C):c},C.margin=function(e){return arguments.length?(t=e,C):t},C.width=function(e){return arguments.length?(r=e,C):r},C.height=function(e){return arguments.length?(i=e,C):i},C.color=function(e){return arguments.length?(n=e,x.color(e),C):n},C.showLegend=function(e){return arguments.length?(s=e,C):s},C.tooltips=function(e){return arguments.length?(o=e,C):o},C.tooltipContent=function(e){return arguments.length?(u=e,C):u},C},e.models.ohlcBar=function(){function x(e){return e.each(function(e){var g=n-t.left-t.right,x=r-t.top-t.bottom,T=d3.select(this);s.domain(y||d3.extent(e[0].values.map(u).concat(p))),v?s.range(w||[g*.5/e[0].values.length,g*(e[0].values.length-.5)/e[0].values.length]):s.range(w||[0,g]),o.domain(b||[d3.min(e[0].values.map(h).concat(d)),d3.max(e[0].values.map(c).concat(d))]).range(E||[x,0]),s.domain()[0]===s.domain()[1]&&(s.domain()[0]?s.domain([s.domain()[0]-s.domain()[0]*.01,s.domain()[1]+s.domain()[1]*.01]):s.domain([-1,1])),o.domain()[0]===o.domain()[1]&&(o.domain()[0]?o.domain([o.domain()[0]+o.domain()[0]*.01,o.domain()[1]-o.domain()[1]*.01]):o.domain([-1,1]));var N=d3.select(this).selectAll("g.nv-wrap.nv-ohlcBar").data([e[0].values]),C=N.enter().append("g").attr("class","nvd3 nv-wrap nv-ohlcBar"),k=C.append("defs"),L=C.append("g"),A=N.select("g");L.append("g").attr("class","nv-ticks"),N.attr("transform","translate("+t.left+","+t.top+")"),T.on("click",function(e,t){S.chartClick({data:e,index:t,pos:d3.event,id:i})}),k.append("clipPath").attr("id","nv-chart-clip-path-"+i).append("rect"),N.select("#nv-chart-clip-path-"+i+" rect").attr("width",g).attr("height",x),A.attr("clip-path",m?"url(#nv-chart-clip-path-"+i+")":"");var O=N.select(".nv-ticks").selectAll(".nv-tick").data(function(e){return e});O.exit().remove();var M=O.enter().append("path").attr("class",function(e,t,n){return(f(e,t)>l(e,t)?"nv-tick negative":"nv-tick positive")+" nv-tick-"+n+"-"+t}).attr("d",function(t,n){var r=g/e[0].values.length*.9;return"m0,0l0,"+(o(f(t,n))-o(c(t,n)))+"l"+ -r/2+",0l"+r/2+",0l0,"+(o(h(t,n))-o(f(t,n)))+"l0,"+(o(l(t,n))-o(h(t,n)))+"l"+r/2+",0l"+ -r/2+",0z"}).attr("transform",function(e,t){return"translate("+s(u(e,t))+","+o(c(e,t))+")"}).on("mouseover",function(t,n){d3.select(this).classed("hover",!0),S.elementMouseover({point:t,series:e[0],pos:[s(u(t,n)),o(a(t,n))],pointIndex:n,seriesIndex:0,e:d3.event})}).on("mouseout",function(t,n){d3.select(this).classed("hover",!1),S.elementMouseout({point:t,series:e[0],pointIndex:n,seriesIndex:0,e:d3.event})}).on("click",function(e,t){S.elementClick({value:a(e,t),data:e,index:t,pos:[s(u(e,t)),o(a(e,t))],e:d3.event,id:i}),d3.event.stopPropagation()}).on("dblclick",function(e,t){S.elementDblClick({value:a(e,t),data:e,index:t,pos:[s(u(e,t)),o(a(e,t))],e:d3.event,id:i}),d3.event.stopPropagation()});O.attr("class",function(e,t,n){return(f(e,t)>l(e,t)?"nv-tick negative":"nv-tick positive")+" nv-tick-"+n+"-"+t}),d3.transition(O).attr("transform",function(e,t){return"translate("+s(u(e,t))+","+o(c(e,t))+")"}).attr("d",function(t,n){var r=g/e[0].values.length*.9;return"m0,0l0,"+(o(f(t,n))-o(c(t,n)))+"l"+ -r/2+",0l"+r/2+",0l0,"+(o(h(t,n))-o(f(t,n)))+"l0,"+(o(l(t,n))-o(h(t,n)))+"l"+r/2+",0l"+ -r/2+",0z"})}),x}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=Math.floor(Math.random()*1e4),s=d3.scale.linear(),o=d3.scale.linear(),u=function(e){return e.x},a=function(e){return e.y},f=function(e){return e.open},l=function(e){return e.close},c=function(e){return e.high},h=function(e){return e.low},p=[],d=[],v=!1,m=!0,g=e.utils.defaultColor(),y,b,w,E,S=d3.dispatch("chartClick","elementClick","elementDblClick","elementMouseover","elementMouseout");return x.dispatch=S,x.options=e.utils.optionsFunc.bind(x),x.x=function(e){return arguments.length?(u=e,x):u},x.y=function(e){return arguments.length?(a=e,x):a},x.open=function(e){return arguments.length?(f=e,x):f},x.close=function(e){return arguments.length?(l=e,x):l},x.high=function(e){return arguments.length?(c=e,x):c},x.low=function(e){return arguments.length?(h=e,x):h},x.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,x):t},x.width=function(e){return arguments.length?(n=e,x):n},x.height=function(e){return arguments.length?(r=e,x):r},x.xScale=function(e){return arguments.length?(s=e,x):s},x.yScale=function(e){return arguments.length?(o=e,x):o},x.xDomain=function(e){return arguments.length?(y=e,x):y},x.yDomain=function(e){return arguments.length?(b=e,x):b},x.xRange=function(e){return arguments.length?(w=e,x):w},x.yRange=function(e){return arguments.length?(E=e,x):E},x.forceX=function(e){return arguments.length?(p=e,x):p},x.forceY=function(e){return arguments.length?(d=e,x):d},x.padData=function(e){return arguments.length?(v=e,x):v},x.clipEdge=function(e){return arguments.length?(m=e,x):m},x.color=function(t){return arguments.length?(g=e.utils.getColor(t),x):g},x.id=function(e){return arguments.length?(i=e,x):i},x},e.models.pie=function(){function S(e){return e.each(function(e){function q(e){var t=(e.startAngle+e.endAngle)*90/Math.PI-90;return t>90?t-180:t}function R(e){e.endAngle=isNaN(e.endAngle)?0:e.endAngle,e.startAngle=isNaN(e.startAngle)?0:e.startAngle,m||(e.innerRadius=0);var t=d3.interpolate(this._current,e);return this._current=t(0),function(e){return A(t(e))}}function U(e){e.innerRadius=0;var t=d3.interpolate({startAngle:0,endAngle:0},e);return function(e){return A(t(e))}}var o=n-t.left-t.right,f=r-t.top-t.bottom,S=Math.min(o,f)/2,x=S-S/5,T=d3.select(this),N=T.selectAll(".nv-wrap.nv-pie").data(e),C=N.enter().append("g").attr("class","nvd3 nv-wrap nv-pie nv-chart-"+u),k=C.append("g"),L=N.select("g");k.append("g").attr("class","nv-pie"),k.append("g").attr("class","nv-pieLabels"),N.attr("transform","translate("+t.left+","+t.top+")"),L.select(".nv-pie").attr("transform","translate("+o/2+","+f/2+")"),L.select(".nv-pieLabels").attr("transform","translate("+o/2+","+f/2+")"),T.on("click",function(e,t){E.chartClick({data:e,index:t,pos:d3.event,id:u})});var A=d3.svg.arc().outerRadius(x);y&&A.startAngle(y),b&&A.endAngle(b),m&&A.innerRadius(S*w);var O=d3.layout.pie().sort(null).value(function(e){return e.disabled?0:s(e)}),M=N.select(".nv-pie").selectAll(".nv-slice").data(O),_=N.select(".nv-pieLabels").selectAll(".nv-label").data(O);M.exit().remove(),_.exit().remove();var D=M.enter().append("g").attr("class","nv-slice").on("mouseover",function(e,t){d3.select(this).classed("hover",!0),E.elementMouseover({label:i(e.data),value:s(e.data),point:e.data,pointIndex:t,pos:[d3.event.pageX,d3.event.pageY],id:u})}).on("mouseout",function(e,t){d3.select(this).classed("hover",!1),E.elementMouseout({label:i(e.data),value:s(e.data),point:e.data,index:t,id:u})}).on("click",function(e,t){E.elementClick({label:i(e.data),value:s(e.data),point:e.data,index:t,pos:d3.event,id:u}),d3.event.stopPropagation()}).on("dblclick",function(e,t){E.elementDblClick({label:i(e.data),value:s(e.data),point:e.data,index:t,pos:d3.event,id:u}),d3.event.stopPropagation()});M.attr("fill",function(e,t){return a(e,t)}).attr("stroke",function(e,t){return a(e,t)});var P=D.append("path").each(function(e){this._current=e});M.select("path").attr("d",A);if(l){var H=d3.svg.arc().innerRadius(0);c&&(H=A),h&&(H=d3.svg.arc().outerRadius(A.outerRadius())),_.enter().append("g").classed("nv-label",!0).each(function(e,t){var n=d3.select(this);n.attr("transform",function(e){if(g){e.outerRadius=x+10,e.innerRadius=x+15;var t=(e.startAngle+e.endAngle)/2*(180/Math.PI);return(e.startAngle+e.endAngle)/2<Math.PI?t-=90:t+=90,"translate("+H.centroid(e)+") rotate("+t+")"}return e.outerRadius=S+10,e.innerRadius=S+15,"translate("+H.centroid(e)+")"}),n.append("rect").style("stroke","#fff").style("fill","#fff").attr("rx",3).attr("ry",3),n.append("text").style("text-anchor",g?(e.startAngle+e.endAngle)/2<Math.PI?"start":"end":"middle").style("fill","#000")});var B={},j=14,F=140,I=function(e){return Math.floor(e[0]/F)*F+","+Math.floor(e[1]/j)*j};_.attr("transform",function(e){if(g){e.outerRadius=x+10,e.innerRadius=x+15;var t=(e.startAngle+e.endAngle)/2*(180/Math.PI);return(e.startAngle+e.endAngle)/2<Math.PI?t-=90:t+=90,"translate("+H.centroid(e)+") rotate("+t+")"}e.outerRadius=S+10,e.innerRadius=S+15;var n=H.centroid(e),r=I(n);return B[r]&&(n[1]-=j),B[I(n)]=!0,"translate("+n+")"}),_.select(".nv-label text").style("text-anchor",g?(d.startAngle+d.endAngle)/2<Math.PI?"start":"end":"middle").text(function(e,t){var n=(e.endAngle-e.startAngle)/(2*Math.PI),r={key:i(e.data),value:s(e.data),percent:d3.format("%")(n)};return e.value&&n>v?r[p]:""})}}),S}var t={top:0,right:0,bottom:0,left:0},n=500,r=500,i=function(e){return e.x},s=function(e){return e.y},o=function(e){return e.description},u=Math.floor(Math.random()*1e4),a=e.utils.defaultColor(),f=d3.format(",.2f"),l=!0,c=!0,h=!1,p="key",v=.02,m=!1,g=!1,y=!1,b=!1,w=.5,E=d3.dispatch("chartClick","elementClick","elementDblClick","elementMouseover","elementMouseout");return S.dispatch=E,S.options=e.utils.optionsFunc.bind(S),S.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,S):t},S.width=function(e){return arguments.length?(n=e,S):n},S.height=function(e){return arguments.length?(r=e,S):r},S.values=function(t){return e.log("pie.values() is no longer supported."),S},S.x=function(e){return arguments.length?(i=e,S):i},S.y=function(e){return arguments.length?(s=d3.functor(e),S):s},S.description=function(e){return arguments.length?(o=e,S):o},S.showLabels=function(e){return arguments.length?(l=e,S):l},S.labelSunbeamLayout=function(e){return arguments.length?(g=e,S):g},S.donutLabelsOutside=function(e){return arguments.length?(h=e,S):h},S.pieLabelsOutside=function(e){return arguments.length?(c=e,S):c},S.labelType=function(e){return arguments.length?(p=e,p=p||"key",S):p},S.donut=function(e){return arguments.length?(m=e,S):m},S.donutRatio=function(e){return arguments.length?(w=e,S):w},S.startAngle=function(e){return arguments.length?(y=e,S):y},S.endAngle=function(e){return arguments.length?(b=e,S):b},S.id=function(e){return arguments.length?(u=e,S):u},S.color=function(t){return arguments.length?(a=e.utils.getColor(t),S):a},S.valueFormat=function(e){return arguments.length?(f=e,S):f},S.labelThreshold=function(e){return arguments.length?(v=e,S):v},S},e.models.pieChart=function(){function v(e){return e.each(function(e){var u=d3.select(this),a=this,f=(i||parseInt(u.style("width"))||960)-r.left-r.right,d=(s||parseInt(u.style("height"))||400)-r.top-r.bottom;v.update=function(){u.call(v)},v.container=this,l.disabled=e.map(function(e){return!!e.disabled});if(!c){var m;c={};for(m in l)l[m]instanceof Array?c[m]=l[m].slice(0):c[m]=l[m]}if(!e||!e.length){var g=u.selectAll(".nv-noData").data([h]);return g.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),g.attr("x",r.left+f/2).attr("y",r.top+d/2).text(function(e){return e}),v}u.selectAll(".nv-noData").remove();var y=u.selectAll("g.nv-wrap.nv-pieChart").data([e]),b=y.enter().append("g").attr("class","nvd3 nv-wrap nv-pieChart").append("g"),w=y.select("g");b.append("g").attr("class","nv-pieWrap"),b.append("g").attr("class","nv-legendWrap"),o&&(n.width(f).key(t.x()),y.select(".nv-legendWrap").datum(e).call(n),r.top!=n.height()&&(r.top=n.height(),d=(s||parseInt(u.style("height"))||400)-r.top-r.bottom),y.select(".nv-legendWrap").attr("transform","translate(0,"+ -r.top+")")),y.attr("transform","translate("+r.left+","+r.top+")"),t.width(f).height(d);var E=w.select(".nv-pieWrap").datum([e]);d3.transition(E).call(t),n.dispatch.on("stateChange",function(e){l=e,p.stateChange(l),v.update()}),t.dispatch.on("elementMouseout.tooltip",function(e){p.tooltipHide(e)}),p.on("changeState",function(t){typeof t.disabled!="undefined"&&(e.forEach(function(e,n){e.disabled=t.disabled[n]}),l.disabled=t.disabled),v.update()})}),v}var t=e.models.pie(),n=e.models.legend(),r={top:30,right:20,bottom:20,left:20},i=null,s=null,o=!0,u=e.utils.defaultColor(),a=!0,f=function(e,t,n,r){return"<h3>"+e+"</h3>"+"<p>"+t+"</p>"},l={},c=null,h="No Data Available.",p=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),d=function(n,r){var i=t.description()(n.point)||t.x()(n.point),s=n.pos[0]+(r&&r.offsetLeft||0),o=n.pos[1]+(r&&r.offsetTop||0),u=t.valueFormat()(t.y()(n.point)),a=f(i,u,n,v);e.tooltip.show([s,o],a,n.value<0?"n":"s",null,r)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+r.left,e.pos[1]+r.top],p.tooltipShow(e)}),p.on("tooltipShow",function(e){a&&d(e)}),p.on("tooltipHide",function(){a&&e.tooltip.cleanup()}),v.legend=n,v.dispatch=p,v.pie=t,d3.rebind(v,t,"valueFormat","values","x","y","description","id","showLabels","donutLabelsOutside","pieLabelsOutside","labelType","donut","donutRatio","labelThreshold"),v.options=e.utils.optionsFunc.bind(v),v.margin=function(e){return arguments.length?(r.top=typeof e.top!="undefined"?e.top:r.top,r.right=typeof e.right!="undefined"?e.right:r.right,r.bottom=typeof e.bottom!="undefined"?e.bottom:r.bottom,r.left=typeof e.left!="undefined"?e.left:r.left,v):r},v.width=function(e){return arguments.length?(i=e,v):i},v.height=function(e){return arguments.length?(s=e,v):s},v.color=function(r){return arguments.length?(u=e.utils.getColor(r),n.color(u),t.color(u),v):u},v.showLegend=function(e){return arguments.length?(o=e,v):o},v.tooltips=function(e){return arguments.length?(a=e,v):a},v.tooltipContent=function(e){return arguments.length?(f=e,v):f},v.state=function(e){return arguments.length?(l=e,v):l},v.defaultState=function(e){return arguments.length?(c=e,v):c},v.noData=function(e){return arguments.length?(h=e,v):h},v},e.models.scatter=function(){function I(q){return q.each(function(I){function Q(){if(!g)return!1;var e,i=d3.merge(I.map(function(e,t){return e.values.map(function(e,n){var r=f(e,n),i=l(e,n);return[o(r),u(i),t,n,e]}).filter(function(e,t){return b(e[4],t)})}));if(D===!0){if(x){var a=X.select("defs").selectAll(".nv-point-clips").data([s]).enter();a.append("clipPath").attr("class","nv-point-clips").attr("id","nv-points-clip-"+s);var c=X.select("#nv-points-clip-"+s).selectAll("circle").data(i);c.enter().append("circle").attr("r",T),c.exit().remove(),c.attr("cx",function(e){return e[0]}).attr("cy",function(e){return e[1]}),X.select(".nv-point-paths").attr("clip-path","url(#nv-points-clip-"+s+")")}i.length&&(i.push([o.range()[0]-20,u.range()[0]-20,null,null]),i.push([o.range()[1]+20,u.range()[1]+20,null,null]),i.push([o.range()[0]-20,u.range()[0]+20,null,null]),i.push([o.range()[1]+20,u.range()[1]-20,null,null]));var h=d3.geom.polygon([[-10,-10],[-10,r+10],[n+10,r+10],[n+10,-10]]),p=1e-6;i=i.sort(function(e,t){return e[0]-t[0]||e[1]-t[1]});for(var d=0;d<i.length-1;)Math.abs(i[d][0]-i[d+1][0])<p&&Math.abs(i[d][1]-i[d+1][1])<p?i.splice(d+1,1):d++;var v=d3.geom.voronoi(i).map(function(e,t){return{data:h.clip(e),series:i[t][2],point:i[t][3]}}),m=X.select(".nv-point-paths").selectAll("path").data(v);m.enter().append("path").attr("class",function(e,t){return"nv-path-"+t}),m.exit().remove(),m.attr("d",function(e){return!e||!e.data||e.data.length===0?"M 0 0":"M"+e.data.join("L")+"Z"});var y=function(e,n){if(F)return 0;var r=I[e.series];if(typeof r=="undefined")return;var i=r.values[e.point];n({point:i,series:r,pos:[o(f(i,e.point))+t.left,u(l(i,e.point))+t.top],seriesIndex:e.series,pointIndex:e.point})};m.on("click",function(e){y(e,_.elementClick)}).on("mouseover",function(e){y(e,_.elementMouseover)}).on("mouseout",function(e,t){y(e,_.elementMouseout)})}else X.select(".nv-groups").selectAll(".nv-group").selectAll(".nv-point").on("click",function(e,n){if(F||!I[e.series])return 0;var r=I[e.series],i=r.values[n];_.elementClick({point:i,series:r,pos:[o(f(i,n))+t.left,u(l(i,n))+t.top],seriesIndex:e.series,pointIndex:n})}).on("mouseover",function(e,n){if(F||!I[e.series])return 0;var r=I[e.series],i=r.values[n];_.elementMouseover({point:i,series:r,pos:[o(f(i,n))+t.left,u(l(i,n))+t.top],seriesIndex:e.series,pointIndex:n})}).on("mouseout",function(e,t){if(F||!I[e.series])return 0;var n=I[e.series],r=n.values[t];_.elementMouseout({point:r,series:n,seriesIndex:e.series,pointIndex:t})});F=!1}var q=n-t.left-t.right,R=r-t.top-t.bottom,U=d3.select(this);I.forEach(function(e,t){e.values.forEach(function(e){e.series=t})});var W=N&&C&&A?[]:d3.merge(I.map(function(e){return e.values.map(function(e,t){return{x:f(e,t),y:l(e,t),size:c(e,t)}})}));o.domain(N||d3.extent(W.map(function(e){return e.x}).concat(d))),w&&I[0]?o.range(k||[(q*E+q)/(2*I[0].values.length),q-q*(1+E)/(2*I[0].values.length)]):o.range(k||[0,q]),u.domain(C||d3.extent(W.map(function(e){return e.y}).concat(v))).range(L||[R,0]),a.domain(A||d3.extent(W.map(function(e){return e.size}).concat(m))).range(O||[16,256]);if(o.domain()[0]===o.domain()[1]||u.domain()[0]===u.domain()[1])M=!0;o.domain()[0]===o.domain()[1]&&(o.domain()[0]?o.domain([o.domain()[0]-o.domain()[0]*.01,o.domain()[1]+o.domain()[1]*.01]):o.domain([-1,1])),u.domain()[0]===u.domain()[1]&&(u.domain()[0]?u.domain([u.domain()[0]-u.domain()[0]*.01,u.domain()[1]+u.domain()[1]*.01]):u.domain([-1,1])),isNaN(o.domain()[0])&&o.domain([-1,1]),isNaN(u.domain()[0])&&u.domain([-1,1]),P=P||o,H=H||u,B=B||a;var X=U.selectAll("g.nv-wrap.nv-scatter").data([I]),V=X.enter().append("g").attr("class","nvd3 nv-wrap nv-scatter nv-chart-"+s+(M?" nv-single-point":"")),$=V.append("defs"),J=V.append("g"),K=X.select("g");J.append("g").attr("class","nv-groups"),J.append("g").attr("class","nv-point-paths"),X.attr("transform","translate("+t.left+","+t.top+")"),$.append("clipPath").attr("id","nv-edge-clip-"+s).append("rect"),X.select("#nv-edge-clip-"+s+" rect").attr("width",q).attr("height",R>0?R:0),K.attr("clip-path",S?"url(#nv-edge-clip-"+s+")":""),F=!0;var G=X.select(".nv-groups").selectAll(".nv-group").data(function(e){return e},function(e){return e.key});G.enter().append("g").style("stroke-opacity",1e-6).style("fill-opacity",1e-6),G.exit().remove(),G.attr("class",function(e,t){return"nv-group nv-series-"+t}).classed("hover",function(e){return e.hover}),G.style("fill",function(e,t){return i(e,t)}).style("stroke",function(e,t){return i(e,t)}).style("stroke-opacity",1).style("fill-opacity",.5);if(p){var Y=G.selectAll("circle.nv-point").data(function(e){return e.values},y);Y.enter().append("circle").style("fill",function(e,t){return e.color}).style("stroke",function(e,t){return e.color}).attr("cx",function(t,n){return e.utils.NaNtoZero(P(f(t,n)))}).attr("cy",function(t,n){return e.utils.NaNtoZero(H(l(t,n)))}).attr("r",function(e,t){return Math.sqrt(a(c(e,t))/Math.PI)}),Y.exit().remove(),G.exit().selectAll("path.nv-point").attr("cx",function(t,n){return e.utils.NaNtoZero(o(f(t,n)))}).attr("cy",function(t,n){return e.utils.NaNtoZero(u(l(t,n)))}).remove(),Y.each(function(e,t){d3.select(this).classed("nv-point",!0).classed("nv-point-"+t,!0).classed("hover",!1)}),Y.attr("cx",function(t,n){return e.utils.NaNtoZero(o(f(t,n)))}).attr("cy",function(t,n){return e.utils.NaNtoZero(u(l(t,n)))}).attr("r",function(e,t){return Math.sqrt(a(c(e,t))/Math.PI)})}else{var Y=G.selectAll("path.nv-point").data(function(e){return e.values});Y.enter().append("path").style("fill",function(e,t){return e.color}).style("stroke",function(e,t){return e.color}).attr("transform",function(e,t){return"translate("+P(f(e,t))+","+H(l(e,t))+")"}).attr("d",d3.svg.symbol().type(h).size(function(e,t){return a(c(e,t))})),Y.exit().remove(),G.exit().selectAll("path.nv-point").attr("transform",function(e,t){return"translate("+o(f(e,t))+","+u(l(e,t))+")"}).remove(),Y.each(function(e,t){d3.select(this).classed("nv-point",!0).classed("nv-point-"+t,!0).classed("hover",!1)}),Y.attr("transform",function(e,t){return"translate("+o(f(e,t))+","+u(l(e,t))+")"}).attr("d",d3.svg.symbol().type(h).size(function(e,t){return a(c(e,t))}))}clearTimeout(j),j=setTimeout(Q,300),P=o.copy(),H=u.copy(),B=a.copy()}),I}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=e.utils.defaultColor(),s=Math.floor(Math.random()*1e5),o=d3.scale.linear(),u=d3.scale.linear(),a=d3.scale.linear(),f=function(e){return e.x},l=function(e){return e.y},c=function(e){return e.size||1},h=function(e){return e.shape||"circle"},p=!0,d=[],v=[],m=[],g=!0,y=null,b=function(e){return!e.notActive},w=!1,E=.1,S=!1,x=!0,T=function(){return 25},N=null,C=null,k=null,L=null,A=null,O=null,M=!1,_=d3.dispatch("elementClick","elementMouseover","elementMouseout"),D=!0,P,H,B,j,F=!1;return I.clearHighlights=function(){d3.selectAll(".nv-chart-"+s+" .nv-point.hover").classed("hover",!1)},I.highlightPoint=function(e,t,n){d3.select(".nv-chart-"+s+" .nv-series-"+e+" .nv-point-"+t).classed("hover",n)},_.on("elementMouseover.point",function(e){g&&I.highlightPoint(e.seriesIndex,e.pointIndex,!0)}),_.on("elementMouseout.point",function(e){g&&I.highlightPoint(e.seriesIndex,e.pointIndex,!1)}),I.dispatch=_,I.options=e.utils.optionsFunc.bind(I),I.x=function(e){return arguments.length?(f=d3.functor(e),I):f},I.y=function(e){return arguments.length?(l=d3.functor(e),I):l},I.size=function(e){return arguments.length?(c=d3.functor(e),I):c},I.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,I):t},I.width=function(e){return arguments.length?(n=e,I):n},I.height=function(e){return arguments.length?(r=e,I):r},I.xScale=function(e){return arguments.length?(o=e,I):o},I.yScale=function(e){return arguments.length?(u=e,I):u},I.zScale=function(e){return arguments.length?(a=e,I):a},I.xDomain=function(e){return arguments.length?(N=e,I):N},I.yDomain=function(e){return arguments.length?(C=e,I):C},I.sizeDomain=function(e){return arguments.length?(A=e,I):A},I.xRange=function(e){return arguments.length?(k=e,I):k},I.yRange=function(e){return arguments.length?(L=e,I):L},I.sizeRange=function(e){return arguments.length?(O=e,I):O},I.forceX=function(e){return arguments.length?(d=e,I):d},I.forceY=function(e){return arguments.length?(v=e,I):v},I.forceSize=function(e){return arguments.length?(m=e,I):m},I.interactive=function(e){return arguments.length?(g=e,I):g},I.pointKey=function(e){return arguments.length?(y=e,I):y},I.pointActive=function(e){return arguments.length?(b=e,I):b},I.padData=function(e){return arguments.length?(w=e,I):w},I.padDataOuter=function(e){return arguments.length?(E=e,I):E},I.clipEdge=function(e){return arguments.length?(S=e,I):S},I.clipVoronoi=function(e){return arguments.length?(x=e,I):x},I.useVoronoi=function(e){return arguments.length?(D=e,D===!1&&(x=!1),I):D},I.clipRadius=function(e){return arguments.length?(T=e,I):T},I.color=function(t){return arguments.length?(i=e.utils.getColor(t),I):i},I.shape=function(e){return arguments.length?(h=e,I):h},I.onlyCircles=function(e){return arguments.length?(p=e,I):p},I.id=function(e){return arguments.length?(s=e,I):s},I.singlePoint=function(e){return arguments.length?(M=e,I):M},I},e.models.scatterChart=function(){function F(e){return e.each(function(e){function J(){if(T)return W.select(".nv-point-paths").style("pointer-events","all"),!1;W.select(".nv-point-paths").style("pointer-events","none");var i=d3.mouse(this);h.distortion(x).focus(i[0]),p.distortion(x).focus(i[1]),W.select(".nv-scatterWrap").call(t),b&&W.select(".nv-x.nv-axis").call(n),w&&W.select(".nv-y.nv-axis").call(r),W.select(".nv-distributionX").datum(e.filter(function(e){return!e.disabled})).call(o),W.select(".nv-distributionY").datum(e.filter(function(e){return!e.disabled})).call(u)}var C=d3.select(this),k=this,L=(f||parseInt(C.style("width"))||960)-a.left-a.right,D=(l||parseInt(C.style("height"))||400)-a.top-a.bottom;F.update=function(){C.call(F)},F.container=this,A.disabled=e.map(function(e){return!!e.disabled});if(!O){var I;O={};for(I in A)A[I]instanceof Array?O[I]=A[I].slice(0):O[I]=A[I]}if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var q=C.selectAll(".nv-noData").data([_]);return q.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),q.attr("x",a.left+L/2).attr("y",a.top+D/2).text(function(e){return e}),F}C.selectAll(".nv-noData").remove(),P=P||h,H=H||p;var R=C.selectAll("g.nv-wrap.nv-scatterChart").data([e]),U=R.enter().append("g").attr("class","nvd3 nv-wrap nv-scatterChart nv-chart-"+t.id()),z=U.append("g"),W=R.select("g");z.append("rect").attr("class","nvd3 nv-background"),z.append("g").attr("class","nv-x nv-axis"),z.append("g").attr("class","nv-y nv-axis"),z.append("g").attr("class","nv-scatterWrap"),z.append("g").attr("class","nv-distWrap"),z.append("g").attr("class","nv-legendWrap"),z.append("g").attr("class","nv-controlsWrap");if(y){var X=S?L/2:L;i.width(X),R.select(".nv-legendWrap").datum(e).call(i),a.top!=i.height()&&(a.top=i.height(),D=(l||parseInt(C.style("height"))||400)-a.top-a.bottom),R.select(".nv-legendWrap").attr("transform","translate("+(L-X)+","+ -a.top+")")}S&&(s.width(180).color(["#444"]),W.select(".nv-controlsWrap").datum(j).attr("transform","translate(0,"+ -a.top+")").call(s)),R.attr("transform","translate("+a.left+","+a.top+")"),E&&W.select(".nv-y.nv-axis").attr("transform","translate("+L+",0)"),t.width(L).height(D).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),d!==0&&t.xDomain(null),v!==0&&t.yDomain(null),R.select(".nv-scatterWrap").datum(e.filter(function(e){return!e.disabled})).call(t);if(d!==0){var V=h.domain()[1]-h.domain()[0];t.xDomain([h.domain()[0]-d*V,h.domain()[1]+d*V])}if(v!==0){var $=p.domain()[1]-p.domain()[0];t.yDomain([p.domain()[0]-v*$,p.domain()[1]+v*$])}(v!==0||d!==0)&&R.select(".nv-scatterWrap").datum(e.filter(function(e){return!e.disabled})).call(t),b&&(n.scale(h).ticks(n.ticks()&&n.ticks().length?n.ticks():L/100).tickSize(-D,0),W.select(".nv-x.nv-axis").attr("transform","translate(0,"+p.range()[0]+")").call(n)),w&&(r.scale(p).ticks(r.ticks()&&r.ticks().length?r.ticks():D/36).tickSize(-L,0),W.select(".nv-y.nv-axis").call(r)),m&&(o.getData(t.x()).scale(h).width(L).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),z.select(".nv-distWrap").append("g").attr("class","nv-distributionX"),W.select(".nv-distributionX").attr("transform","translate(0,"+p.range()[0]+")").datum(e.filter(function(e){return!e.disabled})).call(o)),g&&(u.getData(t.y()).scale(p).width(D).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),z.select(".nv-distWrap").append("g").attr("class","nv-distributionY"),W.select(".nv-distributionY").attr("transform","translate("+(E?L:-u.size())+",0)").datum(e.filter(function(e){return!e.disabled})).call(u)),d3.fisheye&&(W.select(".nv-background").attr("width",L).attr("height",D),W.select(".nv-background").on("mousemove",J),W.select(".nv-background").on("click",function(){T=!T}),t.dispatch.on("elementClick.freezeFisheye",function(){T=!T})),s.dispatch.on("legendClick",function(e,i){e.disabled=!e.disabled,x=e.disabled?0:2.5,W.select(".nv-background").style("pointer-events",e.disabled?"none":"all"),W.select(".nv-point-paths").style("pointer-events",e.disabled?"all":"none"),e.disabled?(h.distortion(x).focus(0),p.distortion(x).focus(0),W.select(".nv-scatterWrap").call(t),W.select(".nv-x.nv-axis").call(n),W.select(".nv-y.nv-axis").call(r)):T=!1,F.update()}),i.dispatch.on("stateChange",function(e){A.disabled=e.disabled,M.stateChange(A),F.update()}),t.dispatch.on("elementMouseover.tooltip",function(e){d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-distx-"+e.pointIndex).attr("y1",function(t,n){return e.pos[1]-D}),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-disty-"+e.pointIndex).attr("x2",e.pos[0]+o.size()),e.pos=[e.pos[0]+a.left,e.pos[1]+a.top],M.tooltipShow(e)}),M.on("tooltipShow",function(e){N&&B(e,k.parentNode)}),M.on("changeState",function(t){typeof t.disabled!="undefined"&&(e.forEach(function(e,n){e.disabled=t.disabled[n]}),A.disabled=t.disabled),F.update()}),P=h.copy(),H=p.copy()}),F}var t=e.models.scatter(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.models.legend(),o=e.models.distribution(),u=e.models.distribution(),a={top:30,right:20,bottom:50,left:75},f=null,l=null,c=e.utils.defaultColor(),h=d3.fisheye?d3.fisheye.scale(d3.scale.linear).distortion(0):t.xScale(),p=d3.fisheye?d3.fisheye.scale(d3.scale.linear).distortion(0):t.yScale(),d=0,v=0,m=!1,g=!1,y=!0,b=!0,w=!0,E=!1,S=!!d3.fisheye,x=0,T=!1,N=!0,C=function(e,t,n){return"<strong>"+t+"</strong>"},k=function(e,t,n){return"<strong>"+n+"</strong>"},L=null,A={},O=null,M=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),_="No Data Available.",D=0;t.xScale(h).yScale(p),n.orient("bottom").tickPadding(10),r.orient(E?"right":"left").tickPadding(10),o.axis("x"),u.axis("y"),s.updateState(!1);var P,H,B=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),f=i.pos[0]+(s.offsetLeft||0),l=p.range()[0]+a.top+(s.offsetTop||0),c=h.range()[0]+a.left+(s.offsetLeft||0),d=i.pos[1]+(s.offsetTop||0),v=n.tickFormat()(t.x()(i.point,i.pointIndex)),m=r.tickFormat()(t.y()(i.point,i.pointIndex));C!=null&&e.tooltip.show([f,l],C(i.series.key,v,m,i,F),"n",1,s,"x-nvtooltip"),k!=null&&e.tooltip.show([c,d],k(i.series.key,v,m,i,F),"e",1,s,"y-nvtooltip"),L!=null&&e.tooltip.show([o,u],L(i.series.key,v,m,i,F),i.value<0?"n":"s",null,s)},j=[{key:"Magnify",disabled:!0}];return t.dispatch.on("elementMouseout.tooltip",function(e){M.tooltipHide(e),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-distx-"+e.pointIndex).attr("y1",0),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-disty-"+e.pointIndex).attr("x2",u.size())}),M.on("tooltipHide",function(){N&&e.tooltip.cleanup()}),F.dispatch=M,F.scatter=t,F.legend=i,F.controls=s,F.xAxis=n,F.yAxis=r,F.distX=o,F.distY=u,d3.rebind(F,t,"id","interactive","pointActive","x","y","shape","size","xScale","yScale","zScale","xDomain","yDomain","xRange","yRange","sizeDomain","sizeRange","forceX","forceY","forceSize","clipVoronoi","clipRadius","useVoronoi"),F.options=e.utils.optionsFunc.bind(F),F.margin=function(e){return arguments.length?(a.top=typeof e.top!="undefined"?e.top:a.top,a.right=typeof e.right!="undefined"?e.right:a.right,a.bottom=typeof e.bottom!="undefined"?e.bottom:a.bottom,a.left=typeof e.left!="undefined"?e.left:a.left,F):a},F.width=function(e){return arguments.length?(f=e,F):f},F.height=function(e){return arguments.length?(l=e,F):l},F.color=function(t){return arguments.length?(c=e.utils.getColor(t),i.color(c),o.color(c),u.color(c),F):c},F.showDistX=function(e){return arguments.length?(m=e,F):m},F.showDistY=function(e){return arguments.length?(g=e,F):g},F.showControls=function(e){return arguments.length?(S=e,F):S},F.showLegend=function(e){return arguments.length?(y=e,F):y},F.showXAxis=function(e){return arguments.length?(b=e,F):b},F.showYAxis=function(e){return arguments.length?(w=e,F):w},F.rightAlignYAxis=function(e){return arguments.length?(E=e,r.orient(e?"right":"left"),F):E},F.fisheye=function(e){return arguments.length?(x=e,F):x},F.xPadding=function(e){return arguments.length?(d=e,F):d},F.yPadding=function(e){return arguments.length?(v=e,F):v},F.tooltips=function(e){return arguments.length?(N=e,F):N},F.tooltipContent=function(e){return arguments.length?(L=e,F):L},F.tooltipXContent=function(e){return arguments.length?(C=e,F):C},F.tooltipYContent=function(e){return arguments.length?(k=e,F):k},F.state=function(e){return arguments.length?(A=e,F):A},F.defaultState=function(e){return arguments.length?(O=e,F):O},F.noData=function(e){return arguments.length?(_=e,F):_},F.transitionDuration=function(e){return arguments.length?(D=e,F):D},F},e.models.scatterPlusLineChart=function(){function B(e){return e.each(function(e){function V(){if(S)return U.select(".nv-point-paths").style("pointer-events","all"),!1;U.select(".nv-point-paths").style("pointer-events","none");var i=d3.mouse(this);h.distortion(E).focus(i[0]),p.distortion(E).focus(i[1]),U.select(".nv-scatterWrap").datum(e.filter(function(e){return!e.disabled})).call(t),g&&U.select(".nv-x.nv-axis").call(n),y&&U.select(".nv-y.nv-axis").call(r),U.select(".nv-distributionX").datum(e.filter(function(e){return!e.disabled})).call(o),U.select(".nv-distributionY").datum(e.filter(function(e){return!e.disabled})).call(u)}var T=d3.select(this),N=this,C=(f||parseInt(T.style("width"))||960)-a.left-a.right,M=(l||parseInt(T.style("height"))||400)-a.top-a.bottom;B.update=function(){T.call(B)},B.container=this,k.disabled=e.map(function(e){return!!e.disabled});if(!L){var j;L={};for(j in k)k[j]instanceof Array?L[j]=k[j].slice(0):L[j]=k[j]}if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var F=T.selectAll(".nv-noData").data([O]);return F.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),F.attr("x",a.left+C/2).attr("y",a.top+M/2).text(function(e){return e}),B}T.selectAll(".nv-noData").remove(),h=t.xScale(),p=t.yScale(),_=_||h,D=D||p;var I=T.selectAll("g.nv-wrap.nv-scatterChart").data([e]),q=I.enter().append("g").attr("class","nvd3 nv-wrap nv-scatterChart nv-chart-"+t.id()),R=q.append("g"),U=I.select("g");R.append("rect").attr("class","nvd3 nv-background").style("pointer-events","none"),R.append("g").attr("class","nv-x nv-axis"),R.append("g").attr("class","nv-y nv-axis"),R.append("g").attr("class","nv-scatterWrap"),R.append("g").attr("class","nv-regressionLinesWrap"),R.append("g").attr("class","nv-distWrap"),R.append("g").attr("class","nv-legendWrap"),R.append("g").attr("class","nv-controlsWrap"),I.attr("transform","translate("+a.left+","+a.top+")"),b&&U.select(".nv-y.nv-axis").attr("transform","translate("+C+",0)"),m&&(i.width(C/2),I.select(".nv-legendWrap").datum(e).call(i),a.top!=i.height()&&(a.top=i.height(),M=(l||parseInt(T.style("height"))||400)-a.top-a.bottom),I.select(".nv-legendWrap").attr("transform","translate("+C/2+","+ -a.top+")")),w&&(s.width(180).color(["#444"]),U.select(".nv-controlsWrap").datum(H).attr("transform","translate(0,"+ -a.top+")").call(s)),t.width(C).height(M).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),I.select(".nv-scatterWrap").datum(e.filter(function(e){return!e.disabled})).call(t),I.select(".nv-regressionLinesWrap").attr("clip-path","url(#nv-edge-clip-"+t.id()+")");var z=I.select(".nv-regressionLinesWrap").selectAll(".nv-regLines").data(function(e){return e});z.enter().append("g").attr("class","nv-regLines");var W=z.selectAll(".nv-regLine").data(function(e){return[e]}),X=W.enter().append("line").attr("class","nv-regLine").style("stroke-opacity",0);W.attr("x1",h.range()[0]).attr("x2",h.range()[1]).attr("y1",function(e,t){return p(h.domain()[0]*e.slope+e.intercept)}).attr("y2",function(e,t){return p(h.domain()[1]*e.slope+e.intercept)}).style("stroke",function(e,t,n){return c(e,n)}).style("stroke-opacity",function(e,t){return e.disabled||typeof e.slope=="undefined"||typeof e.intercept=="undefined"?0:1}),g&&(n.scale(h).ticks(n.ticks()?n.ticks():C/100).tickSize(-M,0),U.select(".nv-x.nv-axis").attr("transform","translate(0,"+p.range()[0]+")").call(n)),y&&(r.scale(p).ticks(r.ticks()?r.ticks():M/36).tickSize(-C,0),U.select(".nv-y.nv-axis").call(r)),d&&(o.getData(t.x()).scale(h).width(C).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),R.select(".nv-distWrap").append("g").attr("class","nv-distributionX"),U.select(".nv-distributionX").attr("transform","translate(0,"+p.range()[0]+")").datum(e.filter(function(e){return!e.disabled})).call(o)),v&&(u.getData(t.y()).scale(p).width(M).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),R.select(".nv-distWrap").append("g").attr("class","nv-distributionY"),U.select(".nv-distributionY").attr("transform","translate("+(b?C:-u.size())+",0)").datum(e.filter(function(e){return!e.disabled})).call(u)),d3.fisheye&&(U.select(".nv-background").attr("width",C).attr("height",M),U.select(".nv-background").on("mousemove",V),U.select(".nv-background").on("click",function(){S=!S}),t.dispatch.on("elementClick.freezeFisheye",function(){S=!S})),s.dispatch.on("legendClick",function(e,i){e.disabled=!e.disabled,E=e.disabled?0:2.5,U.select(".nv-background").style("pointer-events",e.disabled?"none":"all"),U.select(".nv-point-paths").style("pointer-events",e.disabled?"all":"none"),e.disabled?(h.distortion(E).focus(0),p.distortion(E).focus(0),U.select(".nv-scatterWrap").call(t),U.select(".nv-x.nv-axis").call(n),U.select(".nv-y.nv-axis").call(r)):S=!1,B.update()}),i.dispatch.on("stateChange",function(e){k=e,A.stateChange(k),B.update()}),t.dispatch.on("elementMouseover.tooltip",function(e){d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-distx-"+e.pointIndex).attr("y1",e.pos[1]-M),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-disty-"+e.pointIndex).attr("x2",e.pos[0]+o.size()),e.pos=[e.pos[0]+a.left,e.pos[1]+a.top],A.tooltipShow(e)}),A.on("tooltipShow",function(e){x&&P(e,N.parentNode)}),A.on("changeState",function(t){typeof t.disabled!="undefined"&&(e.forEach(function(e,n){e.disabled=t.disabled[n]}),k.disabled=t.disabled),B.update()}),_=h.copy(),D=p.copy()}),B}var t=e.models.scatter(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.models.legend(),o=e.models.distribution(),u=e.models.distribution(),a={top:30,right:20,bottom:50,left:75},f=null,l=null,c=e.utils.defaultColor(),h=d3.fisheye?d3.fisheye.scale(d3.scale.linear).distortion(0):t.xScale(),p=d3.fisheye?d3.fisheye.scale(d3.scale.linear).distortion(0):t.yScale(),d=!1,v=!1,m=!0,g=!0,y=!0,b=!1,w=!!d3.fisheye,E=0,S=!1,x=!0,T=function(e,t,n){return"<strong>"+t+"</strong>"},N=function(e,t,n){return"<strong>"+n+"</strong>"},C=function(e,t,n,r){return"<h3>"+e+"</h3>"+"<p>"+r+"</p>"},k={},L=null,A=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),O="No Data Available.",M=0;t.xScale(h).yScale(p),n.orient("bottom").tickPadding(10),r.orient(b?"right":"left").tickPadding(10),o.axis("x"),u.axis("y"),s.updateState(!1);var _,D,P=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),f=i.pos[0]+(s.offsetLeft||0),l=p.range()[0]+a.top+(s.offsetTop||0),c=h.range()[0]+a.left+(s.offsetLeft||0),d=i.pos[1]+(s.offsetTop||0),v=n.tickFormat()(t.x()(i.point,i.pointIndex)),m=r.tickFormat()(t.y()(i.point,i.pointIndex));T!=null&&e.tooltip.show([f,l],T(i.series.key,v,m,i,B),"n",1,s,"x-nvtooltip"),N!=null&&e.tooltip.show([c,d],N(i.series.key,v,m,i,B),"e",1,s,"y-nvtooltip"),C!=null&&e.tooltip.show([o,u],C(i.series.key,v,m,i.point.tooltip,i,B),i.value<0?"n":"s",null,s)},H=[{key:"Magnify",disabled:!0}];return t.dispatch.on("elementMouseout.tooltip",function(e){A.tooltipHide(e),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-distx-"+e.pointIndex).attr("y1",0),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-disty-"+e.pointIndex).attr("x2",u.size())}),A.on("tooltipHide",function(){x&&e.tooltip.cleanup()}),B.dispatch=A,B.scatter=t,B.legend=i,B.controls=s,B.xAxis=n,B.yAxis=r,B.distX=o,B.distY=u,d3.rebind(B,t,"id","interactive","pointActive","x","y","shape","size","xScale","yScale","zScale","xDomain","yDomain","xRange","yRange","sizeDomain","sizeRange","forceX","forceY","forceSize","clipVoronoi","clipRadius","useVoronoi"),B.options=e.utils.optionsFunc.bind(B),B.margin=function(e){return arguments.length?(a.top=typeof e.top!="undefined"?e.top:a.top,a.right=typeof e.right!="undefined"?e.right:a.right,a.bottom=typeof e.bottom!="undefined"?e.bottom:a.bottom,a.left=typeof e.left!="undefined"?e.left:a.left,B):a},B.width=function(e){return arguments.length?(f=e,B):f},B.height=function(e){return arguments.length?(l=e,B):l},B.color=function(t){return arguments.length?(c=e.utils.getColor(t),i.color(c),o.color(c),u.color(c),B):c},B.showDistX=function(e){return arguments.length?(d=e,B):d},B.showDistY=function(e){return arguments.length?(v=e,B):v},B.showControls=function(e){return arguments.length?(w=e,B):w},B.showLegend=function(e){return arguments.length?(m=e,B):m},B.showXAxis=function(e){return arguments.length?(g=e,B):g},B.showYAxis=function(e){return arguments.length?(y=e,B):y},B.rightAlignYAxis=function(e){return arguments.length?(b=e,r.orient(e?"right":"left"),B):b},B.fisheye=function(e){return arguments.length?(E=e,B):E},B.tooltips=function(e){return arguments.length?(x=e,B):x},B.tooltipContent=function(e){return arguments.length?(C=e,B):C},B.tooltipXContent=function(e){return arguments.length?(T=e,B):T},B.tooltipYContent=function(e){return arguments.length?(N=e,B):N},B.state=function(e){return arguments.length?(k=e,B):k},B.defaultState=function(e){return arguments.length?(L=e,B):L},B.noData=function(e){return arguments.length?(O=e,B):O},B.transitionDuration=function(e){return arguments.length?(M=e,B):M},B},e.models.sparkline=function(){function d(e){return e.each(function(e){var i=n-t.left-t.right,d=r-t.top-t.bottom,v=d3.select(this);s.domain(l||d3.extent(e,u)).range(h||[0,i]),o.domain(c||d3.extent(e,a)).range(p||[d,0]);var m=v.selectAll("g.nv-wrap.nv-sparkline").data([e]),g=m.enter().append("g").attr("class","nvd3 nv-wrap nv-sparkline"),b=g.append("g"),w=m.select("g");m.attr("transform","translate("+t.left+","+t.top+")");var E=m.selectAll("path").data(function(e){return[e]});E.enter().append("path"),E.exit().remove(),E.style("stroke",function(e,t){return e.color||f(e,t)}).attr("d",d3.svg.line().x(function(e,t){return s(u(e,t))}).y(function(e,t){return o(a(e,t))}));var S=m.selectAll("circle.nv-point").data(function(e){function n(t){if(t!=-1){var n=e[t];return n.pointIndex=t,n}return null}var t=e.map(function(e,t){return a(e,t)}),r=n(t.lastIndexOf(o.domain()[1])),i=n(t.indexOf(o.domain()[0])),s=n(t.length-1);return[i,r,s].filter(function(e){return e!=null})});S.enter().append("circle"),S.exit().remove(),S.attr("cx",function(e,t){return s(u(e,e.pointIndex))}).attr("cy",function(e,t){return o(a(e,e.pointIndex))}).attr("r",2).attr("class",function(e,t){return u(e,e.pointIndex)==s.domain()[1]?"nv-point nv-currentValue":a(e,e.pointIndex)==o.domain()[0]?"nv-point nv-minValue":"nv-point nv-maxValue"})}),d}var t={top:2,right:0,bottom:2,left:0},n=400,r=32,i=!0,s=d3.scale.linear(),o=d3.scale.linear(),u=function(e){return e.x},a=function(e){return e.y},f=e.utils.getColor(["#000"]),l,c,h,p;return d.options=e.utils.optionsFunc.bind(d),d.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,d):t},d.width=function(e){return arguments.length?(n=e,d):n},d.height=function(e){return arguments.length?(r=e,d):r},d.x=function(e){return arguments.length?(u=d3.functor(e),d):u},d.y=function(e){return arguments.length?(a=d3.functor(e),d):a},d.xScale=function(e){return arguments.length?(s=e,d):s},d.yScale=function(e){return arguments.length?(o=e,d):o},d.xDomain=function(e){return arguments.length?(l=e,d):l},d.yDomain=function(e){return arguments.length?(c=e,d):c},d.xRange=function(e){return arguments.length?(h=e,d):h},d.yRange=function(e){return arguments.length?(p=e,d):p},d.animate=function(e){return arguments.length?(i=e,d):i},d.color=function(t){return arguments.length?(f=e.utils.getColor(t),d):f},d},e.models.sparklinePlus=function(){function v(e){return e.each(function(c){function O(){if(a)return;var e=C.selectAll(".nv-hoverValue").data(u),r=e.enter().append("g").attr("class","nv-hoverValue").style("stroke-opacity",0).style("fill-opacity",0);e.exit().style("stroke-opacity",0).style("fill-opacity",0).remove(),e.attr("transform",function(e){return"translate("+s(t.x()(c[e],e))+",0)"}).style("stroke-opacity",1).style("fill-opacity",1);if(!u.length)return;r.append("line").attr("x1",0).attr("y1",-n.top).attr("x2",0).attr("y2",b),r.append("text").attr("class","nv-xValue").attr("x",-6).attr("y",-n.top).attr("text-anchor","end").attr("dy",".9em"),C.select(".nv-hoverValue .nv-xValue").text(f(t.x()(c[u[0]],u[0]))),r.append("text").attr("class","nv-yValue").attr("x",6).attr("y",-n.top).attr("text-anchor","start").attr("dy",".9em"),C.select(".nv-hoverValue .nv-yValue").text(l(t.y()(c[u[0]],u[0])))}function M(){function r(e,n){var r=Math.abs(t.x()(e[0],0)-n),i=0;for(var s=0;s<e.length;s++)Math.abs(t.x()(e[s],s)-n)<r&&(r=Math.abs(t.x()(e[s],s)-n),i=s);return i}if(a)return;var e=d3.mouse(this)[0]-n.left;u=[r(c,Math.round(s.invert(e)))],O()}var m=d3.select(this),g=(r||parseInt(m.style("width"))||960)-n.left-n.right,b=(i||parseInt(m.style("height"))||400)-n.top-n.bottom;v.update=function(){v(e)},v.container=this;if(!c||!c.length){var w=m.selectAll(".nv-noData").data([d]);return w.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),w.attr("x",n.left+g/2).attr("y",n.top+b/2).text(function(e){return e}),v}m.selectAll(".nv-noData").remove();var E=t.y()(c[c.length-1],c.length-1);s=t.xScale(),o=t.yScale();var S=m.selectAll("g.nv-wrap.nv-sparklineplus").data([c]),T=S.enter().append("g").attr("class","nvd3 nv-wrap nv-sparklineplus"),N=T.append("g"),C=S.select("g");N.append("g").attr("class","nv-sparklineWrap"),N.append("g").attr("class","nv-valueWrap"),N.append("g").attr("class","nv-hoverArea"),S.attr("transform","translate("+n.left+","+n.top+")");var k=C.select(".nv-sparklineWrap");t.width(g).height(b),k.call(t);var L=C.select(".nv-valueWrap"),A=L.selectAll(".nv-currentValue").data([E]);A.enter().append("text").attr("class","nv-currentValue").attr("dx",p?-8:8).attr("dy",".9em").style("text-anchor",p?"end":"start"),A.attr("x",g+(p?n.right:0)).attr("y",h?function(e){return o(e)}:0).style("fill",t.color()(c[c.length-1],c.length-1)).text(l(E)),N.select(".nv-hoverArea").append("rect").on("mousemove",M).on("click",function(){a=!a}).on("mouseout",function(){u=[],O()}),C.select(".nv-hoverArea rect").attr("transform",function(e){return"translate("+ -n.left+","+ -n.top+")"}).attr("width",g+n.left+n.right).attr("height",b+n.top)}),v}var t=e.models.sparkline(),n={top:15,right:100,bottom:10,left:50},r=null,i=null,s,o,u=[],a=!1,f=d3.format(",r"),l=d3.format(",.2f"),c=!0,h=!0,p=!1,d="No Data Available.";return v.sparkline=t,d3.rebind(v,t,"x","y","xScale","yScale","color"),v.options=e.utils.optionsFunc.bind(v),v.margin=function(e){return arguments.length?(n.top=typeof e.top!="undefined"?e.top:n.top,n.right=typeof e.right!="undefined"?e.right:n.right,n.bottom=typeof e.bottom!="undefined"?e.bottom:n.bottom,n.left=typeof e.left!="undefined"?e.left:n.left,v):n},v.width=function(e){return arguments.length?(r=e,v):r},v.height=function(e){return arguments.length?(i=e,v):i},v.xTickFormat=function(e){return arguments.length?(f=e,v):f},v.yTickFormat=function(e){return arguments.length?(l=e,v):l},v.showValue=function(e){return arguments.length?(c=e,v):c},v.alignValue=function(e){return arguments.length?(h=e,v):h},v.rightAlignValue=function(e){return arguments.length?(p=e,v):p},v.noData=function(e){return arguments.length?(d=e,v):d},v},e.models.stackedArea=function(){function g(e){return e.each(function(e){var a=n-t.left-t.right,b=r-t.top-t.bottom,w=d3.select(this);p=v.xScale(),d=v.yScale();var E=e;e.forEach(function(e,t){e.seriesIndex=t,e.values=e.values.map(function(e,n){return e.index=n,e.seriesIndex=t,e})});var S=e.filter(function(e){return!e.disabled});e=d3.layout.stack().order(l).offset(f).values(function(e){return e.values}).x(o).y(u).out(function(e,t,n){var r=u(e)===0?0:n;e.display={y:r,y0:t}})(S);var T=w.selectAll("g.nv-wrap.nv-stackedarea").data([e]),N=T.enter().append("g").attr("class","nvd3 nv-wrap nv-stackedarea"),C=N.append("defs"),k=N.append("g"),L=T.select("g");k.append("g").attr("class","nv-areaWrap"),k.append("g").attr("class","nv-scatterWrap"),T.attr("transform","translate("+t.left+","+t.top+")"),v.width(a).height(b).x(o).y(function(e){return e.display.y+e.display.y0}).forceY([0]).color(e.map(function(e,t){return e.color||i(e,e.seriesIndex)}));var A=L.select(".nv-scatterWrap").datum(e);A.call(v),C.append("clipPath").attr("id","nv-edge-clip-"+s).append("rect"),T.select("#nv-edge-clip-"+s+" rect").attr("width",a).attr("height",b),L.attr("clip-path",h?"url(#nv-edge-clip-"+s+")":"");var O=d3.svg.area().x(function(e,t){return p(o(e,t))}).y0(function(e){return d(e.display.y0)}).y1(function(e){return d(e.display.y+e.display.y0)}).interpolate(c),M=d3.svg.area().x(function(e,t){return p(o(e,t))}).y0(function(e){return d(e.display.y0)}).y1(function(e){return d(e.display.y0)}),_=L.select(".nv-areaWrap").selectAll("path.nv-area").data(function(e){return e});_.enter().append("path").attr("class",function(e,t){return"nv-area nv-area-"+t}).attr("d",function(e,t){return M(e.values,e.seriesIndex)}).on("mouseover",function(e,t){d3.select(this).classed("hover",!0),m.areaMouseover({point:e,series:e.key,pos:[d3.event.pageX,d3.event.pageY],seriesIndex:e.seriesIndex})}).on("mouseout",function(e,t){d3.select(this).classed("hover",!1),m.areaMouseout({point:e,series:e.key,pos:[d3.event.pageX,d3.event.pageY],seriesIndex:e.seriesIndex})}).on("click",function(e,t){d3.select(this).classed("hover",!1),m.areaClick({point:e,series:e.key,pos:[d3.event.pageX,d3.event.pageY],seriesIndex:e.seriesIndex})}),_.exit().remove(),_.style("fill",function(e,t){return e.color||i(e,e.seriesIndex)}).style("stroke",function(e,t){return e.color||i(e,e.seriesIndex)}),_.attr("d",function(e,t){return O(e.values,t)}),v.dispatch.on("elementMouseover.area",function(e){L.select(".nv-chart-"+s+" .nv-area-"+e.seriesIndex).classed("hover",!0)}),v.dispatch.on("elementMouseout.area",function(e){L.select(".nv-chart-"+s+" .nv-area-"+e.seriesIndex).classed("hover",!1)}),g.d3_stackedOffset_stackPercent=function(e){var t=e.length,n=e[0].length,r=1/t,i,s,o,a=[];for(s=0;s<n;++s){for(i=0,o=0;i<E.length;i++)o+=u(E[i].values[s]);if(o)for(i=0;i<t;i++)e[i][s][1]/=o;else for(i=0;i<t;i++)e[i][s][1]=r}for(s=0;s<n;++s)a[s]=0;return a}}),g}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=e.utils.defaultColor(),s=Math.floor(Math.random()*1e5),o=function(e){return e.x},u=function(e){return e.y},a="stack",f="zero",l="default",c="linear",h=!1,p,d,v=e.models.scatter(),m=d3.dispatch("tooltipShow","tooltipHide","areaClick","areaMouseover","areaMouseout");return v.size(2.2).sizeDomain([2.2,2.2]),v.dispatch.on("elementClick.area",function(e){m.areaClick(e)}),v.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],m.tooltipShow(e)}),v.dispatch.on("elementMouseout.tooltip",function(e){m.tooltipHide(e)}),g.dispatch=m,g.scatter=v,d3.rebind(g,v,"interactive","size","xScale","yScale","zScale","xDomain","yDomain","xRange","yRange","sizeDomain","forceX","forceY","forceSize","clipVoronoi","useVoronoi","clipRadius","highlightPoint","clearHighlights"),g.options=e.utils.optionsFunc.bind(g),g.x=function(e){return arguments.length?(o=d3.functor(e),g):o},g.y=function(e){return arguments.length?(u=d3.functor(e),g):u},g.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,g):t},g.width=function(e){return arguments.length?(n=e,g):n},g.height=function(e){return arguments.length?(r=e,g):r},g.clipEdge=function(e){return arguments.length?(h=e,g):h},g.color=function(t){return arguments.length?(i=e.utils.getColor(t),g):i},g.offset=function(e){return arguments.length?(f=e,g):f},g.order=function(e){return arguments.length?(l=e,g):l},g.style=function(e){if(!arguments.length)return a;a=e;switch(a){case"stack":g.offset("zero"),g.order("default");break;case"stream":g.offset("wiggle"),g.order("inside-out");break;case"stream-center":g.offset("silhouette"),g.order("inside-out");break;case"expand":g.offset("expand"),g.order("default");break;case"stack_percent":g.offset(g.d3_stackedOffset_stackPercent),g.order("default")}return g},g.interpolate=function(e){return arguments.length?(c=e,g):c},g},e.models.stackedAreaChart=function(){function M(y){return y.each(function(y){var A=d3.select(this),_=this,D=(a||parseInt(A.style("width"))||960)-u.left-u.right,P=(f||parseInt(A.style("height"))||400)-u.top-u.bottom;M.update=function(){A.call(M)},M.container=this,S.disabled=y.map(function(e){return!!e.disabled});if(!x){var H;x={};for(H in S)S[H]instanceof Array?x[H]=S[H].slice(0):x[H]=S[H]}if(!y||!y.length||!y.filter(function(e){return e.values.length}).length){var B=A.selectAll(".nv-noData").data([T]);return B.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),B.attr("x",u.left+D/2).attr("y",u.top+P/2).text(function(e){return e}),M}A.selectAll(".nv-noData").remove(),b=t.xScale(),w=t.yScale();var j=A.selectAll("g.nv-wrap.nv-stackedAreaChart").data([y]),F=j.enter().append("g").attr("class","nvd3 nv-wrap nv-stackedAreaChart").append("g"),I=j.select("g");F.append("rect").style("opacity",0),F.append("g").attr("class","nv-x nv-axis"),F.append("g").attr("class","nv-y nv-axis"),F.append("g").attr("class","nv-stackedWrap"),F.append("g").attr("class","nv-legendWrap"),F.append("g").attr("class","nv-controlsWrap"),F.append("g").attr("class","nv-interactive"),I.select("rect").attr("width",D).attr("height",P);if(h){var q=c?D-C:D;i.width(q),I.select(".nv-legendWrap").datum(y).call(i),u.top!=i.height()&&(u.top=i.height(),P=(f||parseInt(A.style("height"))||400)-u.top-u.bottom),I.select(".nv-legendWrap").attr("transform","translate("+(D-q)+","+ -u.top+")")}if(c){var R=[{key:L.stacked||"Stacked",metaKey:"Stacked",disabled:t.style()!="stack",style:"stack"},{key:L.stream||"Stream",metaKey:"Stream",disabled:t.style()!="stream",style:"stream"},{key:L.expanded||"Expanded",metaKey:"Expanded",disabled:t.style()!="expand",style:"expand"},{key:L.stack_percent||"Stack %",metaKey:"Stack_Percent",disabled:t.style()!="stack_percent",style:"stack_percent"}];C=k.length/3*260,R=R.filter(function(e){return k.indexOf(e.metaKey)!==-1}),s.width(C).color(["#444","#444","#444"]),I.select(".nv-controlsWrap").datum(R).call(s),u.top!=Math.max(s.height(),i.height())&&(u.top=Math.max(s.height(),i.height()),P=(f||parseInt(A.style("height"))||400)-u.top-u.bottom),I.select(".nv-controlsWrap").attr("transform","translate(0,"+ -u.top+")")}j.attr("transform","translate("+u.left+","+u.top+")"),v&&I.select(".nv-y.nv-axis").attr("transform","translate("+D+",0)"),m&&(o.width(D).height(P).margin({left:u.left,top:u.top}).svgContainer(A).xScale(b),j.select(".nv-interactive").call(o)),t.width(D).height(P);var U=I.select(".nv-stackedWrap").datum(y);U.call(t),p&&(n.scale(b).ticks(D/100).tickSize(-P,0),I.select(".nv-x.nv-axis").attr("transform","translate(0,"+P+")"),I.select(".nv-x.nv-axis").call(n)),d&&(r.scale(w).ticks(t.offset()=="wiggle"?0:P/36).tickSize(-D,0).setTickFormat(t.style()=="expand"||t.style()=="stack_percent"?d3.format("%"):E),I.select(".nv-y.nv-axis").call(r)),t.dispatch.on("areaClick.toggle",function(e){y.filter(function(e){return!e.disabled}).length===1?y.forEach(function(e){e.disabled=!1}):y.forEach(function(t,n){t.disabled=n!=e.seriesIndex}),S.disabled=y.map(function(e){return!!e.disabled}),N.stateChange(S),M.update()}),i.dispatch.on("stateChange",function(e){S.disabled=e.disabled,N.stateChange(S),M.update()}),s.dispatch.on("legendClick",function(e,n){if(!e.disabled)return;R=R.map(function(e){return e.disabled=!0,e}),e.disabled=!1,t.style(e.style),S.style=t.style(),N.stateChange(S),M.update()}),o.dispatch.on("elementMousemove",function(i){t.clearHighlights();var s,a,f,c=[];y.filter(function(e,t){return e.seriesIndex=t,!e.disabled}).forEach(function(n,r){a=e.interactiveBisect(n.values,i.pointXValue,M.x()),t.highlightPoint(r,a,!0);var o=n.values[a];if(typeof o=="undefined")return;typeof s=="undefined"&&(s=o),typeof f=="undefined"&&(f=M.xScale()(M.x()(o,a)));var u=t.style()=="expand"?o.display.y:M.y()(o,a);c.push({key:n.key,value:u,color:l(n,n.seriesIndex),stackedValue:o.display})}),c.reverse();if(c.length>2){var h=M.yScale().invert(i.mouseY),p=Infinity,d=null;c.forEach(function(e,t){h=Math.abs(h);var n=Math.abs(e.stackedValue.y0),r=Math.abs(e.stackedValue.y);if(h>=n&&h<=r+n){d=t;return}}),d!=null&&(c[d].highlight=!0)}var v=n.tickFormat()(M.x()(s,a)),m=t.style()=="expand"?function(e,t){return d3.format(".1%")(e)}:function(e,t){return r.tickFormat()(e)};o.tooltip.position({left:f+u.left,top:i.mouseY+u.top}).chartContainer(_.parentNode).enabled(g).valueFormatter(m).data({value:v,series:c})(),o.renderGuideLine(f)}),o.dispatch.on("elementMouseout",function(e){N.tooltipHide(),t.clearHighlights()}),N.on("tooltipShow",function(e){g&&O(e,_.parentNode)}),N.on("changeState",function(e){typeof e.disabled!="undefined"&&y.length===e.disabled.length&&(y.forEach(function(t,n){t.disabled=e.disabled[n]}),S.disabled=e.disabled),typeof e.style!="undefined"&&t.style(e.style),M.update()})}),M}var t=e.models.stackedArea(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.models.legend(),o=e.interactiveGuideline(),u={top:30,right:25,bottom:50,left:60},a=null,f=null,l=e.utils.defaultColor(),c=!0,h=!0,p=!0,d=!0,v=!1,m=!1,g=!0,y=function(e,t,n,r,i){return"<h3>"+e+"</h3>"+"<p>"+n+" on "+t+"</p>"},b,w,E=d3.format(",.2f"),S={style:t.style()},x=null,T="No Data Available.",N=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),C=250,k=["Stacked","Stream","Expanded"],L={},A=0;n.orient("bottom").tickPadding(7),r.orient(v?"right":"left"),s.updateState(!1);var O=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),a=n.tickFormat()(t.x()(i.point,i.pointIndex)),f=r.tickFormat()(t.y()(i.point,i.pointIndex)),l=y(i.series.key,a,f,i,M);e.tooltip.show([o,u],l,i.value<0?"n":"s",null,s)};return t.dispatch.on("tooltipShow",function(e){e.pos=[e.pos[0]+u.left,e.pos[1]+u.top],N.tooltipShow(e)}),t.dispatch.on("tooltipHide",function(e){N.tooltipHide(e)}),N.on("tooltipHide",function(){g&&e.tooltip.cleanup()}),M.dispatch=N,M.stacked=t,M.legend=i,M.controls=s,M.xAxis=n,M.yAxis=r,M.interactiveLayer=o,d3.rebind(M,t,"x","y","size","xScale","yScale","xDomain","yDomain","xRange","yRange","sizeDomain","interactive","useVoronoi","offset","order","style","clipEdge","forceX","forceY","forceSize","interpolate"),M.options=e.utils.optionsFunc.bind(M),M.margin=function(e){return arguments.length?(u.top=typeof e.top!="undefined"?e.top:u.top,u.right=typeof e.right!="undefined"?e.right:u.right,u.bottom=typeof e.bottom!="undefined"?e.bottom:u.bottom,u.left=typeof e.left!="undefined"?e.left:u.left,M):u},M.width=function(e){return arguments.length?(a=e,M):a},M.height=function(e){return arguments.length?(f=e,M):f},M.color=function(n){return arguments.length?(l=e.utils.getColor(n),i.color(l),t.color(l),M):l},M.showControls=function(e){return arguments.length?(c=e,M):c},M.showLegend=function(e){return arguments.length?(h=e,M):h},M.showXAxis=function(e){return arguments.length?(p=e,M):p},M.showYAxis=function(e){return arguments.length?(d=e,M):d},M.rightAlignYAxis=function(e){return arguments.length?(v=e,r.orient(e?"right":"left"),M):v},M.useInteractiveGuideline=function(e){return arguments.length?(m=e,e===!0&&(M.interactive(!1),M.useVoronoi(!1)),M):m},M.tooltip=function(e){return arguments.length?(y=e,M):y},M.tooltips=function(e){return arguments.length?(g=e,M):g},M.tooltipContent=function(e){return arguments.length?(y=e,M):y},M.state=function(e){return arguments.length?(S=e,M):S},M.defaultState=function(e){return arguments.length?(x=e,M):x},M.noData=function(e){return arguments.length?(T=e,M):T},M.transitionDuration=function(e){return arguments.length?(A=e,M):A},M.controlsData=function(e){return arguments.length?(k=e,M):k},M.controlLabels=function(e){return arguments.length?typeof e!="object"?L:(L=e,M):L},r.setTickFormat=r.tickFormat,r.tickFormat=function(e){return arguments.length?(E=e,r):E},M}}(),define("plugin/plugins/nvd3/nv.d3",function(){}),define("plugin/charts/nvd3/common/config",["plugin/charts/forms/default","plugin/plugins/nvd3/nv.d3"],function(e){return $.extend(!0,{},e,{title:"",category:"",library:"NVD3",tag:"svg",keywords:"small",query_limit:500})}),define("plugin/charts/nvd3/bar/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Regular",category:"Bar diagrams",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/bar_stacked/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Stacked",category:"Bar diagrams",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/bar_horizontal/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Horizontal",category:"Bar diagrams",settings:{x_axis_type:{init:"hide"}},columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/bar_horizontal_stacked/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Stacked horizontal",category:"Bar diagrams",settings:{x_axis_type:{init:"hide"}},columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/line_focus/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Line with focus",category:"Others",zoomable:"native",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/pie/config",["plugin/plugins/nvd3/nv.d3"],function(){return $.extend(!0,{},{title:"Pie chart",category:"Area charts",library:"NVD3",tag:"svg",keywords:"small",columns:{label:{title:"Labels",is_label:!0,is_auto:!0},y:{title:"Values",is_numeric:!0}},settings:{main_separator:{type:"separator",title:"Pie chart settings"},donut_ratio:{title:"Donut ratio",info:"Determine how large the donut hole will be.",type:"select",init:"0.5",data:[{label:"50%",value:"0.5"},{label:"25%",value:"0.25"},{label:"10%",value:"0.10"},{label:"0%",value:"0"}]},show_legend:{title:"Show legend",info:"Would you like to add a legend?",type:"radiobutton",init:"false",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]},label_separator:{type:"separator",title:"Label settings"},label_type:{title:"Donut label",info:"What would you like to show for each slice?",type:"select",init:"percent",data:[{label:"-- Nothing --",value:"hide",hide:"label_outside"},{label:"Label column",value:"key",show:"label_outside"},{label:"Value column",value:"value",show:"label_outside"},{label:"Percentage",value:"percent",show:"label_outside"}]},label_outside:{title:"Show outside",info:"Would you like to show labels outside the donut?",type:"radiobutton",init:"false",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]},use_panels:{init:"true",hide:!0}}})}),define("plugin/charts/nvd3/stackedarea_full/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Expanded",zoomable:!0,category:"Area charts",keywords:"default small",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/stackedarea_stream/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Stream",category:"Area charts",zoomable:!0,keywords:"default small",showmaxmin:!0,columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/histogram/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Histogram",category:"Data processing (requires 'charts' tool from Toolshed)",execute:"histogram",keywords:"small medium large",columns:{y:{title:"Observations",is_numeric:!0}},settings:{x_axis_label:{init:"Values"},y_axis_label:{init:"Density"},y_axis_type:{init:"f"},y_axis_precision:{init:".2"}}})}),define("plugin/charts/nvd3/line/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Line chart",category:"Others",zoomable:!0,columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/scatter/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Scatter plot",category:"Others",zoomable:!0,columns:{x:{title:"Values for x-axis",is_numeric:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/stackedarea/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Regular",zoomable:!0,category:"Area charts",keywords:"default small",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/jqplot/common/config",["plugin/charts/forms/default"],function(e){return $.extend(!0,{},e,{title:"",category:"",library:"jqPlot",tag:"div",zoomable:!0,keywords:"medium",query_limit:1e4,settings:{separator_grid:{title:"Grids",type:"separator"},x_axis_grid:{title:"Axis grid",info:"Would you like to show grid lines for the X axis?",type:"radiobutton",init:"false",data:[{label:"On",value:"true"},{label:"Off",value:"false"}]},y_axis_grid:{title:"Axis grid",info:"Would you like to show grid lines for the Y axis?",type:"radiobutton",init:"true",data:[{label:"On",value:"true"},{label:"Off",value:"false"}]}}})}),define("plugin/charts/jqplot/bar/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Regular",category:"Bar diagrams",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/jqplot/line/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Line chart",category:"Others",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/jqplot/scatter/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Scatter plot",category:"Others",columns:{x:{title:"Values for x-axis",is_numeric:!0},y:{title:"Values for y-axis",is_numeric:!0}},settings:{x_axis_grid:{init:"true"}}})}),define("plugin/charts/jqplot/boxplot/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Box plot",category:"Data processing (requires 'charts' tool from Toolshed)",library:"jqPlot",tag:"div",execute:"boxplot",keywords:"small medium large",columns:{y:{title:"Observations",is_numeric:!0}},settings:{show_legend:{init:"false"}}})}),define("plugin/charts/jqplot/histogram_discrete/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Discrete Histogram",category:"Data processing (requires 'charts' tool from Toolshed)",execute:"histogramdiscrete",keywords:"small medium large",columns:{x:{title:"Observations",is_label:!0}},settings:{x_axis_label:{init:"Breaks"},y_axis_label:{init:"Density"}}})}),define("plugin/charts/others/heatmap/config",["plugin/charts/forms/default"],function(e){return $.extend(!0,{},e,{title:"Heatmap",category:"Others",query_limit:1e3,library:"Custom",tag:"svg",keywords:"small",zoomable:!0,columns:{x:{title:"Column labels",is_label:!0,is_numeric:!0,is_unique:!0},y:{title:"Row labels",is_label:!0,is_numeric:!0,is_unique:!0},z:{title:"Observation",is_numeric:!0}},settings:{use_panels:{init:"true",hide:!0},color_set:{title:"Color scheme",info:"Select a color scheme for your heatmap",type:"select",init:"jet",data:[{label:"Cold-to-Hot",value:"hot"},{label:"Cool",value:"cool"},{label:"Copper",value:"copper"},{label:"Gray scale",value:"gray"},{label:"Jet",value:"jet"},{label:"No-Green",value:"no_green"},{label:"Ocean",value:"ocean"},{label:"Polar",value:"polar"},{label:"Red-to-Green",value:"redgreen"},{label:"Red-to-green (saturated)",value:"red2green"},{label:"Relief",value:"relief"},{label:"Seismograph",value:"seis"},{label:"Sealand",value:"sealand"},{label:"Split",value:"split"},{label:"Wysiwyg",value:"wysiwyg"}]},url_template:{title:"Url template",info:"Enter a url to link the labels with external sources. Use __LABEL__ as placeholder.",type:"text",init:"",placeholder:"http://someurl.com?id=__LABEL__"}}})}),define("plugin/charts/others/heatmap_cluster/config",["plugin/charts/others/heatmap/config"],function(e){return $.extend(!0,{},e,{title:"Clustered Heatmap",category:"Data processing (requires 'charts' tool from Toolshed)",execute:"heatmap",keywords:"small medium large"})}),define("plugin/charts/types",["plugin/charts/nvd3/bar/config","plugin/charts/nvd3/bar_stacked/config","plugin/charts/nvd3/bar_horizontal/config","plugin/charts/nvd3/bar_horizontal_stacked/config","plugin/charts/nvd3/line_focus/config","plugin/charts/nvd3/pie/config","plugin/charts/nvd3/stackedarea_full/config","plugin/charts/nvd3/stackedarea_stream/config","plugin/charts/nvd3/histogram/config","plugin/charts/nvd3/line/config","plugin/charts/nvd3/scatter/config","plugin/charts/nvd3/stackedarea/config","plugin/charts/jqplot/bar/config","plugin/charts/jqplot/line/config","plugin/charts/jqplot/scatter/config","plugin/charts/jqplot/boxplot/config","plugin/charts/jqplot/histogram_discrete/config","plugin/charts/others/heatmap/config","plugin/charts/others/heatmap_cluster/config"],function(e,t,n,r,i,s,o,u,a,f,l,c,h,p,d,v,m,g,y){return Backbone.Model.extend({defaults:{nvd3_bar:e,nvd3_bar_stacked:t,nvd3_bar_horizontal:n,nvd3_bar_horizontal_stacked:r,nvd3_line_focus:i,nvd3_stackedarea:c,nvd3_stackedarea_full:o,nvd3_stackedarea_stream:u,nvd3_pie:s,nvd3_line:f,nvd3_scatter:l,nvd3_histogram:a,jqplot_bar:h,jqplot_histogram_discrete:m,jqplot_line:p,jqplot_scatter:d,jqplot_boxplot:v,others_heatmap:g,others_heatmap_cluster:y}})}),define("plugin/app",["mvc/ui/ui-modal","mvc/ui/ui-portlet","plugin/library/ui","utils/utils","plugin/library/jobs","plugin/library/datasets","plugin/library/storage","plugin/views/viewer","plugin/views/editor","plugin/models/config","plugin/models/chart","plugin/charts/types"],function(e,t,n,r,i,s,o,u,a,f,l,c){return Backbone.View.extend({initialize:function(t){this.options=t,Galaxy&&Galaxy.modal?this.modal=Galaxy.modal:this.modal=new e.View,this.config=new f,this.types=new c,this.chart=new l,this.jobs=new i(this),this.datasets=new s(this),this.storage=new o(this),this.viewer_view=new u(this),this.editor_view=new a(this),this.$el.append(this.viewer_view.$el),this.$el.append(this.editor_view.$el);if(!this.storage.load())this.go("editor");else{this.go("viewer");var n=this;this.chart.deferred.execute(function(){n.chart.trigger("redraw")})}},go:function(e){$(".tooltip").hide();switch(e){case"editor":this.editor_view.show(),this.viewer_view.hide();break;case"viewer":this.editor_view.hide(),this.viewer_view.show()}},chartPath:function(e){var t=e.split(/_(.+)/);return t.length>=2?t[0]+"/"+t[1]:(console.debug("FAILED App:chartPath() - Invalid format: "+e),undefined)},execute:function(e){},onunload:function(){},log:function(e,t){console.log(e+" "+t)}})}); \ No newline at end of file +define("mvc/ui/ui-modal",[],function(){var e=Backbone.View.extend({elMain:"body",optionsDefault:{title:"ui-modal",body:"",backdrop:!0,height:null,width:null,closing_events:!1,closing_callback:null},buttonList:{},initialize:function(e){e&&this._create(e)},show:function(e){this.initialize(e),this.options.height?(this.$body.css("height",this.options.height),this.$body.css("overflow","hidden")):this.$body.css("max-height",$(window).height()/2),this.options.width&&this.$dialog.css("width",this.options.width),this.visible?this.$el.show():this.$el.fadeIn("fast"),this.visible=!0},hide:function(){this.visible=!1,this.$el.fadeOut("fast"),this.options.closing_callback&&this.options.closing_callback()},enableButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).prop("disabled",!1)},disableButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).prop("disabled",!0)},showButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).show()},hideButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).hide()},getButton:function(e){var t=this.buttonList[e];return this.$buttons.find("#"+t)},scrollTop:function(){return this.$body.scrollTop()},_create:function(e){var t=this;this.options=_.defaults(e,this.optionsDefault),this.options.body=="progress"&&(this.options.body=$('<div class="progress progress-striped active"><div class="progress-bar progress-bar-info" style="width:100%"></div></div>')),this.$el&&(this.$el.remove(),$(document).off("keyup.ui-modal")),this.setElement(this._template(this.options.title)),this.$dialog=this.$el.find(".modal-dialog"),this.$body=this.$el.find(".modal-body"),this.$footer=this.$el.find(".modal-footer"),this.$buttons=this.$el.find(".buttons"),this.$backdrop=this.$el.find(".modal-backdrop"),this.$body.html(this.options.body),this.options.backdrop||this.$backdrop.removeClass("in");if(this.options.buttons){this.buttonList={};var n=0;$.each(this.options.buttons,function(e,r){var i="button-"+n++;t.$buttons.append($('<button id="'+i+'"></button>').text(e).click(r)).append(" "),t.buttonList[e]=i})}else this.$footer.hide();$(this.elMain).append($(this.el)),this.options.closing_events&&($(document).on("keyup.ui-modal",function(e){e.keyCode==27&&t.hide()}),this.$el.find(".modal-backdrop").on("click",function(){t.hide()}))},_template:function(e){return'<div class="ui-modal modal"><div class="modal-backdrop fade in" style="z-index: -1;"></div><div class="modal-dialog"><div class="modal-content"><div class="modal-header"><button type="button" class="close" style="display: none;">×</button><h4 class="title">'+e+"</h4>"+"</div>"+'<div class="modal-body" style="position: static;"></div>'+'<div class="modal-footer">'+'<div class="buttons" style="float: right;"></div>'+"</div>"+"</div"+"</div>"+"</div>"}});return{View:e}}),function(){var e=this,t=e._,n={},r=Array.prototype,i=Object.prototype,s=Function.prototype,o=r.push,u=r.slice,a=r.concat,f=i.toString,l=i.hasOwnProperty,c=r.forEach,h=r.map,p=r.reduce,d=r.reduceRight,v=r.filter,m=r.every,g=r.some,y=r.indexOf,b=r.lastIndexOf,w=Array.isArray,E=Object.keys,S=s.bind,x=function(e){if(e instanceof x)return e;if(!(this instanceof x))return new x(e);this._wrapped=e};typeof exports!="undefined"?(typeof module!="undefined"&&module.exports&&(exports=module.exports=x),exports._=x):e._=x,x.VERSION="1.4.4";var T=x.each=x.forEach=function(e,t,r){if(e==null)return;if(c&&e.forEach===c)e.forEach(t,r);else if(e.length===+e.length){for(var i=0,s=e.length;i<s;i++)if(t.call(r,e[i],i,e)===n)return}else for(var o in e)if(x.has(e,o)&&t.call(r,e[o],o,e)===n)return};x.map=x.collect=function(e,t,n){var r=[];return e==null?r:h&&e.map===h?e.map(t,n):(T(e,function(e,i,s){r.push(t.call(n,e,i,s))}),r)};var N="Reduce of empty array with no initial value";x.reduce=x.foldl=x.inject=function(e,t,n,r){var i=arguments.length>2;e==null&&(e=[]);if(p&&e.reduce===p)return r&&(t=x.bind(t,r)),i?e.reduce(t,n):e.reduce(t);T(e,function(e,s,o){i?n=t.call(r,n,e,s,o):(n=e,i=!0)});if(!i)throw new TypeError(N);return n},x.reduceRight=x.foldr=function(e,t,n,r){var i=arguments.length>2;e==null&&(e=[]);if(d&&e.reduceRight===d)return r&&(t=x.bind(t,r)),i?e.reduceRight(t,n):e.reduceRight(t);var s=e.length;if(s!==+s){var o=x.keys(e);s=o.length}T(e,function(u,a,f){a=o?o[--s]:--s,i?n=t.call(r,n,e[a],a,f):(n=e[a],i=!0)});if(!i)throw new TypeError(N);return n},x.find=x.detect=function(e,t,n){var r;return C(e,function(e,i,s){if(t.call(n,e,i,s))return r=e,!0}),r},x.filter=x.select=function(e,t,n){var r=[];return e==null?r:v&&e.filter===v?e.filter(t,n):(T(e,function(e,i,s){t.call(n,e,i,s)&&r.push(e)}),r)},x.reject=function(e,t,n){return x.filter(e,function(e,r,i){return!t.call(n,e,r,i)},n)},x.every=x.all=function(e,t,r){t||(t=x.identity);var i=!0;return e==null?i:m&&e.every===m?e.every(t,r):(T(e,function(e,s,o){if(!(i=i&&t.call(r,e,s,o)))return n}),!!i)};var C=x.some=x.any=function(e,t,r){t||(t=x.identity);var i=!1;return e==null?i:g&&e.some===g?e.some(t,r):(T(e,function(e,s,o){if(i||(i=t.call(r,e,s,o)))return n}),!!i)};x.contains=x.include=function(e,t){return e==null?!1:y&&e.indexOf===y?e.indexOf(t)!=-1:C(e,function(e){return e===t})},x.invoke=function(e,t){var n=u.call(arguments,2),r=x.isFunction(t);return x.map(e,function(e){return(r?t:e[t]).apply(e,n)})},x.pluck=function(e,t){return x.map(e,function(e){return e[t]})},x.where=function(e,t,n){return x.isEmpty(t)?n?void 0:[]:x[n?"find":"filter"](e,function(e){for(var n in t)if(t[n]!==e[n])return!1;return!0})},x.findWhere=function(e,t){return x.where(e,t,!0)},x.max=function(e,t,n){if(!t&&x.isArray(e)&&e[0]===+e[0]&&e.length<65535)return Math.max.apply(Math,e);if(!t&&x.isEmpty(e))return-Infinity;var r={computed:-Infinity,value:-Infinity};return T(e,function(e,i,s){var o=t?t.call(n,e,i,s):e;o>=r.computed&&(r={value:e,computed:o})}),r.value},x.min=function(e,t,n){if(!t&&x.isArray(e)&&e[0]===+e[0]&&e.length<65535)return Math.min.apply(Math,e);if(!t&&x.isEmpty(e))return Infinity;var r={computed:Infinity,value:Infinity};return T(e,function(e,i,s){var o=t?t.call(n,e,i,s):e;o<r.computed&&(r={value:e,computed:o})}),r.value},x.shuffle=function(e){var t,n=0,r=[];return T(e,function(e){t=x.random(n++),r[n-1]=r[t],r[t]=e}),r};var k=function(e){return x.isFunction(e)?e:function(t){return t[e]}};x.sortBy=function(e,t,n){var r=k(t);return x.pluck(x.map(e,function(e,t,i){return{value:e,index:t,criteria:r.call(n,e,t,i)}}).sort(function(e,t){var n=e.criteria,r=t.criteria;if(n!==r){if(n>r||n===void 0)return 1;if(n<r||r===void 0)return-1}return e.index<t.index?-1:1}),"value")};var L=function(e,t,n,r){var i={},s=k(t==null?x.identity:t);return T(e,function(t,o){var u=s.call(n,t,o,e);r(i,u,t)}),i};x.groupBy=function(e,t,n){return L(e,t,n,function(e,t,n){(x.has(e,t)?e[t]:e[t]=[]).push(n)})},x.countBy=function(e,t,n){return L(e,t,n,function(e,t){x.has(e,t)||(e[t]=0),e[t]++})},x.sortedIndex=function(e,t,n,r){n=n==null?x.identity:k(n);var i=n.call(r,t),s=0,o=e.length;while(s<o){var u=s+o>>>1;n.call(r,e[u])<i?s=u+1:o=u}return s},x.toArray=function(e){return e?x.isArray(e)?u.call(e):e.length===+e.length?x.map(e,x.identity):x.values(e):[]},x.size=function(e){return e==null?0:e.length===+e.length?e.length:x.keys(e).length},x.first=x.head=x.take=function(e,t,n){return e==null?void 0:t!=null&&!n?u.call(e,0,t):e[0]},x.initial=function(e,t,n){return u.call(e,0,e.length-(t==null||n?1:t))},x.last=function(e,t,n){return e==null?void 0:t!=null&&!n?u.call(e,Math.max(e.length-t,0)):e[e.length-1]},x.rest=x.tail=x.drop=function(e,t,n){return u.call(e,t==null||n?1:t)},x.compact=function(e){return x.filter(e,x.identity)};var A=function(e,t,n){return T(e,function(e){x.isArray(e)?t?o.apply(n,e):A(e,t,n):n.push(e)}),n};x.flatten=function(e,t){return A(e,t,[])},x.without=function(e){return x.difference(e,u.call(arguments,1))},x.uniq=x.unique=function(e,t,n,r){x.isFunction(t)&&(r=n,n=t,t=!1);var i=n?x.map(e,n,r):e,s=[],o=[];return T(i,function(n,r){if(t?!r||o[o.length-1]!==n:!x.contains(o,n))o.push(n),s.push(e[r])}),s},x.union=function(){return x.uniq(a.apply(r,arguments))},x.intersection=function(e){var t=u.call(arguments,1);return x.filter(x.uniq(e),function(e){return x.every(t,function(t){return x.indexOf(t,e)>=0})})},x.difference=function(e){var t=a.apply(r,u.call(arguments,1));return x.filter(e,function(e){return!x.contains(t,e)})},x.zip=function(){var e=u.call(arguments),t=x.max(x.pluck(e,"length")),n=new Array(t);for(var r=0;r<t;r++)n[r]=x.pluck(e,""+r);return n},x.unzip=function(e){var t=[];return x.each(e,function(e,n){x.each(e,function(e,r){t.length<=r&&(t[r]=[]),t[r][n]=e})}),t},x.object=function(e,t){if(e==null)return{};var n={};for(var r=0,i=e.length;r<i;r++)t?n[e[r]]=t[r]:n[e[r][0]]=e[r][1];return n},x.indexOf=function(e,t,n){if(e==null)return-1;var r=0,i=e.length;if(n){if(typeof n!="number")return r=x.sortedIndex(e,t),e[r]===t?r:-1;r=n<0?Math.max(0,i+n):n}if(y&&e.indexOf===y)return e.indexOf(t,n);for(;r<i;r++)if(e[r]===t)return r;return-1},x.lastIndexOf=function(e,t,n){if(e==null)return-1;var r=n!=null;if(b&&e.lastIndexOf===b)return r?e.lastIndexOf(t,n):e.lastIndexOf(t);var i=r?n:e.length;while(i--)if(e[i]===t)return i;return-1},x.range=function(e,t,n){arguments.length<=1&&(t=e||0,e=0),n=arguments[2]||1;var r=Math.max(Math.ceil((t-e)/n),0),i=0,s=new Array(r);while(i<r)s[i++]=e,e+=n;return s};var O=function(){};x.bind=function(e,t){var n,r;if(e.bind===S&&S)return S.apply(e,u.call(arguments,1));if(!x.isFunction(e))throw new TypeError;return n=u.call(arguments,2),r=function(){if(this instanceof r){O.prototype=e.prototype;var i=new O;O.prototype=null;var s=e.apply(i,n.concat(u.call(arguments)));return Object(s)===s?s:i}return e.apply(t,n.concat(u.call(arguments)))}},x.partial=function(e){var t=u.call(arguments,1);return function(){return e.apply(this,t.concat(u.call(arguments)))}},x.bindAll=function(e){var t=u.call(arguments,1);if(t.length===0)throw new Error("bindAll must be passed function names");return T(t,function(t){e[t]=x.bind(e[t],e)}),e},x.memoize=function(e,t){var n={};return t||(t=x.identity),function(){var r=t.apply(this,arguments);return x.has(n,r)?n[r]:n[r]=e.apply(this,arguments)}},x.delay=function(e,t){var n=u.call(arguments,2);return setTimeout(function(){return e.apply(null,n)},t)},x.defer=function(e){return x.delay.apply(x,[e,1].concat(u.call(arguments,1)))},x.throttle=function(e,t,n){var r,i,s,o,u=0,a=function(){u=new Date,s=null,o=e.apply(r,i)};return function(){var f=new Date;!u&&n===!1&&(u=f);var l=t-(f-u);return r=this,i=arguments,l<=0?(clearTimeout(s),s=null,u=f,o=e.apply(r,i)):s||(s=setTimeout(a,l)),o}},x.debounce=function(e,t,n){var r,i;return function(){var s=this,o=arguments,u=function(){r=null,n||(i=e.apply(s,o))},a=n&&!r;return clearTimeout(r),r=setTimeout(u,t),a&&(i=e.apply(s,o)),i}},x.once=function(e){var t=!1,n;return function(){return t?n:(t=!0,n=e.apply(this,arguments),e=null,n)}},x.wrap=function(e,t){return function(){var n=[e];return o.apply(n,arguments),t.apply(this,n)}},x.compose=function(){var e=arguments;return function(){var t=arguments;for(var n=e.length-1;n>=0;n--)t=[e[n].apply(this,t)];return t[0]}},x.after=function(e,t){return e<=0?t():function(){if(--e<1)return t.apply(this,arguments)}},x.keys=E||function(e){if(e!==Object(e))throw new TypeError("Invalid object");var t=[];for(var n in e)x.has(e,n)&&t.push(n);return t},x.values=function(e){var t=[];for(var n in e)x.has(e,n)&&t.push(e[n]);return t},x.pairs=function(e){var t=[];for(var n in e)x.has(e,n)&&t.push([n,e[n]]);return t},x.invert=function(e){var t={};for(var n in e)x.has(e,n)&&(t[e[n]]=n);return t},x.functions=x.methods=function(e){var t=[];for(var n in e)x.isFunction(e[n])&&t.push(n);return t.sort()},x.extend=function(e){return T(u.call(arguments,1),function(t){if(t)for(var n in t)e[n]=t[n]}),e},x.pick=function(e){var t={},n=a.apply(r,u.call(arguments,1));return T(n,function(n){n in e&&(t[n]=e[n])}),t},x.omit=function(e){var t={},n=a.apply(r,u.call(arguments,1));for(var i in e)x.contains(n,i)||(t[i]=e[i]);return t},x.defaults=function(e){return T(u.call(arguments,1),function(t){if(t)for(var n in t)e[n]===void 0&&(e[n]=t[n])}),e},x.clone=function(e){return x.isObject(e)?x.isArray(e)?e.slice():x.extend({},e):e},x.tap=function(e,t){return t(e),e};var M=function(e,t,n,r){if(e===t)return e!==0||1/e==1/t;if(e==null||t==null)return e===t;e instanceof x&&(e=e._wrapped),t instanceof x&&(t=t._wrapped);var i=f.call(e);if(i!=f.call(t))return!1;switch(i){case"[object String]":return e==String(t);case"[object Number]":return e!=+e?t!=+t:e==0?1/e==1/t:e==+t;case"[object Date]":case"[object Boolean]":return+e==+t;case"[object RegExp]":return e.source==t.source&&e.global==t.global&&e.multiline==t.multiline&&e.ignoreCase==t.ignoreCase}if(typeof e!="object"||typeof t!="object")return!1;var s=n.length;while(s--)if(n[s]==e)return r[s]==t;n.push(e),r.push(t);var o=0,u=!0;if(i=="[object Array]"){o=e.length,u=o==t.length;if(u)while(o--)if(!(u=M(e[o],t[o],n,r)))break}else{var a=e.constructor,l=t.constructor;if(a!==l&&!(x.isFunction(a)&&a instanceof a&&x.isFunction(l)&&l instanceof l))return!1;for(var c in e)if(x.has(e,c)){o++;if(!(u=x.has(t,c)&&M(e[c],t[c],n,r)))break}if(u){for(c in t)if(x.has(t,c)&&!(o--))break;u=!o}}return n.pop(),r.pop(),u};x.isEqual=function(e,t){return M(e,t,[],[])},x.isEmpty=function(e){if(e==null)return!0;if(x.isArray(e)||x.isString(e))return e.length===0;for(var t in e)if(x.has(e,t))return!1;return!0},x.isElement=function(e){return!!e&&e.nodeType===1},x.isArray=w||function(e){return f.call(e)=="[object Array]"},x.isObject=function(e){return e===Object(e)},T(["Arguments","Function","String","Number","Date","RegExp"],function(e){x["is"+e]=function(t){return f.call(t)=="[object "+e+"]"}}),x.isArguments(arguments)||(x.isArguments=function(e){return!!e&&!!x.has(e,"callee")}),typeof /./!="function"&&(x.isFunction=function(e){return typeof e=="function"}),x.isFinite=function(e){return isFinite(e)&&!isNaN(parseFloat(e))},x.isNaN=function(e){return x.isNumber(e)&&e!=+e},x.isBoolean=function(e){return e===!0||e===!1||f.call(e)=="[object Boolean]"},x.isNull=function(e){return e===null},x.isUndefined=function(e){return e===void 0},x.has=function(e,t){return l.call(e,t)},x.noConflict=function(){return e._=t,this},x.identity=function(e){return e},x.times=function(e,t,n){var r=Array(e);for(var i=0;i<e;i++)r[i]=t.call(n,i);return r},x.random=function(e,t){return t==null&&(t=e,e=0),e+Math.floor(Math.random()*(t-e+1))};var _={escape:{"&":"&","<":"<",">":">",'"':""","'":"'","/":"/"}};_.unescape=x.invert(_.escape);var D={escape:new RegExp("["+x.keys(_.escape).join("")+"]","g"),unescape:new RegExp("("+x.keys(_.unescape).join("|")+")","g")};x.each(["escape","unescape"],function(e){x[e]=function(t){return t==null?"":(""+t).replace(D[e],function(t){return _[e][t]})}}),x.result=function(e,t){if(e==null)return void 0;var n=e[t];return x.isFunction(n)?n.call(e):n},x.mixin=function(e){T(x.functions(e),function(t){var n=x[t]=e[t];x.prototype[t]=function(){var e=[this._wrapped];return o.apply(e,arguments),F.call(this,n.apply(x,e))}})};var P=0;x.uniqueId=function(e){var t=++P+"";return e?e+t:t},x.templateSettings={evaluate:/<%([\s\S]+?)%>/g,interpolate:/<%=([\s\S]+?)%>/g,escape:/<%-([\s\S]+?)%>/g};var H=/(.)^/,B={"'":"'","\\":"\\","\r":"r","\n":"n"," ":"t","\u2028":"u2028","\u2029":"u2029"},j=/\\|'|\r|\n|\t|\u2028|\u2029/g;x.template=function(e,t,n){var r;n=x.defaults({},n,x.templateSettings);var i=new RegExp([(n.escape||H).source,(n.interpolate||H).source,(n.evaluate||H).source].join("|")+"|$","g"),s=0,o="__p+='";e.replace(i,function(t,n,r,i,u){return o+=e.slice(s,u).replace(j,function(e){return"\\"+B[e]}),n&&(o+="'+\n((__t=("+n+"))==null?'':_.escape(__t))+\n'"),r&&(o+="'+\n((__t=("+r+"))==null?'':__t)+\n'"),i&&(o+="';\n"+i+"\n__p+='"),s=u+t.length,t}),o+="';\n",n.variable||(o="with(obj||{}){\n"+o+"}\n"),o="var __t,__p='',__j=Array.prototype.join,print=function(){__p+=__j.call(arguments,'');};\n"+o+"return __p;\n";try{r=new Function(n.variable||"obj","_",o)}catch(u){throw u.source=o,u}if(t)return r(t,x);var a=function(e){return r.call(this,e,x)};return a.source="function("+(n.variable||"obj")+"){\n"+o+"}",a},x.chain=function(e){return x(e).chain()};var F=function(e){return this._chain?x(e).chain():e};x.mixin(x),T(["pop","push","reverse","shift","sort","splice","unshift"],function(e){var t=r[e];x.prototype[e]=function(){var n=this._wrapped;return t.apply(n,arguments),(e=="shift"||e=="splice")&&n.length===0&&delete n[0],F.call(this,n)}}),T(["concat","join","slice"],function(e){var t=r[e];x.prototype[e]=function(){return F.call(this,t.apply(this._wrapped,arguments))}}),x.extend(x.prototype,{chain:function(){return this._chain=!0,this},value:function(){return this._wrapped}})}.call(this),define("libs/underscore",function(e){return function(){var t,n;return t||e._}}(this)),define("utils/utils",["libs/underscore"],function(e){function t(e,t,r){n("GET",e,{},t,r)}function n(e,t,n,r,i){if(e=="GET"||e=="DELETE")t.indexOf("?")==-1?t+="?":t+="&",t+=$.param(n);var s=new XMLHttpRequest;s.open(e,t,!0),s.setRequestHeader("Accept","application/json"),s.setRequestHeader("Cache-Control","no-cache"),s.setRequestHeader("X-Requested-With","XMLHttpRequest"),s.setRequestHeader("Content-Type","application/json"),s.onloadend=function(){var e=s.status;try{response=jQuery.parseJSON(s.responseText)}catch(t){response=s.responseText}e==200?r&&r(response):i&&i(response)},e=="GET"||e=="DELETE"?s.send():s.send(JSON.stringify(n))}function r(e,t){var n=$('<div class="'+e+'"></div>');n.appendTo(":eq(0)");var r=n.css(t);return n.remove(),r}function i(e){$('link[href^="'+e+'"]').length||$('<link href="'+galaxy_config.root+e+'" rel="stylesheet">').appendTo("head")}function s(t,n){return t?e.defaults(t,n):n}function o(e,t){var n="";if(e>=1e11)e/=1e11,n="TB";else if(e>=1e8)e/=1e8,n="GB";else if(e>=1e5)e/=1e5,n="MB";else if(e>=100)e/=100,n="KB";else{if(!(e>0))return"<strong>-</strong>";e*=10,n="b"}var r=Math.round(e)/10;return t?r+" "+n:"<strong>"+r+"</strong> "+n}function u(){return"x"+Math.random().toString(36).substring(2,9)}function a(e){var t=$("<p></p>");return t.append(e),t}function f(){var e=new Date,t=(e.getHours()<10?"0":"")+e.getHours(),n=(e.getMinutes()<10?"0":"")+e.getMinutes(),r=e.getDate()+"/"+(e.getMonth()+1)+"/"+e.getFullYear()+", "+t+":"+n;return r}return{cssLoadFile:i,cssGetAttribute:r,get:t,merge:s,bytesToString:o,uuid:u,time:f,wrap:a,request:n}}),define("mvc/ui/ui-portlet",["utils/utils"],function(e){var t=Backbone.View.extend({visible:!1,optionsDefault:{title:"",icon:"",buttons:null,body:null,scrollable:!0,nopadding:!1,operations:null,placement:"bottom"},$title:null,$content:null,$buttons:null,$operations:null,initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.$content=this.$el.find("#content"),this.$title=this.$el.find("#portlet-header-text");var n=this.$el.find("#portlet-content");this.options.scrollable?n.addClass("scroll"):this.options.title?n.addClass("no-scroll"):n.addClass("no-scroll-no-title"),this.options.nopadding&&(n.css("padding","0px"),this.$content.css("padding","0px")),this.$buttons=$(this.el).find("#buttons");if(this.options.buttons){var r=this;$.each(this.options.buttons,function(e,t){t.$el.prop("id",e),r.$buttons.append(t.$el)})}else this.$buttons.remove();this.$operations=$(this.el).find("#operations");if(this.options.operations){var r=this;$.each(this.options.operations,function(e,t){t.$el.prop("id",e),r.$operations.append(t.$el)})}this.options.body&&this.append(this.options.body)},append:function(t){this.$content.append(e.wrap(t))},content:function(){return this.$content},show:function(){this.$el.fadeIn("fast"),this.visible=!0},hide:function(){this.$el.fadeOut("fast"),this.visible=!1},enableButton:function(e){this.$buttons.find("#"+e).prop("disabled",!1)},disableButton:function(e){this.$buttons.find("#"+e).prop("disabled",!0)},hideOperation:function(e){this.$operations.find("#"+e).hide()},showOperation:function(e){this.$operations.find("#"+e).show()},setOperation:function(e,t){var n=this.$operations.find("#"+e);n.off("click"),n.on("click",t)},title:function(e){var t=this.$title;return e&&t.html(e),t.html()},_template:function(e){var t='<div class="ui-portlet">';return e.title&&(t+='<div id="portlet-header" class="portlet-header"><div id="operations" style="float: right;"></div><h3>',e.icon&&(t+='<i class="icon fa '+e.icon+'"> </i>'),t+='<span id="portlet-header-text">'+e.title+"</span>"+"</h3>"+"</div>"),t+='<div id="portlet-content" class="portlet-content">',e.placement=="top"&&(t+='<div id="buttons" class="buttons"></div>'),t+='<div id="content" class="content"></div>',e.placement=="bottom"&&(t+='<div id="buttons" class="buttons"></div>'),t+="</div></div>",t}});return{View:t}}),define("plugin/library/ui-select",["utils/utils"],function(e){var t=Backbone.View.extend({optionsDefault:{id:"",cls:"",empty:"No data available",visible:!0,wait:!1},selected:null,initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.selected=this.options.value,this.setElement(this._template(this.options)),this.$select=this.$el.find("#select"),this.$icon=this.$el.find("#icon");var n=this;this.$select.on("change",function(){n.value(n.$select.val())}),this.on("change",function(){n.options.onchange&&n.options.onchange(n.value())}),this._refresh(),this.options.visible||this.hide(),this.options.wait?this.wait():this.show()},value:function(e){var t=this.selected;e!==undefined&&(this.selected=e,this.$select.val(e));var n=this.selected;return n&&n!=t&&this.options.onchange&&this.options.onchange(n),n},first:function(){var e=this.$select.find("option");return e.length>0?e.val():undefined},text:function(){return this.$select.find("option:selected").text()},show:function(){this.$icon.removeClass(),this.$icon.addClass("fa fa-caret-down"),this.$select.show(),this.$el.show()},hide:function(){this.$el.hide()},wait:function(){this.$icon.removeClass(),this.$icon.addClass("fa fa-spinner fa-spin"),this.$select.hide()},disabled:function(){return this.$select.is(":disabled")},enable:function(){this.$select.prop("disabled",!1)},disable:function(){this.$select.prop("disabled",!0)},add:function(e){this.$select.append(this._templateOption(e)),this._refresh()},del:function(e){this.$select.find("option[value="+e+"]").remove(),this.$select.trigger("change"),this._refresh()},update:function(e){this.$select.find("option").remove();for(var t in e)this.$select.append(this._templateOption(e[t]));this._refresh()},setOnChange:function(e){this.options.onchange=e},exists:function(e){return this.$select.find("option[value="+e+"]").length>0},_refresh:function(){this.$select.find("option[value=null]").remove();var e=this.$select.find("option").length;e==0?(this.disable(),this.$select.append(this._templateOption({value:"null",label:this.options.empty}))):this.enable(),this.selected&&this.$select.val(this.selected)},_templateOption:function(e){return'<option value="'+e.value+'">'+e.label+"</option>"},_template:function(e){var t='<div id="'+e.id+'" class="ui-select">'+'<div class="button">'+'<i id="icon"/>'+"</div>"+'<select id="select" class="select '+e.cls+" "+e.id+'">';for(key in e.data){var n=e.data[key],r="";if(n.value==e.value||n.value=="")r="selected";t+='<option value="'+n.value+'" '+r+">"+n.label+"</option>"}return t+="</select></div>",t}});return{View:t}}),define("plugin/library/ui-button-menu",["utils/utils"],function(e){return Backbone.View.extend({optionsDefault:{id:"",title:"","float":"right",icon:null,onclick:null,cls:"icon-btn",tooltip:"",target:"",href:"",onunload:null,visible:!0,tag:""},$menu:null,initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement($(this._template(this.options)));var n=$(this.el).find(".root"),r=this;n.on("click",function(e){$(".tooltip").hide(),e.preventDefault(),r.options.onclick&&r.options.onclick()}),this.options.visible||this.hide(),n.tooltip({title:t.tooltip,placement:"bottom"})},show:function(){$(this.el).show()},hide:function(){$(this.el).hide()},addMenu:function(t){var n={title:"",target:"",href:"",onclick:null,divider:!1,icon:null,cls:"button-menu btn-group"};n=e.merge(t,n),this.$menu||($(this.el).append(this._templateMenu()),this.$menu=$(this.el).find(".menu"));var r=$(this._templateMenuItem(n));r.on("click",function(e){e.preventDefault(),n.onclick&&n.onclick()}),this.$menu.append(r),n.divider&&this.$menu.append($(this._templateDivider()))},_templateMenuItem:function(e){var t='<li><a href="'+e.href+'" target="'+e.target+'">';return e.icon&&(t+='<i class="fa '+e.icon+'"></i>'),t+=" "+e.title+"</a>"+"</li>",t},_templateMenu:function(){return'<ul class="menu dropdown-menu pull-right" role="menu"></ul>'},_templateDivider:function(){return'<li class="divider"></li>'},_template:function(e){var t="";e.title&&(t="width: auto;");var n='<div id="'+e.id+'" style="float: '+e.float+"; "+t+'" class="ui-button-icon dropdown '+e.cls+'">';return e.title?n+='<div class="root button dropdown-toggle" data-toggle="dropdown"><i class="icon fa '+e.icon+'"/> '+'<span class="title">'+e.title+"</span>"+"</div>":n+='<i class="icon fa '+e.icon+'"/>',n+="</div>",n}})}),define("plugin/library/ui",["utils/utils","plugin/library/ui-select","plugin/library/ui-button-menu","mvc/ui/ui-modal"],function(e,t,n,r){var i=Backbone.View.extend({optionsDefault:{url:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options))},_template:function(e){return'<img class="ui-image '+e.cls+'" src="'+e.url+'"/>'}}),s=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options))},title:function(e){this.$el.html(e)},_template:function(e){return'<label class="ui-label '+e.cls+'">'+e.title+"</label>"},value:function(){return options.title}}),o=Backbone.View.extend({optionsDefault:{"float":"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){return'<div><span class="fa '+e.icon+'" class="ui-icon"/> '+e.title+"</div>"}}),u=Backbone.View.extend({optionsDefault:{id:null,title:"","float":"right",cls:"btn btn-default",icon:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",t.onclick),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){var t='<button id="'+e.id+'" type="submit" style="float: '+e.float+';" type="button" class="ui-button '+e.cls+'">';return e.icon&&(t+='<i class="icon fa '+e.icon+'"></i> '),t+=e.title+"</button>",t}}),a=Backbone.View.extend({optionsDefault:{id:null,title:"","float":"right",cls:"icon-btn",icon:"",tooltip:"",onclick:null},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",t.onclick),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){var t="";e.title&&(t="width: auto;");var n='<div id="'+e.id+'" style="float: '+e.float+"; "+t+'" class="ui-button-icon '+e.cls+'">';return e.title?n+='<div class="button"><i class="icon fa '+e.icon+'"/> '+'<span class="title">'+e.title+"</span>"+"</div>":n+='<i class="icon fa '+e.icon+'"/>',n+="</div>",n}}),f=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",t.onclick)},_template:function(e){return'<div><a href="javascript:void(0)" class="ui-anchor '+e.cls+'">'+e.title+"</a></div>"}}),l=Backbone.View.extend({optionsDefault:{message:"",status:"info",persistent:!1},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement("<div></div>")},update:function(t){this.options=e.merge(t,this.optionsDefault);if(t.message!=""){this.$el.html(this._template(this.options)),this.$el.find(".alert").append(t.message),this.$el.fadeIn();if(!t.persistent){var n=this;window.setTimeout(function(){n.$el.is(":visible")?n.$el.fadeOut():n.$el.hide()},3e3)}}else this.$el.fadeOut()},_template:function(e){return'<div class="ui-message alert alert-'+e.status+'"/>'}}),c=Backbone.View.extend({optionsDefault:{onclick:null,searchword:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options));var n=this;this.options.onclick&&this.$el.on("submit",function(e){var t=n.$el.find("#search");n.options.onclick(t.val())})},_template:function(e){return'<div class="ui-search"><form onsubmit="return false;"><input id="search" class="form-control input-sm" type="text" name="search" placeholder="Search..." value="'+e.searchword+'">'+'<button type="submit" class="btn search-btn">'+'<i class="fa fa-search"></i>'+"</button>"+"</form>"+"</div>"}}),h=Backbone.View.extend({optionsDefault:{value:"",type:"text",placeholder:"",disabled:!1,visible:!0,cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.options.disabled&&this.$el.prop("disabled",!0),this.options.visible||this.$el.hide();var n=this;this.$el.on("input",function(){n.options.onchange&&n.options.onchange(n.$el.val())})},value:function(e){return e!==undefined&&this.$el.val(e),this.$el.val()},_template:function(e){return'<input id="'+e.id+'" type="'+e.type+'" value="'+e.value+'" placeholder="'+e.placeholder+'" class="ui-input '+e.cls+'">'}}),p=Backbone.View.extend({optionsDefault:{value:"",type:"text",placeholder:"",disabled:!1,visible:!0,cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.options.disabled&&this.$el.prop("disabled",!0),this.options.visible||this.$el.hide();var n=this;this.$el.on("input",function(){n.options.onchange&&n.options.onchange(n.$el.val())})},value:function(e){return e!==undefined&&this.$el.val(e),this.$el.val()},_template:function(e){return'<textarea id="'+e.id+'" class="ui-textarea '+e.cls+'" rows="5"></textarea>'}}),d=Backbone.View.extend({optionsDefault:{value:"",visible:!0,cls:"",data:[],id:e.uuid()},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.options.visible||this.$el.hide(),this.options.value&&this.value(this.options.value),this.current=this.options.value;var n=this;this.$el.find("input").on("change",function(){n.value(n._getValue())})},value:function(e){var t=this.current;e!==undefined&&(this.$el.find("label").removeClass("active"),this.$el.find('[value="'+e+'"]').closest("label").addClass("active"),this.current=e);var n=this.current;return n!=t&&this.options.onchange&&this.options.onchange(this.current),this.current},_getValue:function(){var e=this.$el.find(":checked"),t=null;return e.length>0&&(t=e.val()),t},_template:function(e){var t='<div class="btn-group ui-radiobutton" data-toggle="buttons">';for(key in e.data){var n=e.data[key];t+='<label class="btn btn-default"><input type="radio" name="'+e.id+'" value="'+n.value+'" selected>'+n.label+"</label>"}return t+="</div>",t}});return{Anchor:f,Button:u,ButtonIcon:a,ButtonMenu:n,Icon:o,Image:i,Input:h,Label:s,Message:l,Modal:r,RadioButton:d,Searchbox:c,Select:t,Textarea:p}}),define("plugin/library/jobs",["utils/utils"],function(e){return Backbone.Model.extend({initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e,t,n,r,i){var s=this;e.state("wait","Requesting job results...");var o=e.get("dataset_id_job");o!=""?s._wait(e,r,i):s._submit(e,t,n,r,i)},cleanup:function(t){var n=this,r=t.get("dataset_id_job");r!=""&&(e.request("PUT",config.root+"api/histories/none/contents/"+r,{deleted:!0},function(){n._refreshHdas()}),t.set("dataset_id_job",""))},_submit:function(t,n,r,i,s){var o=this,u=t.id,a=t.get("type"),f=t.definition;data={tool_id:"charts",inputs:{input:{id:t.get("dataset_id"),src:"hda"},module:f.execute,columns:r,settings:n}},t.state("wait","Sending job request..."),e.request("POST",config.root+"api/tools",data,function(e){if(!e.outputs||e.outputs.length==0)t.state("failed","Job submission failed. No response."),s&&s();else{o._refreshHdas();var n=e.outputs[0];t.state("wait","Your job has been queued. You may close the browser window. The job will run in the background."),t.set("dataset_id_job",n.id),this.app.storage.save(),o._wait(t,i,s)}},function(e){var n="";e&&e.message&&e.message.data&&e.message.data.input&&(n=e.message.data.input+"."),t.state("failed","This visualization requires the 'charts' tool. Please make sure it is installed. "+n),s&&s()})},_wait:function(t,n,r){var i=this;e.request("GET",config.root+"api/datasets/"+t.get("dataset_id_job"),{},function(e){var s=!1;switch(e.state){case"ok":t.state("wait","Job completed successfully..."),n&&n(e),s=!0;break;case"error":t.state("failed","Job has failed. Please check the history for details."),r&&r(e),s=!0;break;case"running":t.state("wait","Your job is running. You may close the browser window. The job will continue in the background.")}s||setTimeout(function(){i._wait(t,n,r)},i.app.config.get("query_timeout"))})},_refreshHdas:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.refreshContents()}})}),define("plugin/library/datasets",["utils/utils"],function(e){return Backbone.Collection.extend({list:{},cache:{},initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e){e.groups?this._get_blocks(e):this._get_dataset(e.id,e.success,e.error)},_get_blocks:function(e){function h(i){c._get(i,function(){var s=!1;for(var o in e.groups){destination_group=e.groups[o],source_group=i.groups[o],destination_group.values||(destination_group.values=[]),destination_group.values=destination_group.values.concat(source_group.values);if(source_group.values.length==0){s=!0;break}}if(++l<a&&!s){n&&n(parseInt(l/a*100));var u=i.start+r;i=$.extend(!0,f,{start:u}),h(i)}else t()})}var t=e.success,n=e.progress,r=this.app.config.get("query_limit"),i=this.app.config.get("query_timeout"),s=e.start||0,o=s+e.query_limit||s+this.app.config.get("query_limit"),u=Math.abs(o-s);if(u<=0){console.debug("FAILED - Datasets::request() - Invalid query range.");return}var a=Math.ceil(u/r)||1,f=$.extend(!0,{},e),l=0,c=this,p=$.extend(!0,f,{start:s});this._get_dataset(e.id,function(){h(p)})},_get_dataset:function(t,n,r){var i=this.list[t];if(i){n(i);return}var s=this;e.request("GET",config.root+"api/datasets/"+t,{},function(e){switch(e.state){case"error":r&&r(e);break;default:s.list[t]=e,n(e)}})},_block_id:function(e,t){return e.id+"_"+e.start+"_"+e.start+this.app.config.get("query_limit")+"_"+t},_get:function(e,t){e.start=e.start||0;var n=[],r={},i=0;for(var s in e.groups){var o=e.groups[s];for(var u in o.columns){var a=o.columns[u].index,f=this._block_id(e,a);if(this.cache[f]||a==="auto"||a==="zero")continue;!r[a]&&a!==undefined&&(r[a]=i,n.push(a),i++)}}if(n.length==0){this._fill_from_cache(e),t(e);return}var l={dataset_id:e.id,start:e.start,columns:n},c=this;this._fetch(l,function(r){for(var i in r){var s=n[i],o=c._block_id(e,s);c.cache[o]=r[i]}c._fill_from_cache(e),t(e)})},_fill_from_cache:function(e){var t=e.start;console.debug("Datasets::_fill_from_cache() - Filling request from cache at "+t+".");var n=0;for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s],u=this._block_id(e,o.index),a=this.cache[u];a&&(n=Math.max(n,a.length))}}n==0&&console.debug("Datasets::_fill_from_cache() - Reached data range limit.");for(var r in e.groups){var i=e.groups[r];i.values=[];for(var f=0;f<n;f++)i.values[f]={x:parseInt(f)+t}}for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s];switch(o.index){case"auto":for(var f=0;f<n;f++){var l=i.values[f];l[s]=parseInt(f)+t}break;case"zero":for(var f=0;f<n;f++){var l=i.values[f];l[s]=0}break;default:var u=this._block_id(e,o.index),a=this.cache[u];for(var f=0;f<n;f++){var l=i.values[f],c=a[f];isNaN(c)&&!o.is_label&&(c=0),l[s]=c}}}}},_fetch:function(t,n){var r=t.start?t.start:0,i=this.app.config.get("query_limit"),s=0;t.columns&&(s=t.columns.length,console.debug("Datasets::_fetch() - Fetching "+s+" column(s) at "+r+".")),s==0&&console.debug("Datasets::_fetch() - No columns requested");var o="";for(var u in t.columns)o+=t.columns[u]+",";o=o.substring(0,o.length-1);var a=this;e.request("GET",config.root+"api/datasets/"+t.dataset_id,{data_type:"raw_data",provider:"dataset-column",limit:i,offset:r,indeces:o},function(e){var t=new Array(s);for(var r=0;r<s;r++)t[r]=[];for(var r in e.data){var i=e.data[r];for(var o in i){var u=i[o];u!==undefined&&u!=2147483647&&t[o].push(u)}}console.debug("Datasets::_fetch() - Fetching complete."),n(t)})}})}),define("plugin/models/group",[],function(){return Backbone.Model.extend({defaults:{key:"Data label",date:""},reset:function(){this.clear({silent:!0}).set(this.defaults),this.trigger("reset",this)}})}),define("plugin/models/groups",["plugin/models/group"],function(e){return Backbone.Collection.extend({model:e})}),define("plugin/models/chart",["plugin/models/groups"],function(e){return Backbone.Model.extend({defaults:{id:null,title:"",type:"",date:null,state:"",state_info:"",modified:!1,dataset_id:"",dataset_id_job:""},initialize:function(t){this.groups=new e,this.settings=new Backbone.Model},reset:function(){this.clear({silent:!0}).set(this.defaults),this.groups.reset(),this.settings.clear(),this.trigger("reset",this)},copy:function(e){var t=this;t.clear({silent:!0}).set(this.defaults),t.set(e.attributes),t.settings=e.settings.clone(),t.groups.reset(),e.groups.each(function(e){t.groups.add(e.clone())}),t.trigger("change",t)},state:function(e,t){this.set("state",e),this.set("state_info",t),this.trigger("set:state"),console.debug("Chart:state() - "+t+" ("+e+")")}})});var Visualization=Backbone.Model.extend({defaults:{config:{}},urlRoot:function(){var e="/api/visualizations";return window.galaxy_config&&galaxy_config.root?galaxy_config.root+e:e},initialize:function(e){_.isObject(e.config)&&_.isObject(this.defaults.config)&&_.defaults(e.config,this.defaults.config),this._setUpListeners()},_setUpListeners:function(){},set:function(e,t){if(e==="config"){var n=this.get("config");_.isObject(n)&&(t=_.extend(_.clone(n),t))}return Backbone.Model.prototype.set.call(this,e,t),this},toString:function(){var e=this.get("id")||"";return this.get("title")&&(e+=":"+this.get("title")),"Visualization("+e+")"}}),VisualizationCollection=Backbone.Collection.extend({model:Visualization,url:function(){return galaxy_config.root+"api/visualizations"},initialize:function(e,t){t=t||{}},set:function(e,t){var n=this;e=_.map(e,function(e){var t=n.get(e.id);if(!t)return e;var r=t.toJSON();return _.extend(r,e),r}),Backbone.Collection.prototype.set.call(this,e,t)},toString:function(){return["VisualizationCollection(",[this.historyId,this.length].join(),")"].join("")}});define("mvc/visualization/visualization-model",function(){}),define("plugin/library/storage",["utils/utils","plugin/models/chart","plugin/models/group","mvc/visualization/visualization-model"],function(e,t,n){return Backbone.Model.extend({vis:null,initialize:function(e){this.app=e,this.chart=this.app.chart,this.options=this.app.options,this.id=this.options.id,this.vis=new Visualization({type:"charts",config:{dataset_id:this.options.config.dataset_id,chart_dict:{}}}),this.id&&(this.vis.id=this.id);var t=this.options.config.chart_dict;t&&(this.vis.get("config").chart_dict=t)},save:function(){var e=this.app.chart;this.vis.get("config").chart_dict={};var t=e.get("title");t!=""&&this.vis.set("title",t);var n={attributes:e.attributes,settings:e.settings.attributes,groups:[]};e.groups.each(function(e){n.groups.push(e.attributes)}),this.vis.get("config").chart_dict=n;var r=this;this.vis.save().fail(function(e,t,n){console.error(e,t,n)}).then(function(e){e&&e.id&&(r.id=e.id)})},load:function(){var e=this.vis.get("config").chart_dict;if(!e.attributes)return!1;var t=e.attributes.type;if(!t)return console.debug("Storage::load() - Chart type not provided. Invalid format."),!1;var r=this.app.types.get(t);if(!r)return console.debug("Storage::load() - Chart type not supported. Please re-configure the chart. Resetting chart."),!1;console.debug("Storage::load() - Loading chart type "+t+"."),this.chart.definition=r,this.chart.set(e.attributes),this.chart.state("ok","Loading saved visualization..."),this.chart.settings.set(e.settings);for(var i in e.groups)this.chart.groups.add(new n(e.groups[i]));return this.chart.set("modified",!1),!0}})}),define("plugin/library/deferred",["utils/utils"],function(e){return Backbone.Model.extend({queue:[],process:{},counter:0,initialize:function(){this.on("refresh",function(){for(var e in this.queue)if(this.counter==0){var t=this.queue[e];this.queue.splice(e,1),t()}})},execute:function(e){this.queue.push(e),this.trigger("refresh")},register:function(){var t=e.uuid();return this.process[t]=!0,this.counter++,console.debug("Deferred:register() - Registering "+t),t},done:function(e){this.process[e]&&(delete this.process[e],this.counter--,console.debug("Deferred:done() - Unregistering "+e),this.trigger("refresh"))},ready:function(){return this.counter==0}})}),define("plugin/views/viewport",["mvc/ui/ui-portlet","plugin/library/ui","utils/utils"],function(e,t,n){return Backbone.View.extend({container_list:[],canvas_list:[],initialize:function(e,t){this.app=e,this.chart=this.app.chart,this.options=n.merge(t,this.optionsDefault),this.setElement($(this._template())),this._fullscreen(this.$el,100),this._createContainer("div");var r=this;this.chart.on("redraw",function(){r._draw(r.chart)}),this.chart.on("set:state",function(){var e=r.$el.find("#info"),t=r.$el.find(".charts-viewport-container"),n=e.find("#icon");n.removeClass(),e.show(),e.find("#text").html(r.chart.get("state_info"));var i=r.chart.get("state");switch(i){case"ok":e.hide(),t.show();break;case"failed":n.addClass("icon fa fa-warning"),t.hide();break;default:n.addClass("icon fa fa-spinner fa-spin"),t.show()}})},show:function(){this.$el.show()},hide:function(){this.$el.hide()},_fullscreen:function(e,t){e.css("height",$(window).height()-t),$(window).resize(function(){e.css("height",$(window).height()-t)})},_createContainer:function(e,t){t=t||1;for(var n in this.container_list)this.container_list[n].remove();this.container_list=[],this.canvas_list=[];for(var n=0;n<t;n++){var r=$(this._templateContainer(e,parseInt(100/t)));this.$el.append(r),this.container_list[n]=r,this.canvas_list[n]=r.find(".charts-viewport-canvas").attr("id")}},_draw:function(e){var t=this,n=this.app.deferred.register(),r=e.get("type");this.chart_definition=e.definition;var i=1;e.settings.get("use_panels")==="true"&&(i=e.groups.length),this._createContainer(this.chart_definition.tag,i),e.state("wait","Please wait...");if(!this.chart_definition.execute||this.chart_definition.execute&&e.get("modified"))this.app.jobs.cleanup(e),e.set("modified",!1);var t=this;require(["plugin/charts/"+this.app.chartPath(r)+"/wrapper"],function(r){if(t.chart_definition.execute)t.app.jobs.request(e,t._defaultSettingsString(e),t._defaultRequestString(e),function(){var i=new r(t.app,{process_id:n,chart:e,request_dictionary:t._defaultRequestDictionary(e),canvas_list:t.canvas_list})},function(){this.app.deferred.done(n)});else var i=new r(t.app,{process_id:n,chart:e,request_dictionary:t._defaultRequestDictionary(e),canvas_list:t.canvas_list})})},_defaultRequestString:function(e){var t="",n=0,r=this;return e.groups.each(function(e){n++;for(var i in r.chart_definition.columns)t+=i+"_"+n+":"+(parseInt(e.get(i))+1)+", "}),t.substring(0,t.length-2)},_defaultSettingsString:function(e){var t="";for(key in e.settings.attributes)t+=key+":"+e.settings.get(key)+", ";return t.substring(0,t.length-2)},_defaultRequestDictionary:function(e){var t={groups:[]};this.chart_definition.execute?t.id=e.get("dataset_id_job"):t.id=e.get("dataset_id");var r=0,i=this;return e.groups.each(function(e){var s={};for(var o in i.chart_definition.columns){var u=i.chart_definition.columns[o];s[o]=n.merge({index:e.get(o)},u)}t.groups.push({key:++r+":"+e.get("key"),columns:s})}),t},_template:function(){return'<div class="charts-viewport"><div id="info" class="info"><span id="icon" class="icon"/><span id="text" class="text" /></div></div>'},_templateContainer:function(e,t){return'<div class="charts-viewport-container" style="width:'+t+'%;">'+'<div id="menu"/>'+"<"+e+' id="'+n.uuid()+'" class="charts-viewport-canvas">'+"</div>"}})}),define("plugin/library/screenshot",["libs/underscore"],function(e){function t(e){e.$el.find("svg").length>0?r(e):n(e)}function n(e){try{var t=e.$el.find(".jqplot-target"),n=t.jqplotToImageStr({});n&&(window.location.href=n.replace("image/png","image/octet-stream"))}catch(r){console.debug("FAILED - Screenshot::_fromCanvas() - "+r),e.error&&e.error("Please reduce your chart to a single panel and try again.")}}function r(e){var t=e.$el,n=e.url,r=e.name,s=new XMLSerializer,o=document.createElement("canvas"),u=$(o),a=t.find("svg").length,f=t.find("svg").first(),l=parseInt(f.css("height")),c=parseInt(f.css("width"));u.attr("width",c*a),u.attr("height",l),(!o.getContext||!o.getContext("2d"))&&alert("Your browser doesn't support this feature, please use a modern browser");var h=o.getContext("2d"),p=0;t.find("svg").each(function(){var e=$(this);e.attr({version:"1.1",xmlns:"http://www.w3.org/2000/svg",width:c,height:l});var t=s.serializeToString(this);h.drawSvg(t,p,0,c,l),p+=c}),window.location.href=i(o,o.getContext("2d"),"white").replace("image/png","image/octet-stream")}function i(e,t,n){var r=e.width,i=e.height,s;if(n){s=t.getImageData(0,0,r,i);var o=t.globalCompositeOperation;t.globalCompositeOperation="destination-over",t.fillStyle=n,t.fillRect(0,0,r,i)}var u=e.toDataURL("image/png");return n&&(t.clearRect(0,0,r,i),t.putImageData(s,0,0),t.globalCompositeOperation=o),u}function s(e){window.location.href="data:none/none;base64,"+btoa(a(e).string)}function o(e){for(var t in document.styleSheets){var n=document.styleSheets[t],r=n.cssRules;if(r)for(var i=0,s=r.length;i<s;i++)try{e.find(r[i].selectorText).each(function(e,t){t.style.cssText+=r[i].style.cssText})}catch(o){}}}function u(e){var t=a(e),n={filename:name||"chart",type:"application/pdf",height:t.height,width:t.width,scale:2,svg:t.string},r=$("body"),i=r.find("#viewport-form");i.length===0&&(i=$("<form>",{id:"viewport-form",method:"post",action:"http://export.highcharts.com/",display:"none"}),r.append(i)),i.empty();for(name in n){var s=$("<input/>",{type:"hidden",name:name,value:n[name]});i.append(s)}try{i.submit()}catch(o){console.log(o)}}function a(e){if(e.$el.find("svg").length==0&&e.error){e.error("No SVG found. This chart type does not support SVG/PDF export.");return}var t=e.$el,n=t.find("svg").length,r=parseInt(t.find("svg").first().css("height")),i=parseInt(t.find("svg").first().css("width")),s=new XMLSerializer,u=$("<svg/>");u.attr({version:"1.1",xmlns:"http://www.w3.org/2000/svg",width:i*n,height:r});var a="",f=0;return t.find("svg").each(function(){var e=$(this).clone();o(e);var t=$('<g transform="translate('+f+', 0)">');t.append(e.find("g").first()),u.append(t),f+=i}),{string:s.serializeToString(u[0]),height:r,width:i}}return{createPNG:t,createSVG:s,createPDF:u}}),define("plugin/views/viewer",["utils/utils","plugin/library/ui","mvc/ui/ui-portlet","plugin/views/viewport","plugin/library/screenshot"],function(e,t,n,r,i){return Backbone.View.extend({initialize:function(e,s){this.app=e,this.chart=this.app.chart,this.viewport_view=new r(e);var o=this;this.message=new t.Message;var u=new t.ButtonMenu({icon:"fa-camera",title:"Screenshot",tooltip:"Download as PNG, SVG or PDF file"});u.addMenu({id:"button-png",title:"Save as PNG",icon:"fa-file",onclick:function(){o._wait(o.chart,function(){i.createPNG({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}),u.addMenu({id:"button-svg",title:"Save as SVG",icon:"fa-file-text-o",onclick:function(){o._wait(o.chart,function(){i.createSVG({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}),u.addMenu({id:"button-png",title:"Save as PDF",icon:"fa-file-o",onclick:function(){o.app.modal.show({title:"Send chart data for PDF creation",body:"Galaxy does not provide integrated PDF export scripts. You may click 'Continue' to create the PDF by using a 3rd party service (https://export.highcharts.com)",buttons:{Cancel:function(){o.app.modal.hide()},Continue:function(){o.app.modal.hide(),o._wait(o.chart,function(){i.createPDF({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}})}}),this.portlet=new n.View({icon:"fa-bar-chart-o",title:"Viewport",scrollable:!1,operations:{edit_button:new t.ButtonIcon({icon:"fa-edit",tooltip:"Customize this chart",title:"Editor",onclick:function(){o._wait(o.chart,function(){o.app.go("editor")})}}),picture_button_menu:u}}),this.portlet.append(this.message.$el),this.portlet.append(this.viewport_view.$el),this.setElement(this.portlet.$el);var o=this;this.chart.on("change:title",function(){o._refreshTitle()})},show:function(){this.$el.show(),$(window).trigger("resize")},hide:function(){this.$el.hide()},_refreshTitle:function(){var e=this.chart.get("title");this.portlet.title(e)},_wait:function(e,t){this.app.deferred.ready()?t():this.message.update({message:"Your chart is currently being processed. Please wait and try again."})}})}),define("mvc/ui/ui-tabs",["utils/utils"],function(e){var t=Backbone.View.extend({optionsDefault:{title_new:"",operations:null,onnew:null},initialize:function(t){this.visible=!1,this.$nav=null,this.$content=null,this.first_tab=null,this.options=e.merge(t,this.optionsDefault);var n=$(this._template(this.options));this.$nav=n.find(".tab-navigation"),this.$content=n.find(".tab-content"),this.setElement(n),this.list={};var r=this;this.options.operations&&$.each(this.options.operations,function(e,t){t.$el.prop("id",e),r.$nav.find(".operations").append(t.$el)});if(this.options.onnew){var i=$(this._template_tab_new(this.options));this.$nav.append(i),i.tooltip({title:"Add a new tab",placement:"bottom",container:r.$el}),i.on("click",function(e){i.tooltip("hide"),r.options.onnew()})}},add:function(e){var t=this,n=e.id,r=$(this._template_tab(e)),i=$(this._template_tab_content(e));this.list[n]=e.ondel?!0:!1,this.options.onnew?this.$nav.find("#new-tab").before(r):this.$nav.append(r),i.append(e.$el),this.$content.append(i),_.size(this.list)==1&&(r.addClass("active"),i.addClass("active"),this.first_tab=n);if(e.ondel){var s=r.find("#delete");s.tooltip({title:"Delete this tab",placement:"bottom",container:t.$el}),s.on("click",function(){return s.tooltip("destroy"),t.$el.find(".tooltip").remove(),e.ondel(),!1})}r.on("click",function(r){r.preventDefault(),e.onclick?e.onclick():t.show(n)})},del:function(e){this.$el.find("#tab-"+e).remove(),this.$el.find("#tab-content-"+e).remove(),this.first_tab==e&&(this.first_tab=null),this.first_tab!=null&&this.show(this.first_tab)},delRemovable:function(){for(var e in this.list)this.list[e]&&this.del(e)},show:function(e){this.$el.fadeIn("fast"),this.visible=!0,e&&(this.$el.find(".tab-element").removeClass("active"),this.$el.find(".tab-pane").removeClass("active"),this.$el.find("#tab-"+e).addClass("active"),this.$el.find("#tab-content-"+e).addClass("active"))},hide:function(){this.$el.fadeOut("fast"),this.visible=!1},hideOperation:function(e){this.$nav.find("#"+e).hide()},showOperation:function(e){this.$nav.find("#"+e).show()},setOperation:function(e,t){var n=this.$nav.find("#"+e);n.off("click"),n.on("click",t)},title:function(e,t){var n=this.$el.find("#tab-title-text-"+e);return t&&n.html(t),n.html()},_template:function(e){return'<div class="ui-tabs tabbable tabs-left"><ul id="tab-navigation" class="tab-navigation nav nav-tabs"><div class="operations" style="float: right; margin-bottom: 4px;"></div></ul><div id="tab-content" class="tab-content"/></div>'},_template_tab_new:function(e){return'<li id="new-tab"><a href="javascript:void(0);"><i class="ui-tabs-add fa fa-plus-circle"/>'+e.title_new+"</a>"+"</li>"},_template_tab:function(e){var t='<li id="tab-'+e.id+'" class="tab-element">'+'<a id="tab-title-link-'+e.id+'" title="" href="#tab-content-'+e.id+'" data-original-title="">'+'<span id="tab-title-text-'+e.id+'">'+e.title+"</span>";return e.ondel&&(t+='<i id="delete" class="ui-tabs-delete fa fa-minus-circle"/>'),t+="</a></li>",t},_template_tab_content:function(e){return'<div id="tab-content-'+e.id+'" class="tab-pane"/>'}});return{View:t}}),define("plugin/library/ui-table",["utils/utils"],function(e){var t=Backbone.View.extend({row:null,row_count:0,optionsDefault:{content:"No content available.",onchange:null,ondblclick:null,onconfirm:null,cls:""},events:{click:"_onclick",dblclick:"_ondblclick"},initialize:function(t){this.options=e.merge(t,this.optionsDefault);var n=$(this._template(t));this.$thead=n.find("thead"),this.$tbody=n.find("tbody"),this.$tmessage=n.find("tmessage"),this.setElement(n),this.row=$("<tr></tr>")},addHeader:function(e){var t=$("<th></th>");t.append(e),this.row.append(t)},appendHeader:function(){this.$thead.append(this.row),this.row=$("<tr></tr>")},add:function(e,t,n){var r=$("<td></td>");t&&r.css("width",t),n&&r.css("text-align",n),r.append(e),this.row.append(r)},append:function(e){this._commit(e)},prepend:function(e){this._commit(e,!0)},get:function(e){return this.$el.find("#"+e)},del:function(e){var t=this.$tbody.find("#"+e);t.length>0&&(t.remove(),this.row_count--,this._refresh())},delAll:function(){this.$tbody.empty(),this.row_count=0,this._refresh()},value:function(e){this.before=this.$tbody.find(".current").attr("id"),e!==undefined&&(this.$tbody.find("tr").removeClass("current"),e&&this.$tbody.find("#"+e).addClass("current"));var t=this.$tbody.find(".current").attr("id");return t===undefined?null:(t!=this.before&&this.options.onchange&&this.options.onchange(e),t)},size:function(){return this.$tbody.find("tr").length},_commit:function(e,t){this.del(e),this.row.attr("id",e),t?this.$tbody.prepend(this.row):this.$tbody.append(this.row),this.row=$("<tr></tr>"),this.row_count++,this._refresh()},_onclick:function(e){var t=this.value(),n=$(e.target).closest("tr").attr("id");n!=""&&n&&t!=n&&(this.options.onconfirm?this.options.onconfirm(n):this.value(n))},_ondblclick:function(e){var t=this.value();t&&this.options.ondblclick&&this.options.ondblclick(t)},_refresh:function(){this.row_count==0?this.$tmessage.show():this.$tmessage.hide()},_template:function(e){return'<div><table class="ui-table '+e.cls+'">'+"<thead></thead>"+'<tbody style="cursor: pointer;"></tbody>'+"</table>"+"<tmessage>"+e.content+"</tmessage>"+"<div>"}});return{View:t}}),define("plugin/views/group",["plugin/library/ui-table","plugin/library/ui","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(r,i){this.app=r;var s=this;this.chart=this.app.chart,this.group=i.group,this.group_key=new t.Input({placeholder:"Data label",onchange:function(e){s.group.set("key",e)}}),this.table=new e.View({content:"No data column."});var o=$("<div/>");o.append(n.wrap((new t.Label({title:"Provide a label:"})).$el)),o.append(n.wrap(this.group_key.$el)),o.append(n.wrap((new t.Label({title:"Select columns:"})).$el)),o.append(n.wrap(this.table.$el)),this.setElement(o);var s=this;this.chart.on("change:dataset_id",function(){s._refreshTable()}),this.chart.on("change:type",function(){s._refreshTable()}),this.group.on("change:key",function(){s._refreshGroupKey()}),this.group.on("change",function(){s._refreshGroup()}),this._refreshTable(),this._refreshGroupKey(),this._refreshGroup()},_refreshTable:function(){var e=this.chart.get("dataset_id"),n=this.chart.get("type");if(!e||!n)return;var r=this,i=this.chart.definition;this.table.delAll();var s={};for(var o in i.columns){var u=i.columns[o];if(!u){console.debug("Group::_refreshTable() - Skipping column definition.");continue}var a=new t.Select.View({id:"select_"+o,wait:!0}),f=u.title;u.is_unique&&(f+=" (all data labels)"),this.table.add(f,"25%"),this.table.add(a.$el),this.table.append(o),s[o]=a}this.chart.state("wait","Loading metadata...");var l=this.app.deferred.register(),c={id:e,success:function(e){for(var t in s)r._addRow(t,e,s,i.columns[t]);r.chart.state("ok","Metadata initialized..."),r.app.deferred.done(l)}};this.app.datasets.request(c)},_addRow:function(e,t,n,r){var i=this,s=r.is_label,o=r.is_auto,u=r.is_numeric,a=r.is_unique,f=r.is_zero,l=[],c=n[e];o&&l.push({label:"Column: Row Number",value:"auto"}),f&&l.push({label:"Column: None",value:"zero"});var h=t.metadata_column_types;for(var p in h){var d=!1;h[p]=="int"||h[p]=="float"?d=u:d=s,d&&l.push({label:"Column: "+(parseInt(p)+1)+" ["+h[p]+"]",value:p})}c.update(l),a&&this.chart.groups.first()&&this.group.set(e,this.chart.groups.first().get(e));if(!c.exists(this.group.get(e))){var v=c.first();console.debug('Group()::_addRow() - Switching model value from "'+this.group.get(e)+'" to "'+v+'".'),this.group.set(e,v)}c.value(this.group.get(e)),this.group.off("change:"+e),this.group.on("change:"+e,function(){c.value(i.group.get(e))}),c.setOnChange(function(t){a?i.chart.groups.each(function(n){n.set(e,t)}):i.group.set(e,t),i.chart.set("modified",!0)}),c.show()},_refreshGroup:function(){this.group.set("date",n.time())},_refreshGroupKey:function(){var e=this.group.get("key");e===undefined&&(e=""),this.group_key.value(e)}})}),define("plugin/library/ui-table-form",["plugin/library/ui-table","plugin/library/ui","utils/utils"],function(e,t,n){var r=Backbone.View.extend({optionsDefault:{title:"",content:"",mode:""},list:[],initialize:function(r,i){this.app=r,this.options=n.merge(i,this.optionsDefault),this.table_title=new t.Label({title:this.options.title}),this.table=new e.View({content:this.options.content});var s=$('<div class="ui-table-form"/>');this.options.title&&s.append(n.wrap(this.table_title.$el)),s.append(n.wrap(this.table.$el)),this.setElement(s)},title:function(e){this.table_title.title(e)},update:function(e,t){this.table.delAll(),this.list=[];for(var n in e)this._add(e[n].id||n,e[n],t);for(var n in this.list)this.list[n].trigger("change")},_add:function(e,n,r){var i=this,s=null,o=n.type;switch(o){case"text":s=new t.Input({id:"field-"+e,placeholder:n.placeholder,value:r.get(e),onchange:function(t){r.set(e,t)}});break;case"radiobutton":s=new t.RadioButton({id:"field-"+e,data:n.data,value:r.get(e),onchange:function(t){r.set(e,t);var s=_.findWhere(n.data,{value:t});if(s&&s.operations){var o=s.operations;for(var u in o.show){var a=o.show[u];i.table.get(a).show()}for(var u in o.hide){var a=o.hide[u];i.table.get(a).hide()}}}});break;case"select":s=new t.Select.View({id:"field-"+e,data:n.data,value:r.get(e),onchange:function(t){r.set(e,t);var s=_.findWhere(n.data,{value:t});if(s&&s.operations){var o=s.operations;for(var u in o.show){var a=o.show[u];i.table.get(a).show()}for(var u in o.hide){var a=o.hide[u];i.table.get(a).hide()}}}});break;case"dataset":s=new t.Select.View({id:"field-"+e,onchange:function(t){r.set(e,t)}}),i.app.datasets.on("all",function(){var t=[];i.app.datasets.each(function(e){e.get("datatype_id")==n.data&&t.push({value:e.get("id"),label:e.get("name")})}),s.update(t),r.get(e)||r.set(e,s.first()),s.value(r.get(e))}),i.app.datasets.trigger("all.datasets");break;case"textarea":s=new t.Textarea({id:"field-"+e,onchange:function(){r.set(e,s.value())}});break;case"separator":s=$("<div/>");break;default:s=new t.Input({id:"field-"+e,placeholder:n.placeholder,type:n.type,onchange:function(){r.set(e,s.value())}})}if(o!="separator"){r.get(e)||r.set(e,n.init),s.value(r.get(e)),this.list[e]=s;var u=$("<div/>");u.append(s.$el),n.info&&u.append('<div class="ui-table-form-info">'+n.info+"</div>"),this.options.style=="bold"?(this.table.add((new t.Label({title:n.title,cls:"form-label"})).$el),this.table.add(u)):(this.table.add('<span class="ui-table-form-title">'+n.title+"</span>","25%"),this.table.add(u))}else this.table.add('<div class="ui-table-form-separator">'+n.title+":<div/>"),this.table.add($("<div/>"));this.table.append(e),n.hide&&this.table.get(e).hide()}});return{View:r}}),define("plugin/views/settings",["plugin/library/ui","plugin/library/ui-table-form","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(e,n){this.app=e;var r=this;this.chart=this.app.chart,this.form=new t.View(e,{content:"This chart type does not provide any options."}),this.setElement(this.form.$el);var r=this;this.chart.on("change",function(){r._refresh()})},_refresh:function(){var e=this.chart.definition;if(!e)return;this.form.title(e.category+" - "+e.title+":"),this.form.update(e.settings,this.chart.settings)}})}),define("plugin/views/types",["utils/utils","plugin/library/ui"],function(e,t){return Backbone.View.extend({optionsDefault:{onchange:null,ondblclick:null},events:{click:"_onclick",dblclick:"_ondblclick"},initialize:function(n,r){var i=this;this.app=n,this.options=e.merge(r,this.optionsDefault);var s=$('<div class="charts-grid"/>');s.append(e.wrap((new t.Label({title:"How many data points would you like to analyze?"})).$el)),this.library=new t.RadioButton({data:[{label:"Few (<500)",value:"small"},{label:"Some (<10k)",value:"medium"},{label:"Many (>10k)",value:"large"}],onchange:function(e){i._filter(e)}}),s.append(e.wrap(this.library.$el)),this.setElement(s),this._render(),this.library.value("small")},value:function(e){var t=this.$el.find(".current").attr("id");e!==undefined&&(this.$el.find(".current").removeClass("current"),this.$el.find("#"+e).addClass("current"));var n=this.$el.find(".current").attr("id");return n===undefined?null:(n!=t&&this.options.onchange&&this.options.onchange(e),n)},_filter:function(e){this.$el.find(".header").hide();var t=this.app.types.attributes;for(var n in t){var r=t[n],i=this.$el.find("#"+n),s=this.$el.find("#types-header-"+this.categories_index[r.category]),o=r.keywords||"";o.indexOf(e)>=0?(i.show(),s.show()):i.hide()}},_render:function(){this.categories={},this.categories_index={};var t=0,n=this.app.types.attributes;for(var r in n){var i=n[r],s=i.category;this.categories[s]||(this.categories[s]={},this.categories_index[s]=t++),this.categories[s][r]=i}for(var s in this.categories){var o=$('<div style="clear: both;"/>');o.append(e.wrap(this._template_header({id:"types-header-"+this.categories_index[s],title:s})));for(var r in this.categories[s]){var i=this.categories[s][r],u=i.title+" ("+i.library+")";i.zoomable&&(u='<span class="fa fa-search-plus"/>'+u),o.append(e.wrap(this._template_item({id:r,title:u,url:config.app_root+"charts/"+this.app.chartPath(r)+"/logo.png"})))}this.$el.append(e.wrap(o))}},_onclick:function(e){var t=this.value(),n=$(e.target).closest(".item").attr("id");n!=""&&n&&t!=n&&this.value(n)},_ondblclick:function(e){var t=this.value();t&&this.options.ondblclick&&this.options.ondblclick(t)},_template_header:function(e){return'<div id="'+e.id+'" class="header">'+"• "+e.title+"<div>"},_template_item:function(e){return'<div id="'+e.id+'" class="item">'+'<img class="image" src="'+e.url+'">'+'<div class="title">'+e.title+"</div>"+"<div>"}})}),define("plugin/views/editor",["mvc/ui/ui-tabs","plugin/library/ui","mvc/ui/ui-portlet","utils/utils","plugin/models/chart","plugin/models/group","plugin/views/group","plugin/views/settings","plugin/views/types"],function(e,t,n,r,i,s,o,u,a){return Backbone.View.extend({initialize:function(i,s){var o=this;this.app=i,this.chart=this.app.chart,this.message=new t.Message,this.portlet=new n.View({icon:"fa-bar-chart-o",title:"Editor",operations:{save:new t.ButtonIcon({icon:"fa-save",tooltip:"Draw Chart",title:"Draw",onclick:function(){o._saveChart()}}),back:new t.ButtonIcon({icon:"fa-caret-left",tooltip:"Return to Viewer",title:"Cancel",onclick:function(){o.app.go("viewer"),o.app.storage.load()}})}}),this.types=new a(i,{onchange:function(e){var t=o.app.types.get(e);t||console.debug("FAILED - Editor::onchange() - Chart type not supported."),o.chart.definition=t,o.chart.settings.clear(),o.chart.set({type:e}),o.chart.set("modified",!0),console.debug("Editor::onchange() - Switched chart type.")},ondblclick:function(e){o._saveChart()}}),this.tabs=new e.View({title_new:"Add Data",onnew:function(){var e=o._addGroupModel();o.tabs.show(e.id)}}),this.title=new t.Input({placeholder:"Chart title",onchange:function(){o.chart.set("title",o.title.value())}});var f=$("<div/>");f.append(r.wrap((new t.Label({title:"Provide a chart title:"})).$el)),f.append(r.wrap(this.title.$el)),f.append(r.wrap(this.types.$el)),this.tabs.add({id:"main",title:"Start",$el:f}),this.settings=new u(this.app),this.tabs.add({id:"settings",title:"Configuration",$el:this.settings.$el}),this.portlet.append(this.message.$el),this.portlet.append(this.tabs.$el),this.setElement(this.portlet.$el),this.tabs.hideOperation("back");var o=this;this.chart.on("change:title",function(e){o._refreshTitle()}),this.chart.on("change:type",function(e){o.types.value(e.get("type"))}),this.chart.on("reset",function(e){o._resetChart()}),this.app.chart.on("redraw",function(e){o.portlet.showOperation("back")}),this.app.chart.groups.on("add",function(e){o._addGroup(e)}),this.app.chart.groups.on("remove",function(e){o._removeGroup(e)}),this.app.chart.groups.on("reset",function(e){o._removeAllGroups()}),this.app.chart.groups.on("change:key",function(e){o._refreshGroupKey()}),this._resetChart()},show:function(){this.$el.show()},hide:function(){this.$el.hide()},_refreshTitle:function(){var e=this.chart.get("title");this.portlet.title(e),this.title.value(e)},_refreshGroupKey:function(){var e=this,t=0;this.chart.groups.each(function(n){var r=n.get("key","");r==""&&(r="Data label"),e.tabs.title(n.id,++t+": "+r)})},_addGroupModel:function(){var e=new s({id:r.uuid()});return this.chart.groups.add(e),e},_addGroup:function(e){var t=this,n=new o(this.app,{group:e});this.tabs.add({id:e.id,$el:n.$el,ondel:function(){t.chart.groups.remove(e.id)}}),this._refreshGroupKey(),this.chart.set("modified",!0)},_removeGroup:function(e){this.tabs.del(e.id),this._refreshGroupKey(),this.chart.set("modified",!0)},_removeAllGroups:function(e){this.tabs.delRemovable()},_resetChart:function(){this.chart.set("id",r.uuid()),this.chart.set("type","nvd3_bar"),this.chart.set("dataset_id",this.app.options.config.dataset_id),this.chart.set("title","New Chart"),this.portlet.hideOperation("back")},_saveChart:function(){this.chart.set({type:this.types.value(),title:this.title.value(),date:r.time()});if(this.chart.groups.length==0){this.message.update({message:"Please select data columns before drawing the chart."});var e=this._addGroupModel();this.tabs.show(e.id);return}var t=this,n=!0,i=this.chart.definition;this.chart.groups.each(function(e){if(!n)return;for(var r in i.columns)if(e.attributes[r]=="null"){t.message.update({status:"danger",message:"This chart type requires column types not found in your tabular file."}),t.tabs.show(e.id),n=!1;return}});if(!n)return;this.app.go("viewer");var t=this;this.app.deferred.execute(function(){t.app.storage.save(),t.chart.trigger("redraw")})}})}),define("plugin/models/config",[],function(){return Backbone.Model.extend({defaults:{query_limit:500,query_timeout:100}})}),define("plugin/charts/forms/default",[],function(){return{title:"",category:"",library:"",tag:"",keywords:"",query_limit:0,settings:{separator_x:{title:"X axis",type:"separator"},x_axis_label:{title:"Axis label",info:"Provide a label for the axis.",type:"text",init:"X-axis",placeholder:"Axis label"},x_axis_type:{title:"Axis value type",info:"Select the value type of the axis.",type:"select",init:"auto",data:[{label:"-- Do not show values --",value:"hide",operations:{hide:["x_axis_precision"]}},{label:"Auto",value:"auto",operations:{hide:["x_axis_precision"]}},{label:"Float",value:"f",operations:{show:["x_axis_precision"]}},{label:"Exponent",value:"e",operations:{show:["x_axis_precision"]}},{label:"Integer",value:"d",operations:{hide:["x_axis_precision"]}},{label:"Percentage",value:"p",operations:{show:["x_axis_precision"]}},{label:"SI-prefix",value:"s",operations:{hide:["x_axis_precision"]}}]},x_axis_precision:{title:"Axis tick format",info:"Select the tick format for the axis.",type:"select",init:"1",data:[{label:"0.00001",value:"5"},{label:"0.0001",value:"4"},{label:"0.001",value:"3"},{label:"0.01",value:"2"},{label:"0.1",value:"1"},{label:"1",value:"0"}]},separator_y:{title:"Y axis",type:"separator"},y_axis_label:{title:"Axis label",info:"Provide a label for the axis.",type:"text",init:"Y-axis",placeholder:"Axis label"},y_axis_type:{title:"Axis value type",info:"Select the value type of the axis.",type:"select",init:"auto",data:[{label:"-- Do not show values --",value:"hide",operations:{hide:["y_axis_precision"]}},{label:"Auto",value:"auto",operations:{hide:["y_axis_precision"]}},{label:"Float",value:"f",operations:{show:["y_axis_precision"]}},{label:"Exponent",value:"e",operations:{show:["y_axis_precision"]}},{label:"Integer",value:"d",operations:{hide:["y_axis_precision"]}},{label:"Percentage",value:"p",operations:{show:["y_axis_precision"]}},{label:"SI-prefix",value:"s",operations:{hide:["y_axis_precision"]}}]},y_axis_precision:{title:"Axis tick format",info:"Select the tick format for the axis.",type:"select",init:"1",data:[{label:"0.00001",value:"5"},{label:"0.0001",value:"4"},{label:"0.001",value:"3"},{label:"0.01",value:"2"},{label:"0.1",value:"1"},{label:"1",value:"0"}]},separator_legend:{title:"Others",type:"separator"},show_legend:{title:"Show legend",info:"Would you like to add a legend?",type:"radiobutton",init:"true",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]},use_panels:{title:"Use multi-panels",info:"Would you like to separate your data into individual panels?",type:"radiobutton",init:"false",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]}}}}),function(){function t(e,t){return(new Date(t,e+1,0)).getDate()}function n(e,t,n){return function(r,i,s){var o=e(r),u=[];o<r&&t(o);if(s>1)while(o<i){var a=new Date(+o);n(a)%s===0&&u.push(a),t(o)}else while(o<i)u.push(new Date(+o)),t(o);return u}}var e=window.nv||{};e.version="1.1.15b",e.dev=!0,window.nv=e,e.tooltip=e.tooltip||{},e.utils=e.utils||{},e.models=e.models||{},e.charts={},e.graphs=[],e.logs={},e.dispatch=d3.dispatch("render_start","render_end"),e.dev&&(e.dispatch.on("render_start",function(t){e.logs.startTime=+(new Date)}),e.dispatch.on("render_end",function(t){e.logs.endTime=+(new Date),e.logs.totalTime=e.logs.endTime-e.logs.startTime,e.log("total",e.logs.totalTime)})),e.log=function(){if(e.dev&&console.log&&console.log.apply)console.log.apply(console,arguments);else if(e.dev&&typeof console.log=="function"&&Function.prototype.bind){var t=Function.prototype.bind.call(console.log,console);t.apply(console,arguments)}return arguments[arguments.length-1]},e.render=function(n){n=n||1,e.render.active=!0,e.dispatch.render_start(),setTimeout(function(){var t,r;for(var i=0;i<n&&(r=e.render.queue[i]);i++)t=r.generate(),typeof r.callback==typeof Function&&r.callback(t),e.graphs.push(t);e.render.queue.splice(0,i),e.render.queue.length?setTimeout(arguments.callee,0):(e.dispatch.render_end(),e.render.active=!1)},0)},e.render.active=!1,e.render.queue=[],e.addGraph=function(t){typeof arguments[0]==typeof Function&&(t={generate:arguments[0],callback:arguments[1]}),e.render.queue.push(t),e.render.active||e.render()},e.identity=function(e){return e},e.strip=function(e){return e.replace(/(\s|&)/g,"")},d3.time.monthEnd=function(e){return new Date(e.getFullYear(),e.getMonth(),0)},d3.time.monthEnds=n(d3.time.monthEnd,function(e){e.setUTCDate(e.getUTCDate()+1),e.setDate(t(e.getMonth()+1,e.getFullYear()))},function(e){return e.getMonth()}),e.interactiveGuideline=function(){function c(o){o.each(function(o){function g(){var e=d3.mouse(this),n=e[0],r=e[1],o=!0,a=!1;l&&(n=d3.event.offsetX,r=d3.event.offsetY,d3.event.target.tagName!=="svg"&&(o=!1),d3.event.target.className.baseVal.match("nv-legend")&&(a=!0)),o&&(n-=i.left,r-=i.top);if(n<0||r<0||n>p||r>d||d3.event.relatedTarget&&d3.event.relatedTarget.ownerSVGElement===undefined||a){if(l&&d3.event.relatedTarget&&d3.event.relatedTarget.ownerSVGElement===undefined&&d3.event.relatedTarget.className.match(t.nvPointerEventsClass))return;u.elementMouseout({mouseX:n,mouseY:r}),c.renderGuideLine(null);return}var f=s.invert(n);u.elementMousemove({mouseX:n,mouseY:r,pointXValue:f}),d3.event.type==="dblclick"&&u.elementDblclick({mouseX:n,mouseY:r,pointXValue:f})}var h=d3.select(this),p=n||960,d=r||400,v=h.selectAll("g.nv-wrap.nv-interactiveLineLayer").data([o]),m=v.enter().append("g").attr("class"," nv-wrap nv-interactiveLineLayer");m.append("g").attr("class","nv-interactiveGuideLine");if(!f)return;f.on("mousemove",g,!0).on("mouseout",g,!0).on("dblclick",g),c.renderGuideLine=function(t){if(!a)return;var n=v.select(".nv-interactiveGuideLine").selectAll("line").data(t!=null?[e.utils.NaNtoZero(t)]:[],String);n.enter().append("line").attr("class","nv-guideline").attr("x1",function(e){return e}).attr("x2",function(e){return e}).attr("y1",d).attr("y2",0),n.exit().remove()}})}var t=e.models.tooltip(),n=null,r=null,i={left:0,top:0},s=d3.scale.linear(),o=d3.scale.linear(),u=d3.dispatch("elementMousemove","elementMouseout","elementDblclick"),a=!0,f=null,l=navigator.userAgent.indexOf("MSIE")!==-1;return c.dispatch=u,c.tooltip=t,c.margin=function(e){return arguments.length?(i.top=typeof e.top!="undefined"?e.top:i.top,i.left=typeof e.left!="undefined"?e.left:i.left,c):i},c.width=function(e){return arguments.length?(n=e,c):n},c.height=function(e){return arguments.length?(r=e,c):r},c.xScale=function(e){return arguments.length?(s=e,c):s},c.showGuideLine=function(e){return arguments.length?(a=e,c):a},c.svgContainer=function(e){return arguments.length?(f=e,c):f},c},e.interactiveBisect=function(e,t,n){if(!e instanceof Array)return null;typeof n!="function"&&(n=function(e,t){return e.x});var r=d3.bisector(n).left,i=d3.max([0,r(e,t)-1]),s=n(e[i],i);typeof s=="undefined"&&(s=i);if(s===t)return i;var o=d3.min([i+1,e.length-1]),u=n(e[o],o);return typeof u=="undefined"&&(u=o),Math.abs(u-t)>=Math.abs(s-t)?i:o},e.nearestValueIndex=function(e,t,n){var r=Infinity,i=null;return e.forEach(function(e,s){var o=Math.abs(t-e);o<=r&&o<n&&(r=o,i=s)}),i},function(){window.nv.tooltip={},window.nv.models.tooltip=function(){function y(){if(a){var e=d3.select(a);e.node().tagName!=="svg"&&(e=e.select("svg"));var t=e.node()?e.attr("viewBox"):null;if(t){t=t.split(" ");var n=parseInt(e.style("width"))/t[2];l.left=l.left*n,l.top=l.top*n}}}function b(e){var t;a?t=d3.select(a):t=d3.select("body");var n=t.select(".nvtooltip");return n.node()===null&&(n=t.append("div").attr("class","nvtooltip "+(u?u:"xy-tooltip")).attr("id",h)),n.node().innerHTML=e,n.style("top",0).style("left",0).style("opacity",0),n.selectAll("div, table, td, tr").classed(p,!0),n.classed(p,!0),n.node()}function w(){if(!c)return;if(!g(n))return;y();var t=l.left,u=o!=null?o:l.top,h=b(m(n));f=h;if(a){var p=a.getElementsByTagName("svg")[0],d=p?p.getBoundingClientRect():a.getBoundingClientRect(),v={left:0,top:0};if(p){var E=p.getBoundingClientRect(),S=a.getBoundingClientRect(),x=E.top;if(x<0){var T=a.getBoundingClientRect();x=Math.abs(x)>T.height?0:x}v.top=Math.abs(x-S.top),v.left=Math.abs(E.left-S.left)}t+=a.offsetLeft+v.left-2*a.scrollLeft,u+=a.offsetTop+v.top-2*a.scrollTop}return s&&s>0&&(u=Math.floor(u/s)*s),e.tooltip.calcTooltipPosition([t,u],r,i,h),w}var t=null,n=null,r="w",i=50,s=25,o=null,u=null,a=null,f=null,l={left:null,top:null},c=!0,h="nvtooltip-"+Math.floor(Math.random()*1e5),p="nv-pointer-events-none",d=function(e,t){return e},v=function(e){return e},m=function(e){if(t!=null)return t;if(e==null)return"";var n=d3.select(document.createElement("table")),r=n.selectAll("thead").data([e]).enter().append("thead");r.append("tr").append("td").attr("colspan",3).append("strong").classed("x-value",!0).html(v(e.value));var i=n.selectAll("tbody").data([e]).enter().append("tbody"),s=i.selectAll("tr").data(function(e){return e.series}).enter().append("tr").classed("highlight",function(e){return e.highlight});s.append("td").classed("legend-color-guide",!0).append("div").style("background-color",function(e){return e.color}),s.append("td").classed("key",!0).html(function(e){return e.key}),s.append("td").classed("value",!0).html(function(e,t){return d(e.value,t)}),s.selectAll("td").each(function(e){if(e.highlight){var t=d3.scale.linear().domain([0,1]).range(["#fff",e.color]),n=.6;d3.select(this).style("border-bottom-color",t(n)).style("border-top-color",t(n))}});var o=n.node().outerHTML;return e.footer!==undefined&&(o+="<div class='footer'>"+e.footer+"</div>"),o},g=function(e){return e&&e.series&&e.series.length>0?!0:!1};return w.nvPointerEventsClass=p,w.content=function(e){return arguments.length?(t=e,w):t},w.tooltipElem=function(){return f},w.contentGenerator=function(e){return arguments.length?(typeof e=="function"&&(m=e),w):m},w.data=function(e){return arguments.length?(n=e,w):n},w.gravity=function(e){return arguments.length?(r=e,w):r},w.distance=function(e){return arguments.length?(i=e,w):i},w.snapDistance=function(e){return arguments.length?(s=e,w):s},w.classes=function(e){return arguments.length?(u=e,w):u},w.chartContainer=function(e){return arguments.length?(a=e,w):a},w.position=function(e){return arguments.length?(l.left=typeof e.left!="undefined"?e.left:l.left,l.top=typeof e.top!="undefined"?e.top:l.top,w):l},w.fixedTop=function(e){return arguments.length?(o=e,w):o},w.enabled=function(e){return arguments.length?(c=e,w):c},w.valueFormatter=function(e){return arguments.length?(typeof e=="function"&&(d=e),w):d},w.headerFormatter=function(e){return arguments.length?(typeof e=="function"&&(v=e),w):v},w.id=function(){return h},w},e.tooltip.show=function(t,n,r,i,s,o){var u=document.createElement("div");u.className="nvtooltip "+(o?o:"xy-tooltip");var a=s;if(!s||s.tagName.match(/g|svg/i))a=document.getElementsByTagName("body")[0];u.style.left=0,u.style.top=0,u.style.opacity=0,u.innerHTML=n,a.appendChild(u),s&&(t[0]=t[0]-s.scrollLeft,t[1]=t[1]-s.scrollTop),e.tooltip.calcTooltipPosition(t,r,i,u)},e.tooltip.findFirstNonSVGParent=function(e){while(e.tagName.match(/^g|svg$/i)!==null)e=e.parentNode;return e},e.tooltip.findTotalOffsetTop=function(e,t){var n=t;do isNaN(e.offsetTop)||(n+=e.offsetTop);while(e=e.offsetParent);return n},e.tooltip.findTotalOffsetLeft=function(e,t){var n=t;do isNaN(e.offsetLeft)||(n+=e.offsetLeft);while(e=e.offsetParent);return n},e.tooltip.calcTooltipPosition=function(t,n,r,i){var s=parseInt(i.offsetHeight),o=parseInt(i.offsetWidth),u=e.utils.windowSize().width,a=e.utils.windowSize().height,f=window.pageYOffset,l=window.pageXOffset,c,h;a=window.innerWidth>=document.body.scrollWidth?a:a-16,u=window.innerHeight>=document.body.scrollHeight?u:u-16,n=n||"s",r=r||20;var p=function(t){return e.tooltip.findTotalOffsetTop(t,h)},d=function(t){return e.tooltip.findTotalOffsetLeft(t,c)};switch(n){case"e":c=t[0]-o-r,h=t[1]-s/2;var v=d(i),m=p(i);v<l&&(c=t[0]+r>l?t[0]+r:l-v+c),m<f&&(h=f-m+h),m+s>f+a&&(h=f+a-m+h-s);break;case"w":c=t[0]+r,h=t[1]-s/2;var v=d(i),m=p(i);v+o>u&&(c=t[0]-o-r),m<f&&(h=f+5),m+s>f+a&&(h=f+a-m+h-s);break;case"n":c=t[0]-o/2-5,h=t[1]+r;var v=d(i),m=p(i);v<l&&(c=l+5),v+o>u&&(c=c-o/2+5),m+s>f+a&&(h=f+a-m+h-s);break;case"s":c=t[0]-o/2,h=t[1]-s-r;var v=d(i),m=p(i);v<l&&(c=l+5),v+o>u&&(c=c-o/2+5),f>m&&(h=f);break;case"none":c=t[0],h=t[1]-r;var v=d(i),m=p(i)}return i.style.left=c+"px",i.style.top=h+"px",i.style.opacity=1,i.style.position="absolute",i},e.tooltip.cleanup=function(){var e=document.getElementsByClassName("nvtooltip"),t=[];while(e.length)t.push(e[0]),e[0].style.transitionDelay="0 !important",e[0].style.opacity=0,e[0].className="nvtooltip-pending-removal";setTimeout(function(){while(t.length){var e=t.pop();e.parentNode.removeChild(e)}},500)}}(),e.utils.windowSize=function(){var e={width:640,height:480};return document.body&&document.body.offsetWidth&&(e.width=document.body.offsetWidth,e.height=document.body.offsetHeight),document.compatMode=="CSS1Compat"&&document.documentElement&&document.documentElement.offsetWidth&&(e.width=document.documentElement.offsetWidth,e.height=document.documentElement.offsetHeight),window.innerWidth&&window.innerHeight&&(e.width=window.innerWidth,e.height=window.innerHeight),e},e.utils.windowResize=function(e){if(e===undefined)return;var t=window.onresize;window.onresize=function(n){typeof t=="function"&&t(n),e(n)}},e.utils.getColor=function(t){return arguments.length?Object.prototype.toString.call(t)==="[object Array]"?function(e,n){return e.color||t[n%t.length]}:t:e.utils.defaultColor()},e.utils.defaultColor=function(){var e=d3.scale.category20().range();return function(t,n){return t.color||e[n%e.length]}},e.utils.customTheme=function(e,t,n){t=t||function(e){return e.key},n=n||d3.scale.category20().range();var r=n.length;return function(i,s){var o=t(i);return r||(r=n.length),typeof e[o]!="undefined"?typeof e[o]=="function"?e[o]():e[o]:n[--r]}},e.utils.pjax=function(t,n){function r(r){d3.html(r,function(r){var i=d3.select(n).node();i.parentNode.replaceChild(d3.select(r).select(n).node(),i),e.utils.pjax(t,n)})}d3.selectAll(t).on("click",function(){history.pushState(this.href,this.textContent,this.href),r(this.href),d3.event.preventDefault()}),d3.select(window).on("popstate",function(){d3.event.state&&r(d3.event.state)})},e.utils.calcApproxTextWidth=function(e){if(typeof e.style=="function"&&typeof e.text=="function"){var t=parseInt(e.style("font-size").replace("px","")),n=e.text().length;return n*t*.5}return 0},e.utils.NaNtoZero=function(e){return typeof e!="number"||isNaN(e)||e===null||e===Infinity?0:e},e.utils.optionsFunc=function(e){return e&&d3.map(e).forEach(function(e,t){typeof this[e]=="function"&&this[e](t)}.bind(this)),this},e.models.axis=function(){function m(e){return e.each(function(e){var i=d3.select(this),m=i.selectAll("g.nv-wrap.nv-axis").data([e]),g=m.enter().append("g").attr("class","nvd3 nv-wrap nv-axis"),y=g.append("g"),b=m.select("g");p!==null?t.ticks(p):(t.orient()=="top"||t.orient()=="bottom")&&t.ticks(Math.abs(s.range()[1]-s.range()[0])/100),b.call(t),v=v||t.scale();var w=t.tickFormat();w==null&&(w=v.tickFormat());var E=b.selectAll("text.nv-axislabel").data([o||null]);E.exit().remove();switch(t.orient()){case"top":E.enter().append("text").attr("class","nv-axislabel");var S=s.range().length==2?s.range()[1]:s.range()[s.range().length-1]+(s.range()[1]-s.range()[0]);E.attr("text-anchor","middle").attr("y",0).attr("x",S/2);if(u){var x=m.selectAll("g.nv-axisMaxMin").data(s.domain());x.enter().append("g").attr("class","nv-axisMaxMin").append("text"),x.exit().remove(),x.attr("transform",function(e,t){return"translate("+s(e)+",0)"}).select("text").attr("dy","-0.5em").attr("y",-t.tickPadding()).attr("text-anchor","middle").text(function(e,t){var n=w(e);return(""+n).match("NaN")?"":n}),x.attr("transform",function(e,t){return"translate("+s.range()[t]+",0)"})}break;case"bottom":var T=36,N=30,C=b.selectAll("g").select("text");if(f%360){C.each(function(e,t){var n=this.getBBox().width;n>N&&(N=n)});var k=Math.abs(Math.sin(f*Math.PI/180)),T=(k?k*N:N)+30;C.attr("transform",function(e,t,n){return"rotate("+f+" 0,0)"}).style("text-anchor",f%360>0?"start":"end")}E.enter().append("text").attr("class","nv-axislabel");var S=s.range().length==2?s.range()[1]:s.range()[s.range().length-1]+(s.range()[1]-s.range()[0]);E.attr("text-anchor","middle").attr("y",T).attr("x",S/2);if(u){var x=m.selectAll("g.nv-axisMaxMin").data([s.domain()[0],s.domain()[s.domain().length-1]]);x.enter().append("g").attr("class","nv-axisMaxMin").append("text"),x.exit().remove(),x.attr("transform",function(e,t){return"translate("+(s(e)+(h?s.rangeBand()/2:0))+",0)"}).select("text").attr("dy",".71em").attr("y",t.tickPadding()).attr("transform",function(e,t,n){return"rotate("+f+" 0,0)"}).style("text-anchor",f?f%360>0?"start":"end":"middle").text(function(e,t){var n=w(e);return(""+n).match("NaN")?"":n}),x.attr("transform",function(e,t){return"translate("+(s(e)+(h?s.rangeBand()/2:0))+",0)"})}c&&C.attr("transform",function(e,t){return"translate(0,"+(t%2==0?"0":"12")+")"});break;case"right":E.enter().append("text").attr("class","nv-axislabel"),E.style("text-anchor",l?"middle":"begin").attr("transform",l?"rotate(90)":"").attr("y",l?-Math.max(n.right,r)+12:-10).attr("x",l?s.range()[0]/2:t.tickPadding());if(u){var x=m.selectAll("g.nv-axisMaxMin").data(s.domain());x.enter().append("g").attr("class","nv-axisMaxMin").append("text").style("opacity",0),x.exit().remove(),x.attr("transform",function(e,t){return"translate(0,"+s(e)+")"}).select("text").attr("dy",".32em").attr("y",0).attr("x",t.tickPadding()).style("text-anchor","start").text(function(e,t){var n=w(e);return(""+n).match("NaN")?"":n}),x.attr("transform",function(e,t){return"translate(0,"+s.range()[t]+")"}).select("text").style("opacity",1)}break;case"left":E.enter().append("text").attr("class","nv-axislabel"),E.style("text-anchor",l?"middle":"end").attr("transform",l?"rotate(-90)":"").attr("y",l?-Math.max(n.left,r)+d:-10).attr("x",l?-s.range()[0]/2:-t.tickPadding());if(u){var x=m.selectAll("g.nv-axisMaxMin").data(s.domain());x.enter().append("g").attr("class","nv-axisMaxMin").append("text").style("opacity",0),x.exit().remove(),x.attr("transform",function(e,t){return"translate(0,"+v(e)+")"}).select("text").attr("dy",".32em").attr("y",0).attr("x",-t.tickPadding()).attr("text-anchor","end").text(function(e,t){var n=w(e);return(""+n).match("NaN")?"":n}),x.attr("transform",function(e,t){return"translate(0,"+s.range()[t]+")"}).select("text").style("opacity",1)}}E.text(function(e){return e}),u&&(t.orient()==="left"||t.orient()==="right")&&(b.selectAll("g").each(function(e,t){d3.select(this).select("text").attr("opacity",1);if(s(e)<s.range()[1]+10||s(e)>s.range()[0]-10)(e>1e-10||e<-1e-10)&&d3.select(this).attr("opacity",0),d3.select(this).select("text").attr("opacity",0)}),s.domain()[0]==s.domain()[1]&&s.domain()[0]==0&&m.selectAll("g.nv-axisMaxMin").style("opacity",function(e,t){return t?0:1}));if(u&&(t.orient()==="top"||t.orient()==="bottom")){var L=[];m.selectAll("g.nv-axisMaxMin").each(function(e,t){try{t?L.push(s(e)-this.getBBox().width-4):L.push(s(e)+this.getBBox().width+4)}catch(n){t?L.push(s(e)-4):L.push(s(e)+4)}}),b.selectAll("g").each(function(e,t){if(s(e)<L[0]||s(e)>L[1])e>1e-10||e<-1e-10?d3.select(this).remove():d3.select(this).select("text").remove()})}a&&b.selectAll(".tick").filter(function(e){return!parseFloat(Math.round(e.__data__*1e5)/1e6)&&e.__data__!==undefined}).classed("zero",!0),v=s.copy()}),m}var t=d3.svg.axis(),n={top:0,right:0,bottom:0,left:0},r=75,i=60,s=d3.scale.linear(),o=null,u=!0,a=!0,f=0,l=!0,c=!1,h=!1,p=null,d=12;t.scale(s).orient("bottom").tickFormat(function(e){return e});var v;return m.axis=t,d3.rebind(m,t,"orient","tickValues","tickSubdivide","tickSize","tickPadding","tickFormat"),d3.rebind(m,s,"domain","range","rangeBand","rangeBands"),m.options=e.utils.optionsFunc.bind(m),m.margin=function(e){return arguments.length?(n.top=typeof e.top!="undefined"?e.top:n.top,n.right=typeof e.right!="undefined"?e.right:n.right,n.bottom=typeof e.bottom!="undefined"?e.bottom:n.bottom,n.left=typeof e.left!="undefined"?e.left:n.left,m):n},m.width=function(e){return arguments.length?(r=e,m):r},m.ticks=function(e){return arguments.length?(p=e,m):p},m.height=function(e){return arguments.length?(i=e,m):i},m.axisLabel=function(e){return arguments.length?(o=e,m):o},m.showMaxMin=function(e){return arguments.length?(u=e,m):u},m.highlightZero=function(e){return arguments.length?(a=e,m):a},m.scale=function(e){return arguments.length?(s=e,t.scale(s),h=typeof s.rangeBands=="function",d3.rebind(m,s,"domain","range","rangeBand","rangeBands"),m):s},m.rotateYLabel=function(e){return arguments.length?(l=e,m):l},m.rotateLabels=function(e){return arguments.length?(f=e,m):f},m.staggerLabels=function(e){return arguments.length?(c=e,m):c},m.axisLabelDistance=function(e){return arguments.length?(d=e,m):d},m},e.models.historicalBar=function(){function w(E){return E.each(function(w){var E=n-t.left-t.right,S=r-t.top-t.bottom,T=d3.select(this);s.domain(d||d3.extent(w[0].values.map(u).concat(f))),c?s.range(m||[E*.5/w[0].values.length,E*(w[0].values.length-.5)/w[0].values.length]):s.range(m||[0,E]),o.domain(v||d3.extent(w[0].values.map(a).concat(l))).range(g||[S,0]),s.domain()[0]===s.domain()[1]&&(s.domain()[0]?s.domain([s.domain()[0]-s.domain()[0]*.01,s.domain()[1]+s.domain()[1]*.01]):s.domain([-1,1])),o.domain()[0]===o.domain()[1]&&(o.domain()[0]?o.domain([o.domain()[0]+o.domain()[0]*.01,o.domain()[1]-o.domain()[1]*.01]):o.domain([-1,1]));var N=T.selectAll("g.nv-wrap.nv-historicalBar-"+i).data([w[0].values]),C=N.enter().append("g").attr("class","nvd3 nv-wrap nv-historicalBar-"+i),k=C.append("defs"),L=C.append("g"),A=N.select("g");L.append("g").attr("class","nv-bars"),N.attr("transform","translate("+t.left+","+t.top+")"),T.on("click",function(e,t){y.chartClick({data:e,index:t,pos:d3.event,id:i})}),k.append("clipPath").attr("id","nv-chart-clip-path-"+i).append("rect"),N.select("#nv-chart-clip-path-"+i+" rect").attr("width",E).attr("height",S),A.attr("clip-path",h?"url(#nv-chart-clip-path-"+i+")":"");var O=N.select(".nv-bars").selectAll(".nv-bar").data(function(e){return e},function(e,t){return u(e,t)});O.exit().remove();var M=O.enter().append("rect").attr("x",0).attr("y",function(t,n){return e.utils.NaNtoZero(o(Math.max(0,a(t,n))))}).attr("height",function(t,n){return e.utils.NaNtoZero(Math.abs(o(a(t,n))-o(0)))}).attr("transform",function(e,t){return"translate("+(s(u(e,t))-E/w[0].values.length*.45)+",0)"}).on("mouseover",function(e,t){if(!b)return;d3.select(this).classed("hover",!0),y.elementMouseover({point:e,series:w[0],pos:[s(u(e,t)),o(a(e,t))],pointIndex:t,seriesIndex:0,e:d3.event})}).on("mouseout",function(e,t){if(!b)return;d3.select(this).classed("hover",!1),y.elementMouseout({point:e,series:w[0],pointIndex:t,seriesIndex:0,e:d3.event})}).on("click",function(e,t){if(!b)return;y.elementClick({value:a(e,t),data:e,index:t,pos:[s(u(e,t)),o(a(e,t))],e:d3.event,id:i}),d3.event.stopPropagation()}).on("dblclick",function(e,t){if(!b)return;y.elementDblClick({value:a(e,t),data:e,index:t,pos:[s(u(e,t)),o(a(e,t))],e:d3.event,id:i}),d3.event.stopPropagation()});O.attr("fill",function(e,t){return p(e,t)}).attr("class",function(e,t,n){return(a(e,t)<0?"nv-bar negative":"nv-bar positive")+" nv-bar-"+n+"-"+t}).attr("transform",function(e,t){return"translate("+(s(u(e,t))-E/w[0].values.length*.45)+",0)"}).attr("width",E/w[0].values.length*.9),O.attr("y",function(t,n){var r=a(t,n)<0?o(0):o(0)-o(a(t,n))<1?o(0)-1:o(a(t,n));return e.utils.NaNtoZero(r)}).attr("height",function(t,n){return e.utils.NaNtoZero(Math.max(Math.abs(o(a(t,n))-o(0)),1))})}),w}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=Math.floor(Math.random()*1e4),s=d3.scale.linear(),o=d3.scale.linear(),u=function(e){return e.x},a=function(e){return e.y},f=[],l=[0],c=!1,h=!0,p=e.utils.defaultColor(),d,v,m,g,y=d3.dispatch("chartClick","elementClick","elementDblClick","elementMouseover","elementMouseout"),b=!0;return w.highlightPoint=function(e,t){d3.select(".nv-historicalBar-"+i).select(".nv-bars .nv-bar-0-"+e).classed("hover",t)},w.clearHighlights=function(){d3.select(".nv-historicalBar-"+i).select(".nv-bars .nv-bar.hover").classed("hover",!1)},w.dispatch=y,w.options=e.utils.optionsFunc.bind(w),w.x=function(e){return arguments.length?(u=e,w):u},w.y=function(e){return arguments.length?(a=e,w):a},w.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,w):t},w.width=function(e){return arguments.length?(n=e,w):n},w.height=function(e){return arguments.length?(r=e,w):r},w.xScale=function(e){return arguments.length?(s=e,w):s},w.yScale=function(e){return arguments.length?(o=e,w):o},w.xDomain=function(e){return arguments.length?(d=e,w):d},w.yDomain=function(e){return arguments.length?(v=e,w):v},w.xRange=function(e){return arguments.length?(m=e,w):m},w.yRange=function(e){return arguments.length?(g=e,w):g},w.forceX=function(e){return arguments.length?(f=e,w):f},w.forceY=function(e){return arguments.length?(l=e,w):l},w.padData=function(e){return arguments.length?(c=e,w):c},w.clipEdge=function(e){return arguments.length?(h=e,w):h},w.color=function(t){return arguments.length?(p=e.utils.getColor(t),w):p},w.id=function(e){return arguments.length?(i=e,w):i},w.interactive=function(e){return arguments.length?(b=!1,w):b},w},e.models.bullet=function(){function m(e){return e.each(function(e,n){var p=c-t.left-t.right,m=h-t.top-t.bottom,g=d3.select(this),y=i.call(this,e,n).slice().sort(d3.descending),b=s.call(this,e,n).slice().sort(d3.descending),w=o.call(this,e,n).slice().sort(d3.descending),E=u.call(this,e,n).slice(),S=a.call(this,e,n).slice(),x=f.call(this,e,n).slice(),T=d3.scale.linear().domain(d3.extent(d3.merge([l,y]))).range(r?[p,0]:[0,p]),N=this.__chart__||d3.scale.linear().domain([0,Infinity]).range(T.range());this.__chart__=T;var C=d3.min(y),k=d3.max(y),L=y[1],A=g.selectAll("g.nv-wrap.nv-bullet").data([e]),O=A.enter().append("g").attr("class","nvd3 nv-wrap nv-bullet"),M=O.append("g"),_=A.select("g");M.append("rect").attr("class","nv-range nv-rangeMax"),M.append("rect").attr("class","nv-range nv-rangeAvg"),M.append("rect").attr("class","nv-range nv-rangeMin"),M.append("rect").attr("class","nv-measure"),M.append("path").attr("class","nv-markerTriangle"),A.attr("transform","translate("+t.left+","+t.top+")");var D=function(e){return Math.abs(N(e)-N(0))},P=function(e){return Math.abs(T(e)-T(0))},H=function(e){return e<0?N(e):N(0)},B=function(e){return e<0?T(e):T(0)};_.select("rect.nv-rangeMax").attr("height",m).attr("width",P(k>0?k:C)).attr("x",B(k>0?k:C)).datum(k>0?k:C),_.select("rect.nv-rangeAvg").attr("height",m).attr("width",P(L)).attr("x",B(L)).datum(L),_.select("rect.nv-rangeMin").attr("height",m).attr("width",P(k)).attr("x",B(k)).attr("width",P(k>0?C:k)).attr("x",B(k>0?C:k)).datum(k>0?C:k),_.select("rect.nv-measure").style("fill",d).attr("height",m/3).attr("y",m/3).attr("width",w<0?T(0)-T(w[0]):T(w[0])-T(0)).attr("x",B(w)).on("mouseover",function(){v.elementMouseover({value:w[0],label:x[0]||"Current",pos:[T(w[0]),m/2]})}).on("mouseout",function(){v.elementMouseout({value:w[0],label:x[0]||"Current"})});var j=m/6;b[0]?_.selectAll("path.nv-markerTriangle").attr("transform",function(e){return"translate("+T(b[0])+","+m/2+")"}).attr("d","M0,"+j+"L"+j+","+ -j+" "+ -j+","+ -j+"Z").on("mouseover",function(){v.elementMouseover({value:b[0],label:S[0]||"Previous",pos:[T(b[0]),m/2]})}).on("mouseout",function(){v.elementMouseout({value:b[0],label:S[0]||"Previous"})}):_.selectAll("path.nv-markerTriangle").remove(),A.selectAll(".nv-range").on("mouseover",function(e,t){var n=E[t]||(t?t==1?"Mean":"Minimum":"Maximum");v.elementMouseover({value:e,label:n,pos:[T(e),m/2]})}).on("mouseout",function(e,t){var n=E[t]||(t?t==1?"Mean":"Minimum":"Maximum");v.elementMouseout({value:e,label:n})})}),m}var t={top:0,right:0,bottom:0,left:0},n="left",r=!1,i=function(e){return e.ranges},s=function(e){return e.markers},o=function(e){return e.measures},u=function(e){return e.rangeLabels?e.rangeLabels:[]},a=function(e){return e.markerLabels?e.markerLabels:[]},f=function(e){return e.measureLabels?e.measureLabels:[]},l=[0],c=380,h=30,p=null,d=e.utils.getColor(["#1f77b4"]),v=d3.dispatch("elementMouseover","elementMouseout");return m.dispatch=v,m.options=e.utils.optionsFunc.bind(m),m.orient=function(e){return arguments.length?(n=e,r=n=="right"||n=="bottom",m):n},m.ranges=function(e){return arguments.length?(i=e,m):i},m.markers=function(e){return arguments.length?(s=e,m):s},m.measures=function(e){return arguments.length?(o=e,m):o},m.forceX=function(e){return arguments.length?(l=e,m):l},m.width=function(e){return arguments.length?(c=e,m):c},m.height=function(e){return arguments.length?(h=e,m):h},m.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,m):t},m.tickFormat=function(e){return arguments.length?(p=e,m):p},m.color=function(t){return arguments.length?(d=e.utils.getColor(t),m):d},m},e.models.bulletChart=function(){function m(e){return e.each(function(n,h){var g=d3.select(this),y=(a||parseInt(g.style("width"))||960)-i.left-i.right,b=f-i.top-i.bottom,w=this;m.update=function(){m(e)},m.container=this;if(!n||!s.call(this,n,h)){var E=g.selectAll(".nv-noData").data([p]);return E.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),E.attr("x",i.left+y/2).attr("y",18+i.top+b/2).text(function(e){return e}),m}g.selectAll(".nv-noData").remove();var S=s.call(this,n,h).slice().sort(d3.descending),x=o.call(this,n,h).slice().sort(d3.descending),T=u.call(this,n,h).slice().sort(d3.descending),N=g.selectAll("g.nv-wrap.nv-bulletChart").data([n]),C=N.enter().append("g").attr("class","nvd3 nv-wrap nv-bulletChart"),k=C.append("g"),L=N.select("g");k.append("g").attr("class","nv-bulletWrap"),k.append("g").attr("class","nv-titles"),N.attr("transform","translate("+i.left+","+i.top+")");var A=d3.scale.linear().domain([0,Math.max(S[0],x[0],T[0])]).range(r?[y,0]:[0,y]),O=this.__chart__||d3.scale.linear().domain([0,Infinity]).range(A.range());this.__chart__=A;var M=function(e){return Math.abs(O(e)-O(0))},_=function(e){return Math.abs(A(e)-A(0))},D=k.select(".nv-titles").append("g").attr("text-anchor","end").attr("transform","translate(-6,"+(f-i.top-i.bottom)/2+")");D.append("text").attr("class","nv-title").text(function(e){return e.title}),D.append("text").attr("class","nv-subtitle").attr("dy","1em").text(function(e){return e.subtitle}),t.width(y).height(b);var P=L.select(".nv-bulletWrap");d3.transition(P).call(t);var H=l||A.tickFormat(y/100),B=L.selectAll("g.nv-tick").data(A.ticks(y/50),function(e){return this.textContent||H(e)}),j=B.enter().append("g").attr("class","nv-tick").attr("transform",function(e){return"translate("+O(e)+",0)"}).style("opacity",1e-6);j.append("line").attr("y1",b).attr("y2",b*7/6),j.append("text").attr("text-anchor","middle").attr("dy","1em").attr("y",b*7/6).text(H);var F=d3.transition(B).attr("transform",function(e){return"translate("+A(e)+",0)"}).style("opacity",1);F.select("line").attr("y1",b).attr("y2",b*7/6),F.select("text").attr("y",b*7/6),d3.transition(B.exit()).attr("transform",function(e){return"translate("+A(e)+",0)"}).style("opacity",1e-6).remove(),d.on("tooltipShow",function(e){e.key=n.title,c&&v(e,w.parentNode)})}),d3.timer.flush(),m}var t=e.models.bullet(),n="left",r=!1,i={top:5,right:40,bottom:20,left:120},s=function(e){return e.ranges},o=function(e){return e.markers},u=function(e){return e.measures},a=null,f=55,l=null,c=!0,h=function(e,t,n,r,i){return"<h3>"+t+"</h3>"+"<p>"+n+"</p>"},p="No Data Available.",d=d3.dispatch("tooltipShow","tooltipHide"),v=function(t,n){var r=t.pos[0]+(n.offsetLeft||0)+i.left,s=t.pos[1]+(n.offsetTop||0)+i.top,o=h(t.key,t.label,t.value,t,m);e.tooltip.show([r,s],o,t.value<0?"e":"w",null,n)};return t.dispatch.on("elementMouseover.tooltip",function(e){d.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){d.tooltipHide(e)}),d.on("tooltipHide",function(){c&&e.tooltip.cleanup()}),m.dispatch=d,m.bullet=t,d3.rebind(m,t,"color"),m.options=e.utils.optionsFunc.bind(m),m.orient=function(e){return arguments.length?(n=e,r=n=="right"||n=="bottom",m):n},m.ranges=function(e){return arguments.length?(s=e,m):s},m.markers=function(e){return arguments.length?(o=e,m):o},m.measures=function(e){return arguments.length?(u=e,m):u},m.width=function(e){return arguments.length?(a=e,m):a},m.height=function(e){return arguments.length?(f=e,m):f},m.margin=function(e){return arguments.length?(i.top=typeof e.top!="undefined"?e.top:i.top,i.right=typeof e.right!="undefined"?e.right:i.right,i.bottom=typeof e.bottom!="undefined"?e.bottom:i.bottom,i.left=typeof e.left!="undefined"?e.left:i.left,m):i},m.tickFormat=function(e){return arguments.length?(l=e,m):l},m.tooltips=function(e){return arguments.length?(c=e,m):c},m.tooltipContent=function(e){return arguments.length?(h=e,m):h},m.noData=function(e){return arguments.length?(p=e,m):p},m},e.models.cumulativeLineChart=function(){function D(b){return b.each(function(b){function I(e,t){d3.select(D.container).style("cursor","ew-resize")}function q(e,t){M.x=d3.event.x,M.i=Math.round(O.invert(M.x)),nt()}function R(e,t){d3.select(D.container).style("cursor","auto"),x.index=M.i,k.stateChange(x)}function nt(){tt.data([M]);var e=D.transitionDuration();D.transitionDuration(0),D.update(),D.transitionDuration(e)}var L=d3.select(this).classed("nv-chart-"+S,!0),A=this,H=(f||parseInt(L.style("width"))||960)-u.left-u.right,B=(l||parseInt(L.style("height"))||400)-u.top-u.bottom;D.update=function(){L.call(D)},D.container=this,x.disabled=b.map(function(e){return!!e.disabled});if(!T){var j;T={};for(j in x)x[j]instanceof Array?T[j]=x[j].slice(0):T[j]=x[j]}var F=d3.behavior.drag().on("dragstart",I).on("drag",q).on("dragend",R);if(!b||!b.length||!b.filter(function(e){return e.values.length}).length){var U=L.selectAll(".nv-noData").data([N]);return U.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),U.attr("x",u.left+H/2).attr("y",u.top+B/2).text(function(e){return e}),D}L.selectAll(".nv-noData").remove(),w=t.xScale(),E=t.yScale();if(!y){var z=b.filter(function(e){return!e.disabled}).map(function(e,n){var r=d3.extent(e.values,t.y());return r[0]<-0.95&&(r[0]=-0.95),[(r[0]-r[1])/(1+r[1]),(r[1]-r[0])/(1+r[0])]}),W=[d3.min(z,function(e){return e[0]}),d3.max(z,function(e){return e[1]})];t.yDomain(W)}else t.yDomain(null);O.domain([0,b[0].values.length-1]).range([0,H]).clamp(!0);var b=P(M.i,b),X=g?"none":"all",V=L.selectAll("g.nv-wrap.nv-cumulativeLine").data([b]),$=V.enter().append("g").attr("class","nvd3 nv-wrap nv-cumulativeLine").append("g"),J=V.select("g");$.append("g").attr("class","nv-interactive"),$.append("g").attr("class","nv-x nv-axis").style("pointer-events","none"),$.append("g").attr("class","nv-y nv-axis"),$.append("g").attr("class","nv-background"),$.append("g").attr("class","nv-linesWrap").style("pointer-events",X),$.append("g").attr("class","nv-avgLinesWrap").style("pointer-events","none"),$.append("g").attr("class","nv-legendWrap"),$.append("g").attr("class","nv-controlsWrap"),c&&(i.width(H),J.select(".nv-legendWrap").datum(b).call(i),u.top!=i.height()&&(u.top=i.height(),B=(l||parseInt(L.style("height"))||400)-u.top-u.bottom),J.select(".nv-legendWrap").attr("transform","translate(0,"+ -u.top+")"));if(m){var K=[{key:"Re-scale y-axis",disabled:!y}];s.width(140).color(["#444","#444","#444"]).rightAlign(!1).margin({top:5,right:0,bottom:5,left:20}),J.select(".nv-controlsWrap").datum(K).attr("transform","translate(0,"+ -u.top+")").call(s)}V.attr("transform","translate("+u.left+","+u.top+")"),d&&J.select(".nv-y.nv-axis").attr("transform","translate("+H+",0)");var Q=b.filter(function(e){return e.tempDisabled});V.select(".tempDisabled").remove(),Q.length&&V.append("text").attr("class","tempDisabled").attr("x",H/2).attr("y","-.71em").style("text-anchor","end").text(Q.map(function(e){return e.key}).join(", ")+" values cannot be calculated for this time period."),g&&(o.width(H).height(B).margin({left:u.left,top:u.top}).svgContainer(L).xScale(w),V.select(".nv-interactive").call(o)),$.select(".nv-background").append("rect"),J.select(".nv-background rect").attr("width",H).attr("height",B),t.y(function(e){return e.display.y}).width(H).height(B).color(b.map(function(e,t){return e.color||a(e,t)}).filter(function(e,t){return!b[t].disabled&&!b[t].tempDisabled}));var G=J.select(".nv-linesWrap").datum(b.filter(function(e){return!e.disabled&&!e.tempDisabled}));G.call(t),b.forEach(function(e,t){e.seriesIndex=t});var Y=b.filter(function(e){return!e.disabled&&!!C(e)}),Z=J.select(".nv-avgLinesWrap").selectAll("line").data(Y,function(e){return e.key}),et=function(e){var t=E(C(e));return t<0?0:t>B?B:t};Z.enter().append("line").style("stroke-width",2).style("stroke-dasharray","10,10").style("stroke",function(e,n){return t.color()(e,e.seriesIndex)}).attr("x1",0).attr("x2",H).attr("y1",et).attr("y2",et),Z.style("stroke-opacity",function(e){var t=E(C(e));return t<0||t>B?0:1}).attr("x1",0).attr("x2",H).attr("y1",et).attr("y2",et),Z.exit().remove();var tt=G.selectAll(".nv-indexLine").data([M]);tt.enter().append("rect").attr("class","nv-indexLine").attr("width",3).attr("x",-2).attr("fill","red").attr("fill-opacity",.5).style("pointer-events","all").call(F),tt.attr("transform",function(e){return"translate("+O(e.i)+",0)"}).attr("height",B),h&&(n.scale(w).ticks(Math.min(b[0].values.length,H/70)).tickSize(-B,0),J.select(".nv-x.nv-axis").attr("transform","translate(0,"+E.range()[0]+")"),d3.transition(J.select(".nv-x.nv-axis")).call(n)),p&&(r.scale(E).ticks(B/36).tickSize(-H,0),d3.transition(J.select(".nv-y.nv-axis")).call(r)),J.select(".nv-background rect").on("click",function(){M.x=d3.mouse(this)[0],M.i=Math.round(O.invert(M.x)),x.index=M.i,k.stateChange(x),nt()}),t.dispatch.on("elementClick",function(e){M.i=e.pointIndex,M.x=O(M.i),x.index=M.i,k.stateChange(x),nt()}),s.dispatch.on("legendClick",function(e,t){e.disabled=!e.disabled,y=!e.disabled,x.rescaleY=y,k.stateChange(x),D.update()}),i.dispatch.on("stateChange",function(e){x.disabled=e.disabled,k.stateChange(x),D.update()}),o.dispatch.on("elementMousemove",function(i){t.clearHighlights();var s,f,l,c=[];b.filter(function(e,t){return e.seriesIndex=t,!e.disabled}).forEach(function(n,r){f=e.interactiveBisect(n.values,i.pointXValue,D.x()),t.highlightPoint(r,f,!0);var o=n.values[f];if(typeof o=="undefined")return;typeof s=="undefined"&&(s=o),typeof l=="undefined"&&(l=D.xScale()(D.x()(o,f))),c.push({key:n.key,value:D.y()(o,f),color:a(n,n.seriesIndex)})});if(c.length>2){var h=D.yScale().invert(i.mouseY),p=Math.abs(D.yScale().domain()[0]-D.yScale().domain()[1]),d=.03*p,m=e.nearestValueIndex(c.map(function(e){return e.value}),h,d);m!==null&&(c[m].highlight=!0)}var g=n.tickFormat()(D.x()(s,f),f);o.tooltip.position({left:l+u.left,top:i.mouseY+u.top}).chartContainer(A.parentNode).enabled(v).valueFormatter(function(e,t){return r.tickFormat()(e)}).data({value:g,series:c})(),o.renderGuideLine(l)}),o.dispatch.on("elementMouseout",function(e){k.tooltipHide(),t.clearHighlights()}),k.on("tooltipShow",function(e){v&&_(e,A.parentNode)}),k.on("changeState",function(e){typeof e.disabled!="undefined"&&(b.forEach(function(t,n){t.disabled=e.disabled[n]}),x.disabled=e.disabled),typeof e.index!="undefined"&&(M.i=e.index,M.x=O(M.i),x.index=e.index,tt.data([M])),typeof e.rescaleY!="undefined"&&(y=e.rescaleY),D.update()})}),D}function P(e,n){return n.map(function(n,r){if(!n.values)return n;var i=n.values[e];if(i==null)return n;var s=t.y()(i,e);return s<-0.95&&!A?(n.tempDisabled=!0,n):(n.tempDisabled=!1,n.values=n.values.map(function(e,n){return e.display={y:(t.y()(e,n)-s)/(1+s)},e}),n)})}var t=e.models.line(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.models.legend(),o=e.interactiveGuideline(),u={top:30,right:30,bottom:50,left:60},a=e.utils.defaultColor(),f=null,l=null,c=!0,h=!0,p=!0,d=!1,v=!0,m=!0,g=!1,y=!0,b=function(e,t,n,r,i){return"<h3>"+e+"</h3>"+"<p>"+n+" at "+t+"</p>"},w,E,S=t.id(),x={index:0,rescaleY:y},T=null,N="No Data Available.",C=function(e){return e.average},k=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),L=0,A=!1;n.orient("bottom").tickPadding(7),r.orient(d?"right":"left"),s.updateState(!1);var O=d3.scale.linear(),M={i:0,x:0},_=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),a=n.tickFormat()(t.x()(i.point,i.pointIndex)),f=r.tickFormat()(t.y()(i.point,i.pointIndex)),l=b(i.series.key,a,f,i,D);e.tooltip.show([o,u],l,null,null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+u.left,e.pos[1]+u.top],k.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){k.tooltipHide(e)}),k.on("tooltipHide",function(){v&&e.tooltip.cleanup()}),D.dispatch=k,D.lines=t,D.legend=i,D.xAxis=n,D.yAxis=r,D.interactiveLayer=o,d3.rebind(D,t,"defined","isArea","x","y","xScale","yScale","size","xDomain","yDomain","xRange","yRange","forceX","forceY","interactive","clipEdge","clipVoronoi","useVoronoi","id"),D.options=e.utils.optionsFunc.bind(D),D.margin=function(e){return arguments.length?(u.top=typeof e.top!="undefined"?e.top:u.top,u.right=typeof e.right!="undefined"?e.right:u.right,u.bottom=typeof e.bottom!="undefined"?e.bottom:u.bottom,u.left=typeof e.left!="undefined"?e.left:u.left,D):u},D.width=function(e){return arguments.length?(f=e,D):f},D.height=function(e){return arguments.length?(l=e,D):l},D.color=function(t){return arguments.length?(a=e.utils.getColor(t),i.color(a),D):a},D.rescaleY=function(e){return arguments.length?(y=e,D):y},D.showControls=function(e){return arguments.length?(m=e,D):m},D.useInteractiveGuideline=function(e){return arguments.length?(g=e,e===!0&&(D.interactive(!1),D.useVoronoi(!1)),D):g},D.showLegend=function(e){return arguments.length?(c=e,D):c},D.showXAxis=function(e){return arguments.length?(h=e,D):h},D.showYAxis=function(e){return arguments.length?(p=e,D):p},D.rightAlignYAxis=function(e){return arguments.length?(d=e,r.orient(e?"right":"left"),D):d},D.tooltips=function(e){return arguments.length?(v=e,D):v},D.tooltipContent=function(e){return arguments.length?(b=e,D):b},D.state=function(e){return arguments.length?(x=e,D):x},D.defaultState=function(e){return arguments.length?(T=e,D):T},D.noData=function(e){return arguments.length?(N=e,D):N},D.average=function(e){return arguments.length?(C=e,D):C},D.transitionDuration=function(e){return arguments.length?(L=e,D):L},D.noErrorCheck=function(e){return arguments.length?(A=e,D):A},D},e.models.discreteBar=function(){function E(e){return e.each(function(e){var i=n-t.left-t.right,E=r-t.top-t.bottom,S=d3.select(this);e.forEach(function(e,t){e.values.forEach(function(e){e.series=t})});var T=p&&d?[]:e.map(function(e){return e.values.map(function(e,t){return{x:u(e,t),y:a(e,t),y0:e.y0}})});s.domain(p||d3.merge(T).map(function(e){return e.x})).rangeBands(v||[0,i],.1),o.domain(d||d3.extent(d3.merge(T).map(function(e){return e.y}).concat(f))),c?o.range(m||[E-(o.domain()[0]<0?12:0),o.domain()[1]>0?12:0]):o.range(m||[E,0]),b=b||s,w=w||o.copy().range([o(0),o(0)]);var N=S.selectAll("g.nv-wrap.nv-discretebar").data([e]),C=N.enter().append("g").attr("class","nvd3 nv-wrap nv-discretebar"),k=C.append("g"),L=N.select("g");k.append("g").attr("class","nv-groups"),N.attr("transform","translate("+t.left+","+t.top+")");var A=N.select(".nv-groups").selectAll(".nv-group").data(function(e){return e},function(e){return e.key});A.enter().append("g").style("stroke-opacity",1e-6).style("fill-opacity",1e-6),A.exit().style("stroke-opacity",1e-6).style("fill-opacity",1e-6).remove(),A.attr("class",function(e,t){return"nv-group nv-series-"+t}).classed("hover",function(e){return e.hover}),A.style("stroke-opacity",1).style("fill-opacity",.75);var O=A.selectAll("g.nv-bar").data(function(e){return e.values});O.exit().remove();var M=O.enter().append("g").attr("transform",function(e,t,n){return"translate("+(s(u(e,t))+s.rangeBand()*.05)+", "+o(0)+")"}).on("mouseover",function(t,n){d3.select(this).classed("hover",!0),g.elementMouseover({value:a(t,n),point:t,series:e[t.series],pos:[s(u(t,n))+s.rangeBand()*(t.series+.5)/e.length,o(a(t,n))],pointIndex:n,seriesIndex:t.series,e:d3.event})}).on("mouseout",function(t,n){d3.select(this).classed("hover",!1),g.elementMouseout({value:a(t,n),point:t,series:e[t.series],pointIndex:n,seriesIndex:t.series,e:d3.event})}).on("click",function(t,n){g.elementClick({value:a(t,n),point:t,series:e[t.series],pos:[s(u(t,n))+s.rangeBand()*(t.series+.5)/e.length,o(a(t,n))],pointIndex:n,seriesIndex:t.series,e:d3.event}),d3.event.stopPropagation()}).on("dblclick",function(t,n){g.elementDblClick({value:a(t,n),point:t,series:e[t.series],pos:[s(u(t,n))+s.rangeBand()*(t.series+.5)/e.length,o(a(t,n))],pointIndex:n,seriesIndex:t.series,e:d3.event}),d3.event.stopPropagation()});M.append("rect").attr("height",0).attr("width",s.rangeBand()*.9/e.length),c?(M.append("text").attr("text-anchor","middle"),O.select("text").text(function(e,t){return h(a(e,t))}).attr("x",s.rangeBand()*.9/2).attr("y",function(e,t){return a(e,t)<0?o(a(e,t))-o(0)+12:-4})):O.selectAll("text").remove(),O.attr("class",function(e,t){return a(e,t)<0?"nv-bar negative":"nv-bar positive"}).style("fill",function(e,t){return e.color||l(e,t)}).style("stroke",function(e,t){return e.color||l(e,t)}).select("rect").attr("class",y).attr("width",s.rangeBand()*.9/e.length),O.attr("transform",function(e,t){var n=s(u(e,t))+s.rangeBand()*.05,r=a(e,t)<0?o(0):o(0)-o(a(e,t))<1?o(0)-1:o(a(e,t));return"translate("+n+", "+r+")"}).select("rect").attr("height",function(e,t){return Math.max(Math.abs(o(a(e,t))-o(d&&d[0]||0))||1)}),b=s.copy(),w=o.copy()}),E}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=Math.floor(Math.random()*1e4),s=d3.scale.ordinal(),o=d3.scale.linear(),u=function(e){return e.x},a=function(e){return e.y},f=[0],l=e.utils.defaultColor(),c=!1,h=d3.format(",.2f"),p,d,v,m,g=d3.dispatch("chartClick","elementClick","elementDblClick","elementMouseover","elementMouseout"),y="discreteBar",b,w;return E.dispatch=g,E.options=e.utils.optionsFunc.bind(E),E.x=function(e){return arguments.length?(u=e,E):u},E.y=function(e){return arguments.length?(a=e,E):a},E.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,E):t},E.width=function(e){return arguments.length?(n=e,E):n},E.height=function(e){return arguments.length?(r=e,E):r},E.xScale=function(e){return arguments.length?(s=e,E):s},E.yScale=function(e){return arguments.length?(o=e,E):o},E.xDomain=function(e){return arguments.length?(p=e,E):p},E.yDomain=function(e){return arguments.length?(d=e,E):d},E.xRange=function(e){return arguments.length?(v=e,E):v},E.yRange=function(e){return arguments.length?(m=e,E):m},E.forceY=function(e){return arguments.length?(f=e,E):f},E.color=function(t){return arguments.length?(l=e.utils.getColor(t),E):l},E.id=function(e){return arguments.length?(i=e,E):i},E.showValues=function(e){return arguments.length?(c=e,E):c},E.valueFormat=function(e){return arguments.length?(h=e,E):h},E.rectClass=function(e){return arguments.length?(y=e,E):y},E},e.models.discreteBarChart=function(){function w(e){return e.each(function(e){var u=d3.select(this),p=this,y=(s||parseInt(u.style("width"))||960)-i.left-i.right,E=(o||parseInt(u.style("height"))||400)-i.top-i.bottom;w.update=function(){g.beforeUpdate(),u.call(w)},w.container=this;if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var S=u.selectAll(".nv-noData").data([m]);return S.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),S.attr("x",i.left+y/2).attr("y",i.top+E/2).text(function(e){return e}),w}u.selectAll(".nv-noData").remove(),d=t.xScale(),v=t.yScale().clamp(!0);var T=u.selectAll("g.nv-wrap.nv-discreteBarWithAxes").data([e]),N=T.enter().append("g").attr("class","nvd3 nv-wrap nv-discreteBarWithAxes").append("g"),C=N.append("defs"),k=T.select("g");N.append("g").attr("class","nv-x nv-axis"),N.append("g").attr("class","nv-y nv-axis").append("g").attr("class","nv-zeroLine").append("line"),N.append("g").attr("class","nv-barsWrap"),k.attr("transform","translate("+i.left+","+i.top+")"),l&&k.select(".nv-y.nv-axis").attr("transform","translate("+y+",0)"),t.width(y).height(E);var L=k.select(".nv-barsWrap").datum(e.filter(function(e){return!e.disabled}));L.call(t),C.append("clipPath").attr("id","nv-x-label-clip-"+t.id()).append("rect"),k.select("#nv-x-label-clip-"+t.id()+" rect").attr("width",d.rangeBand()*(c?2:1)).attr("height",16).attr("x",-d.rangeBand()/(c?1:2));if(a){n.scale(d).ticks(y/100).tickSize(-E,0),k.select(".nv-x.nv-axis").attr("transform","translate(0,"+(v.range()[0]+(t.showValues()&&v.domain()[0]<0?16:0))+")"),k.select(".nv-x.nv-axis").call(n);var A=k.select(".nv-x.nv-axis").selectAll("g");c&&A.selectAll("text").attr("transform",function(e,t,n){return"translate(0,"+(n%2==0?"5":"17")+")"})}f&&(r.scale(v).ticks(E/36).tickSize(-y,0),k.select(".nv-y.nv-axis").call(r)),k.select(".nv-zeroLine line").attr("x1",0).attr("x2",y).attr("y1",v(0)).attr("y2",v(0)),g.on("tooltipShow",function(e){h&&b(e,p.parentNode)})}),w}var t=e.models.discreteBar(),n=e.models.axis(),r=e.models.axis(),i={top:15,right:10,bottom:50,left:60},s=null,o=null,u=e.utils.getColor(),a=!0,f=!0,l=!1,c=!1,h=!0,p=function(e,t,n,r,i){return"<h3>"+t+"</h3>"+"<p>"+n+"</p>"},d,v,m="No Data Available.",g=d3.dispatch("tooltipShow","tooltipHide","beforeUpdate"),y=0;n.orient("bottom").highlightZero(!1).showMaxMin(!1).tickFormat(function(e){return e}),r.orient(l?"right":"left").tickFormat(d3.format(",.1f"));var b=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),a=n.tickFormat()(t.x()(i.point,i.pointIndex)),f=r.tickFormat()(t.y()(i.point,i.pointIndex)),l=p(i.series.key,a,f,i,w);e.tooltip.show([o,u],l,i.value<0?"n":"s",null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+i.left,e.pos[1]+i.top],g.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){g.tooltipHide(e)}),g.on("tooltipHide",function(){h&&e.tooltip.cleanup()}),w.dispatch=g,w.discretebar=t,w.xAxis=n,w.yAxis=r,d3.rebind(w,t,"x","y","xDomain","yDomain","xRange","yRange","forceX","forceY","id","showValues","valueFormat"),w.options=e.utils.optionsFunc.bind(w),w.margin=function(e){return arguments.length?(i.top=typeof e.top!="undefined"?e.top:i.top,i.right=typeof e.right!="undefined"?e.right:i.right,i.bottom=typeof e.bottom!="undefined"?e.bottom:i.bottom,i.left=typeof e.left!="undefined"?e.left:i.left,w):i},w.width=function(e){return arguments.length?(s=e,w):s},w.height=function(e){return arguments.length?(o=e,w):o},w.color=function(n){return arguments.length?(u=e.utils.getColor(n),t.color(u),w):u},w.showXAxis=function(e){return arguments.length?(a=e,w):a},w.showYAxis=function(e){return arguments.length?(f=e,w):f},w.rightAlignYAxis=function(e){return arguments.length?(l=e,r.orient(e?"right":"left"),w):l},w.staggerLabels=function(e){return arguments.length?(c=e,w):c},w.tooltips=function(e){return arguments.length?(h=e,w):h},w.tooltipContent=function(e){return arguments.length?(p=e,w):p},w.noData=function(e){return arguments.length?(m=e,w):m},w.transitionDuration=function(e){return arguments.length?(y=e,w):y},w},e.models.distribution=function(){function l(e){return e.each(function(e){var a=n-(i==="x"?t.left+t.right:t.top+t.bottom),l=i=="x"?"y":"x",c=d3.select(this);f=f||u;var h=c.selectAll("g.nv-distribution").data([e]),p=h.enter().append("g").attr("class","nvd3 nv-distribution"),d=p.append("g"),v=h.select("g");h.attr("transform","translate("+t.left+","+t.top+")");var m=v.selectAll("g.nv-dist").data(function(e){return e},function(e){return e.key});m.enter().append("g"),m.attr("class",function(e,t){return"nv-dist nv-series-"+t}).style("stroke",function(e,t){return o(e,t)});var g=m.selectAll("line.nv-dist"+i).data(function(e){return e.values});g.enter().append("line").attr(i+"1",function(e,t){return f(s(e,t))}).attr(i+"2",function(e,t){return f(s(e,t))}),m.exit().selectAll("line.nv-dist"+i).attr(i+"1",function(e,t){return u(s(e,t))}).attr(i+"2",function(e,t){return u(s(e,t))}).style("stroke-opacity",0).remove(),g.attr("class",function(e,t){return"nv-dist"+i+" nv-dist"+i+"-"+t}).attr(l+"1",0).attr(l+"2",r),g.attr(i+"1",function(e,t){return u(s(e,t))}).attr(i+"2",function(e,t){return u(s(e,t))}),f=u.copy()}),l}var t={top:0,right:0,bottom:0,left:0},n=400,r=8,i="x",s=function(e){return e[i]},o=e.utils.defaultColor(),u=d3.scale.linear(),a,f;return l.options=e.utils.optionsFunc.bind(l),l.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,l):t},l.width=function(e){return arguments.length?(n=e,l):n},l.axis=function(e){return arguments.length?(i=e,l):i},l.size=function(e){return arguments.length?(r=e,l):r},l.getData=function(e){return arguments.length?(s=d3.functor(e),l):s},l.scale=function(e){return arguments.length?(u=e,l):u},l.color=function(t){return arguments.length?(o=e.utils.getColor(t),l):o},l},e.models.historicalBarChart=function(){function x(e){return e.each(function(d){var E=d3.select(this),T=this,N=(u||parseInt(E.style("width"))||960)-s.left-s.right,C=(a||parseInt(E.style("height"))||400)-s.top-s.bottom;x.update=function(){E.call(x)},x.container=this,g.disabled=d.map(function(e){return!!e.disabled});if(!y){var k;y={};for(k in g)g[k]instanceof Array?y[k]=g[k].slice(0):y[k]=g[k]}if(!d||!d.length||!d.filter(function(e){return e.values.length}).length){var L=E.selectAll(".nv-noData").data([b]);return L.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),L.attr("x",s.left+N/2).attr("y",s.top+C/2).text(function(e){return e}),x}E.selectAll(".nv-noData").remove(),v=t.xScale(),m=t.yScale();var A=E.selectAll("g.nv-wrap.nv-historicalBarChart").data([d]),O=A.enter().append("g").attr("class","nvd3 nv-wrap nv-historicalBarChart").append("g"),M=A.select("g");O.append("g").attr("class","nv-x nv-axis"),O.append("g").attr("class","nv-y nv-axis"),O.append("g").attr("class","nv-barsWrap"),O.append("g").attr("class","nv-legendWrap"),f&&(i.width(N),M.select(".nv-legendWrap").datum(d).call(i),s.top!=i.height()&&(s.top=i.height(),C=(a||parseInt(E.style("height"))||400)-s.top-s.bottom),A.select(".nv-legendWrap").attr("transform","translate(0,"+ -s.top+")")),A.attr("transform","translate("+s.left+","+s.top+")"),h&&M.select(".nv-y.nv-axis").attr("transform","translate("+N+",0)"),t.width(N).height(C).color(d.map(function(e,t){return e.color||o(e,t)}).filter(function(e,t){return!d[t].disabled}));var _=M.select(".nv-barsWrap").datum(d.filter(function(e){return!e.disabled}));_.call(t),l&&(n.scale(v).tickSize(-C,0),M.select(".nv-x.nv-axis").attr("transform","translate(0,"+m.range()[0]+")"),M.select(".nv-x.nv-axis").call(n)),c&&(r.scale(m).ticks(C/36).tickSize(-N,0),M.select(".nv-y.nv-axis").call(r)),i.dispatch.on("legendClick",function(t,n){t.disabled=!t.disabled,d.filter(function(e){return!e.disabled}).length||d.map(function(e){return e.disabled=!1,A.selectAll(".nv-series").classed("disabled",!1),e}),g.disabled=d.map(function(e){return!!e.disabled}),w.stateChange(g),e.call(x)}),i.dispatch.on("legendDblclick",function(e){d.forEach(function(e){e.disabled=!0}),e.disabled=!1,g.disabled=d.map(function(e){return!!e.disabled}),w.stateChange(g),x.update()}),w.on("tooltipShow",function(e){p&&S(e,T.parentNode)}),w.on("changeState",function(e){typeof e.disabled!="undefined"&&(d.forEach(function(t,n){t.disabled=e.disabled[n]}),g.disabled=e.disabled),x.update()})}),x}var t=e.models.historicalBar(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s={top:30,right:90,bottom:50,left:90},o=e.utils.defaultColor(),u=null,a=null,f=!1,l=!0,c=!0,h=!1,p=!0,d=function(e,t,n,r,i){return"<h3>"+e+"</h3>"+"<p>"+n+" at "+t+"</p>"},v,m,g={},y=null,b="No Data Available.",w=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),E=0;n.orient("bottom").tickPadding(7),r.orient(h?"right":"left");var S=function(i,s){if(s){var o=d3.select(s).select("svg"),u=o.node()?o.attr("viewBox"):null;if(u){u=u.split(" ");var a=parseInt(o.style("width"))/u[2];i.pos[0]=i.pos[0]*a,i.pos[1]=i.pos[1]*a}}var f=i.pos[0]+(s.offsetLeft||0),l=i.pos[1]+(s.offsetTop||0),c=n.tickFormat()(t.x()(i.point,i.pointIndex)),h=r.tickFormat()(t.y()(i.point,i.pointIndex)),p=d(i.series.key,c,h,i,x);e.tooltip.show([f,l],p,null,null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+s.left,e.pos[1]+s.top],w.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){w.tooltipHide(e)}),w.on("tooltipHide",function(){p&&e.tooltip.cleanup()}),x.dispatch=w,x.bars=t,x.legend=i,x.xAxis=n,x.yAxis=r,d3.rebind(x,t,"defined","isArea","x","y","size","xScale","yScale","xDomain","yDomain","xRange","yRange","forceX","forceY","interactive","clipEdge","clipVoronoi","id","interpolate","highlightPoint","clearHighlights","interactive"),x.options=e.utils.optionsFunc.bind(x),x.margin=function(e){return arguments.length?(s.top=typeof e.top!="undefined"?e.top:s.top,s.right=typeof e.right!="undefined"?e.right:s.right,s.bottom=typeof e.bottom!="undefined"?e.bottom:s.bottom,s.left=typeof e.left!="undefined"?e.left:s.left,x):s},x.width=function(e){return arguments.length?(u=e,x):u},x.height=function(e){return arguments.length?(a=e,x):a},x.color=function(t){return arguments.length?(o=e.utils.getColor(t),i.color(o),x):o},x.showLegend=function(e){return arguments.length?(f=e,x):f},x.showXAxis=function(e){return arguments.length?(l=e,x):l},x.showYAxis=function(e){return arguments.length?(c=e,x):c},x.rightAlignYAxis=function(e){return arguments.length?(h=e,r.orient(e?"right":"left"),x):h},x.tooltips=function(e){return arguments.length?(p=e,x):p},x.tooltipContent=function(e){return arguments.length?(d=e,x):d},x.state=function(e){return arguments.length?(g=e,x):g},x.defaultState=function(e){return arguments.length?(y=e,x):y},x.noData=function(e){return arguments.length?(b=e,x):b},x.transitionDuration=function(e){return arguments.length?(E=e,x):E},x},e.models.indentedTree=function(){function g(e){return e.each(function(e){function k(e,t,n){d3.event.stopPropagation();if(d3.event.shiftKey&&!n)return d3.event.shiftKey=!1,e.values&&e.values.forEach(function(e){(e.values||e._values)&&k(e,0,!0)}),!0;if(!O(e))return!0;e.values?(e._values=e.values,e.values=null):(e.values=e._values,e._values=null),g.update()}function L(e){return e._values&&e._values.length?h:e.values&&e.values.length?p:""}function A(e){return e._values&&e._values.length}function O(e){var t=e.values||e._values;return t&&t.length}var t=1,n=d3.select(this),i=d3.layout.tree().children(function(e){return e.values}).size([r,f]);g.update=function(){n.call(g)},e[0]||(e[0]={key:a});var s=i.nodes(e[0]),y=d3.select(this).selectAll("div").data([[s]]),b=y.enter().append("div").attr("class","nvd3 nv-wrap nv-indentedtree"),w=b.append("table"),E=y.select("table").attr("width","100%").attr("class",c);if(o){var S=w.append("thead"),x=S.append("tr");l.forEach(function(e){x.append("th").attr("width",e.width?e.width:"10%").style("text-align",e.type=="numeric"?"right":"left").append("span").text(e.label)})}var T=E.selectAll("tbody").data(function(e){return e});T.enter().append("tbody"),t=d3.max(s,function(e){return e.depth}),i.size([r,t*f]);var N=T.selectAll("tr").data(function(e){return e.filter(function(e){return u&&!e.children?u(e):!0})},function(e,t){return e.id||e.id||++m});N.exit().remove(),N.select("img.nv-treeicon").attr("src",L).classed("folded",A);var C=N.enter().append("tr");l.forEach(function(e,t){var n=C.append("td").style("padding-left",function(e){return(t?0:e.depth*f+12+(L(e)?0:16))+"px"},"important").style("text-align",e.type=="numeric"?"right":"left");t==0&&n.append("img").classed("nv-treeicon",!0).classed("nv-folded",A).attr("src",L).style("width","14px").style("height","14px").style("padding","0 1px").style("display",function(e){return L(e)?"inline-block":"none"}).on("click",k),n.each(function(n){!t&&v(n)?d3.select(this).append("a").attr("href",v).attr("class",d3.functor(e.classes)).append("span"):d3.select(this).append("span"),d3.select(this).select("span").attr("class",d3.functor(e.classes)).text(function(t){return e.format?t[e.key]?e.format(t[e.key]):"-":t[e.key]||"-"})}),e.showCount&&(n.append("span").attr("class","nv-childrenCount"),N.selectAll("span.nv-childrenCount").text(function(e){return e.values&&e.values.length||e._values&&e._values.length?"("+(e.values&&e.values.filter(function(e){return u?u(e):!0}).length||e._values&&e._values.filter(function(e){return u?u(e):!0}).length||0)+")":""}))}),N.order().on("click",function(e){d.elementClick({row:this,data:e,pos:[e.x,e.y]})}).on("dblclick",function(e){d.elementDblclick({row:this,data:e,pos:[e.x,e.y]})}).on("mouseover",function(e){d.elementMouseover({row:this,data:e,pos:[e.x,e.y]})}).on("mouseout",function(e){d.elementMouseout({row:this,data:e,pos:[e.x,e.y]})})}),g}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=e.utils.defaultColor(),s=Math.floor(Math.random()*1e4),o=!0,u=!1,a="No Data Available.",f=20,l=[{key:"key",label:"Name",type:"text"}],c=null,h="images/grey-plus.png",p="images/grey-minus.png",d=d3.dispatch("elementClick","elementDblclick","elementMouseover","elementMouseout"),v=function(e){return e.url},m=0;return g.options=e.utils.optionsFunc.bind(g),g.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,g):t},g.width=function(e){return arguments.length?(n=e,g):n},g.height=function(e){return arguments.length?(r=e,g):r},g.color=function(t){return arguments.length?(i=e.utils.getColor(t),scatter.color(i),g):i},g.id=function(e){return arguments.length?(s=e,g):s},g.header=function(e){return arguments.length?(o=e,g):o},g.noData=function(e){return arguments.length?(a=e,g):a},g.filterZero=function(e){return arguments.length?(u=e,g):u},g.columns=function(e){return arguments.length?(l=e,g):l},g.tableClass=function(e){return arguments.length?(c=e,g):c},g.iconOpen=function(e){return arguments.length?(h=e,g):h},g.iconClose=function(e){return arguments.length?(p=e,g):p},g.getUrl=function(e){return arguments.length?(v=e,g):v},g},e.models.legend=function(){function c(h){return h.each(function(c){var h=n-t.left-t.right,p=d3.select(this),d=p.selectAll("g.nv-legend").data([c]),v=d.enter().append("g").attr("class","nvd3 nv-legend").append("g"),m=d.select("g");d.attr("transform","translate("+t.left+","+t.top+")");var g=m.selectAll(".nv-series").data(function(e){return e}),y=g.enter().append("g").attr("class","nv-series").on("mouseover",function(e,t){l.legendMouseover(e,t)}).on("mouseout",function(e,t){l.legendMouseout(e,t)}).on("click",function(e,t){l.legendClick(e,t),a&&(f?(c.forEach(function(e){e.disabled=!0}),e.disabled=!1):(e.disabled=!e.disabled,c.every(function(e){return e.disabled})&&c.forEach(function(e){e.disabled=!1})),l.stateChange({disabled:c.map(function(e){return!!e.disabled})}))}).on("dblclick",function(e,t){l.legendDblclick(e,t),a&&(c.forEach(function(e){e.disabled=!0}),e.disabled=!1,l.stateChange({disabled:c.map(function(e){return!!e.disabled})}))});y.append("circle").style("stroke-width",2).attr("class","nv-legend-symbol").attr("r",5),y.append("text").attr("text-anchor","start").attr("class","nv-legend-text").attr("dy",".32em").attr("dx","8"),g.classed("disabled",function(e){return e.disabled}),g.exit().remove(),g.select("circle").style("fill",function(e,t){return e.color||s(e,t)}).style("stroke",function(e,t){return e.color||s(e,t)}),g.select("text").text(i);if(o){var b=[];g.each(function(t,n){var r=d3.select(this).select("text"),i;try{i=r.getComputedTextLength();if(i<=0)throw Error()}catch(s){i=e.utils.calcApproxTextWidth(r)}b.push(i+28)});var w=0,E=0,S=[];while(E<h&&w<b.length)S[w]=b[w],E+=b[w++];w===0&&(w=1);while(E>h&&w>1){S=[],w--;for(var x=0;x<b.length;x++)b[x]>(S[x%w]||0)&&(S[x%w]=b[x]);E=S.reduce(function(e,t,n,r){return e+t})}var T=[];for(var N=0,C=0;N<w;N++)T[N]=C,C+=S[N];g.attr("transform",function(e,t){return"translate("+T[t%w]+","+(5+Math.floor(t/w)*20)+")"}),u?m.attr("transform","translate("+(n-t.right-E)+","+t.top+")"):m.attr("transform","translate(0,"+t.top+")"),r=t.top+t.bottom+Math.ceil(b.length/w)*20}else{var k=5,L=5,A=0,O;g.attr("transform",function(e,r){var i=d3.select(this).select("text").node().getComputedTextLength()+28;return O=L,n<t.left+t.right+O+i&&(L=O=5,k+=20),L+=i,L>A&&(A=L),"translate("+O+","+k+")"}),m.attr("transform","translate("+(n-t.right-A)+","+t.top+")"),r=t.top+t.bottom+k+15}}),c}var t={top:5,right:0,bottom:5,left:0},n=400,r=20,i=function(e){return e.key},s=e.utils.defaultColor(),o=!0,u=!0,a=!0,f=!1,l=d3.dispatch("legendClick","legendDblclick","legendMouseover","legendMouseout","stateChange");return c.dispatch=l,c.options=e.utils.optionsFunc.bind(c),c.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,c):t},c.width=function(e){return arguments.length?(n=e,c):n},c.height=function(e){return arguments.length?(r=e,c):r},c.key=function(e){return arguments.length?(i=e,c):i},c.color=function(t){return arguments.length?(s=e.utils.getColor(t),c):s},c.align=function(e){return arguments.length?(o=e,c):o},c.rightAlign=function(e){return arguments.length?(u=e,c):u},c.updateState=function(e){return arguments.length?(a=e,c):a},c.radioButtonMode=function(e){return arguments.length?(f=e,c):f},c},e.models.line=function(){function m(g){return g.each(function(m){var g=r-n.left-n.right,b=i-n.top-n.bottom,w=d3.select(this);c=t.xScale(),h=t.yScale(),d=d||c,v=v||h;var E=w.selectAll("g.nv-wrap.nv-line").data([m]),S=E.enter().append("g").attr("class","nvd3 nv-wrap nv-line"),T=S.append("defs"),N=S.append("g"),C=E.select("g");N.append("g").attr("class","nv-groups"),N.append("g").attr("class","nv-scatterWrap"),E.attr("transform","translate("+n.left+","+n.top+")"),t.width(g).height(b);var k=E.select(".nv-scatterWrap");k.call(t),T.append("clipPath").attr("id","nv-edge-clip-"+t.id()).append("rect"),E.select("#nv-edge-clip-"+t.id()+" rect").attr("width",g).attr("height",b>0?b:0),C.attr("clip-path",l?"url(#nv-edge-clip-"+t.id()+")":""),k.attr("clip-path",l?"url(#nv-edge-clip-"+t.id()+")":"");var L=E.select(".nv-groups").selectAll(".nv-group").data(function(e){return e},function(e){return e.key});L.enter().append("g").style("stroke-opacity",1e-6).style("fill-opacity",1e-6),L.exit().remove(),L.attr("class",function(e,t){return"nv-group nv-series-"+t}).classed("hover",function(e){return e.hover}).style("fill",function(e,t){return s(e,t)}).style("stroke",function(e,t){return s(e,t)}),L.style("stroke-opacity",1).style("fill-opacity",.5);var A=L.selectAll("path.nv-area").data(function(e){return f(e)?[e]:[]});A.enter().append("path").attr("class","nv-area").attr("d",function(t){return d3.svg.area().interpolate(p).defined(a).x(function(t,n){return e.utils.NaNtoZero(d(o(t,n)))}).y0(function(t,n){return e.utils.NaNtoZero(v(u(t,n)))}).y1(function(e,t){return v(h.domain()[0]<=0?h.domain()[1]>=0?0:h.domain()[1]:h.domain()[0])}).apply(this,[t.values])}),L.exit().selectAll("path.nv-area").remove(),A.attr("d",function(t){return d3.svg.area().interpolate(p).defined(a).x(function(t,n){return e.utils.NaNtoZero(c(o(t,n)))}).y0(function(t,n){return e.utils.NaNtoZero(h(u(t,n)))}).y1(function(e,t){return h(h.domain()[0]<=0?h.domain()[1]>=0?0:h.domain()[1]:h.domain()[0])}).apply(this,[t.values])});var O=L.selectAll("path.nv-line").data(function(e){return[e.values]});O.enter().append("path").attr("class","nv-line").attr("d",d3.svg.line().interpolate(p).defined(a).x(function(t,n){return e.utils.NaNtoZero(d(o(t,n)))}).y(function(t,n){return e.utils.NaNtoZero(v(u(t,n)))})),O.attr("d",d3.svg.line().interpolate(p).defined(a).x(function(t,n){return e.utils.NaNtoZero(c(o(t,n)))}).y(function(t,n){return e.utils.NaNtoZero(h(u(t,n)))})),d=c.copy(),v=h.copy()}),m}var t=e.models.scatter(),n={top:0,right:0,bottom:0,left:0},r=960,i=500,s=e.utils.defaultColor(),o=function(e){return e.x},u=function(e){return e.y},a=function(e,t){return!isNaN(u(e,t))&&u(e,t)!==null},f=function(e){return e.area},l=!1,c,h,p="linear";t.size(16).sizeDomain([16,256]);var d,v;return m.dispatch=t.dispatch,m.scatter=t,d3.rebind(m,t,"id","interactive","size","xScale","yScale","zScale","xDomain","yDomain","xRange","yRange","sizeDomain","forceX","forceY","forceSize","clipVoronoi","useVoronoi","clipRadius","padData","highlightPoint","clearHighlights"),m.options=e.utils.optionsFunc.bind(m),m.margin=function(e){return arguments.length?(n.top=typeof e.top!="undefined"?e.top:n.top,n.right=typeof e.right!="undefined"?e.right:n.right,n.bottom=typeof e.bottom!="undefined"?e.bottom:n.bottom,n.left=typeof e.left!="undefined"?e.left:n.left,m):n},m.width=function(e){return arguments.length?(r=e,m):r},m.height=function(e){return arguments.length?(i=e,m):i},m.x=function(e){return arguments.length?(o=e,t.x(e),m):o},m.y=function(e){return arguments.length?(u=e,t.y(e),m):u},m.clipEdge=function(e){return arguments.length?(l=e,m):l},m.color=function(n){return arguments.length?(s=e.utils.getColor(n),t.color(s),m):s},m.interpolate=function(e){return arguments.length?(p=e,m):p},m.defined=function(e){return arguments.length?(a=e,m):a},m.isArea=function(e){return arguments.length?(f=d3.functor(e),m):f},m},e.models.lineChart=function(){function N(m){return m.each(function(m){var x=d3.select(this),C=this,k=(a||parseInt(x.style("width"))||960)-o.left-o.right,L=(f||parseInt(x.style("height"))||400)-o.top-o.bottom;N.update=function(){x.call(N)},N.container=this,b.disabled=m.map(function(e){return!!e.disabled});if(!w){var A;w={};for(A in b)b[A]instanceof Array?w[A]=b[A].slice(0):w[A]=b[A]}if(!m||!m.length||!m.filter(function(e){return e.values.length}).length){var O=x.selectAll(".nv-noData").data([E]);return O.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),O.attr("x",o.left+k/2).attr("y",o.top+L/2).text(function(e){return e}),N}x.selectAll(".nv-noData").remove(),g=t.xScale(),y=t.yScale();var M=x.selectAll("g.nv-wrap.nv-lineChart").data([m]),_=M.enter().append("g").attr("class","nvd3 nv-wrap nv-lineChart").append("g"),D=M.select("g");_.append("rect").style("opacity",0),_.append("g").attr("class","nv-x nv-axis"),_.append("g").attr("class","nv-y nv-axis"),_.append("g").attr("class","nv-linesWrap"),_.append("g").attr("class","nv-legendWrap"),_.append("g").attr("class","nv-interactive"),D.select("rect").attr("width",k).attr("height",L>0?L:0),l&&(i.width(k),D.select(".nv-legendWrap").datum(m).call(i),o.top!=i.height()&&(o.top=i.height(),L=(f||parseInt(x.style("height"))||400)-o.top-o.bottom),M.select(".nv-legendWrap").attr("transform","translate(0,"+ -o.top+")")),M.attr("transform","translate("+o.left+","+o.top+")"),p&&D.select(".nv-y.nv-axis").attr("transform","translate("+k+",0)"),d&&(s.width(k).height(L).margin({left:o.left,top:o.top}).svgContainer(x).xScale(g),M.select(".nv-interactive").call(s)),t.width(k).height(L).color(m.map(function(e,t){return e.color||u(e,t)}).filter(function(e,t){return!m[t].disabled}));var P=D.select(".nv-linesWrap").datum(m.filter(function(e){return!e.disabled}));P.call(t),c&&(n.scale(g).ticks(k/100).tickSize(-L,0),D.select(".nv-x.nv-axis").attr("transform","translate(0,"+y.range()[0]+")"),D.select(".nv-x.nv-axis").call(n)),h&&(r.scale(y).ticks(L/36).tickSize(-k,0),D.select(".nv-y.nv-axis").call(r)),i.dispatch.on("stateChange",function(e){b=e,S.stateChange(b),N.update()}),s.dispatch.on("elementMousemove",function(i){t.clearHighlights();var a,f,l,c=[];m.filter(function(e,t){return e.seriesIndex=t,!e.disabled}).forEach(function(n,r){f=e.interactiveBisect(n.values,i.pointXValue,N.x()),t.highlightPoint(r,f,!0);var s=n.values[f];if(typeof s=="undefined")return;typeof a=="undefined"&&(a=s),typeof l=="undefined"&&(l=N.xScale()(N.x()(s,f))),c.push({key:n.key,value:N.y()(s,f),color:u(n,n.seriesIndex)})});if(c.length>2){var h=N.yScale().invert(i.mouseY),p=Math.abs(N.yScale().domain()[0]-N.yScale().domain()[1]),d=.03*p,g=e.nearestValueIndex(c.map(function(e){return e.value}),h,d);g!==null&&(c[g].highlight=!0)}var y=n.tickFormat()(N.x()(a,f));s.tooltip.position({left:l+o.left,top:i.mouseY+o.top}).chartContainer(C.parentNode).enabled(v).valueFormatter(function(e,t){return r.tickFormat()(e)}).data({value:y,series:c})(),s.renderGuideLine(l)}),s.dispatch.on("elementMouseout",function(e){S.tooltipHide(),t.clearHighlights()}),S.on("tooltipShow",function(e){v&&T(e,C.parentNode)}),S.on("changeState",function(e){typeof e.disabled!="undefined"&&m.length===e.disabled.length&&(m.forEach(function(t,n){t.disabled=e.disabled[n]}),b.disabled=e.disabled),N.update()})}),N}var t=e.models.line(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.interactiveGuideline(),o={top:30,right:20,bottom:50,left:60},u=e.utils.defaultColor(),a=null,f=null,l=!0,c=!0,h=!0,p=!1,d=!1,v=!0,m=function(e,t,n,r,i){return"<h3>"+e+"</h3>"+"<p>"+n+" at "+t+"</p>"},g,y,b={},w=null,E="No Data Available.",S=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),x=0;n.orient("bottom").tickPadding(7),r.orient(p?"right":"left");var T=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),a=n.tickFormat()(t.x()(i.point,i.pointIndex)),f=r.tickFormat()(t.y()(i.point,i.pointIndex)),l=m(i.series.key,a,f,i,N);e.tooltip.show([o,u],l,null,null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+o.left,e.pos[1]+o.top],S.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){S.tooltipHide(e)}),S.on("tooltipHide",function(){v&&e.tooltip.cleanup()}),N.dispatch=S,N.lines=t,N.legend=i,N.xAxis=n,N.yAxis=r,N.interactiveLayer=s,d3.rebind(N,t,"defined","isArea","x","y","size","xScale","yScale","xDomain","yDomain","xRange","yRange","forceX","forceY","interactive","clipEdge","clipVoronoi","useVoronoi","id","interpolate"),N.options=e.utils.optionsFunc.bind(N),N.margin=function(e){return arguments.length?(o.top=typeof e.top!="undefined"?e.top:o.top,o.right=typeof e.right!="undefined"?e.right:o.right,o.bottom=typeof e.bottom!="undefined"?e.bottom:o.bottom,o.left=typeof e.left!="undefined"?e.left:o.left,N):o},N.width=function(e){return arguments.length?(a=e,N):a},N.height=function(e){return arguments.length?(f=e,N):f},N.color=function(t){return arguments.length?(u=e.utils.getColor(t),i.color(u),N):u},N.showLegend=function(e){return arguments.length?(l=e,N):l},N.showXAxis=function(e){return arguments.length?(c=e,N):c},N.showYAxis=function(e){return arguments.length?(h=e,N):h},N.rightAlignYAxis=function(e){return arguments.length?(p=e,r.orient(e?"right":"left"),N):p},N.useInteractiveGuideline=function(e){return arguments.length?(d=e,e===!0&&(N.interactive(!1),N.useVoronoi(!1)),N):d},N.tooltips=function(e){return arguments.length?(v=e,N):v},N.tooltipContent=function(e){return arguments.length?(m=e,N):m},N.state=function(e){return arguments.length?(b=e,N):b},N.defaultState=function(e){return arguments.length?(w=e,N):w},N.noData=function(e){return arguments.length?(E=e,N):E},N.transitionDuration=function(e){return arguments.length?(x=e,N):x},N},e.models.linePlusBarChart=function(){function T(e){return e.each(function(e){var l=d3.select(this),c=this,v=(a||parseInt(l.style("width"))||960)-u.left-u.right,N=(f||parseInt(l.style("height"))||400)-u.top-u.bottom;T.update=function(){l.call(T)},b.disabled=e.map(function(e){return!!e.disabled});if(!w){var C;w={};for(C in b)b[C]instanceof Array?w[C]=b[C].slice(0):w[C]=b[C]}if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var k=l.selectAll(".nv-noData").data([E]);return k.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),k.attr("x",u.left+v/2).attr("y",u.top+N/2).text(function(e){return e}),T}l.selectAll(".nv-noData").remove();var L=e.filter(function(e){return!e.disabled&&e.bar}),A=e.filter(function(e){return!e.bar});m=A.filter(function(e){return!e.disabled}).length&&A.filter(function(e){return!e.disabled})[0].values.length?t.xScale():n.xScale(),g=n.yScale(),y=t.yScale();var O=d3.select(this).selectAll("g.nv-wrap.nv-linePlusBar").data([e]),M=O.enter().append("g").attr("class","nvd3 nv-wrap nv-linePlusBar").append("g"),_=O.select("g");M.append("g").attr("class","nv-x nv-axis"),M.append("g").attr("class","nv-y1 nv-axis"),M.append("g").attr("class","nv-y2 nv-axis"),M.append("g").attr("class","nv-barsWrap"),M.append("g").attr("class","nv-linesWrap"),M.append("g").attr("class","nv-legendWrap"),p&&(o.width(v/2),_.select(".nv-legendWrap").datum(e.map(function(e){return e.originalKey=e.originalKey===undefined?e.key:e.originalKey,e.key=e.originalKey+(e.bar?" (left axis)":" (right axis)"),e})).call(o),u.top!=o.height()&&(u.top=o.height(),N=(f||parseInt(l.style("height"))||400)-u.top-u.bottom),_.select(".nv-legendWrap").attr("transform","translate("+v/2+","+ -u.top+")")),O.attr("transform","translate("+u.left+","+u.top+")"),t.width(v).height(N).color(e.map(function(e,t){return e.color||h(e,t)}).filter(function(t,n){return!e[n].disabled&&!e[n].bar})),n.width(v).height(N).color(e.map(function(e,t){return e.color||h(e,t)}).filter(function(t,n){return!e[n].disabled&&e[n].bar}));var D=_.select(".nv-barsWrap").datum(L.length?L:[{values:[]}]),P=_.select(".nv-linesWrap").datum(A[0]&&!A[0].disabled?A:[{values:[]}]);d3.transition(D).call(n),d3.transition(P).call(t),r.scale(m).ticks(v/100).tickSize(-N,0),_.select(".nv-x.nv-axis").attr("transform","translate(0,"+g.range()[0]+")"),d3.transition(_.select(".nv-x.nv-axis")).call(r),i.scale(g).ticks(N/36).tickSize(-v,0),d3.transition(_.select(".nv-y1.nv-axis")).style("opacity",L.length?1:0).call(i),s.scale(y).ticks(N/36).tickSize(L.length?0:-v,0),_.select(".nv-y2.nv-axis").style("opacity",A.length?1:0).attr("transform","translate("+v+",0)"),d3.transition(_.select(".nv-y2.nv-axis")).call(s),o.dispatch.on("stateChange",function(e){b=e,S.stateChange(b),T.update()}),S.on("tooltipShow",function(e){d&&x(e,c.parentNode)}),S.on("changeState",function(t){typeof t.disabled!="undefined"&&(e.forEach(function(e,n){e.disabled=t.disabled[n]}),b.disabled=t.disabled),T.update()})}),T}var t=e.models.line(),n=e.models.historicalBar(),r=e.models.axis(),i=e.models.axis(),s=e.models.axis(),o=e.models.legend(),u={top:30,right:60,bottom:50,left:60},a=null,f=null,l=function(e){return e.x},c=function(e){return e.y},h=e.utils.defaultColor(),p=!0,d=!0,v=function(e,t,n,r,i){return"<h3>"+e+"</h3>"+"<p>"+n+" at "+t+"</p>"},m,g,y,b={},w=null,E="No Data Available.",S=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState");n.padData(!0),t.clipEdge(!1).padData(!0),r.orient("bottom").tickPadding(7).highlightZero(!1),i.orient("left"),s.orient("right");var x=function(n,o){var u=n.pos[0]+(o.offsetLeft||0),a=n.pos[1]+(o.offsetTop||0),f=r.tickFormat()(t.x()(n.point,n.pointIndex)),l=(n.series.bar?i:s).tickFormat()(t.y()(n.point,n.pointIndex)),c=v(n.series.key,f,l,n,T);e.tooltip.show([u,a],c,n.value<0?"n":"s",null,o)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+u.left,e.pos[1]+u.top],S.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){S.tooltipHide(e)}),n.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+u.left,e.pos[1]+u.top],S.tooltipShow(e)}),n.dispatch.on("elementMouseout.tooltip",function(e){S.tooltipHide(e)}),S.on("tooltipHide",function(){d&&e.tooltip.cleanup()}),T.dispatch=S,T.legend=o,T.lines=t,T.bars=n,T.xAxis=r,T.y1Axis=i,T.y2Axis=s,d3.rebind(T,t,"defined","size","clipVoronoi","interpolate"),T.options=e.utils.optionsFunc.bind(T),T.x=function(e){return arguments.length?(l=e,t.x(e),n.x(e),T):l},T.y=function(e){return arguments.length?(c=e,t.y(e),n.y(e),T):c},T.margin=function(e){return arguments.length?(u.top=typeof e.top!="undefined"?e.top:u.top,u.right=typeof e.right!="undefined"?e.right:u.right,u.bottom=typeof e.bottom!="undefined"?e.bottom:u.bottom,u.left=typeof e.left!="undefined"?e.left:u.left,T):u},T.width=function(e){return arguments.length?(a=e,T):a},T.height=function(e){return arguments.length?(f=e,T):f},T.color=function(t){return arguments.length?(h=e.utils.getColor(t),o.color(h),T):h},T.showLegend=function(e){return arguments.length?(p=e,T):p},T.tooltips=function(e){return arguments.length?(d=e,T):d},T.tooltipContent=function(e){return arguments.length?(v=e,T):v},T.state=function(e){return arguments.length?(b=e,T):b},T.defaultState=function(e){return arguments.length?(w=e,T):w},T.noData=function(e){return arguments.length?(E=e,T):E},T},e.models.lineWithFocusChart=function(){function k(e){return e.each(function(e){function R(e){var t=+(e=="e"),n=t?1:-1,r=O/3;return"M"+.5*n+","+r+"A6,6 0 0 "+t+" "+6.5*n+","+(r+6)+"V"+(2*r-6)+"A6,6 0 0 "+t+" "+.5*n+","+2*r+"Z"+"M"+2.5*n+","+(r+8)+"V"+(2*r-8)+"M"+4.5*n+","+(r+8)+"V"+(2*r-8)}function U(){a.empty()||a.extent(w),F.data([a.empty()?g.domain():w]).each(function(e,t){var n=g(e[0])-v.range()[0],r=v.range()[1]-g(e[1]);d3.select(this).select(".left").attr("width",n<0?0:n),d3.select(this).select(".right").attr("x",g(e[1])).attr("width",r<0?0:r)})}function z(){w=a.empty()?null:a.extent();var n=a.empty()?g.domain():a.extent();if(Math.abs(n[0]-n[1])<=1)return;T.brush({extent:n,brush:a}),U();var s=P.select(".nv-focus .nv-linesWrap").datum(e.filter(function(e){return!e.disabled}).map(function(e,r){return{key:e.key,values:e.values.filter(function(e,r){return t.x()(e,r)>=n[0]&&t.x()(e,r)<=n[1]})}}));s.call(t),P.select(".nv-focus .nv-x.nv-axis").call(r),P.select(".nv-focus .nv-y.nv-axis").call(i)}var S=d3.select(this),N=this,L=(h||parseInt(S.style("width"))||960)-f.left-f.right,A=(p||parseInt(S.style("height"))||400)-f.top-f.bottom-d,O=d-l.top-l.bottom;k.update=function(){S.call(k)},k.container=this;if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var M=S.selectAll(".nv-noData").data([x]);return M.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),M.attr("x",f.left+L/2).attr("y",f.top+A/2).text(function(e){return e}),k}S.selectAll(".nv-noData").remove(),v=t.xScale(),m=t.yScale(),g=n.xScale(),y=n.yScale();var _=S.selectAll("g.nv-wrap.nv-lineWithFocusChart").data([e]),D=_.enter().append("g").attr("class","nvd3 nv-wrap nv-lineWithFocusChart").append("g"),P=_.select("g");D.append("g").attr("class","nv-legendWrap");var H=D.append("g").attr("class","nv-focus");H.append("g").attr("class","nv-x nv-axis"),H.append("g").attr("class","nv-y nv-axis"),H.append("g").attr("class","nv-linesWrap");var B=D.append("g").attr("class","nv-context");B.append("g").attr("class","nv-x nv-axis"),B.append("g").attr("class","nv-y nv-axis"),B.append("g").attr("class","nv-linesWrap"),B.append("g").attr("class","nv-brushBackground"),B.append("g").attr("class","nv-x nv-brush"),b&&(u.width(L),P.select(".nv-legendWrap").datum(e).call(u),f.top!=u.height()&&(f.top=u.height(),A=(p||parseInt(S.style("height"))||400)-f.top-f.bottom-d),P.select(".nv-legendWrap").attr("transform","translate(0,"+ -f.top+")")),_.attr("transform","translate("+f.left+","+f.top+")"),t.width(L).height(A).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),n.defined(t.defined()).width(L).height(O).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),P.select(".nv-context").attr("transform","translate(0,"+(A+f.bottom+l.top)+")");var j=P.select(".nv-context .nv-linesWrap").datum(e.filter(function(e){return!e.disabled}));d3.transition(j).call(n),r.scale(v).ticks(L/100).tickSize(-A,0),i.scale(m).ticks(A/36).tickSize(-L,0),P.select(".nv-focus .nv-x.nv-axis").attr("transform","translate(0,"+A+")"),a.x(g).on("brush",function(){var e=k.transitionDuration();k.transitionDuration(0),z(),k.transitionDuration(e)}),w&&a.extent(w);var F=P.select(".nv-brushBackground").selectAll("g").data([w||a.extent()]),I=F.enter().append("g");I.append("rect").attr("class","left").attr("x",0).attr("y",0).attr("height",O),I.append("rect").attr("class","right").attr("x",0).attr("y",0).attr("height",O);var q=P.select(".nv-x.nv-brush").call(a);q.selectAll("rect").attr("height",O),q.selectAll(".resize").append("path").attr("d",R),z(),s.scale(g).ticks(L/100).tickSize(-O,0),P.select(".nv-context .nv-x.nv-axis").attr("transform","translate(0,"+y.range()[0]+")"),d3.transition(P.select(".nv-context .nv-x.nv-axis")).call(s),o.scale(y).ticks(O/36).tickSize(-L,0),d3.transition(P.select(".nv-context .nv-y.nv-axis")).call(o),P.select(".nv-context .nv-x.nv-axis").attr("transform","translate(0,"+y.range()[0]+")"),u.dispatch.on("stateChange",function(e){k.update()}),T.on("tooltipShow",function(e){E&&C(e,N.parentNode)})}),k}var t=e.models.line(),n=e.models.line(),r=e.models.axis(),i=e.models.axis(),s=e.models.axis(),o=e.models.axis(),u=e.models.legend(),a=d3.svg.brush(),f={top:30,right:30,bottom:30,left:60},l={top:0,right:30,bottom:20,left:60},c=e.utils.defaultColor(),h=null,p=null,d=100,v,m,g,y,b=!0,w=null,E=!0,S=function(e,t,n,r,i){return"<h3>"+e+"</h3>"+"<p>"+n+" at "+t+"</p>"},x="No Data Available.",T=d3.dispatch("tooltipShow","tooltipHide","brush"),N=0;t.clipEdge(!0),n.interactive(!1),r.orient("bottom").tickPadding(5),i.orient("left"),s.orient("bottom").tickPadding(5),o.orient("left");var C=function(n,s){var o=n.pos[0]+(s.offsetLeft||0),u=n.pos[1]+(s.offsetTop||0),a=r.tickFormat()(t.x()(n.point,n.pointIndex)),f=i.tickFormat()(t.y()(n.point,n.pointIndex)),l=S(n.series.key,a,f,n,k);e.tooltip.show([o,u],l,null,null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+f.left,e.pos[1]+f.top],T.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),T.on("tooltipHide",function(){E&&e.tooltip.cleanup()}),k.dispatch=T,k.legend=u,k.lines=t,k.lines2=n,k.xAxis=r,k.yAxis=i,k.x2Axis=s,k.y2Axis=o,d3.rebind(k,t,"defined","isArea","size","xDomain","yDomain","xRange","yRange","forceX","forceY","interactive","clipEdge","clipVoronoi","id"),k.options=e.utils.optionsFunc.bind(k),k.x=function(e){return arguments.length?(t.x(e),n.x(e),k):t.x},k.y=function(e){return arguments.length?(t.y(e),n.y(e),k):t.y},k.margin=function(e){return arguments.length?(f.top=typeof e.top!="undefined"?e.top:f.top,f.right=typeof e.right!="undefined"?e.right:f.right,f.bottom=typeof e.bottom!="undefined"?e.bottom:f.bottom,f.left=typeof e.left!="undefined"?e.left:f.left,k):f},k.margin2=function(e){return arguments.length?(l=e,k):l},k.width=function(e){return arguments.length?(h=e,k):h},k.height=function(e){return arguments.length?(p=e,k):p},k.height2=function(e){return arguments.length?(d=e,k):d},k.color=function(t){return arguments.length?(c=e.utils.getColor(t),u.color(c),k):c},k.showLegend=function(e){return arguments.length?(b=e,k):b},k.tooltips=function(e){return arguments.length?(E=e,k):E},k.tooltipContent=function(e){return arguments.length?(S=e,k):S},k.interpolate=function(e){return arguments.length?(t.interpolate(e),n.interpolate(e),k):t.interpolate()},k.noData=function(e){return arguments.length?(x=e,k):x},k.xTickFormat=function(e){return arguments.length?(r.tickFormat(e),s.tickFormat(e),k):r.tickFormat()},k.yTickFormat=function(e){return arguments.length?(i.tickFormat(e),o.tickFormat(e),k):i.tickFormat()},k.brushExtent=function(e){return arguments.length?(w=e,k):w},k.transitionDuration=function(e){return arguments.length?(N=e,k):N},k},e.models.linePlusBarWithFocusChart=function(){function B(e){return e.each(function(e){function tt(e){var t=+(e=="e"),n=t?1:-1,r=I/3;return"M"+.5*n+","+r+"A6,6 0 0 "+t+" "+6.5*n+","+(r+6)+"V"+(2*r-6)+"A6,6 0 0 "+t+" "+.5*n+","+2*r+"Z"+"M"+2.5*n+","+(r+8)+"V"+(2*r-8)+"M"+4.5*n+","+(r+8)+"V"+(2*r-8)}function nt(){h.empty()||h.extent(x),Y.data([h.empty()?k.domain():x]).each(function(e,t){var n=k(e[0])-k.range()[0],r=k.range()[1]-k(e[1]);d3.select(this).select(".left").attr("width",n<0?0:n),d3.select(this).select(".right").attr("x",k(e[1])).attr("width",r<0?0:r)})}function rt(){x=h.empty()?null:h.extent(),S=h.empty()?k.domain():h.extent(),D.brush({extent:S,brush:h}),nt(),r.width(j).height(F).color(e.map(function(e,t){return e.color||w(e,t)}).filter(function(t,n){return!e[n].disabled&&e[n].bar})),t.width(j).height(F).color(e.map(function(e,t){return e.color||w(e,t)}).filter(function(t,n){return!e[n].disabled&&!e[n].bar}));var n=$.select(".nv-focus .nv-barsWrap").datum(R.length?R.map(function(e,t){return{key:e.key,values:e.values.filter(function(e,t){return r.x()(e,t)>=S[0]&&r.x()(e,t)<=S[1]})}}):[{values:[]}]),i=$.select(".nv-focus .nv-linesWrap").datum(U[0].disabled?[{values:[]}]:U.map(function(e,n){return{key:e.key,values:e.values.filter(function(e,n){return t.x()(e,n)>=S[0]&&t.x()(e,n)<=S[1]})}}));R.length?C=r.xScale():C=t.xScale(),s.scale(C).ticks(j/100).tickSize(-F,0),s.domain([Math.ceil(S[0]),Math.floor(S[1])]),$.select(".nv-x.nv-axis").call(s),n.call(r),i.call(t),$.select(".nv-focus .nv-x.nv-axis").attr("transform","translate(0,"+L.range()[0]+")"),u.scale(L).ticks(F/36).tickSize(-j,0),$.select(".nv-focus .nv-y1.nv-axis").style("opacity",R.length?1:0),a.scale(A).ticks(F/36).tickSize(R.length?0:-j,0),$.select(".nv-focus .nv-y2.nv-axis").style("opacity",U.length?1:0).attr("transform","translate("+C.range()[1]+",0)"),$.select(".nv-focus .nv-y1.nv-axis").call(u),$.select(".nv-focus .nv-y2.nv-axis").call(a)}var N=d3.select(this),P=this,j=(v||parseInt(N.style("width"))||960)-p.left-p.right,F=(m||parseInt(N.style("height"))||400)-p.top-p.bottom-g,I=g-d.top-d.bottom;B.update=function(){N.call(B)},B.container=this;if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var q=N.selectAll(".nv-noData").data([_]);return q.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),q.attr("x",p.left+j/2).attr("y",p.top+F/2).text(function(e){return e}),B}N.selectAll(".nv-noData").remove();var R=e.filter(function(e){return!e.disabled&&e.bar}),U=e.filter(function(e){return!e.bar});C=r.xScale(),k=o.scale(),L=r.yScale(),A=t.yScale(),O=i.yScale(),M=n.yScale();var z=e.filter(function(e){return!e.disabled&&e.bar}).map(function(e){return e.values.map(function(e,t){return{x:y(e,t),y:b(e,t)}})}),W=e.filter(function(e){return!e.disabled&&!e.bar}).map(function(e){return e.values.map(function(e,t){return{x:y(e,t),y:b(e,t)}})});C.range([0,j]),k.domain(d3.extent(d3.merge(z.concat(W)),function(e){return e.x})).range([0,j]);var X=N.selectAll("g.nv-wrap.nv-linePlusBar").data([e]),V=X.enter().append("g").attr("class","nvd3 nv-wrap nv-linePlusBar").append("g"),$=X.select("g");V.append("g").attr("class","nv-legendWrap");var J=V.append("g").attr("class","nv-focus");J.append("g").attr("class","nv-x nv-axis"),J.append("g").attr("class","nv-y1 nv-axis"),J.append("g").attr("class","nv-y2 nv-axis"),J.append("g").attr("class","nv-barsWrap"),J.append("g").attr("class","nv-linesWrap");var K=V.append("g").attr("class","nv-context");K.append("g").attr("class","nv-x nv-axis"),K.append("g").attr("class","nv-y1 nv-axis"),K.append("g").attr("class","nv-y2 nv-axis"),K.append("g").attr("class","nv-barsWrap"),K.append("g").attr("class","nv-linesWrap"),K.append("g").attr("class","nv-brushBackground"),K.append("g").attr("class","nv-x nv-brush"),E&&(c.width(j/2),$.select(".nv-legendWrap").datum(e.map(function(e){return e.originalKey=e.originalKey===undefined?e.key:e.originalKey,e.key=e.originalKey+(e.bar?" (left axis)":" (right axis)"),e})).call(c),p.top!=c.height()&&(p.top=c.height(),F=(m||parseInt(N.style("height"))||400)-p.top-p.bottom-g),$.select(".nv-legendWrap").attr("transform","translate("+j/2+","+ -p.top+")")),X.attr("transform","translate("+p.left+","+p.top+")"),i.width(j).height(I).color(e.map(function(e,t){return e.color||w(e,t)}).filter(function(t,n){return!e[n].disabled&&e[n].bar})),n.width(j).height(I).color(e.map(function(e,t){return e.color||w(e,t)}).filter(function(t,n){return!e[n].disabled&&!e[n].bar}));var Q=$.select(".nv-context .nv-barsWrap").datum(R.length?R:[{values:[]}]),G=$.select(".nv-context .nv-linesWrap").datum(U[0].disabled?[{values:[]}]:U);$.select(".nv-context").attr("transform","translate(0,"+(F+p.bottom+d.top)+")"),Q.call(i),G.call(n),h.x(k).on("brush",rt),x&&h.extent(x);var Y=$.select(".nv-brushBackground").selectAll("g").data([x||h.extent()]),Z=Y.enter().append("g");Z.append("rect").attr("class","left").attr("x",0).attr("y",0).attr("height",I),Z.append("rect").attr("class","right").attr("x",0).attr("y",0).attr("height",I);var et=$.select(".nv-x.nv-brush").call(h);et.selectAll("rect").attr("height",I),et.selectAll(".resize").append("path").attr("d",tt),o.ticks(j/100).tickSize(-I,0),$.select(".nv-context .nv-x.nv-axis").attr("transform","translate(0,"+O.range()[0]+")"),$.select(".nv-context .nv-x.nv-axis").call(o),f.scale(O).ticks(I/36).tickSize(-j,0),$.select(".nv-context .nv-y1.nv-axis").style("opacity",R.length?1:0).attr("transform","translate(0,"+k.range()[0]+")"),$.select(".nv-context .nv-y1.nv-axis").call(f),l.scale(M).ticks(I/36).tickSize(R.length?0:-j,0),$.select(".nv-context .nv-y2.nv-axis").style("opacity",U.length?1:0).attr("transform","translate("+k.range()[1]+",0)"),$.select(".nv-context .nv-y2.nv-axis").call(l),c.dispatch.on("stateChange",function(e){B.update()}),D.on("tooltipShow",function(e){T&&H(e,P.parentNode)}),rt()}),B}var t=e.models.line(),n=e.models.line(),r=e.models.historicalBar(),i=e.models.historicalBar(),s=e.models.axis(),o=e.models.axis(),u=e.models.axis(),a=e.models.axis(),f=e.models.axis(),l=e.models.axis(),c=e.models.legend(),h=d3.svg.brush(),p={top:30,right:30,bottom:30,left:60},d={top:0,right:30,bottom:20,left:60},v=null,m=null,g=100,y=function(e){return e.x},b=function(e){return e.y},w=e.utils.defaultColor(),E=!0,S,x=null,T=!0,N=function(e,t,n,r,i){return"<h3>"+e+"</h3>"+"<p>"+n+" at "+t+"</p>"},C,k,L,A,O,M,_="No Data Available.",D=d3.dispatch("tooltipShow","tooltipHide","brush"),P=0;t.clipEdge(!0),n.interactive(!1),s.orient("bottom").tickPadding(5),u.orient("left"),a.orient("right"),o.orient("bottom").tickPadding(5),f.orient("left"),l.orient("right");var H=function(n,r){S&&(n.pointIndex+=Math.ceil(S[0]));var i=n.pos[0]+(r.offsetLeft||0),o=n.pos[1]+(r.offsetTop||0),f=s.tickFormat()(t.x()(n.point,n.pointIndex)),l=(n.series.bar?u:a).tickFormat()(t.y()(n.point,n.pointIndex)),c=N(n.series.key,f,l,n,B);e.tooltip.show([i,o],c,n.value<0?"n":"s",null,r)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+p.left,e.pos[1]+p.top],D.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){D.tooltipHide(e)}),r.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+p.left,e.pos[1]+p.top],D.tooltipShow(e)}),r.dispatch.on("elementMouseout.tooltip",function(e){D.tooltipHide(e)}),D.on("tooltipHide",function(){T&&e.tooltip.cleanup()}),B.dispatch=D,B.legend=c,B.lines=t,B.lines2=n,B.bars=r,B.bars2=i,B.xAxis=s,B.x2Axis=o,B.y1Axis=u,B.y2Axis=a,B.y3Axis=f,B.y4Axis=l,d3.rebind(B,t,"defined","size","clipVoronoi","interpolate"),B.options=e.utils.optionsFunc.bind(B),B.x=function(e){return arguments.length?(y=e,t.x(e),r.x(e),B):y},B.y=function(e){return arguments.length?(b=e,t.y(e),r.y(e),B):b},B.margin=function(e){return arguments.length?(p.top=typeof e.top!="undefined"?e.top:p.top,p.right=typeof e.right!="undefined"?e.right:p.right,p.bottom=typeof e.bottom!="undefined"?e.bottom:p.bottom,p.left=typeof e.left!="undefined"?e.left:p.left,B):p},B.width=function(e){return arguments.length?(v=e,B):v},B.height=function(e){return arguments.length?(m=e,B):m},B.color=function(t){return arguments.length?(w=e.utils.getColor(t),c.color(w),B):w},B.showLegend=function(e){return arguments.length?(E=e,B):E},B.tooltips=function(e){return arguments.length?(T=e,B):T},B.tooltipContent=function(e){return arguments.length?(N=e,B):N},B.noData=function(e){return arguments.length?(_=e,B):_},B.brushExtent=function(e){return arguments.length?(x=e,B):x},B},e.models.multiBar=function(){function C(e){return e.each(function(e){var g=n-t.left-t.right,C=r-t.top-t.bottom,k=d3.select(this);d&&e.length&&(d=[{values:e[0].values.map(function(e){return{x:e.x,y:0,series:e.series,size:.01}})}]),c&&(e=d3.layout.stack().offset(h).values(function(e){return e.values}).y(a)(!e.length&&d?d:e)),e.forEach(function(e,t){e.values.forEach(function(e){e.series=t})}),c&&e[0].values.map(function(t,n){var r=0,i=0;e.map(function(e){var t=e.values[n];t.size=Math.abs(t.y),t.y<0?(t.y1=i,i-=t.size):(t.y1=t.size+r,r+=t.size)})});var L=y&&b?[]:e.map(function(e){return e.values.map(function(e,t){return{x:u(e,t),y:a(e,t),y0:e.y0,y1:e.y1}})});i.domain(y||d3.merge(L).map(function(e){return e.x})).rangeBands(w||[0,g],S),s.domain(b||d3.extent(d3.merge(L).map(function(e){return c?e.y>0?e.y1:e.y1+e.y:e.y}).concat(f))).range(E||[C,0]),i.domain()[0]===i.domain()[1]&&(i.domain()[0]?i.domain([i.domain()[0]-i.domain()[0]*.01,i.domain()[1]+i.domain()[1]*.01]):i.domain([-1,1])),s.domain()[0]===s.domain()[1]&&(s.domain()[0]?s.domain([s.domain()[0]+s.domain()[0]*.01,s.domain()[1]-s.domain()[1]*.01]):s.domain([-1,1])),T=T||i,N=N||s;var A=k.selectAll("g.nv-wrap.nv-multibar").data([e]),O=A.enter().append("g").attr("class","nvd3 nv-wrap nv-multibar"),M=O.append("defs"),_=O.append("g"),D=A.select("g");_.append("g").attr("class","nv-groups"),A.attr("transform","translate("+t.left+","+t.top+")"),M.append("clipPath").attr("id","nv-edge-clip-"+o).append("rect"),A.select("#nv-edge-clip-"+o+" rect").attr("width",g).attr("height",C),D.attr("clip-path",l?"url(#nv-edge-clip-"+o+")":"");var P=A.select(".nv-groups").selectAll(".nv-group").data(function(e){return e},function(e,t){return t});P.enter().append("g").style("stroke-opacity",1e-6).style("fill-opacity",1e-6),P.exit().selectAll("rect.nv-bar").attr("y",function(e){return c?N(e.y0):N(0)}).attr("height",0).remove(),P.attr("class",function(e,t){return"nv-group nv-series-"+t}).classed("hover",function(e){return e.hover}).style("fill",function(e,t){return p(e,t)}).style("stroke",function(e,t){return p(e,t)}),P.style("stroke-opacity",1).style("fill-opacity",.75);var H=P.selectAll("rect.nv-bar").data(function(t){return d&&!e.length?d.values:t.values});H.exit().remove();var B=H.enter().append("rect").attr("class",function(e,t){return a(e,t)<0?"nv-bar negative":"nv-bar positive"}).attr("x",function(t,n,r){return c?0:r*i.rangeBand()/e.length}).attr("y",function(e){return N(c?e.y0:0)}).attr("height",0).attr("width",i.rangeBand()/(c?1:e.length)).attr("transform",function(e,t){return"translate("+i(u(e,t))+",0)"});H.style("fill",function(e,t,n){return p(e,n,t)}).style("stroke",function(e,t,n){return p(e,n,t)}).on("mouseover",function(t,n){d3.select(this).classed("hover",!0),x.elementMouseover({value:a(t,n),point:t,series:e[t.series],pos:[i(u(t,n))+i.rangeBand()*(c?e.length/2:t.series+.5)/e.length,s(a(t,n)+(c?t.y0:0))],pointIndex:n,seriesIndex:t.series,e:d3.event})}).on("mouseout",function(t,n){d3.select(this).classed("hover",!1),x.elementMouseout({value:a(t,n),point:t,series:e[t.series],pointIndex:n,seriesIndex:t.series,e:d3.event})}).on("click",function(t,n){x.elementClick({value:a(t,n),point:t,series:e[t.series],pos:[i(u(t,n))+i.rangeBand()*(c?e.length/2:t.series+.5)/e.length,s(a(t,n)+(c?t.y0:0))],pointIndex:n,seriesIndex:t.series,e:d3.event}),d3.event.stopPropagation()}).on("dblclick",function(t,n){x.elementDblClick({value:a(t,n),point:t,series:e[t.series],pos:[i(u(t,n))+i.rangeBand()*(c?e.length/2:t.series+.5)/e.length,s(a(t,n)+(c?t.y0:0))],pointIndex:n,seriesIndex:t.series,e:d3.event}),d3.event.stopPropagation()}),H.attr("class",function(e,t){return a(e,t)<0?"nv-bar negative":"nv-bar positive"}).attr("transform",function(e,t){return"translate("+i(u(e,t))+",0)"}),v&&(m||(m=e.map(function(){return!0})),H.style("fill",function(e,t,n){return d3.rgb(v(e,t)).darker(m.map(function(e,t){return t}).filter(function(e,t){return!m[t]})[n]).toString()}).style("stroke",function(e,t,n){return d3.rgb(v(e,t)).darker(m.map(function(e,t){return t}).filter(function(e,t){return!m[t]})[n]).toString()})),c?H.attr("y",function(e,t){return s(c?e.y1:0)}).attr("height",function(e,t){return Math.max(Math.abs(s(e.y+(c?e.y0:0))-s(c?e.y0:0)),1)}).attr("x",function(t,n){return c?0:t.series*i.rangeBand()/e.length}).attr("width",i.rangeBand()/(c?1:e.length)):H.attr("x",function(t,n){return t.series*i.rangeBand()/e.length}).attr("width",i.rangeBand()/e.length).attr("y",function(e,t){return a(e,t)<0?s(0):s(0)-s(a(e,t))<1?s(0)-1:s(a(e,t))||0}).attr("height",function(e,t){return Math.max(Math.abs(s(a(e,t))-s(0)),1)||0}),T=i.copy(),N=s.copy()}),C}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=d3.scale.ordinal(),s=d3.scale.linear(),o=Math.floor(Math.random()*1e4),u=function(e){return e.x},a=function(e){return e.y},f=[0],l=!0,c=!1,h="zero",p=e.utils.defaultColor(),d=!1,v=null,m,g=1200,y,b,w,E,S=.1,x=d3.dispatch("chartClick","elementClick","elementDblClick","elementMouseover","elementMouseout"),T,N;return C.dispatch=x,C.options=e.utils.optionsFunc.bind(C),C.x=function(e){return arguments.length?(u=e,C):u},C.y=function(e){return arguments.length?(a=e,C):a},C.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,C):t},C.width=function(e){return arguments.length?(n=e,C):n},C.height=function(e){return arguments.length?(r=e,C):r},C.xScale=function(e){return arguments.length?(i=e,C):i},C.yScale=function(e){return arguments.length?(s=e,C):s},C.xDomain=function(e){return arguments.length?(y=e,C):y},C.yDomain=function(e){return arguments.length?(b=e,C):b},C.xRange=function(e){return arguments.length?(w=e,C):w},C.yRange=function(e){return arguments.length?(E=e,C):E},C.forceY=function(e){return arguments.length?(f=e,C):f},C.stacked=function(e){return arguments.length?(c=e,C):c},C.stackOffset=function(e){return arguments.length?(h=e,C):h},C.clipEdge=function(e){return arguments.length?(l=e,C):l},C.color=function(t){return arguments.length?(p=e.utils.getColor(t),C):p},C.barColor=function(t){return arguments.length?(v=e.utils.getColor(t),C):v},C.disabled=function(e){return arguments.length?(m=e,C):m},C.id=function(e){return arguments.length?(o=e,C):o},C.hideable=function(e){return arguments.length?(d=e,C):d},C.delay=function(e){return arguments.length?(g=e,C):g},C.groupSpacing=function(e){return arguments.length?(S=e,C):S},C},e.models.multiBarChart=function(){function A(e){return e.each(function(e){var b=d3.select(this),k=this,O=(u||parseInt(b.style("width"))||960)-o.left-o.right,M=(a||parseInt(b.style("height"))||400)-o.top-o.bottom;A.update=function(){b.call(A)},A.container=this,S.disabled=e.map(function(e){return!!e.disabled});if(!x){var _;x={};for(_ in S)S[_]instanceof Array?x[_]=S[_].slice(0):x[_]=S[_]}if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var D=b.selectAll(".nv-noData").data([T]);return D.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),D.attr("x",o.left+O/2).attr("y",o.top+M/2).text(function(e){return e}),A}b.selectAll(".nv-noData").remove(),w=t.xScale(),E=t.yScale();var P=b.selectAll("g.nv-wrap.nv-multiBarWithLegend").data([e]),H=P.enter().append("g").attr("class","nvd3 nv-wrap nv-multiBarWithLegend").append("g"),B=P.select("g");H.append("g").attr("class","nv-x nv-axis"),H.append("g").attr("class","nv-y nv-axis"),H.append("g").attr("class","nv-barsWrap"),H.append("g").attr("class","nv-legendWrap"),H.append("g").attr("class","nv-controlsWrap"),c&&(i.width(O-C()),t.barColor()&&e.forEach(function(e,t){e.color=d3.rgb("#ccc").darker(t*1.5).toString()}),B.select(".nv-legendWrap").datum(e).call(i),o.top!=i.height()&&(o.top=i.height(),M=(a||parseInt(b.style("height"))||400)-o.top-o.bottom),B.select(".nv-legendWrap").attr("transform","translate("+C()+","+ -o.top+")"));if(l){var j=[{key:"Grouped",disabled:t.stacked()},{key:"Stacked",disabled:!t.stacked()}];s.width(C()).color(["#444","#444","#444"]),B.select(".nv-controlsWrap").datum(j).attr("transform","translate(0,"+ -o.top+")").call(s)}P.attr("transform","translate("+o.left+","+o.top+")"),d&&B.select(".nv-y.nv-axis").attr("transform","translate("+O+",0)"),t.disabled(e.map(function(e){return e.disabled})).width(O).height(M).color(e.map(function(e,t){return e.color||f(e,t)}).filter(function(t,n){return!e[n].disabled}));var F=B.select(".nv-barsWrap").datum(e.filter(function(e){return!e.disabled}));F.call(t);if(h){n.scale(w).ticks(O/100).tickSize(-M,0),B.select(".nv-x.nv-axis").attr("transform","translate(0,"+E.range()[0]+")"),B.select(".nv-x.nv-axis").call(n);var I=B.select(".nv-x.nv-axis > g").selectAll("g");I.selectAll("line, text").style("opacity",1);if(m){var q=function(e,t){return"translate("+e+","+t+")"},R=5,U=17;I.selectAll("text").attr("transform",function(e,t,n){return q(0,n%2==0?R:U)});var z=d3.selectAll(".nv-x.nv-axis .nv-wrap g g text")[0].length;B.selectAll(".nv-x.nv-axis .nv-axisMaxMin text").attr("transform",function(e,t){return q(0,t===0||z%2!==0?U:R)})}v&&I.filter(function(t,n){return n%Math.ceil(e[0].values.length/(O/100))!==0}).selectAll("text, line").style("opacity",0),g&&I.selectAll(".tick text").attr("transform","rotate("+g+" 0,0)").style("text-anchor",g>0?"start":"end"),B.select(".nv-x.nv-axis").selectAll("g.nv-axisMaxMin text").style("opacity",1)}p&&(r.scale(E).ticks(M/36).tickSize(-O,0),B.select(".nv-y.nv-axis").call(r)),i.dispatch.on("stateChange",function(e){S=e,N.stateChange(S),A.update()}),s.dispatch.on("legendClick",function(e,n){if(!e.disabled)return;j=j.map(function(e){return e.disabled=!0,e}),e.disabled=!1;switch(e.key){case"Grouped":t.stacked(!1);break;case"Stacked":t.stacked(!0)}S.stacked=t.stacked(),N.stateChange(S),A.update()}),N.on("tooltipShow",function(e){y&&L(e,k.parentNode)}),N.on("changeState",function(n){typeof n.disabled!="undefined"&&(e.forEach(function(e,t){e.disabled=n.disabled[t]}),S.disabled=n.disabled),typeof n.stacked!="undefined"&&(t.stacked(n.stacked),S.stacked=n.stacked),A.update()})}),A}var t=e.models.multiBar(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.models.legend(),o={top:30,right:20,bottom:50,left:60},u=null,a=null,f=e.utils.defaultColor(),l=!0,c=!0,h=!0,p=!0,d=!1,v=!0,m=!1,g=0,y=!0,b=function(e,t,n,r,i){return"<h3>"+e+"</h3>"+"<p>"+n+" on "+t+"</p>"},w,E,S={stacked:!1},x=null,T="No Data Available.",N=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),C=function(){return l?180:0},k=0;t.stacked(!1),n.orient("bottom").tickPadding(7).highlightZero(!0).showMaxMin(!1).tickFormat(function(e){return e}),r.orient(d?"right":"left").tickFormat(d3.format(",.1f")),s.updateState(!1);var L=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),a=n.tickFormat()(t.x()(i.point,i.pointIndex)),f=r.tickFormat()(t.y()(i.point,i.pointIndex)),l=b(i.series.key,a,f,i,A);e.tooltip.show([o,u],l,i.value<0?"n":"s",null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+o.left,e.pos[1]+o.top],N.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){N.tooltipHide(e)}),N.on("tooltipHide",function(){y&&e.tooltip.cleanup()}),A.dispatch=N,A.multibar=t,A.legend=i,A.xAxis=n,A.yAxis=r,d3.rebind(A,t,"x","y","xDomain","yDomain","xRange","yRange","forceX","forceY","clipEdge","id","stacked","stackOffset","delay","barColor","groupSpacing"),A.options=e.utils.optionsFunc.bind(A),A.margin=function(e){return arguments.length?(o.top=typeof e.top!="undefined"?e.top:o.top,o.right=typeof e.right!="undefined"?e.right:o.right,o.bottom=typeof e.bottom!="undefined"?e.bottom:o.bottom,o.left=typeof e.left!="undefined"?e.left:o.left,A):o},A.width=function(e){return arguments.length?(u=e,A):u},A.height=function(e){return arguments.length?(a=e,A):a},A.color=function(t){return arguments.length?(f=e.utils.getColor(t),i.color(f),A):f},A.showControls=function(e){return arguments.length?(l=e,A):l},A.showLegend=function(e){return arguments.length?(c=e,A):c},A.showXAxis=function(e){return arguments.length?(h=e,A):h},A.showYAxis=function(e){return arguments.length?(p=e,A):p},A.rightAlignYAxis=function(e){return arguments.length?(d=e,r.orient(e?"right":"left"),A):d},A.reduceXTicks=function(e){return arguments.length?(v=e,A):v},A.rotateLabels=function(e){return arguments.length?(g=e,A):g},A.staggerLabels=function(e){return arguments.length?(m=e,A):m},A.tooltip=function(e){return arguments.length?(b=e,A):b},A.tooltips=function(e){return arguments.length?(y=e,A):y},A.tooltipContent=function(e){return arguments.length?(b=e,A):b},A.state=function(e){return arguments.length?(S=e,A):S},A.defaultState=function(e){return arguments.length?(x=e,A):x},A.noData=function(e){return arguments.length?(T=e,A):T},A.transitionDuration=function(e){return arguments.length?(k=e,A):k},A},e.models.multiBarHorizontal=function(){function C(e){return e.each(function(e){var i=n-t.left-t.right,y=r-t.top-t.bottom,C=d3.select(this);p&&(e=d3.layout.stack().offset("zero").values(function(e){return e.values}).y(a)(e)),e.forEach(function(e,t){e.values.forEach(function(e){e.series=t})}),p&&e[0].values.map(function(t,n){var r=0,i=0;e.map(function(e){var t=e.values[n];t.size=Math.abs(t.y),t.y<0?(t.y1=i-t.size,i-=t.size):(t.y1=r,r+=t.size)})});var k=b&&w?[]:e.map(function(e){return e.values.map(function(e,t){return{x:u(e,t),y:a(e,t),y0:e.y0,y1:e.y1}})});s.domain(b||d3.merge(k).map(function(e){return e.x})).rangeBands(E||[0,y],.1),o.domain(w||d3.extent(d3.merge(k).map(function(e){return p?e.y>0?e.y1+e.y:e.y1:e.y}).concat(f))),d&&!p?o.range(S||[o.domain()[0]<0?m:0,i-(o.domain()[1]>0?m:0)]):o.range(S||[0,i]),T=T||s,N=N||d3.scale.linear().domain(o.domain()).range([o(0),o(0)]);var L=d3.select(this).selectAll("g.nv-wrap.nv-multibarHorizontal").data([e]),A=L.enter().append("g").attr("class","nvd3 nv-wrap nv-multibarHorizontal"),O=A.append("defs"),M=A.append("g"),_=L.select("g");M.append("g").attr("class","nv-groups"),L.attr("transform","translate("+t.left+","+t.top+")");var D=L.select(".nv-groups").selectAll(".nv-group").data(function(e){return e},function(e,t){return t});D.enter().append("g").style("stroke-opacity",1e-6).style("fill-opacity",1e-6),D.exit().style("stroke-opacity",1e-6).style("fill-opacity",1e-6).remove(),D.attr("class",function(e,t){return"nv-group nv-series-"+t}).classed("hover",function(e){return e.hover}).style("fill",function(e,t){return l(e,t)}).style("stroke",function(e,t){return l(e,t)}),D.style("stroke-opacity",1).style("fill-opacity",.75);var P=D.selectAll("g.nv-bar").data(function(e){return e.values});P.exit().remove();var H=P.enter().append("g").attr("transform",function(t,n,r){return"translate("+N(p?t.y0:0)+","+(p?0:r*s.rangeBand()/e.length+s(u(t,n)))+")"});H.append("rect").attr("width",0).attr("height",s.rangeBand()/(p?1:e.length)),P.on("mouseover",function(t,n){d3.select(this).classed("hover",!0),x.elementMouseover({value:a(t,n),point:t,series:e[t.series],pos:[o(a(t,n)+(p?t.y0:0)),s(u(t,n))+s.rangeBand()*(p?e.length/2:t.series+.5)/e.length],pointIndex:n,seriesIndex:t.series,e:d3.event})}).on("mouseout",function(t,n){d3.select(this).classed("hover",!1),x.elementMouseout({value:a(t,n),point:t,series:e[t.series],pointIndex:n,seriesIndex:t.series,e:d3.event})}).on("click",function(t,n){x.elementClick({value:a(t,n),point:t,series:e[t.series],pos:[s(u(t,n))+s.rangeBand()*(p?e.length/2:t.series+.5)/e.length,o(a(t,n)+(p?t.y0:0))],pointIndex:n,seriesIndex:t.series,e:d3.event}),d3.event.stopPropagation()}).on("dblclick",function(t,n){x.elementDblClick({value:a(t,n),point:t,series:e[t.series],pos:[s(u(t,n))+s.rangeBand()*(p?e.length/2:t.series+.5)/e.length,o(a(t,n)+(p?t.y0:0))],pointIndex:n,seriesIndex:t.series,e:d3.event}),d3.event.stopPropagation()}),H.append("text"),d&&!p?(P.select("text").attr("text-anchor",function(e,t){return a(e,t)<0?"end":"start"}).attr("y",s.rangeBand()/(e.length*2)).attr("dy",".32em").text(function(e,t){return g(a(e,t))}),P.select("text").attr("x",function(e,t){return a(e,t)<0?-4:o(a(e,t))-o(0)+4})):P.selectAll("text").text(""),v&&!p?(H.append("text").classed("nv-bar-label",!0),P.select("text.nv-bar-label").attr("text-anchor",function(e,t){return a(e,t)<0?"start":"end"}).attr("y",s.rangeBand()/(e.length*2)).attr("dy",".32em").text(function(e,t){return u(e,t)}),P.select("text.nv-bar-label").attr("x",function(e,t){return a(e,t)<0?o(0)-o(a(e,t))+4:-4})):P.selectAll("text.nv-bar-label").text(""),P.attr("class",function(e,t){return a(e,t)<0?"nv-bar negative":"nv-bar positive"}),c&&(h||(h=e.map(function(){return!0})),P.style("fill",function(e,t,n){return d3.rgb(c(e,t)).darker(h.map(function(e,t){return t}).filter(function(e,t){return!h[t]})[n]).toString()}).style("stroke",function(e,t,n){return d3.rgb(c(e,t)).darker(h.map(function(e,t){return t}).filter(function(e,t){return!h[t]})[n]).toString()})),p?P.attr("transform",function(e,t){return"translate("+o(e.y1)+","+s(u(e,t))+")"}).select("rect").attr("width",function(e,t){return Math.abs(o(a(e,t)+e.y0)-o(e.y0))}).attr("height",s.rangeBand()):P.attr("transform",function(t,n){return"translate("+(a(t,n)<0?o(a(t,n)):o(0))+","+(t.series*s.rangeBand()/e.length+s(u(t,n)))+")"}).select("rect").attr("height",s.rangeBand()/e.length).attr("width",function(e,t){return Math.max(Math.abs(o(a(e,t))-o(0)),1)}),T=s.copy(),N=o.copy()}),C}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=Math.floor(Math.random()*1e4),s=d3.scale.ordinal(),o=d3.scale.linear(),u=function(e){return e.x},a=function(e){return e.y},f=[0],l=e.utils.defaultColor(),c=null,h,p=!1,d=!1,v=!1,m=60,g=d3.format(",.2f"),y=1200,b,w,E,S,x=d3.dispatch("chartClick","elementClick","elementDblClick","elementMouseover","elementMouseout"),T,N;return C.dispatch=x,C.options=e.utils.optionsFunc.bind(C),C.x=function(e){return arguments.length?(u=e,C):u},C.y=function(e){return arguments.length?(a=e,C):a},C.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,C):t},C.width=function(e){return arguments.length?(n=e,C):n},C.height=function(e){return arguments.length?(r=e,C):r},C.xScale=function(e){return arguments.length?(s=e,C):s},C.yScale=function(e){return arguments.length?(o=e,C):o},C.xDomain=function(e){return arguments.length?(b=e,C):b},C.yDomain=function(e){return arguments.length?(w=e,C):w},C.xRange=function(e){return arguments.length?(E=e,C):E},C.yRange=function(e){return arguments.length?(S=e,C):S},C.forceY=function(e){return arguments.length?(f=e,C):f},C.stacked=function(e){return arguments.length?(p=e,C):p},C.color=function(t){return arguments.length?(l=e.utils.getColor(t),C):l},C.barColor=function(t){return arguments.length?(c=e.utils.getColor(t),C):c},C.disabled=function(e){return arguments.length?(h=e,C):h},C.id=function(e){return arguments.length?(i=e,C):i},C.delay=function(e){return arguments.length?(y=e,C):y},C.showValues=function(e){return arguments.length?(d=e,C):d},C.showBarLabels=function(e){return arguments.length?(v=e,C):v},C.valueFormat=function(e){return arguments.length?(g=e,C):g},C.valuePadding=function(e){return arguments.length?(m=e,C):m},C},e.models.multiBarHorizontalChart=function(){function C(e){return e.each(function(e){var d=d3.select(this),m=this,T=(u||parseInt(d.style("width"))||960)-o.left-o.right,k=(a||parseInt(d.style("height"))||400)-o.top-o.bottom;C.update=function(){d.call(C)},C.container=this,b.disabled=e.map(function(e){return!!e.disabled});if(!w){var L;w={};for(L in b)b[L]instanceof Array?w[L]=b[L].slice(0):w[L]=b[L]}if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var A=d.selectAll(".nv-noData").data([E]);return A.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),A.attr("x",o.left+T/2).attr("y",o.top+k/2).text(function(e){return e}),C}d.selectAll(".nv-noData").remove(),g=t.xScale(),y=t.yScale();var O=d.selectAll("g.nv-wrap.nv-multiBarHorizontalChart").data([e]),M=O.enter().append("g").attr("class","nvd3 nv-wrap nv-multiBarHorizontalChart").append("g"),_=O.select("g");M.append("g").attr("class","nv-x nv-axis"),M.append("g").attr("class","nv-y nv-axis").append("g").attr("class","nv-zeroLine").append("line"),M.append("g").attr("class","nv-barsWrap"),M.append("g").attr("class","nv-legendWrap"),M.append("g").attr("class","nv-controlsWrap"),c&&(i.width(T-x()),t.barColor()&&e.forEach(function(e,t){e.color=d3.rgb("#ccc").darker(t*1.5).toString()}),_.select(".nv-legendWrap").datum(e).call(i),o.top!=i.height()&&(o.top=i.height(),k=(a||parseInt(d.style("height"))||400)-o.top-o.bottom),_.select(".nv-legendWrap").attr("transform","translate("+x()+","+ -o.top+")"));if(l){var D=[{key:"Grouped",disabled:t.stacked()},{key:"Stacked",disabled:!t.stacked()}];s.width(x()).color(["#444","#444","#444"]),_.select(".nv-controlsWrap").datum(D).attr("transform","translate(0,"+ -o.top+")").call(s)}O.attr("transform","translate("+o.left+","+o.top+")"),t.disabled(e.map(function(e){return e.disabled})).width(T).height(k).color(e.map(function(e,t){return e.color||f(e,t)}).filter(function(t,n){return!e[n].disabled}));var P=_.select(".nv-barsWrap").datum(e.filter(function(e){return!e.disabled}));P.call(t);if(h){n.scale(g).ticks(k/24).tickSize(-T,0),_.select(".nv-x.nv-axis").call(n);var H=_.select(".nv-x.nv-axis").selectAll("g");H.selectAll("line, text")}p&&(r.scale(y).ticks(T/100).tickSize(-k,0),_.select(".nv-y.nv-axis").attr("transform","translate(0,"+k+")"),_.select(".nv-y.nv-axis").call(r)),_.select(".nv-zeroLine line").attr("x1",y(0)).attr("x2",y(0)).attr("y1",0).attr("y2",-k),i.dispatch.on("stateChange",function(e){b=e,S.stateChange(b),C.update()}),s.dispatch.on("legendClick",function(e,n){if(!e.disabled)return;D=D.map(function(e){return e.disabled=!0,e}),e.disabled=!1;switch(e.key){case"Grouped":t.stacked(!1);break;case"Stacked":t.stacked(!0)}b.stacked=t.stacked(),S.stateChange(b),C.update()}),S.on("tooltipShow",function(e){v&&N(e,m.parentNode)}),S.on("changeState",function(n){typeof n.disabled!="undefined"&&(e.forEach(function(e,t){e.disabled=n.disabled[t]}),b.disabled=n.disabled),typeof n.stacked!="undefined"&&(t.stacked(n.stacked),b.stacked=n.stacked),C.update()})}),C}var t=e.models.multiBarHorizontal(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend().height(30),s=e.models.legend().height(30),o={top:30,right:20,bottom:50,left:60},u=null,a=null,f=e.utils.defaultColor(),l=!0,c=!0,h=!0,p=!0,d=!1,v=!0,m=function(e,t,n,r,i){return"<h3>"+e+" - "+t+"</h3>"+"<p>"+n+"</p>"},g,y,b={stacked:d},w=null,E="No Data Available.",S=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),x=function(){return l?180:0},T=0;t.stacked(d),n.orient("left").tickPadding(5).highlightZero(!1).showMaxMin(!1).tickFormat(function(e){return e}),r.orient("bottom").tickFormat(d3.format(",.1f")),s.updateState(!1);var N=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),a=n.tickFormat()(t.x()(i.point,i.pointIndex)),f=r.tickFormat()(t.y()(i.point,i.pointIndex)),l=m(i.series.key,a,f,i,C);e.tooltip.show([o,u],l,i.value<0?"e":"w",null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+o.left,e.pos[1]+o.top],S.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){S.tooltipHide(e)}),S.on("tooltipHide",function(){v&&e.tooltip.cleanup()}),C.dispatch=S,C.multibar=t,C.legend=i,C.xAxis=n,C.yAxis=r,d3.rebind(C,t,"x","y","xDomain","yDomain","xRange","yRange","forceX","forceY","clipEdge","id","delay","showValues","showBarLabels","valueFormat","stacked","barColor"),C.options=e.utils.optionsFunc.bind(C),C.margin=function(e){return arguments.length?(o.top=typeof e.top!="undefined"?e.top:o.top,o.right=typeof e.right!="undefined"?e.right:o.right,o.bottom=typeof e.bottom!="undefined"?e.bottom:o.bottom,o.left=typeof e.left!="undefined"?e.left:o.left,C):o},C.width=function(e){return arguments.length?(u=e,C):u},C.height=function(e){return arguments.length?(a=e,C):a},C.color=function(t){return arguments.length?(f=e.utils.getColor(t),i.color(f),C):f},C.showControls=function(e){return arguments.length?(l=e,C):l},C.showLegend=function(e){return arguments.length?(c=e,C):c},C.showXAxis=function(e){return arguments.length?(h=e,C):h},C.showYAxis=function(e){return arguments.length?(p=e,C):p},C.tooltip=function(e){return arguments.length?(m=e,C):m},C.tooltips=function(e){return arguments.length?(v=e,C):v},C.tooltipContent=function(e){return arguments.length?(m=e,C):m},C.state=function(e){return arguments.length?(b=e,C):b},C.defaultState=function(e){return arguments.length?(w=e,C):w},C.noData=function(e){return arguments.length?(E=e,C):E},C.transitionDuration=function(e){return arguments.length?(T=e,C):T},C},e.models.multiChart=function(){function C(e){return e.each(function(e){var u=d3.select(this),f=this;C.update=function(){u.call(C)},C.container=this;var k=(r||parseInt(u.style("width"))||960)-t.left-t.right,L=(i||parseInt(u.style("height"))||400)-t.top-t.bottom,A=e.filter(function(e){return!e.disabled&&e.type=="line"&&e.yAxis==1}),O=e.filter(function(e){return!e.disabled&&e.type=="line"&&e.yAxis==2}),M=e.filter(function(e){return!e.disabled&&e.type=="bar"&&e.yAxis==1}),_=e.filter(function(e){return!e.disabled&&e.type=="bar"&&e.yAxis==2}),D=e.filter(function(e){return!e.disabled&&e.type=="area"&&e.yAxis==1}),P=e.filter(function(e){return!e.disabled&&e.type=="area"&&e.yAxis==2}),H=e.filter(function(e){return!e.disabled&&e.yAxis==1}).map(function(e){return e.values.map(function(e,t){return{x:e.x,y:e.y}})}),B=e.filter(function(e){return!e.disabled&&e.yAxis==2}).map(function(e){return e.values.map(function(e,t){return{x:e.x,y:e.y}})});a.domain(d3.extent(d3.merge(H.concat(B)),function(e){return e.x})).range([0,k]);var j=u.selectAll("g.wrap.multiChart").data([e]),F=j.enter().append("g").attr("class","wrap nvd3 multiChart").append("g");F.append("g").attr("class","x axis"),F.append("g").attr("class","y1 axis"),F.append("g").attr("class","y2 axis"),F.append("g").attr("class","lines1Wrap"),F.append("g").attr("class","lines2Wrap"),F.append("g").attr("class","bars1Wrap"),F.append("g").attr("class","bars2Wrap"),F.append("g").attr("class","stack1Wrap"),F.append("g").attr("class","stack2Wrap"),F.append("g").attr("class","legendWrap");var I=j.select("g");s&&(x.width(k/2),I.select(".legendWrap").datum(e.map(function(e){return e.originalKey=e.originalKey===undefined?e.key:e.originalKey,e.key=e.originalKey+(e.yAxis==1?"":" (right axis)"),e})).call(x),t.top!=x.height()&&(t.top=x.height(),L=(i||parseInt(u.style("height"))||400)-t.top-t.bottom),I.select(".legendWrap").attr("transform","translate("+k/2+","+ -t.top+")")),d.width(k).height(L).interpolate("monotone").color(e.map(function(e,t){return e.color||n[t%n.length]}).filter(function(t,n){return!e[n].disabled&&e[n].yAxis==1&&e[n].type=="line"})),v.width(k).height(L).interpolate("monotone").color(e.map(function(e,t){return e.color||n[t%n.length]}).filter(function(t,n){return!e[n].disabled&&e[n].yAxis==2&&e[n].type=="line"})),m.width(k).height(L).color(e.map(function(e,t){return e.color||n[t%n.length]}).filter(function(t,n){return!e[n].disabled&&e[n].yAxis==1&&e[n].type=="bar"})),g.width(k).height(L).color(e.map(function(e,t){return e.color||n[t%n.length]}).filter(function(t,n){return!e[n].disabled&&e[n].yAxis==2&&e[n].type=="bar"})),y.width(k).height(L).color(e.map(function(e,t){return e.color||n[t%n.length]}).filter(function(t,n){return!e[n].disabled&&e[n].yAxis==1&&e[n].type=="area"})),b.width(k).height(L).color(e.map(function(e,t){return e.color||n[t%n.length]}).filter(function(t,n){return!e[n].disabled&&e[n].yAxis==2&&e[n].type=="area"})),I.attr("transform","translate("+t.left+","+t.top+")");var q=I.select(".lines1Wrap").datum(A),R=I.select(".bars1Wrap").datum(M),U=I.select(".stack1Wrap").datum(D),z=I.select(".lines2Wrap").datum(O),W=I.select(".bars2Wrap").datum(_),X=I.select(".stack2Wrap").datum(P),V=D.length?D.map(function(e){return e.values}).reduce(function(e,t){return e.map(function(e,n){return{x:e.x,y:e.y+t[n].y}})}).concat([{x:0,y:0}]):[],$=P.length?P.map(function(e){return e.values}).reduce(function(e,t){return e.map(function(e,n){return{x:e.x,y:e.y+t[n].y}})}).concat([{x:0,y:0}]):[];h.domain(l||d3.extent(d3.merge(H).concat(V),function(e){return e.y})).range([0,L]),p.domain(c||d3.extent(d3.merge(B).concat($),function(e){return e.y})).range([0,L]),d.yDomain(h.domain()),m.yDomain(h.domain()),y.yDomain(h.domain()),v.yDomain(p.domain()),g.yDomain(p.domain()),b.yDomain(p.domain()),D.length&&d3.transition(U).call(y),P.length&&d3.transition(X).call(b),M.length&&d3.transition(R).call(m),_.length&&d3.transition(W).call(g),A.length&&d3.transition(q).call(d),O.length&&d3.transition(z).call(v),w.ticks(k/100).tickSize(-L,0),I.select(".x.axis").attr("transform","translate(0,"+L+")"),d3.transition(I.select(".x.axis")).call(w),E.ticks(L/36).tickSize(-k,0),d3.transition(I.select(".y1.axis")).call(E),S.ticks(L/36).tickSize(-k,0),d3.transition(I.select(".y2.axis")).call(S),I.select(".y2.axis").style("opacity",B.length?1:0).attr("transform","translate("+a.range()[1]+",0)"),x.dispatch.on("stateChange",function(e){C.update()}),T.on("tooltipShow",function(e){o&&N(e,f.parentNode)})}),C}var t={top:30,right:20,bottom:50,left:60},n=d3.scale.category20().range(),r=null,i=null,s=!0,o=!0,u=function(e,t,n,r,i){return"<h3>"+e+"</h3>"+"<p>"+n+" at "+t+"</p>"},a,f,l,c,a=d3.scale.linear(),h=d3.scale.linear(),p=d3.scale.linear(),d=e.models.line().yScale(h),v=e.models.line().yScale(p),m=e.models.multiBar().stacked(!1).yScale(h),g=e.models.multiBar().stacked(!1).yScale(p),y=e.models.stackedArea().yScale(h),b=e.models.stackedArea().yScale(p),w=e.models.axis().scale(a).orient("bottom").tickPadding(5),E=e.models.axis().scale(h).orient("left"),S=e.models.axis().scale(p).orient("right"),x=e.models.legend().height(30),T=d3.dispatch("tooltipShow","tooltipHide"),N=function(t,n){var r=t.pos[0]+(n.offsetLeft||0),i=t.pos[1]+(n.offsetTop||0),s=w.tickFormat()(d.x()(t.point,t.pointIndex)),o=(t.series.yAxis==2?S:E).tickFormat()(d.y()(t.point,t.pointIndex)),a=u(t.series.key,s,o,t,C);e.tooltip.show([r,i],a,undefined,undefined,n.offsetParent)};return d.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),d.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),v.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),v.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),m.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),m.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),g.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),g.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),y.dispatch.on("tooltipShow",function(e){if(!Math.round(y.y()(e.point)*100))return setTimeout(function(){d3.selectAll(".point.hover").classed("hover",!1)},0),!1;e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),y.dispatch.on("tooltipHide",function(e){T.tooltipHide(e)}),b.dispatch.on("tooltipShow",function(e){if(!Math.round(b.y()(e.point)*100))return setTimeout(function(){d3.selectAll(".point.hover").classed("hover",!1)},0),!1;e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),b.dispatch.on("tooltipHide",function(e){T.tooltipHide(e)}),d.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),d.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),v.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],T.tooltipShow(e)}),v.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),T.on("tooltipHide",function(){o&&e.tooltip.cleanup()}),C.dispatch=T,C.lines1=d,C.lines2=v,C.bars1=m,C.bars2=g,C.stack1=y,C.stack2=b,C.xAxis=w,C.yAxis1=E,C.yAxis2=S,C.options=e.utils.optionsFunc.bind(C),C.x=function(e){return arguments.length?(getX=e,d.x(e),m.x(e),C):getX},C.y=function(e){return arguments.length?(getY=e,d.y(e),m.y(e),C):getY},C.yDomain1=function(e){return arguments.length?(l=e,C):l},C.yDomain2=function(e){return arguments.length?(c=e,C):c},C.margin=function(e){return arguments.length?(t=e,C):t},C.width=function(e){return arguments.length?(r=e,C):r},C.height=function(e){return arguments.length?(i=e,C):i},C.color=function(e){return arguments.length?(n=e,x.color(e),C):n},C.showLegend=function(e){return arguments.length?(s=e,C):s},C.tooltips=function(e){return arguments.length?(o=e,C):o},C.tooltipContent=function(e){return arguments.length?(u=e,C):u},C},e.models.ohlcBar=function(){function x(e){return e.each(function(e){var g=n-t.left-t.right,x=r-t.top-t.bottom,T=d3.select(this);s.domain(y||d3.extent(e[0].values.map(u).concat(p))),v?s.range(w||[g*.5/e[0].values.length,g*(e[0].values.length-.5)/e[0].values.length]):s.range(w||[0,g]),o.domain(b||[d3.min(e[0].values.map(h).concat(d)),d3.max(e[0].values.map(c).concat(d))]).range(E||[x,0]),s.domain()[0]===s.domain()[1]&&(s.domain()[0]?s.domain([s.domain()[0]-s.domain()[0]*.01,s.domain()[1]+s.domain()[1]*.01]):s.domain([-1,1])),o.domain()[0]===o.domain()[1]&&(o.domain()[0]?o.domain([o.domain()[0]+o.domain()[0]*.01,o.domain()[1]-o.domain()[1]*.01]):o.domain([-1,1]));var N=d3.select(this).selectAll("g.nv-wrap.nv-ohlcBar").data([e[0].values]),C=N.enter().append("g").attr("class","nvd3 nv-wrap nv-ohlcBar"),k=C.append("defs"),L=C.append("g"),A=N.select("g");L.append("g").attr("class","nv-ticks"),N.attr("transform","translate("+t.left+","+t.top+")"),T.on("click",function(e,t){S.chartClick({data:e,index:t,pos:d3.event,id:i})}),k.append("clipPath").attr("id","nv-chart-clip-path-"+i).append("rect"),N.select("#nv-chart-clip-path-"+i+" rect").attr("width",g).attr("height",x),A.attr("clip-path",m?"url(#nv-chart-clip-path-"+i+")":"");var O=N.select(".nv-ticks").selectAll(".nv-tick").data(function(e){return e});O.exit().remove();var M=O.enter().append("path").attr("class",function(e,t,n){return(f(e,t)>l(e,t)?"nv-tick negative":"nv-tick positive")+" nv-tick-"+n+"-"+t}).attr("d",function(t,n){var r=g/e[0].values.length*.9;return"m0,0l0,"+(o(f(t,n))-o(c(t,n)))+"l"+ -r/2+",0l"+r/2+",0l0,"+(o(h(t,n))-o(f(t,n)))+"l0,"+(o(l(t,n))-o(h(t,n)))+"l"+r/2+",0l"+ -r/2+",0z"}).attr("transform",function(e,t){return"translate("+s(u(e,t))+","+o(c(e,t))+")"}).on("mouseover",function(t,n){d3.select(this).classed("hover",!0),S.elementMouseover({point:t,series:e[0],pos:[s(u(t,n)),o(a(t,n))],pointIndex:n,seriesIndex:0,e:d3.event})}).on("mouseout",function(t,n){d3.select(this).classed("hover",!1),S.elementMouseout({point:t,series:e[0],pointIndex:n,seriesIndex:0,e:d3.event})}).on("click",function(e,t){S.elementClick({value:a(e,t),data:e,index:t,pos:[s(u(e,t)),o(a(e,t))],e:d3.event,id:i}),d3.event.stopPropagation()}).on("dblclick",function(e,t){S.elementDblClick({value:a(e,t),data:e,index:t,pos:[s(u(e,t)),o(a(e,t))],e:d3.event,id:i}),d3.event.stopPropagation()});O.attr("class",function(e,t,n){return(f(e,t)>l(e,t)?"nv-tick negative":"nv-tick positive")+" nv-tick-"+n+"-"+t}),d3.transition(O).attr("transform",function(e,t){return"translate("+s(u(e,t))+","+o(c(e,t))+")"}).attr("d",function(t,n){var r=g/e[0].values.length*.9;return"m0,0l0,"+(o(f(t,n))-o(c(t,n)))+"l"+ -r/2+",0l"+r/2+",0l0,"+(o(h(t,n))-o(f(t,n)))+"l0,"+(o(l(t,n))-o(h(t,n)))+"l"+r/2+",0l"+ -r/2+",0z"})}),x}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=Math.floor(Math.random()*1e4),s=d3.scale.linear(),o=d3.scale.linear(),u=function(e){return e.x},a=function(e){return e.y},f=function(e){return e.open},l=function(e){return e.close},c=function(e){return e.high},h=function(e){return e.low},p=[],d=[],v=!1,m=!0,g=e.utils.defaultColor(),y,b,w,E,S=d3.dispatch("chartClick","elementClick","elementDblClick","elementMouseover","elementMouseout");return x.dispatch=S,x.options=e.utils.optionsFunc.bind(x),x.x=function(e){return arguments.length?(u=e,x):u},x.y=function(e){return arguments.length?(a=e,x):a},x.open=function(e){return arguments.length?(f=e,x):f},x.close=function(e){return arguments.length?(l=e,x):l},x.high=function(e){return arguments.length?(c=e,x):c},x.low=function(e){return arguments.length?(h=e,x):h},x.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,x):t},x.width=function(e){return arguments.length?(n=e,x):n},x.height=function(e){return arguments.length?(r=e,x):r},x.xScale=function(e){return arguments.length?(s=e,x):s},x.yScale=function(e){return arguments.length?(o=e,x):o},x.xDomain=function(e){return arguments.length?(y=e,x):y},x.yDomain=function(e){return arguments.length?(b=e,x):b},x.xRange=function(e){return arguments.length?(w=e,x):w},x.yRange=function(e){return arguments.length?(E=e,x):E},x.forceX=function(e){return arguments.length?(p=e,x):p},x.forceY=function(e){return arguments.length?(d=e,x):d},x.padData=function(e){return arguments.length?(v=e,x):v},x.clipEdge=function(e){return arguments.length?(m=e,x):m},x.color=function(t){return arguments.length?(g=e.utils.getColor(t),x):g},x.id=function(e){return arguments.length?(i=e,x):i},x},e.models.pie=function(){function S(e){return e.each(function(e){function q(e){var t=(e.startAngle+e.endAngle)*90/Math.PI-90;return t>90?t-180:t}function R(e){e.endAngle=isNaN(e.endAngle)?0:e.endAngle,e.startAngle=isNaN(e.startAngle)?0:e.startAngle,m||(e.innerRadius=0);var t=d3.interpolate(this._current,e);return this._current=t(0),function(e){return A(t(e))}}function U(e){e.innerRadius=0;var t=d3.interpolate({startAngle:0,endAngle:0},e);return function(e){return A(t(e))}}var o=n-t.left-t.right,f=r-t.top-t.bottom,S=Math.min(o,f)/2,x=S-S/5,T=d3.select(this),N=T.selectAll(".nv-wrap.nv-pie").data(e),C=N.enter().append("g").attr("class","nvd3 nv-wrap nv-pie nv-chart-"+u),k=C.append("g"),L=N.select("g");k.append("g").attr("class","nv-pie"),k.append("g").attr("class","nv-pieLabels"),N.attr("transform","translate("+t.left+","+t.top+")"),L.select(".nv-pie").attr("transform","translate("+o/2+","+f/2+")"),L.select(".nv-pieLabels").attr("transform","translate("+o/2+","+f/2+")"),T.on("click",function(e,t){E.chartClick({data:e,index:t,pos:d3.event,id:u})});var A=d3.svg.arc().outerRadius(x);y&&A.startAngle(y),b&&A.endAngle(b),m&&A.innerRadius(S*w);var O=d3.layout.pie().sort(null).value(function(e){return e.disabled?0:s(e)}),M=N.select(".nv-pie").selectAll(".nv-slice").data(O),_=N.select(".nv-pieLabels").selectAll(".nv-label").data(O);M.exit().remove(),_.exit().remove();var D=M.enter().append("g").attr("class","nv-slice").on("mouseover",function(e,t){d3.select(this).classed("hover",!0),E.elementMouseover({label:i(e.data),value:s(e.data),point:e.data,pointIndex:t,pos:[d3.event.pageX,d3.event.pageY],id:u})}).on("mouseout",function(e,t){d3.select(this).classed("hover",!1),E.elementMouseout({label:i(e.data),value:s(e.data),point:e.data,index:t,id:u})}).on("click",function(e,t){E.elementClick({label:i(e.data),value:s(e.data),point:e.data,index:t,pos:d3.event,id:u}),d3.event.stopPropagation()}).on("dblclick",function(e,t){E.elementDblClick({label:i(e.data),value:s(e.data),point:e.data,index:t,pos:d3.event,id:u}),d3.event.stopPropagation()});M.attr("fill",function(e,t){return a(e,t)}).attr("stroke",function(e,t){return a(e,t)});var P=D.append("path").each(function(e){this._current=e});M.select("path").attr("d",A);if(l){var H=d3.svg.arc().innerRadius(0);c&&(H=A),h&&(H=d3.svg.arc().outerRadius(A.outerRadius())),_.enter().append("g").classed("nv-label",!0).each(function(e,t){var n=d3.select(this);n.attr("transform",function(e){if(g){e.outerRadius=x+10,e.innerRadius=x+15;var t=(e.startAngle+e.endAngle)/2*(180/Math.PI);return(e.startAngle+e.endAngle)/2<Math.PI?t-=90:t+=90,"translate("+H.centroid(e)+") rotate("+t+")"}return e.outerRadius=S+10,e.innerRadius=S+15,"translate("+H.centroid(e)+")"}),n.append("rect").style("stroke","#fff").style("fill","#fff").attr("rx",3).attr("ry",3),n.append("text").style("text-anchor",g?(e.startAngle+e.endAngle)/2<Math.PI?"start":"end":"middle").style("fill","#000")});var B={},j=14,F=140,I=function(e){return Math.floor(e[0]/F)*F+","+Math.floor(e[1]/j)*j};_.attr("transform",function(e){if(g){e.outerRadius=x+10,e.innerRadius=x+15;var t=(e.startAngle+e.endAngle)/2*(180/Math.PI);return(e.startAngle+e.endAngle)/2<Math.PI?t-=90:t+=90,"translate("+H.centroid(e)+") rotate("+t+")"}e.outerRadius=S+10,e.innerRadius=S+15;var n=H.centroid(e),r=I(n);return B[r]&&(n[1]-=j),B[I(n)]=!0,"translate("+n+")"}),_.select(".nv-label text").style("text-anchor",g?(d.startAngle+d.endAngle)/2<Math.PI?"start":"end":"middle").text(function(e,t){var n=(e.endAngle-e.startAngle)/(2*Math.PI),r={key:i(e.data),value:s(e.data),percent:d3.format("%")(n)};return e.value&&n>v?r[p]:""})}}),S}var t={top:0,right:0,bottom:0,left:0},n=500,r=500,i=function(e){return e.x},s=function(e){return e.y},o=function(e){return e.description},u=Math.floor(Math.random()*1e4),a=e.utils.defaultColor(),f=d3.format(",.2f"),l=!0,c=!0,h=!1,p="key",v=.02,m=!1,g=!1,y=!1,b=!1,w=.5,E=d3.dispatch("chartClick","elementClick","elementDblClick","elementMouseover","elementMouseout");return S.dispatch=E,S.options=e.utils.optionsFunc.bind(S),S.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,S):t},S.width=function(e){return arguments.length?(n=e,S):n},S.height=function(e){return arguments.length?(r=e,S):r},S.values=function(t){return e.log("pie.values() is no longer supported."),S},S.x=function(e){return arguments.length?(i=e,S):i},S.y=function(e){return arguments.length?(s=d3.functor(e),S):s},S.description=function(e){return arguments.length?(o=e,S):o},S.showLabels=function(e){return arguments.length?(l=e,S):l},S.labelSunbeamLayout=function(e){return arguments.length?(g=e,S):g},S.donutLabelsOutside=function(e){return arguments.length?(h=e,S):h},S.pieLabelsOutside=function(e){return arguments.length?(c=e,S):c},S.labelType=function(e){return arguments.length?(p=e,p=p||"key",S):p},S.donut=function(e){return arguments.length?(m=e,S):m},S.donutRatio=function(e){return arguments.length?(w=e,S):w},S.startAngle=function(e){return arguments.length?(y=e,S):y},S.endAngle=function(e){return arguments.length?(b=e,S):b},S.id=function(e){return arguments.length?(u=e,S):u},S.color=function(t){return arguments.length?(a=e.utils.getColor(t),S):a},S.valueFormat=function(e){return arguments.length?(f=e,S):f},S.labelThreshold=function(e){return arguments.length?(v=e,S):v},S},e.models.pieChart=function(){function v(e){return e.each(function(e){var u=d3.select(this),a=this,f=(i||parseInt(u.style("width"))||960)-r.left-r.right,d=(s||parseInt(u.style("height"))||400)-r.top-r.bottom;v.update=function(){u.call(v)},v.container=this,l.disabled=e.map(function(e){return!!e.disabled});if(!c){var m;c={};for(m in l)l[m]instanceof Array?c[m]=l[m].slice(0):c[m]=l[m]}if(!e||!e.length){var g=u.selectAll(".nv-noData").data([h]);return g.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),g.attr("x",r.left+f/2).attr("y",r.top+d/2).text(function(e){return e}),v}u.selectAll(".nv-noData").remove();var y=u.selectAll("g.nv-wrap.nv-pieChart").data([e]),b=y.enter().append("g").attr("class","nvd3 nv-wrap nv-pieChart").append("g"),w=y.select("g");b.append("g").attr("class","nv-pieWrap"),b.append("g").attr("class","nv-legendWrap"),o&&(n.width(f).key(t.x()),y.select(".nv-legendWrap").datum(e).call(n),r.top!=n.height()&&(r.top=n.height(),d=(s||parseInt(u.style("height"))||400)-r.top-r.bottom),y.select(".nv-legendWrap").attr("transform","translate(0,"+ -r.top+")")),y.attr("transform","translate("+r.left+","+r.top+")"),t.width(f).height(d);var E=w.select(".nv-pieWrap").datum([e]);d3.transition(E).call(t),n.dispatch.on("stateChange",function(e){l=e,p.stateChange(l),v.update()}),t.dispatch.on("elementMouseout.tooltip",function(e){p.tooltipHide(e)}),p.on("changeState",function(t){typeof t.disabled!="undefined"&&(e.forEach(function(e,n){e.disabled=t.disabled[n]}),l.disabled=t.disabled),v.update()})}),v}var t=e.models.pie(),n=e.models.legend(),r={top:30,right:20,bottom:20,left:20},i=null,s=null,o=!0,u=e.utils.defaultColor(),a=!0,f=function(e,t,n,r){return"<h3>"+e+"</h3>"+"<p>"+t+"</p>"},l={},c=null,h="No Data Available.",p=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),d=function(n,r){var i=t.description()(n.point)||t.x()(n.point),s=n.pos[0]+(r&&r.offsetLeft||0),o=n.pos[1]+(r&&r.offsetTop||0),u=t.valueFormat()(t.y()(n.point)),a=f(i,u,n,v);e.tooltip.show([s,o],a,n.value<0?"n":"s",null,r)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+r.left,e.pos[1]+r.top],p.tooltipShow(e)}),p.on("tooltipShow",function(e){a&&d(e)}),p.on("tooltipHide",function(){a&&e.tooltip.cleanup()}),v.legend=n,v.dispatch=p,v.pie=t,d3.rebind(v,t,"valueFormat","values","x","y","description","id","showLabels","donutLabelsOutside","pieLabelsOutside","labelType","donut","donutRatio","labelThreshold"),v.options=e.utils.optionsFunc.bind(v),v.margin=function(e){return arguments.length?(r.top=typeof e.top!="undefined"?e.top:r.top,r.right=typeof e.right!="undefined"?e.right:r.right,r.bottom=typeof e.bottom!="undefined"?e.bottom:r.bottom,r.left=typeof e.left!="undefined"?e.left:r.left,v):r},v.width=function(e){return arguments.length?(i=e,v):i},v.height=function(e){return arguments.length?(s=e,v):s},v.color=function(r){return arguments.length?(u=e.utils.getColor(r),n.color(u),t.color(u),v):u},v.showLegend=function(e){return arguments.length?(o=e,v):o},v.tooltips=function(e){return arguments.length?(a=e,v):a},v.tooltipContent=function(e){return arguments.length?(f=e,v):f},v.state=function(e){return arguments.length?(l=e,v):l},v.defaultState=function(e){return arguments.length?(c=e,v):c},v.noData=function(e){return arguments.length?(h=e,v):h},v},e.models.scatter=function(){function I(q){return q.each(function(I){function Q(){if(!g)return!1;var e,i=d3.merge(I.map(function(e,t){return e.values.map(function(e,n){var r=f(e,n),i=l(e,n);return[o(r),u(i),t,n,e]}).filter(function(e,t){return b(e[4],t)})}));if(D===!0){if(x){var a=X.select("defs").selectAll(".nv-point-clips").data([s]).enter();a.append("clipPath").attr("class","nv-point-clips").attr("id","nv-points-clip-"+s);var c=X.select("#nv-points-clip-"+s).selectAll("circle").data(i);c.enter().append("circle").attr("r",T),c.exit().remove(),c.attr("cx",function(e){return e[0]}).attr("cy",function(e){return e[1]}),X.select(".nv-point-paths").attr("clip-path","url(#nv-points-clip-"+s+")")}i.length&&(i.push([o.range()[0]-20,u.range()[0]-20,null,null]),i.push([o.range()[1]+20,u.range()[1]+20,null,null]),i.push([o.range()[0]-20,u.range()[0]+20,null,null]),i.push([o.range()[1]+20,u.range()[1]-20,null,null]));var h=d3.geom.polygon([[-10,-10],[-10,r+10],[n+10,r+10],[n+10,-10]]),p=1e-6;i=i.sort(function(e,t){return e[0]-t[0]||e[1]-t[1]});for(var d=0;d<i.length-1;)Math.abs(i[d][0]-i[d+1][0])<p&&Math.abs(i[d][1]-i[d+1][1])<p?i.splice(d+1,1):d++;var v=d3.geom.voronoi(i).map(function(e,t){return{data:h.clip(e),series:i[t][2],point:i[t][3]}}),m=X.select(".nv-point-paths").selectAll("path").data(v);m.enter().append("path").attr("class",function(e,t){return"nv-path-"+t}),m.exit().remove(),m.attr("d",function(e){return!e||!e.data||e.data.length===0?"M 0 0":"M"+e.data.join("L")+"Z"});var y=function(e,n){if(F)return 0;var r=I[e.series];if(typeof r=="undefined")return;var i=r.values[e.point];n({point:i,series:r,pos:[o(f(i,e.point))+t.left,u(l(i,e.point))+t.top],seriesIndex:e.series,pointIndex:e.point})};m.on("click",function(e){y(e,_.elementClick)}).on("mouseover",function(e){y(e,_.elementMouseover)}).on("mouseout",function(e,t){y(e,_.elementMouseout)})}else X.select(".nv-groups").selectAll(".nv-group").selectAll(".nv-point").on("click",function(e,n){if(F||!I[e.series])return 0;var r=I[e.series],i=r.values[n];_.elementClick({point:i,series:r,pos:[o(f(i,n))+t.left,u(l(i,n))+t.top],seriesIndex:e.series,pointIndex:n})}).on("mouseover",function(e,n){if(F||!I[e.series])return 0;var r=I[e.series],i=r.values[n];_.elementMouseover({point:i,series:r,pos:[o(f(i,n))+t.left,u(l(i,n))+t.top],seriesIndex:e.series,pointIndex:n})}).on("mouseout",function(e,t){if(F||!I[e.series])return 0;var n=I[e.series],r=n.values[t];_.elementMouseout({point:r,series:n,seriesIndex:e.series,pointIndex:t})});F=!1}var q=n-t.left-t.right,R=r-t.top-t.bottom,U=d3.select(this);I.forEach(function(e,t){e.values.forEach(function(e){e.series=t})});var W=N&&C&&A?[]:d3.merge(I.map(function(e){return e.values.map(function(e,t){return{x:f(e,t),y:l(e,t),size:c(e,t)}})}));o.domain(N||d3.extent(W.map(function(e){return e.x}).concat(d))),w&&I[0]?o.range(k||[(q*E+q)/(2*I[0].values.length),q-q*(1+E)/(2*I[0].values.length)]):o.range(k||[0,q]),u.domain(C||d3.extent(W.map(function(e){return e.y}).concat(v))).range(L||[R,0]),a.domain(A||d3.extent(W.map(function(e){return e.size}).concat(m))).range(O||[16,256]);if(o.domain()[0]===o.domain()[1]||u.domain()[0]===u.domain()[1])M=!0;o.domain()[0]===o.domain()[1]&&(o.domain()[0]?o.domain([o.domain()[0]-o.domain()[0]*.01,o.domain()[1]+o.domain()[1]*.01]):o.domain([-1,1])),u.domain()[0]===u.domain()[1]&&(u.domain()[0]?u.domain([u.domain()[0]-u.domain()[0]*.01,u.domain()[1]+u.domain()[1]*.01]):u.domain([-1,1])),isNaN(o.domain()[0])&&o.domain([-1,1]),isNaN(u.domain()[0])&&u.domain([-1,1]),P=P||o,H=H||u,B=B||a;var X=U.selectAll("g.nv-wrap.nv-scatter").data([I]),V=X.enter().append("g").attr("class","nvd3 nv-wrap nv-scatter nv-chart-"+s+(M?" nv-single-point":"")),$=V.append("defs"),J=V.append("g"),K=X.select("g");J.append("g").attr("class","nv-groups"),J.append("g").attr("class","nv-point-paths"),X.attr("transform","translate("+t.left+","+t.top+")"),$.append("clipPath").attr("id","nv-edge-clip-"+s).append("rect"),X.select("#nv-edge-clip-"+s+" rect").attr("width",q).attr("height",R>0?R:0),K.attr("clip-path",S?"url(#nv-edge-clip-"+s+")":""),F=!0;var G=X.select(".nv-groups").selectAll(".nv-group").data(function(e){return e},function(e){return e.key});G.enter().append("g").style("stroke-opacity",1e-6).style("fill-opacity",1e-6),G.exit().remove(),G.attr("class",function(e,t){return"nv-group nv-series-"+t}).classed("hover",function(e){return e.hover}),G.style("fill",function(e,t){return i(e,t)}).style("stroke",function(e,t){return i(e,t)}).style("stroke-opacity",1).style("fill-opacity",.5);if(p){var Y=G.selectAll("circle.nv-point").data(function(e){return e.values},y);Y.enter().append("circle").style("fill",function(e,t){return e.color}).style("stroke",function(e,t){return e.color}).attr("cx",function(t,n){return e.utils.NaNtoZero(P(f(t,n)))}).attr("cy",function(t,n){return e.utils.NaNtoZero(H(l(t,n)))}).attr("r",function(e,t){return Math.sqrt(a(c(e,t))/Math.PI)}),Y.exit().remove(),G.exit().selectAll("path.nv-point").attr("cx",function(t,n){return e.utils.NaNtoZero(o(f(t,n)))}).attr("cy",function(t,n){return e.utils.NaNtoZero(u(l(t,n)))}).remove(),Y.each(function(e,t){d3.select(this).classed("nv-point",!0).classed("nv-point-"+t,!0).classed("hover",!1)}),Y.attr("cx",function(t,n){return e.utils.NaNtoZero(o(f(t,n)))}).attr("cy",function(t,n){return e.utils.NaNtoZero(u(l(t,n)))}).attr("r",function(e,t){return Math.sqrt(a(c(e,t))/Math.PI)})}else{var Y=G.selectAll("path.nv-point").data(function(e){return e.values});Y.enter().append("path").style("fill",function(e,t){return e.color}).style("stroke",function(e,t){return e.color}).attr("transform",function(e,t){return"translate("+P(f(e,t))+","+H(l(e,t))+")"}).attr("d",d3.svg.symbol().type(h).size(function(e,t){return a(c(e,t))})),Y.exit().remove(),G.exit().selectAll("path.nv-point").attr("transform",function(e,t){return"translate("+o(f(e,t))+","+u(l(e,t))+")"}).remove(),Y.each(function(e,t){d3.select(this).classed("nv-point",!0).classed("nv-point-"+t,!0).classed("hover",!1)}),Y.attr("transform",function(e,t){return"translate("+o(f(e,t))+","+u(l(e,t))+")"}).attr("d",d3.svg.symbol().type(h).size(function(e,t){return a(c(e,t))}))}clearTimeout(j),j=setTimeout(Q,300),P=o.copy(),H=u.copy(),B=a.copy()}),I}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=e.utils.defaultColor(),s=Math.floor(Math.random()*1e5),o=d3.scale.linear(),u=d3.scale.linear(),a=d3.scale.linear(),f=function(e){return e.x},l=function(e){return e.y},c=function(e){return e.size||1},h=function(e){return e.shape||"circle"},p=!0,d=[],v=[],m=[],g=!0,y=null,b=function(e){return!e.notActive},w=!1,E=.1,S=!1,x=!0,T=function(){return 25},N=null,C=null,k=null,L=null,A=null,O=null,M=!1,_=d3.dispatch("elementClick","elementMouseover","elementMouseout"),D=!0,P,H,B,j,F=!1;return I.clearHighlights=function(){d3.selectAll(".nv-chart-"+s+" .nv-point.hover").classed("hover",!1)},I.highlightPoint=function(e,t,n){d3.select(".nv-chart-"+s+" .nv-series-"+e+" .nv-point-"+t).classed("hover",n)},_.on("elementMouseover.point",function(e){g&&I.highlightPoint(e.seriesIndex,e.pointIndex,!0)}),_.on("elementMouseout.point",function(e){g&&I.highlightPoint(e.seriesIndex,e.pointIndex,!1)}),I.dispatch=_,I.options=e.utils.optionsFunc.bind(I),I.x=function(e){return arguments.length?(f=d3.functor(e),I):f},I.y=function(e){return arguments.length?(l=d3.functor(e),I):l},I.size=function(e){return arguments.length?(c=d3.functor(e),I):c},I.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,I):t},I.width=function(e){return arguments.length?(n=e,I):n},I.height=function(e){return arguments.length?(r=e,I):r},I.xScale=function(e){return arguments.length?(o=e,I):o},I.yScale=function(e){return arguments.length?(u=e,I):u},I.zScale=function(e){return arguments.length?(a=e,I):a},I.xDomain=function(e){return arguments.length?(N=e,I):N},I.yDomain=function(e){return arguments.length?(C=e,I):C},I.sizeDomain=function(e){return arguments.length?(A=e,I):A},I.xRange=function(e){return arguments.length?(k=e,I):k},I.yRange=function(e){return arguments.length?(L=e,I):L},I.sizeRange=function(e){return arguments.length?(O=e,I):O},I.forceX=function(e){return arguments.length?(d=e,I):d},I.forceY=function(e){return arguments.length?(v=e,I):v},I.forceSize=function(e){return arguments.length?(m=e,I):m},I.interactive=function(e){return arguments.length?(g=e,I):g},I.pointKey=function(e){return arguments.length?(y=e,I):y},I.pointActive=function(e){return arguments.length?(b=e,I):b},I.padData=function(e){return arguments.length?(w=e,I):w},I.padDataOuter=function(e){return arguments.length?(E=e,I):E},I.clipEdge=function(e){return arguments.length?(S=e,I):S},I.clipVoronoi=function(e){return arguments.length?(x=e,I):x},I.useVoronoi=function(e){return arguments.length?(D=e,D===!1&&(x=!1),I):D},I.clipRadius=function(e){return arguments.length?(T=e,I):T},I.color=function(t){return arguments.length?(i=e.utils.getColor(t),I):i},I.shape=function(e){return arguments.length?(h=e,I):h},I.onlyCircles=function(e){return arguments.length?(p=e,I):p},I.id=function(e){return arguments.length?(s=e,I):s},I.singlePoint=function(e){return arguments.length?(M=e,I):M},I},e.models.scatterChart=function(){function F(e){return e.each(function(e){function J(){if(T)return W.select(".nv-point-paths").style("pointer-events","all"),!1;W.select(".nv-point-paths").style("pointer-events","none");var i=d3.mouse(this);h.distortion(x).focus(i[0]),p.distortion(x).focus(i[1]),W.select(".nv-scatterWrap").call(t),b&&W.select(".nv-x.nv-axis").call(n),w&&W.select(".nv-y.nv-axis").call(r),W.select(".nv-distributionX").datum(e.filter(function(e){return!e.disabled})).call(o),W.select(".nv-distributionY").datum(e.filter(function(e){return!e.disabled})).call(u)}var C=d3.select(this),k=this,L=(f||parseInt(C.style("width"))||960)-a.left-a.right,D=(l||parseInt(C.style("height"))||400)-a.top-a.bottom;F.update=function(){C.call(F)},F.container=this,A.disabled=e.map(function(e){return!!e.disabled});if(!O){var I;O={};for(I in A)A[I]instanceof Array?O[I]=A[I].slice(0):O[I]=A[I]}if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var q=C.selectAll(".nv-noData").data([_]);return q.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),q.attr("x",a.left+L/2).attr("y",a.top+D/2).text(function(e){return e}),F}C.selectAll(".nv-noData").remove(),P=P||h,H=H||p;var R=C.selectAll("g.nv-wrap.nv-scatterChart").data([e]),U=R.enter().append("g").attr("class","nvd3 nv-wrap nv-scatterChart nv-chart-"+t.id()),z=U.append("g"),W=R.select("g");z.append("rect").attr("class","nvd3 nv-background"),z.append("g").attr("class","nv-x nv-axis"),z.append("g").attr("class","nv-y nv-axis"),z.append("g").attr("class","nv-scatterWrap"),z.append("g").attr("class","nv-distWrap"),z.append("g").attr("class","nv-legendWrap"),z.append("g").attr("class","nv-controlsWrap");if(y){var X=S?L/2:L;i.width(X),R.select(".nv-legendWrap").datum(e).call(i),a.top!=i.height()&&(a.top=i.height(),D=(l||parseInt(C.style("height"))||400)-a.top-a.bottom),R.select(".nv-legendWrap").attr("transform","translate("+(L-X)+","+ -a.top+")")}S&&(s.width(180).color(["#444"]),W.select(".nv-controlsWrap").datum(j).attr("transform","translate(0,"+ -a.top+")").call(s)),R.attr("transform","translate("+a.left+","+a.top+")"),E&&W.select(".nv-y.nv-axis").attr("transform","translate("+L+",0)"),t.width(L).height(D).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),d!==0&&t.xDomain(null),v!==0&&t.yDomain(null),R.select(".nv-scatterWrap").datum(e.filter(function(e){return!e.disabled})).call(t);if(d!==0){var V=h.domain()[1]-h.domain()[0];t.xDomain([h.domain()[0]-d*V,h.domain()[1]+d*V])}if(v!==0){var $=p.domain()[1]-p.domain()[0];t.yDomain([p.domain()[0]-v*$,p.domain()[1]+v*$])}(v!==0||d!==0)&&R.select(".nv-scatterWrap").datum(e.filter(function(e){return!e.disabled})).call(t),b&&(n.scale(h).ticks(n.ticks()&&n.ticks().length?n.ticks():L/100).tickSize(-D,0),W.select(".nv-x.nv-axis").attr("transform","translate(0,"+p.range()[0]+")").call(n)),w&&(r.scale(p).ticks(r.ticks()&&r.ticks().length?r.ticks():D/36).tickSize(-L,0),W.select(".nv-y.nv-axis").call(r)),m&&(o.getData(t.x()).scale(h).width(L).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),z.select(".nv-distWrap").append("g").attr("class","nv-distributionX"),W.select(".nv-distributionX").attr("transform","translate(0,"+p.range()[0]+")").datum(e.filter(function(e){return!e.disabled})).call(o)),g&&(u.getData(t.y()).scale(p).width(D).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),z.select(".nv-distWrap").append("g").attr("class","nv-distributionY"),W.select(".nv-distributionY").attr("transform","translate("+(E?L:-u.size())+",0)").datum(e.filter(function(e){return!e.disabled})).call(u)),d3.fisheye&&(W.select(".nv-background").attr("width",L).attr("height",D),W.select(".nv-background").on("mousemove",J),W.select(".nv-background").on("click",function(){T=!T}),t.dispatch.on("elementClick.freezeFisheye",function(){T=!T})),s.dispatch.on("legendClick",function(e,i){e.disabled=!e.disabled,x=e.disabled?0:2.5,W.select(".nv-background").style("pointer-events",e.disabled?"none":"all"),W.select(".nv-point-paths").style("pointer-events",e.disabled?"all":"none"),e.disabled?(h.distortion(x).focus(0),p.distortion(x).focus(0),W.select(".nv-scatterWrap").call(t),W.select(".nv-x.nv-axis").call(n),W.select(".nv-y.nv-axis").call(r)):T=!1,F.update()}),i.dispatch.on("stateChange",function(e){A.disabled=e.disabled,M.stateChange(A),F.update()}),t.dispatch.on("elementMouseover.tooltip",function(e){d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-distx-"+e.pointIndex).attr("y1",function(t,n){return e.pos[1]-D}),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-disty-"+e.pointIndex).attr("x2",e.pos[0]+o.size()),e.pos=[e.pos[0]+a.left,e.pos[1]+a.top],M.tooltipShow(e)}),M.on("tooltipShow",function(e){N&&B(e,k.parentNode)}),M.on("changeState",function(t){typeof t.disabled!="undefined"&&(e.forEach(function(e,n){e.disabled=t.disabled[n]}),A.disabled=t.disabled),F.update()}),P=h.copy(),H=p.copy()}),F}var t=e.models.scatter(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.models.legend(),o=e.models.distribution(),u=e.models.distribution(),a={top:30,right:20,bottom:50,left:75},f=null,l=null,c=e.utils.defaultColor(),h=d3.fisheye?d3.fisheye.scale(d3.scale.linear).distortion(0):t.xScale(),p=d3.fisheye?d3.fisheye.scale(d3.scale.linear).distortion(0):t.yScale(),d=0,v=0,m=!1,g=!1,y=!0,b=!0,w=!0,E=!1,S=!!d3.fisheye,x=0,T=!1,N=!0,C=function(e,t,n){return"<strong>"+t+"</strong>"},k=function(e,t,n){return"<strong>"+n+"</strong>"},L=null,A={},O=null,M=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),_="No Data Available.",D=0;t.xScale(h).yScale(p),n.orient("bottom").tickPadding(10),r.orient(E?"right":"left").tickPadding(10),o.axis("x"),u.axis("y"),s.updateState(!1);var P,H,B=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),f=i.pos[0]+(s.offsetLeft||0),l=p.range()[0]+a.top+(s.offsetTop||0),c=h.range()[0]+a.left+(s.offsetLeft||0),d=i.pos[1]+(s.offsetTop||0),v=n.tickFormat()(t.x()(i.point,i.pointIndex)),m=r.tickFormat()(t.y()(i.point,i.pointIndex));C!=null&&e.tooltip.show([f,l],C(i.series.key,v,m,i,F),"n",1,s,"x-nvtooltip"),k!=null&&e.tooltip.show([c,d],k(i.series.key,v,m,i,F),"e",1,s,"y-nvtooltip"),L!=null&&e.tooltip.show([o,u],L(i.series.key,v,m,i,F),i.value<0?"n":"s",null,s)},j=[{key:"Magnify",disabled:!0}];return t.dispatch.on("elementMouseout.tooltip",function(e){M.tooltipHide(e),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-distx-"+e.pointIndex).attr("y1",0),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-disty-"+e.pointIndex).attr("x2",u.size())}),M.on("tooltipHide",function(){N&&e.tooltip.cleanup()}),F.dispatch=M,F.scatter=t,F.legend=i,F.controls=s,F.xAxis=n,F.yAxis=r,F.distX=o,F.distY=u,d3.rebind(F,t,"id","interactive","pointActive","x","y","shape","size","xScale","yScale","zScale","xDomain","yDomain","xRange","yRange","sizeDomain","sizeRange","forceX","forceY","forceSize","clipVoronoi","clipRadius","useVoronoi"),F.options=e.utils.optionsFunc.bind(F),F.margin=function(e){return arguments.length?(a.top=typeof e.top!="undefined"?e.top:a.top,a.right=typeof e.right!="undefined"?e.right:a.right,a.bottom=typeof e.bottom!="undefined"?e.bottom:a.bottom,a.left=typeof e.left!="undefined"?e.left:a.left,F):a},F.width=function(e){return arguments.length?(f=e,F):f},F.height=function(e){return arguments.length?(l=e,F):l},F.color=function(t){return arguments.length?(c=e.utils.getColor(t),i.color(c),o.color(c),u.color(c),F):c},F.showDistX=function(e){return arguments.length?(m=e,F):m},F.showDistY=function(e){return arguments.length?(g=e,F):g},F.showControls=function(e){return arguments.length?(S=e,F):S},F.showLegend=function(e){return arguments.length?(y=e,F):y},F.showXAxis=function(e){return arguments.length?(b=e,F):b},F.showYAxis=function(e){return arguments.length?(w=e,F):w},F.rightAlignYAxis=function(e){return arguments.length?(E=e,r.orient(e?"right":"left"),F):E},F.fisheye=function(e){return arguments.length?(x=e,F):x},F.xPadding=function(e){return arguments.length?(d=e,F):d},F.yPadding=function(e){return arguments.length?(v=e,F):v},F.tooltips=function(e){return arguments.length?(N=e,F):N},F.tooltipContent=function(e){return arguments.length?(L=e,F):L},F.tooltipXContent=function(e){return arguments.length?(C=e,F):C},F.tooltipYContent=function(e){return arguments.length?(k=e,F):k},F.state=function(e){return arguments.length?(A=e,F):A},F.defaultState=function(e){return arguments.length?(O=e,F):O},F.noData=function(e){return arguments.length?(_=e,F):_},F.transitionDuration=function(e){return arguments.length?(D=e,F):D},F},e.models.scatterPlusLineChart=function(){function B(e){return e.each(function(e){function V(){if(S)return U.select(".nv-point-paths").style("pointer-events","all"),!1;U.select(".nv-point-paths").style("pointer-events","none");var i=d3.mouse(this);h.distortion(E).focus(i[0]),p.distortion(E).focus(i[1]),U.select(".nv-scatterWrap").datum(e.filter(function(e){return!e.disabled})).call(t),g&&U.select(".nv-x.nv-axis").call(n),y&&U.select(".nv-y.nv-axis").call(r),U.select(".nv-distributionX").datum(e.filter(function(e){return!e.disabled})).call(o),U.select(".nv-distributionY").datum(e.filter(function(e){return!e.disabled})).call(u)}var T=d3.select(this),N=this,C=(f||parseInt(T.style("width"))||960)-a.left-a.right,M=(l||parseInt(T.style("height"))||400)-a.top-a.bottom;B.update=function(){T.call(B)},B.container=this,k.disabled=e.map(function(e){return!!e.disabled});if(!L){var j;L={};for(j in k)k[j]instanceof Array?L[j]=k[j].slice(0):L[j]=k[j]}if(!e||!e.length||!e.filter(function(e){return e.values.length}).length){var F=T.selectAll(".nv-noData").data([O]);return F.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),F.attr("x",a.left+C/2).attr("y",a.top+M/2).text(function(e){return e}),B}T.selectAll(".nv-noData").remove(),h=t.xScale(),p=t.yScale(),_=_||h,D=D||p;var I=T.selectAll("g.nv-wrap.nv-scatterChart").data([e]),q=I.enter().append("g").attr("class","nvd3 nv-wrap nv-scatterChart nv-chart-"+t.id()),R=q.append("g"),U=I.select("g");R.append("rect").attr("class","nvd3 nv-background").style("pointer-events","none"),R.append("g").attr("class","nv-x nv-axis"),R.append("g").attr("class","nv-y nv-axis"),R.append("g").attr("class","nv-scatterWrap"),R.append("g").attr("class","nv-regressionLinesWrap"),R.append("g").attr("class","nv-distWrap"),R.append("g").attr("class","nv-legendWrap"),R.append("g").attr("class","nv-controlsWrap"),I.attr("transform","translate("+a.left+","+a.top+")"),b&&U.select(".nv-y.nv-axis").attr("transform","translate("+C+",0)"),m&&(i.width(C/2),I.select(".nv-legendWrap").datum(e).call(i),a.top!=i.height()&&(a.top=i.height(),M=(l||parseInt(T.style("height"))||400)-a.top-a.bottom),I.select(".nv-legendWrap").attr("transform","translate("+C/2+","+ -a.top+")")),w&&(s.width(180).color(["#444"]),U.select(".nv-controlsWrap").datum(H).attr("transform","translate(0,"+ -a.top+")").call(s)),t.width(C).height(M).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),I.select(".nv-scatterWrap").datum(e.filter(function(e){return!e.disabled})).call(t),I.select(".nv-regressionLinesWrap").attr("clip-path","url(#nv-edge-clip-"+t.id()+")");var z=I.select(".nv-regressionLinesWrap").selectAll(".nv-regLines").data(function(e){return e});z.enter().append("g").attr("class","nv-regLines");var W=z.selectAll(".nv-regLine").data(function(e){return[e]}),X=W.enter().append("line").attr("class","nv-regLine").style("stroke-opacity",0);W.attr("x1",h.range()[0]).attr("x2",h.range()[1]).attr("y1",function(e,t){return p(h.domain()[0]*e.slope+e.intercept)}).attr("y2",function(e,t){return p(h.domain()[1]*e.slope+e.intercept)}).style("stroke",function(e,t,n){return c(e,n)}).style("stroke-opacity",function(e,t){return e.disabled||typeof e.slope=="undefined"||typeof e.intercept=="undefined"?0:1}),g&&(n.scale(h).ticks(n.ticks()?n.ticks():C/100).tickSize(-M,0),U.select(".nv-x.nv-axis").attr("transform","translate(0,"+p.range()[0]+")").call(n)),y&&(r.scale(p).ticks(r.ticks()?r.ticks():M/36).tickSize(-C,0),U.select(".nv-y.nv-axis").call(r)),d&&(o.getData(t.x()).scale(h).width(C).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),R.select(".nv-distWrap").append("g").attr("class","nv-distributionX"),U.select(".nv-distributionX").attr("transform","translate(0,"+p.range()[0]+")").datum(e.filter(function(e){return!e.disabled})).call(o)),v&&(u.getData(t.y()).scale(p).width(M).color(e.map(function(e,t){return e.color||c(e,t)}).filter(function(t,n){return!e[n].disabled})),R.select(".nv-distWrap").append("g").attr("class","nv-distributionY"),U.select(".nv-distributionY").attr("transform","translate("+(b?C:-u.size())+",0)").datum(e.filter(function(e){return!e.disabled})).call(u)),d3.fisheye&&(U.select(".nv-background").attr("width",C).attr("height",M),U.select(".nv-background").on("mousemove",V),U.select(".nv-background").on("click",function(){S=!S}),t.dispatch.on("elementClick.freezeFisheye",function(){S=!S})),s.dispatch.on("legendClick",function(e,i){e.disabled=!e.disabled,E=e.disabled?0:2.5,U.select(".nv-background").style("pointer-events",e.disabled?"none":"all"),U.select(".nv-point-paths").style("pointer-events",e.disabled?"all":"none"),e.disabled?(h.distortion(E).focus(0),p.distortion(E).focus(0),U.select(".nv-scatterWrap").call(t),U.select(".nv-x.nv-axis").call(n),U.select(".nv-y.nv-axis").call(r)):S=!1,B.update()}),i.dispatch.on("stateChange",function(e){k=e,A.stateChange(k),B.update()}),t.dispatch.on("elementMouseover.tooltip",function(e){d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-distx-"+e.pointIndex).attr("y1",e.pos[1]-M),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-disty-"+e.pointIndex).attr("x2",e.pos[0]+o.size()),e.pos=[e.pos[0]+a.left,e.pos[1]+a.top],A.tooltipShow(e)}),A.on("tooltipShow",function(e){x&&P(e,N.parentNode)}),A.on("changeState",function(t){typeof t.disabled!="undefined"&&(e.forEach(function(e,n){e.disabled=t.disabled[n]}),k.disabled=t.disabled),B.update()}),_=h.copy(),D=p.copy()}),B}var t=e.models.scatter(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.models.legend(),o=e.models.distribution(),u=e.models.distribution(),a={top:30,right:20,bottom:50,left:75},f=null,l=null,c=e.utils.defaultColor(),h=d3.fisheye?d3.fisheye.scale(d3.scale.linear).distortion(0):t.xScale(),p=d3.fisheye?d3.fisheye.scale(d3.scale.linear).distortion(0):t.yScale(),d=!1,v=!1,m=!0,g=!0,y=!0,b=!1,w=!!d3.fisheye,E=0,S=!1,x=!0,T=function(e,t,n){return"<strong>"+t+"</strong>"},N=function(e,t,n){return"<strong>"+n+"</strong>"},C=function(e,t,n,r){return"<h3>"+e+"</h3>"+"<p>"+r+"</p>"},k={},L=null,A=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),O="No Data Available.",M=0;t.xScale(h).yScale(p),n.orient("bottom").tickPadding(10),r.orient(b?"right":"left").tickPadding(10),o.axis("x"),u.axis("y"),s.updateState(!1);var _,D,P=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),f=i.pos[0]+(s.offsetLeft||0),l=p.range()[0]+a.top+(s.offsetTop||0),c=h.range()[0]+a.left+(s.offsetLeft||0),d=i.pos[1]+(s.offsetTop||0),v=n.tickFormat()(t.x()(i.point,i.pointIndex)),m=r.tickFormat()(t.y()(i.point,i.pointIndex));T!=null&&e.tooltip.show([f,l],T(i.series.key,v,m,i,B),"n",1,s,"x-nvtooltip"),N!=null&&e.tooltip.show([c,d],N(i.series.key,v,m,i,B),"e",1,s,"y-nvtooltip"),C!=null&&e.tooltip.show([o,u],C(i.series.key,v,m,i.point.tooltip,i,B),i.value<0?"n":"s",null,s)},H=[{key:"Magnify",disabled:!0}];return t.dispatch.on("elementMouseout.tooltip",function(e){A.tooltipHide(e),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-distx-"+e.pointIndex).attr("y1",0),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-disty-"+e.pointIndex).attr("x2",u.size())}),A.on("tooltipHide",function(){x&&e.tooltip.cleanup()}),B.dispatch=A,B.scatter=t,B.legend=i,B.controls=s,B.xAxis=n,B.yAxis=r,B.distX=o,B.distY=u,d3.rebind(B,t,"id","interactive","pointActive","x","y","shape","size","xScale","yScale","zScale","xDomain","yDomain","xRange","yRange","sizeDomain","sizeRange","forceX","forceY","forceSize","clipVoronoi","clipRadius","useVoronoi"),B.options=e.utils.optionsFunc.bind(B),B.margin=function(e){return arguments.length?(a.top=typeof e.top!="undefined"?e.top:a.top,a.right=typeof e.right!="undefined"?e.right:a.right,a.bottom=typeof e.bottom!="undefined"?e.bottom:a.bottom,a.left=typeof e.left!="undefined"?e.left:a.left,B):a},B.width=function(e){return arguments.length?(f=e,B):f},B.height=function(e){return arguments.length?(l=e,B):l},B.color=function(t){return arguments.length?(c=e.utils.getColor(t),i.color(c),o.color(c),u.color(c),B):c},B.showDistX=function(e){return arguments.length?(d=e,B):d},B.showDistY=function(e){return arguments.length?(v=e,B):v},B.showControls=function(e){return arguments.length?(w=e,B):w},B.showLegend=function(e){return arguments.length?(m=e,B):m},B.showXAxis=function(e){return arguments.length?(g=e,B):g},B.showYAxis=function(e){return arguments.length?(y=e,B):y},B.rightAlignYAxis=function(e){return arguments.length?(b=e,r.orient(e?"right":"left"),B):b},B.fisheye=function(e){return arguments.length?(E=e,B):E},B.tooltips=function(e){return arguments.length?(x=e,B):x},B.tooltipContent=function(e){return arguments.length?(C=e,B):C},B.tooltipXContent=function(e){return arguments.length?(T=e,B):T},B.tooltipYContent=function(e){return arguments.length?(N=e,B):N},B.state=function(e){return arguments.length?(k=e,B):k},B.defaultState=function(e){return arguments.length?(L=e,B):L},B.noData=function(e){return arguments.length?(O=e,B):O},B.transitionDuration=function(e){return arguments.length?(M=e,B):M},B},e.models.sparkline=function(){function d(e){return e.each(function(e){var i=n-t.left-t.right,d=r-t.top-t.bottom,v=d3.select(this);s.domain(l||d3.extent(e,u)).range(h||[0,i]),o.domain(c||d3.extent(e,a)).range(p||[d,0]);var m=v.selectAll("g.nv-wrap.nv-sparkline").data([e]),g=m.enter().append("g").attr("class","nvd3 nv-wrap nv-sparkline"),b=g.append("g"),w=m.select("g");m.attr("transform","translate("+t.left+","+t.top+")");var E=m.selectAll("path").data(function(e){return[e]});E.enter().append("path"),E.exit().remove(),E.style("stroke",function(e,t){return e.color||f(e,t)}).attr("d",d3.svg.line().x(function(e,t){return s(u(e,t))}).y(function(e,t){return o(a(e,t))}));var S=m.selectAll("circle.nv-point").data(function(e){function n(t){if(t!=-1){var n=e[t];return n.pointIndex=t,n}return null}var t=e.map(function(e,t){return a(e,t)}),r=n(t.lastIndexOf(o.domain()[1])),i=n(t.indexOf(o.domain()[0])),s=n(t.length-1);return[i,r,s].filter(function(e){return e!=null})});S.enter().append("circle"),S.exit().remove(),S.attr("cx",function(e,t){return s(u(e,e.pointIndex))}).attr("cy",function(e,t){return o(a(e,e.pointIndex))}).attr("r",2).attr("class",function(e,t){return u(e,e.pointIndex)==s.domain()[1]?"nv-point nv-currentValue":a(e,e.pointIndex)==o.domain()[0]?"nv-point nv-minValue":"nv-point nv-maxValue"})}),d}var t={top:2,right:0,bottom:2,left:0},n=400,r=32,i=!0,s=d3.scale.linear(),o=d3.scale.linear(),u=function(e){return e.x},a=function(e){return e.y},f=e.utils.getColor(["#000"]),l,c,h,p;return d.options=e.utils.optionsFunc.bind(d),d.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,d):t},d.width=function(e){return arguments.length?(n=e,d):n},d.height=function(e){return arguments.length?(r=e,d):r},d.x=function(e){return arguments.length?(u=d3.functor(e),d):u},d.y=function(e){return arguments.length?(a=d3.functor(e),d):a},d.xScale=function(e){return arguments.length?(s=e,d):s},d.yScale=function(e){return arguments.length?(o=e,d):o},d.xDomain=function(e){return arguments.length?(l=e,d):l},d.yDomain=function(e){return arguments.length?(c=e,d):c},d.xRange=function(e){return arguments.length?(h=e,d):h},d.yRange=function(e){return arguments.length?(p=e,d):p},d.animate=function(e){return arguments.length?(i=e,d):i},d.color=function(t){return arguments.length?(f=e.utils.getColor(t),d):f},d},e.models.sparklinePlus=function(){function v(e){return e.each(function(c){function O(){if(a)return;var e=C.selectAll(".nv-hoverValue").data(u),r=e.enter().append("g").attr("class","nv-hoverValue").style("stroke-opacity",0).style("fill-opacity",0);e.exit().style("stroke-opacity",0).style("fill-opacity",0).remove(),e.attr("transform",function(e){return"translate("+s(t.x()(c[e],e))+",0)"}).style("stroke-opacity",1).style("fill-opacity",1);if(!u.length)return;r.append("line").attr("x1",0).attr("y1",-n.top).attr("x2",0).attr("y2",b),r.append("text").attr("class","nv-xValue").attr("x",-6).attr("y",-n.top).attr("text-anchor","end").attr("dy",".9em"),C.select(".nv-hoverValue .nv-xValue").text(f(t.x()(c[u[0]],u[0]))),r.append("text").attr("class","nv-yValue").attr("x",6).attr("y",-n.top).attr("text-anchor","start").attr("dy",".9em"),C.select(".nv-hoverValue .nv-yValue").text(l(t.y()(c[u[0]],u[0])))}function M(){function r(e,n){var r=Math.abs(t.x()(e[0],0)-n),i=0;for(var s=0;s<e.length;s++)Math.abs(t.x()(e[s],s)-n)<r&&(r=Math.abs(t.x()(e[s],s)-n),i=s);return i}if(a)return;var e=d3.mouse(this)[0]-n.left;u=[r(c,Math.round(s.invert(e)))],O()}var m=d3.select(this),g=(r||parseInt(m.style("width"))||960)-n.left-n.right,b=(i||parseInt(m.style("height"))||400)-n.top-n.bottom;v.update=function(){v(e)},v.container=this;if(!c||!c.length){var w=m.selectAll(".nv-noData").data([d]);return w.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),w.attr("x",n.left+g/2).attr("y",n.top+b/2).text(function(e){return e}),v}m.selectAll(".nv-noData").remove();var E=t.y()(c[c.length-1],c.length-1);s=t.xScale(),o=t.yScale();var S=m.selectAll("g.nv-wrap.nv-sparklineplus").data([c]),T=S.enter().append("g").attr("class","nvd3 nv-wrap nv-sparklineplus"),N=T.append("g"),C=S.select("g");N.append("g").attr("class","nv-sparklineWrap"),N.append("g").attr("class","nv-valueWrap"),N.append("g").attr("class","nv-hoverArea"),S.attr("transform","translate("+n.left+","+n.top+")");var k=C.select(".nv-sparklineWrap");t.width(g).height(b),k.call(t);var L=C.select(".nv-valueWrap"),A=L.selectAll(".nv-currentValue").data([E]);A.enter().append("text").attr("class","nv-currentValue").attr("dx",p?-8:8).attr("dy",".9em").style("text-anchor",p?"end":"start"),A.attr("x",g+(p?n.right:0)).attr("y",h?function(e){return o(e)}:0).style("fill",t.color()(c[c.length-1],c.length-1)).text(l(E)),N.select(".nv-hoverArea").append("rect").on("mousemove",M).on("click",function(){a=!a}).on("mouseout",function(){u=[],O()}),C.select(".nv-hoverArea rect").attr("transform",function(e){return"translate("+ -n.left+","+ -n.top+")"}).attr("width",g+n.left+n.right).attr("height",b+n.top)}),v}var t=e.models.sparkline(),n={top:15,right:100,bottom:10,left:50},r=null,i=null,s,o,u=[],a=!1,f=d3.format(",r"),l=d3.format(",.2f"),c=!0,h=!0,p=!1,d="No Data Available.";return v.sparkline=t,d3.rebind(v,t,"x","y","xScale","yScale","color"),v.options=e.utils.optionsFunc.bind(v),v.margin=function(e){return arguments.length?(n.top=typeof e.top!="undefined"?e.top:n.top,n.right=typeof e.right!="undefined"?e.right:n.right,n.bottom=typeof e.bottom!="undefined"?e.bottom:n.bottom,n.left=typeof e.left!="undefined"?e.left:n.left,v):n},v.width=function(e){return arguments.length?(r=e,v):r},v.height=function(e){return arguments.length?(i=e,v):i},v.xTickFormat=function(e){return arguments.length?(f=e,v):f},v.yTickFormat=function(e){return arguments.length?(l=e,v):l},v.showValue=function(e){return arguments.length?(c=e,v):c},v.alignValue=function(e){return arguments.length?(h=e,v):h},v.rightAlignValue=function(e){return arguments.length?(p=e,v):p},v.noData=function(e){return arguments.length?(d=e,v):d},v},e.models.stackedArea=function(){function g(e){return e.each(function(e){var a=n-t.left-t.right,b=r-t.top-t.bottom,w=d3.select(this);p=v.xScale(),d=v.yScale();var E=e;e.forEach(function(e,t){e.seriesIndex=t,e.values=e.values.map(function(e,n){return e.index=n,e.seriesIndex=t,e})});var S=e.filter(function(e){return!e.disabled});e=d3.layout.stack().order(l).offset(f).values(function(e){return e.values}).x(o).y(u).out(function(e,t,n){var r=u(e)===0?0:n;e.display={y:r,y0:t}})(S);var T=w.selectAll("g.nv-wrap.nv-stackedarea").data([e]),N=T.enter().append("g").attr("class","nvd3 nv-wrap nv-stackedarea"),C=N.append("defs"),k=N.append("g"),L=T.select("g");k.append("g").attr("class","nv-areaWrap"),k.append("g").attr("class","nv-scatterWrap"),T.attr("transform","translate("+t.left+","+t.top+")"),v.width(a).height(b).x(o).y(function(e){return e.display.y+e.display.y0}).forceY([0]).color(e.map(function(e,t){return e.color||i(e,e.seriesIndex)}));var A=L.select(".nv-scatterWrap").datum(e);A.call(v),C.append("clipPath").attr("id","nv-edge-clip-"+s).append("rect"),T.select("#nv-edge-clip-"+s+" rect").attr("width",a).attr("height",b),L.attr("clip-path",h?"url(#nv-edge-clip-"+s+")":"");var O=d3.svg.area().x(function(e,t){return p(o(e,t))}).y0(function(e){return d(e.display.y0)}).y1(function(e){return d(e.display.y+e.display.y0)}).interpolate(c),M=d3.svg.area().x(function(e,t){return p(o(e,t))}).y0(function(e){return d(e.display.y0)}).y1(function(e){return d(e.display.y0)}),_=L.select(".nv-areaWrap").selectAll("path.nv-area").data(function(e){return e});_.enter().append("path").attr("class",function(e,t){return"nv-area nv-area-"+t}).attr("d",function(e,t){return M(e.values,e.seriesIndex)}).on("mouseover",function(e,t){d3.select(this).classed("hover",!0),m.areaMouseover({point:e,series:e.key,pos:[d3.event.pageX,d3.event.pageY],seriesIndex:e.seriesIndex})}).on("mouseout",function(e,t){d3.select(this).classed("hover",!1),m.areaMouseout({point:e,series:e.key,pos:[d3.event.pageX,d3.event.pageY],seriesIndex:e.seriesIndex})}).on("click",function(e,t){d3.select(this).classed("hover",!1),m.areaClick({point:e,series:e.key,pos:[d3.event.pageX,d3.event.pageY],seriesIndex:e.seriesIndex})}),_.exit().remove(),_.style("fill",function(e,t){return e.color||i(e,e.seriesIndex)}).style("stroke",function(e,t){return e.color||i(e,e.seriesIndex)}),_.attr("d",function(e,t){return O(e.values,t)}),v.dispatch.on("elementMouseover.area",function(e){L.select(".nv-chart-"+s+" .nv-area-"+e.seriesIndex).classed("hover",!0)}),v.dispatch.on("elementMouseout.area",function(e){L.select(".nv-chart-"+s+" .nv-area-"+e.seriesIndex).classed("hover",!1)}),g.d3_stackedOffset_stackPercent=function(e){var t=e.length,n=e[0].length,r=1/t,i,s,o,a=[];for(s=0;s<n;++s){for(i=0,o=0;i<E.length;i++)o+=u(E[i].values[s]);if(o)for(i=0;i<t;i++)e[i][s][1]/=o;else for(i=0;i<t;i++)e[i][s][1]=r}for(s=0;s<n;++s)a[s]=0;return a}}),g}var t={top:0,right:0,bottom:0,left:0},n=960,r=500,i=e.utils.defaultColor(),s=Math.floor(Math.random()*1e5),o=function(e){return e.x},u=function(e){return e.y},a="stack",f="zero",l="default",c="linear",h=!1,p,d,v=e.models.scatter(),m=d3.dispatch("tooltipShow","tooltipHide","areaClick","areaMouseover","areaMouseout");return v.size(2.2).sizeDomain([2.2,2.2]),v.dispatch.on("elementClick.area",function(e){m.areaClick(e)}),v.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],m.tooltipShow(e)}),v.dispatch.on("elementMouseout.tooltip",function(e){m.tooltipHide(e)}),g.dispatch=m,g.scatter=v,d3.rebind(g,v,"interactive","size","xScale","yScale","zScale","xDomain","yDomain","xRange","yRange","sizeDomain","forceX","forceY","forceSize","clipVoronoi","useVoronoi","clipRadius","highlightPoint","clearHighlights"),g.options=e.utils.optionsFunc.bind(g),g.x=function(e){return arguments.length?(o=d3.functor(e),g):o},g.y=function(e){return arguments.length?(u=d3.functor(e),g):u},g.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,g):t},g.width=function(e){return arguments.length?(n=e,g):n},g.height=function(e){return arguments.length?(r=e,g):r},g.clipEdge=function(e){return arguments.length?(h=e,g):h},g.color=function(t){return arguments.length?(i=e.utils.getColor(t),g):i},g.offset=function(e){return arguments.length?(f=e,g):f},g.order=function(e){return arguments.length?(l=e,g):l},g.style=function(e){if(!arguments.length)return a;a=e;switch(a){case"stack":g.offset("zero"),g.order("default");break;case"stream":g.offset("wiggle"),g.order("inside-out");break;case"stream-center":g.offset("silhouette"),g.order("inside-out");break;case"expand":g.offset("expand"),g.order("default");break;case"stack_percent":g.offset(g.d3_stackedOffset_stackPercent),g.order("default")}return g},g.interpolate=function(e){return arguments.length?(c=e,g):c},g},e.models.stackedAreaChart=function(){function M(y){return y.each(function(y){var A=d3.select(this),_=this,D=(a||parseInt(A.style("width"))||960)-u.left-u.right,P=(f||parseInt(A.style("height"))||400)-u.top-u.bottom;M.update=function(){A.call(M)},M.container=this,S.disabled=y.map(function(e){return!!e.disabled});if(!x){var H;x={};for(H in S)S[H]instanceof Array?x[H]=S[H].slice(0):x[H]=S[H]}if(!y||!y.length||!y.filter(function(e){return e.values.length}).length){var B=A.selectAll(".nv-noData").data([T]);return B.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),B.attr("x",u.left+D/2).attr("y",u.top+P/2).text(function(e){return e}),M}A.selectAll(".nv-noData").remove(),b=t.xScale(),w=t.yScale();var j=A.selectAll("g.nv-wrap.nv-stackedAreaChart").data([y]),F=j.enter().append("g").attr("class","nvd3 nv-wrap nv-stackedAreaChart").append("g"),I=j.select("g");F.append("rect").style("opacity",0),F.append("g").attr("class","nv-x nv-axis"),F.append("g").attr("class","nv-y nv-axis"),F.append("g").attr("class","nv-stackedWrap"),F.append("g").attr("class","nv-legendWrap"),F.append("g").attr("class","nv-controlsWrap"),F.append("g").attr("class","nv-interactive"),I.select("rect").attr("width",D).attr("height",P);if(h){var q=c?D-C:D;i.width(q),I.select(".nv-legendWrap").datum(y).call(i),u.top!=i.height()&&(u.top=i.height(),P=(f||parseInt(A.style("height"))||400)-u.top-u.bottom),I.select(".nv-legendWrap").attr("transform","translate("+(D-q)+","+ -u.top+")")}if(c){var R=[{key:L.stacked||"Stacked",metaKey:"Stacked",disabled:t.style()!="stack",style:"stack"},{key:L.stream||"Stream",metaKey:"Stream",disabled:t.style()!="stream",style:"stream"},{key:L.expanded||"Expanded",metaKey:"Expanded",disabled:t.style()!="expand",style:"expand"},{key:L.stack_percent||"Stack %",metaKey:"Stack_Percent",disabled:t.style()!="stack_percent",style:"stack_percent"}];C=k.length/3*260,R=R.filter(function(e){return k.indexOf(e.metaKey)!==-1}),s.width(C).color(["#444","#444","#444"]),I.select(".nv-controlsWrap").datum(R).call(s),u.top!=Math.max(s.height(),i.height())&&(u.top=Math.max(s.height(),i.height()),P=(f||parseInt(A.style("height"))||400)-u.top-u.bottom),I.select(".nv-controlsWrap").attr("transform","translate(0,"+ -u.top+")")}j.attr("transform","translate("+u.left+","+u.top+")"),v&&I.select(".nv-y.nv-axis").attr("transform","translate("+D+",0)"),m&&(o.width(D).height(P).margin({left:u.left,top:u.top}).svgContainer(A).xScale(b),j.select(".nv-interactive").call(o)),t.width(D).height(P);var U=I.select(".nv-stackedWrap").datum(y);U.call(t),p&&(n.scale(b).ticks(D/100).tickSize(-P,0),I.select(".nv-x.nv-axis").attr("transform","translate(0,"+P+")"),I.select(".nv-x.nv-axis").call(n)),d&&(r.scale(w).ticks(t.offset()=="wiggle"?0:P/36).tickSize(-D,0).setTickFormat(t.style()=="expand"||t.style()=="stack_percent"?d3.format("%"):E),I.select(".nv-y.nv-axis").call(r)),t.dispatch.on("areaClick.toggle",function(e){y.filter(function(e){return!e.disabled}).length===1?y.forEach(function(e){e.disabled=!1}):y.forEach(function(t,n){t.disabled=n!=e.seriesIndex}),S.disabled=y.map(function(e){return!!e.disabled}),N.stateChange(S),M.update()}),i.dispatch.on("stateChange",function(e){S.disabled=e.disabled,N.stateChange(S),M.update()}),s.dispatch.on("legendClick",function(e,n){if(!e.disabled)return;R=R.map(function(e){return e.disabled=!0,e}),e.disabled=!1,t.style(e.style),S.style=t.style(),N.stateChange(S),M.update()}),o.dispatch.on("elementMousemove",function(i){t.clearHighlights();var s,a,f,c=[];y.filter(function(e,t){return e.seriesIndex=t,!e.disabled}).forEach(function(n,r){a=e.interactiveBisect(n.values,i.pointXValue,M.x()),t.highlightPoint(r,a,!0);var o=n.values[a];if(typeof o=="undefined")return;typeof s=="undefined"&&(s=o),typeof f=="undefined"&&(f=M.xScale()(M.x()(o,a)));var u=t.style()=="expand"?o.display.y:M.y()(o,a);c.push({key:n.key,value:u,color:l(n,n.seriesIndex),stackedValue:o.display})}),c.reverse();if(c.length>2){var h=M.yScale().invert(i.mouseY),p=Infinity,d=null;c.forEach(function(e,t){h=Math.abs(h);var n=Math.abs(e.stackedValue.y0),r=Math.abs(e.stackedValue.y);if(h>=n&&h<=r+n){d=t;return}}),d!=null&&(c[d].highlight=!0)}var v=n.tickFormat()(M.x()(s,a)),m=t.style()=="expand"?function(e,t){return d3.format(".1%")(e)}:function(e,t){return r.tickFormat()(e)};o.tooltip.position({left:f+u.left,top:i.mouseY+u.top}).chartContainer(_.parentNode).enabled(g).valueFormatter(m).data({value:v,series:c})(),o.renderGuideLine(f)}),o.dispatch.on("elementMouseout",function(e){N.tooltipHide(),t.clearHighlights()}),N.on("tooltipShow",function(e){g&&O(e,_.parentNode)}),N.on("changeState",function(e){typeof e.disabled!="undefined"&&y.length===e.disabled.length&&(y.forEach(function(t,n){t.disabled=e.disabled[n]}),S.disabled=e.disabled),typeof e.style!="undefined"&&t.style(e.style),M.update()})}),M}var t=e.models.stackedArea(),n=e.models.axis(),r=e.models.axis(),i=e.models.legend(),s=e.models.legend(),o=e.interactiveGuideline(),u={top:30,right:25,bottom:50,left:60},a=null,f=null,l=e.utils.defaultColor(),c=!0,h=!0,p=!0,d=!0,v=!1,m=!1,g=!0,y=function(e,t,n,r,i){return"<h3>"+e+"</h3>"+"<p>"+n+" on "+t+"</p>"},b,w,E=d3.format(",.2f"),S={style:t.style()},x=null,T="No Data Available.",N=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState"),C=250,k=["Stacked","Stream","Expanded"],L={},A=0;n.orient("bottom").tickPadding(7),r.orient(v?"right":"left"),s.updateState(!1);var O=function(i,s){var o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),a=n.tickFormat()(t.x()(i.point,i.pointIndex)),f=r.tickFormat()(t.y()(i.point,i.pointIndex)),l=y(i.series.key,a,f,i,M);e.tooltip.show([o,u],l,i.value<0?"n":"s",null,s)};return t.dispatch.on("tooltipShow",function(e){e.pos=[e.pos[0]+u.left,e.pos[1]+u.top],N.tooltipShow(e)}),t.dispatch.on("tooltipHide",function(e){N.tooltipHide(e)}),N.on("tooltipHide",function(){g&&e.tooltip.cleanup()}),M.dispatch=N,M.stacked=t,M.legend=i,M.controls=s,M.xAxis=n,M.yAxis=r,M.interactiveLayer=o,d3.rebind(M,t,"x","y","size","xScale","yScale","xDomain","yDomain","xRange","yRange","sizeDomain","interactive","useVoronoi","offset","order","style","clipEdge","forceX","forceY","forceSize","interpolate"),M.options=e.utils.optionsFunc.bind(M),M.margin=function(e){return arguments.length?(u.top=typeof e.top!="undefined"?e.top:u.top,u.right=typeof e.right!="undefined"?e.right:u.right,u.bottom=typeof e.bottom!="undefined"?e.bottom:u.bottom,u.left=typeof e.left!="undefined"?e.left:u.left,M):u},M.width=function(e){return arguments.length?(a=e,M):a},M.height=function(e){return arguments.length?(f=e,M):f},M.color=function(n){return arguments.length?(l=e.utils.getColor(n),i.color(l),t.color(l),M):l},M.showControls=function(e){return arguments.length?(c=e,M):c},M.showLegend=function(e){return arguments.length?(h=e,M):h},M.showXAxis=function(e){return arguments.length?(p=e,M):p},M.showYAxis=function(e){return arguments.length?(d=e,M):d},M.rightAlignYAxis=function(e){return arguments.length?(v=e,r.orient(e?"right":"left"),M):v},M.useInteractiveGuideline=function(e){return arguments.length?(m=e,e===!0&&(M.interactive(!1),M.useVoronoi(!1)),M):m},M.tooltip=function(e){return arguments.length?(y=e,M):y},M.tooltips=function(e){return arguments.length?(g=e,M):g},M.tooltipContent=function(e){return arguments.length?(y=e,M):y},M.state=function(e){return arguments.length?(S=e,M):S},M.defaultState=function(e){return arguments.length?(x=e,M):x},M.noData=function(e){return arguments.length?(T=e,M):T},M.transitionDuration=function(e){return arguments.length?(A=e,M):A},M.controlsData=function(e){return arguments.length?(k=e,M):k},M.controlLabels=function(e){return arguments.length?typeof e!="object"?L:(L=e,M):L},r.setTickFormat=r.tickFormat,r.tickFormat=function(e){return arguments.length?(E=e,r):E},M}}(),define("plugin/plugins/nvd3/nv.d3",function(){}),define("plugin/charts/nvd3/common/config",["plugin/charts/forms/default","plugin/plugins/nvd3/nv.d3"],function(e){return $.extend(!0,{},e,{title:"",category:"",library:"NVD3",tag:"svg",keywords:"small",query_limit:500})}),define("plugin/charts/nvd3/bar/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Regular",category:"Bar diagrams",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/bar_stacked/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Stacked",category:"Bar diagrams",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/bar_horizontal/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Horizontal",category:"Bar diagrams",settings:{x_axis_type:{init:"hide"}},columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/bar_horizontal_stacked/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Stacked horizontal",category:"Bar diagrams",settings:{x_axis_type:{init:"hide"}},columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/line_focus/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Line with focus",category:"Others",zoomable:"native",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/pie/config",["plugin/plugins/nvd3/nv.d3"],function(){return $.extend(!0,{},{title:"Pie chart",category:"Area charts",library:"NVD3",tag:"svg",keywords:"small",columns:{label:{title:"Labels",is_label:!0,is_auto:!0},y:{title:"Values",is_numeric:!0}},settings:{main_separator:{type:"separator",title:"Pie chart settings"},donut_ratio:{title:"Donut ratio",info:"Determine how large the donut hole will be.",type:"select",init:"0.5",data:[{label:"50%",value:"0.5"},{label:"25%",value:"0.25"},{label:"10%",value:"0.10"},{label:"0%",value:"0"}]},show_legend:{title:"Show legend",info:"Would you like to add a legend?",type:"radiobutton",init:"false",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]},label_separator:{type:"separator",title:"Label settings"},label_type:{title:"Donut label",info:"What would you like to show for each slice?",type:"select",init:"percent",data:[{label:"-- Nothing --",value:"hide",hide:"label_outside"},{label:"Label column",value:"key",show:"label_outside"},{label:"Value column",value:"value",show:"label_outside"},{label:"Percentage",value:"percent",show:"label_outside"}]},label_outside:{title:"Show outside",info:"Would you like to show labels outside the donut?",type:"radiobutton",init:"false",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]},use_panels:{init:"true",hide:!0}}})}),define("plugin/charts/nvd3/stackedarea_full/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Expanded",zoomable:!0,category:"Area charts",keywords:"default small",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/stackedarea_stream/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Stream",category:"Area charts",zoomable:!0,keywords:"default small",showmaxmin:!0,columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/histogram/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Histogram",category:"Data processing (requires 'charts' tool from Toolshed)",execute:"histogram",keywords:"small medium large",columns:{y:{title:"Observations",is_numeric:!0}},settings:{x_axis_label:{init:"Values"},y_axis_label:{init:"Density"},y_axis_type:{init:"f"},y_axis_precision:{init:".2"}}})}),define("plugin/charts/nvd3/line/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Line chart",category:"Others",zoomable:!0,columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/scatter/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Scatter plot",category:"Others",zoomable:!0,columns:{x:{title:"Values for x-axis",is_numeric:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/stackedarea/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Regular",zoomable:!0,category:"Area charts",keywords:"default small",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/jqplot/common/config",["plugin/charts/forms/default"],function(e){return $.extend(!0,{},e,{title:"",category:"",library:"jqPlot",tag:"div",zoomable:!0,keywords:"medium",query_limit:1e4,settings:{separator_grid:{title:"Grids",type:"separator"},x_axis_grid:{title:"Axis grid",info:"Would you like to show grid lines for the X axis?",type:"radiobutton",init:"false",data:[{label:"On",value:"true"},{label:"Off",value:"false"}]},y_axis_grid:{title:"Axis grid",info:"Would you like to show grid lines for the Y axis?",type:"radiobutton",init:"true",data:[{label:"On",value:"true"},{label:"Off",value:"false"}]}}})}),define("plugin/charts/jqplot/bar/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Regular",category:"Bar diagrams",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/jqplot/line/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Line chart",category:"Others",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/jqplot/scatter/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Scatter plot",category:"Others",columns:{x:{title:"Values for x-axis",is_numeric:!0},y:{title:"Values for y-axis",is_numeric:!0}},settings:{x_axis_grid:{init:"true"}}})}),define("plugin/charts/jqplot/boxplot/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Box plot",category:"Data processing (requires 'charts' tool from Toolshed)",library:"jqPlot",tag:"div",execute:"boxplot",keywords:"small medium large",columns:{y:{title:"Observations",is_numeric:!0}},settings:{show_legend:{init:"false"}}})}),define("plugin/charts/jqplot/histogram_discrete/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Discrete Histogram",category:"Data processing (requires 'charts' tool from Toolshed)",execute:"histogramdiscrete",keywords:"small medium large",columns:{x:{title:"Observations",is_label:!0}},settings:{x_axis_label:{init:"Breaks"},y_axis_label:{init:"Density"}}})}),define("plugin/charts/others/heatmap/config",["plugin/charts/forms/default"],function(e){return $.extend(!0,{},e,{title:"Heatmap",category:"Others",query_limit:1e3,library:"Custom",tag:"svg",keywords:"small",zoomable:!0,columns:{x:{title:"Column labels",is_label:!0,is_numeric:!0,is_unique:!0},y:{title:"Row labels",is_label:!0,is_numeric:!0,is_unique:!0},z:{title:"Observation",is_numeric:!0}},settings:{use_panels:{init:"true",hide:!0},color_set:{title:"Color scheme",info:"Select a color scheme for your heatmap",type:"select",init:"jet",data:[{label:"Cold-to-Hot",value:"hot"},{label:"Cool",value:"cool"},{label:"Copper",value:"copper"},{label:"Gray scale",value:"gray"},{label:"Jet",value:"jet"},{label:"No-Green",value:"no_green"},{label:"Ocean",value:"ocean"},{label:"Polar",value:"polar"},{label:"Red-to-Green",value:"redgreen"},{label:"Red-to-green (saturated)",value:"red2green"},{label:"Relief",value:"relief"},{label:"Seismograph",value:"seis"},{label:"Sealand",value:"sealand"},{label:"Split",value:"split"},{label:"Wysiwyg",value:"wysiwyg"}]},url_template:{title:"Url template",info:"Enter a url to link the labels with external sources. Use __LABEL__ as placeholder.",type:"text",init:"",placeholder:"http://someurl.com?id=__LABEL__"}}})}),define("plugin/charts/others/heatmap_cluster/config",["plugin/charts/others/heatmap/config"],function(e){return $.extend(!0,{},e,{title:"Clustered Heatmap",category:"Data processing (requires 'charts' tool from Toolshed)",execute:"heatmap",keywords:"small medium large"})}),define("plugin/charts/types",["plugin/charts/nvd3/bar/config","plugin/charts/nvd3/bar_stacked/config","plugin/charts/nvd3/bar_horizontal/config","plugin/charts/nvd3/bar_horizontal_stacked/config","plugin/charts/nvd3/line_focus/config","plugin/charts/nvd3/pie/config","plugin/charts/nvd3/stackedarea_full/config","plugin/charts/nvd3/stackedarea_stream/config","plugin/charts/nvd3/histogram/config","plugin/charts/nvd3/line/config","plugin/charts/nvd3/scatter/config","plugin/charts/nvd3/stackedarea/config","plugin/charts/jqplot/bar/config","plugin/charts/jqplot/line/config","plugin/charts/jqplot/scatter/config","plugin/charts/jqplot/boxplot/config","plugin/charts/jqplot/histogram_discrete/config","plugin/charts/others/heatmap/config","plugin/charts/others/heatmap_cluster/config"],function(e,t,n,r,i,s,o,u,a,f,l,c,h,p,d,v,m,g,y){return Backbone.Model.extend({defaults:{nvd3_bar:e,nvd3_bar_stacked:t,nvd3_bar_horizontal:n,nvd3_bar_horizontal_stacked:r,nvd3_line_focus:i,nvd3_stackedarea:c,nvd3_stackedarea_full:o,nvd3_stackedarea_stream:u,nvd3_pie:s,nvd3_line:f,nvd3_scatter:l,nvd3_histogram:a,jqplot_bar:h,jqplot_histogram_discrete:m,jqplot_line:p,jqplot_scatter:d,jqplot_boxplot:v,others_heatmap:g,others_heatmap_cluster:y}})}),define("plugin/app",["mvc/ui/ui-modal","mvc/ui/ui-portlet","plugin/library/ui","utils/utils","plugin/library/jobs","plugin/library/datasets","plugin/library/storage","plugin/library/deferred","plugin/views/viewer","plugin/views/editor","plugin/models/config","plugin/models/chart","plugin/charts/types"],function(e,t,n,r,i,s,o,u,a,f,l,c,h){return Backbone.View.extend({initialize:function(t){this.options=t,Galaxy&&Galaxy.modal?this.modal=Galaxy.modal:this.modal=new e.View,this.config=new l,this.types=new h,this.chart=new c,this.jobs=new i(this),this.datasets=new s(this),this.storage=new o(this),this.deferred=new u,this.viewer_view=new a(this),this.editor_view=new f(this),this.$el.append(this.viewer_view.$el),this.$el.append(this.editor_view.$el);if(!this.storage.load())this.go("editor");else{this.go("viewer");var n=this;this.deferred.execute(function(){n.chart.trigger("redraw")})}},go:function(e){$(".tooltip").hide();switch(e){case"editor":this.editor_view.show(),this.viewer_view.hide();break;case"viewer":this.editor_view.hide(),this.viewer_view.show()}},chartPath:function(e){var t=e.split(/_(.+)/);return t.length>=2?t[0]+"/"+t[1]:(console.debug("FAILED App:chartPath() - Invalid format: "+e),undefined)}})}); \ No newline at end of file diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf config/plugins/visualizations/charts/static/charts/jqplot/common/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/jqplot/common/wrapper.js +++ b/config/plugins/visualizations/charts/static/charts/jqplot/common/wrapper.js @@ -1,9 +1,10 @@ // dependencies define(['plugin/charts/jqplot/common/plot-config', 'plugin/charts/tools'], function(configmaker, Tools) { -// widget -return Backbone.View.extend( -{ +/** + * This is the common wrapper for jqplot based visualizations. + */ +return Backbone.View.extend({ // initialize initialize: function(app, options) { // get parameters diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf config/plugins/visualizations/charts/static/charts/nvd3/common/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/nvd3/common/wrapper.js +++ b/config/plugins/visualizations/charts/static/charts/nvd3/common/wrapper.js @@ -1,9 +1,10 @@ // dependencies define(['plugin/charts/tools'], function(Tools) { -// widget -return Backbone.View.extend( -{ +/** + * This is the common wrapper for nvd3 based visualizations. + */ +return Backbone.View.extend({ // initialize initialize: function(app, options) { // get parameters @@ -97,6 +98,7 @@ } }); + // return return true; }, diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf config/plugins/visualizations/charts/static/charts/nvd3/pie/wrapper.js --- a/config/plugins/visualizations/charts/static/charts/nvd3/pie/wrapper.js +++ b/config/plugins/visualizations/charts/static/charts/nvd3/pie/wrapper.js @@ -28,7 +28,7 @@ chart.state('ok', 'Pie chart has been drawn.'); // unregister process - chart.deferred.done(process_id); + app.deferred.done(process_id); } // request data diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf config/plugins/visualizations/charts/static/charts/tools.js --- a/config/plugins/visualizations/charts/static/charts/tools.js +++ b/config/plugins/visualizations/charts/static/charts/tools.js @@ -2,8 +2,7 @@ define(['utils/utils'], function(Utils) { // render -function panelHelper (app, options) -{ +function panelHelper (app, options) { // link this var self = this; @@ -42,7 +41,7 @@ } // unregister process - chart.deferred.done(process_id); + app.deferred.done(process_id); } catch (err) { // log console.debug('FAILED: Tools::panelHelper() - ' + err); @@ -51,7 +50,7 @@ chart.state('failed', err); // unregister process - chart.deferred.done(process_id); + app.deferred.done(process_id); } }; diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf config/plugins/visualizations/charts/static/library/datasets.js --- a/config/plugins/visualizations/charts/static/library/datasets.js +++ b/config/plugins/visualizations/charts/static/library/datasets.js @@ -1,7 +1,9 @@ // dependencies define(['utils/utils'], function(Utils) { -// widget +/** + * This class handles, formats and caches datasets. + */ return Backbone.Collection.extend( { // list of datasets @@ -11,8 +13,7 @@ cache: {}, // initialize - initialize: function(app, options) - { + initialize: function(app, options){ // link app this.app = app; diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf config/plugins/visualizations/charts/static/library/deferred.js --- a/config/plugins/visualizations/charts/static/library/deferred.js +++ b/config/plugins/visualizations/charts/static/library/deferred.js @@ -1,9 +1,10 @@ // dependencies define(['utils/utils'], function(Utils) { -// deferred process handler -return Backbone.Model.extend( -{ +/** + * This class handles deferred processes. It makes it easy to handle multiple and overlapping sets of deferred processes. + */ +return Backbone.Model.extend({ // queue queue: [], @@ -14,8 +15,7 @@ counter: 0, // initialize - initialize: function() - { + initialize: function(){ // loop through queue and check states this.on('refresh', function() { for (var index in this.queue) { diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf config/plugins/visualizations/charts/static/library/jobs.js --- a/config/plugins/visualizations/charts/static/library/jobs.js +++ b/config/plugins/visualizations/charts/static/library/jobs.js @@ -1,9 +1,10 @@ // dependencies define(['utils/utils'], function(Utils) { -// widget -return Backbone.Model.extend( -{ +/** + * This class handles job submissions to the charts tool. + */ +return Backbone.Model.extend({ // initialize initialize: function(app, options) { // link app diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf config/plugins/visualizations/charts/static/library/screenshot.js --- a/config/plugins/visualizations/charts/static/library/screenshot.js +++ b/config/plugins/visualizations/charts/static/library/screenshot.js @@ -1,4 +1,6 @@ -// dependencies +/** + * This class enables users to export/download a chart as PNG, SVG or PDF. + */ define(["libs/underscore"], function(_) { // // PNG export diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf config/plugins/visualizations/charts/static/library/storage.js --- a/config/plugins/visualizations/charts/static/library/storage.js +++ b/config/plugins/visualizations/charts/static/library/storage.js @@ -1,9 +1,10 @@ // dependencies -define(['utils/utils', 'plugin/models/chart', 'plugin/models/group'], function(Utils, Chart, Group) { +define(['utils/utils', 'plugin/models/chart', 'plugin/models/group', 'mvc/visualization/visualization-model'], function(Utils, Chart, Group) { -// collection -return Backbone.Model.extend( -{ +/** + * This class saves and loads a chart through the api. + */ +return Backbone.Model.extend({ // viz model vis: null, @@ -44,7 +45,6 @@ // pack and save nested chart model save: function() { - // link chart var chart = this.app.chart; diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf config/plugins/visualizations/charts/static/library/ui-button-menu.js --- a/config/plugins/visualizations/charts/static/library/ui-button-menu.js +++ b/config/plugins/visualizations/charts/static/library/ui-button-menu.js @@ -1,8 +1,9 @@ // dependencies -define(['utils/utils'], - function(Utils) { +define(['utils/utils'], function(Utils) { -// return button menu +/** + * This class creates a button with dropdown menu. It extends the functionality of the Ui.ButtonIcon class. + */ return Backbone.View.extend({ // main options optionsDefault: { diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf config/plugins/visualizations/charts/static/library/ui-select.js --- a/config/plugins/visualizations/charts/static/library/ui-select.js +++ b/config/plugins/visualizations/charts/static/library/ui-select.js @@ -1,9 +1,10 @@ // dependencies define(['utils/utils'], function(Utils) { -// plugin -var View = Backbone.View.extend( -{ +/** + * This class creates/wraps a default html select field as backbone class. + */ +var View = Backbone.View.extend({ // options optionsDefault : { id : '', diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf config/plugins/visualizations/charts/static/library/ui-table-form.js --- a/config/plugins/visualizations/charts/static/library/ui-table-form.js +++ b/config/plugins/visualizations/charts/static/library/ui-table-form.js @@ -2,9 +2,10 @@ define(['plugin/library/ui-table', 'plugin/library/ui', 'utils/utils'], function(Table, Ui, Utils) { -// widget -var View = Backbone.View.extend( -{ +/** + * This class takes a dictionary as input an creates an input form. It uses the Ui.Table element to organize and format the form elements. + */ +var View = Backbone.View.extend({ // options optionsDefault: { title : '', diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf config/plugins/visualizations/charts/static/library/ui-table.js --- a/config/plugins/visualizations/charts/static/library/ui-table.js +++ b/config/plugins/visualizations/charts/static/library/ui-table.js @@ -1,7 +1,10 @@ +// dependencies define(['utils/utils'], function(Utils) { -var View = Backbone.View.extend( -{ +/** + * This class creates a ui table element. + */ +var View = Backbone.View.extend({ // current row row: null, diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf config/plugins/visualizations/charts/static/library/ui.js --- a/config/plugins/visualizations/charts/static/library/ui.js +++ b/config/plugins/visualizations/charts/static/library/ui.js @@ -2,9 +2,12 @@ define(['utils/utils', 'plugin/library/ui-select', 'plugin/library/ui-button-menu', 'mvc/ui/ui-modal'], function(Utils, Select, ButtonMenu, Modal) { +/** + * This class contains backbone wrappers for basic ui elements such as Images, Labels, Buttons, Input fields etc. + */ + // plugin -var Image = Backbone.View.extend( -{ +var Image = Backbone.View.extend({ // options optionsDefault: { url : '', @@ -27,8 +30,7 @@ }); // plugin -var Label = Backbone.View.extend( -{ +var Label = Backbone.View.extend({ // options optionsDefault: { title : '', @@ -61,8 +63,7 @@ }); // plugin -var Icon = Backbone.View.extend( -{ +var Icon = Backbone.View.extend({ // options optionsDefault: { float : 'right', @@ -95,8 +96,7 @@ }); // plugin -var Button = Backbone.View.extend( -{ +var Button = Backbone.View.extend({ // options optionsDefault: { id : null, @@ -134,8 +134,7 @@ }); // plugin -var ButtonIcon = Backbone.View.extend( -{ +var ButtonIcon = Backbone.View.extend({ // options optionsDefault: { id : null, @@ -188,8 +187,7 @@ }); // plugin -var Anchor = Backbone.View.extend( -{ +var Anchor = Backbone.View.extend({ // options optionsDefault: { title : '', @@ -215,8 +213,7 @@ }); // plugin -var Message = Backbone.View.extend( -{ +var Message = Backbone.View.extend({ // options optionsDefault: { message : '', @@ -268,8 +265,7 @@ }); // plugin -var Searchbox = Backbone.View.extend( -{ +var Searchbox = Backbone.View.extend({ // options optionsDefault: { onclick : null, @@ -308,8 +304,7 @@ }); // plugin -var Input = Backbone.View.extend( -{ +var Input = Backbone.View.extend({ // options optionsDefault: { value : '', @@ -362,8 +357,7 @@ }); // plugin -var Textarea = Backbone.View.extend( -{ +var Textarea = Backbone.View.extend({ // options optionsDefault: { value : '', @@ -416,8 +410,7 @@ }); // plugin -var RadioButton = Backbone.View.extend( -{ +var RadioButton = Backbone.View.extend({ // options optionsDefault: { value : '', @@ -503,19 +496,19 @@ // return return { - Label : Label, - Button : Button, - Icon : Icon, - ButtonIcon : ButtonIcon, - Input : Input, - Anchor : Anchor, - Message : Message, - Searchbox : Searchbox, - Select : Select, - ButtonMenu : ButtonMenu, - Modal: Modal, - Textarea: Textarea, - Image: Image, - RadioButton: RadioButton + Anchor : Anchor, + Button : Button, + ButtonIcon : ButtonIcon, + ButtonMenu : ButtonMenu, + Icon : Icon, + Image : Image, + Input : Input, + Label : Label, + Message : Message, + Modal : Modal, + RadioButton : RadioButton, + Searchbox : Searchbox, + Select : Select, + Textarea : Textarea } }); diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf config/plugins/visualizations/charts/static/models/chart.js --- a/config/plugins/visualizations/charts/static/models/chart.js +++ b/config/plugins/visualizations/charts/static/models/chart.js @@ -1,11 +1,8 @@ // dependencies -define(['plugin/models/groups', 'plugin/library/deferred', 'mvc/visualization/visualization-model'], - function(Groups, Deferred) { - +define(['plugin/models/groups'], function(Groups) { // model -return Backbone.Model.extend( -{ +return Backbone.Model.extend({ // defaults defaults : { id : null, @@ -23,7 +20,6 @@ initialize: function(options) { this.groups = new Groups(); this.settings = new Backbone.Model(); - this.deferred = new Deferred(); }, // reset diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf config/plugins/visualizations/charts/static/models/config.js --- a/config/plugins/visualizations/charts/static/models/config.js +++ b/config/plugins/visualizations/charts/static/models/config.js @@ -2,8 +2,7 @@ define([], function() { // model -return Backbone.Model.extend( -{ +return Backbone.Model.extend({ // options defaults : { query_limit : 500, diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf config/plugins/visualizations/charts/static/models/group.js --- a/config/plugins/visualizations/charts/static/models/group.js +++ b/config/plugins/visualizations/charts/static/models/group.js @@ -2,8 +2,7 @@ define([], function() { // model -return Backbone.Model.extend( -{ +return Backbone.Model.extend({ // options defaults : { key : 'Data label', @@ -11,8 +10,7 @@ }, // reset - reset: function() - { + reset: function(){ this.clear({silent: true}).set(this.defaults); this.trigger('reset', this); } diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf config/plugins/visualizations/charts/static/models/groups.js --- a/config/plugins/visualizations/charts/static/models/groups.js +++ b/config/plugins/visualizations/charts/static/models/groups.js @@ -2,8 +2,7 @@ define(['plugin/models/group'], function(Group) { // collection -return Backbone.Collection.extend( -{ +return Backbone.Collection.extend({ model: Group }); diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf config/plugins/visualizations/charts/static/views/editor.js --- a/config/plugins/visualizations/charts/static/views/editor.js +++ b/config/plugins/visualizations/charts/static/views/editor.js @@ -4,18 +4,13 @@ 'plugin/views/group', 'plugin/views/settings', 'plugin/views/types'], function(Tabs, Ui, Portlet, Utils, Chart, Group, GroupView, SettingsView, TypesView) { -// widget -return Backbone.View.extend( -{ - // defaults options - optionsDefault: { - header : true, - content : 'No content available.' - }, - +/** + * The charts editor holds the tabs for selecting chart types, chart configuration + * and data group selections. + */ +return Backbone.View.extend({ // initialize - initialize: function(app, options) - { + initialize: function(app, options){ // link this var self = this; @@ -25,9 +20,6 @@ // get current chart object this.chart = this.app.chart; - // configure options - this.options = Utils.merge(options, this.optionsDefault); - // message element this.message = new Ui.Message(); @@ -49,7 +41,7 @@ tooltip : 'Return to Viewer', title : 'Cancel', onclick : function() { - // show viewport + // show viewer/viewport self.app.go('viewer'); // reset chart @@ -200,7 +192,7 @@ this.title.value(title); }, - // update + // refresh group _refreshGroupKey: function() { var self = this; var counter = 0; @@ -213,7 +205,7 @@ }); }, - // new group + // add group model _addGroupModel: function() { var group = new Group({ id : Utils.uuid() @@ -222,7 +214,7 @@ return group; }, - // add group + // add group tab _addGroup: function(group) { // link this var self = this; @@ -319,7 +311,7 @@ // wait until chart is ready var self = this; - this.chart.deferred.execute(function() { + this.app.deferred.execute(function() { // save self.app.storage.save(); diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf config/plugins/visualizations/charts/static/views/group.js --- a/config/plugins/visualizations/charts/static/views/group.js +++ b/config/plugins/visualizations/charts/static/views/group.js @@ -2,9 +2,10 @@ define(['plugin/library/ui-table', 'plugin/library/ui', 'utils/utils'], function(Table, Ui, Utils) { -// widget -return Backbone.View.extend( -{ +/** + * This class renders the data group selection fields. + */ +return Backbone.View.extend({ // initialize initialize: function(app, options) { // link app @@ -59,7 +60,7 @@ this._refreshGroup(); }, - // update dataset + // update group selection table _refreshTable: function() { // identify datasets var dataset_id = this.chart.get('dataset_id'); @@ -116,7 +117,7 @@ this.chart.state('wait', 'Loading metadata...'); // register process - var process_id = this.chart.deferred.register(); + var process_id = this.app.deferred.register(); // request dictionary var request_dictionary = { @@ -131,7 +132,7 @@ self.chart.state('ok', 'Metadata initialized...'); // unregister - self.chart.deferred.done(process_id); + self.app.deferred.done(process_id); } }; diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf config/plugins/visualizations/charts/static/views/settings.js --- a/config/plugins/visualizations/charts/static/views/settings.js +++ b/config/plugins/visualizations/charts/static/views/settings.js @@ -2,9 +2,10 @@ define(['plugin/library/ui', 'plugin/library/ui-table-form', 'utils/utils'], function(Ui, TableForm, Utils) { -// widget -return Backbone.View.extend( -{ +/** + * This class renders the chart configuration form. + */ +return Backbone.View.extend({ // initialize initialize: function(app, options) { // link app @@ -36,7 +37,7 @@ // get settings var chart_definition = this.chart.definition; - // check if dataset is available + // check if chart definition is available if (!chart_definition) { return; } diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf config/plugins/visualizations/charts/static/views/types.js --- a/config/plugins/visualizations/charts/static/views/types.js +++ b/config/plugins/visualizations/charts/static/views/types.js @@ -1,7 +1,10 @@ +// dependencies define(['utils/utils', 'plugin/library/ui'], function(Utils, Ui) { -return Backbone.View.extend( -{ +/** + * This class renders the chart type selection grid. + */ +return Backbone.View.extend({ // defaults options optionsDefault: { onchange : null, @@ -16,7 +19,6 @@ // initialize initialize : function(app, options) { - // link this var self = this; diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf config/plugins/visualizations/charts/static/views/viewer.js --- a/config/plugins/visualizations/charts/static/views/viewer.js +++ b/config/plugins/visualizations/charts/static/views/viewer.js @@ -1,14 +1,14 @@ // dependencies define(['utils/utils', 'plugin/library/ui', 'mvc/ui/ui-portlet', - 'plugin/models/group', 'plugin/views/viewport', 'plugin/library/screenshot'], - function(Utils, Ui, Portlet, Group, ViewportView, Screenshot) { + 'plugin/views/viewport', 'plugin/library/screenshot'], + function(Utils, Ui, Portlet, ViewportView, Screenshot) { -// widget -return Backbone.View.extend( -{ +/** + * This class renders the chart viewer which encapsulates the chart viewport. + */ +return Backbone.View.extend({ // initialize - initialize: function(app, options) - { + initialize: function(app, options){ // link app this.app = app; @@ -152,7 +152,7 @@ // wait for chart to be ready _wait: function(chart, callback) { // get chart - if (chart.deferred.ready()) { + if (this.app.deferred.ready()) { callback(); } else { this.message.update({message: 'Your chart is currently being processed. Please wait and try again.'}); diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf config/plugins/visualizations/charts/static/views/viewport.js --- a/config/plugins/visualizations/charts/static/views/viewport.js +++ b/config/plugins/visualizations/charts/static/views/viewport.js @@ -2,7 +2,11 @@ define(['mvc/ui/ui-portlet', 'plugin/library/ui', 'utils/utils'], function(Portlet, Ui, Utils) { -// widget +/** + * The viewport creates and manages the dom elements used by the visualization plugins to draw the chart. + * Additionally, this class creates default request strings and request dictionaries parsed to the visualization plugins. + * This is the last class of the charts core classes before handing control over to the visualization plugins. + */ return Backbone.View.extend({ // list of canvas elements @@ -26,7 +30,7 @@ // use full screen for viewer this._fullscreen(this.$el, 100); - // create canvas element + // create container element this._createContainer('div'); // events @@ -126,7 +130,7 @@ var self = this; // register process - var process_id = chart.deferred.register(); + var process_id = this.app.deferred.register(); // identify chart type var chart_type = chart.get('type'); @@ -171,7 +175,7 @@ }); }, function() { - chart.deferred.done(process_id); + this.app.deferred.done(process_id); } ); } else { diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf eggs.ini --- a/eggs.ini +++ b/eggs.ini @@ -38,7 +38,7 @@ boto = 2.27.0 decorator = 3.1.2 docutils = 0.7 -drmaa = 0.6 +drmaa = 0.7.6 elementtree = 1.2.6_20050316 Fabric = 1.7.0 GeneTrack = 2.0.0_beta_1 diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf job_conf.xml.sample_advanced --- a/job_conf.xml.sample_advanced +++ b/job_conf.xml.sample_advanced @@ -102,6 +102,12 @@  + <param id="embed_metadata_in_job">True</param> + <job_metrics /> +  +  diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf lib/galaxy/app.py --- a/lib/galaxy/app.py +++ b/lib/galaxy/app.py @@ -12,7 +12,6 @@ from galaxy.visualization.data_providers.registry import DataProviderRegistry from galaxy.visualization.registry import VisualizationsRegistry from galaxy.tools.imp_exp import load_history_imp_exp_tools -from galaxy.tools.genome_index import load_genome_index_tools from galaxy.sample_tracking import external_service_types from galaxy.openid.providers import OpenIDProviders from galaxy.tools.data_manager.manager import DataManagers @@ -93,8 +92,6 @@ self.datatypes_registry.load_external_metadata_tool( self.toolbox ) # Load history import/export tools. load_history_imp_exp_tools( self.toolbox ) - # Load genome indexer tool. - load_genome_index_tools( self.toolbox ) # visualizations registry: associates resources with visualizations, controls how to render self.visualizations_registry = None if self.config.visualization_plugins_directory: diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf lib/galaxy/datatypes/metadata.py --- a/lib/galaxy/datatypes/metadata.py +++ b/lib/galaxy/datatypes/metadata.py @@ -126,10 +126,21 @@ rval[key] = self.spec[key].param.make_copy( value, target_context=self, source_context=to_copy ) return rval - def from_JSON_dict( self, filename, path_rewriter=None ): + def from_JSON_dict( self, filename=None, path_rewriter=None, json_dict=None ): dataset = self.parent - log.debug( 'loading metadata from file for: %s %s' % ( dataset.__class__.__name__, dataset.id ) ) - JSONified_dict = json.load( open( filename ) ) + if filename is not None: + log.debug( 'loading metadata from file for: %s %s' % ( dataset.__class__.__name__, dataset.id ) ) + JSONified_dict = json.load( open( filename ) ) + elif json_dict is not None: + log.debug( 'loading metadata from dict for: %s %s' % ( dataset.__class__.__name__, dataset.id ) ) + if isinstance( json_dict, basestring ): + JSONified_dict = json.loads( json_dict ) + elif isinstance( json_dict, dict ): + JSONified_dict = json_dict + else: + raise ValueError( "json_dict must be either a dictionary or a string, got %s." % ( type( json_dict ) ) ) + else: + raise ValueError( "You must provide either a filename or a json_dict" ) for name, spec in self.spec.items(): if name in JSONified_dict: from_ext_kwds = {} @@ -143,13 +154,15 @@ #metadata associated with our dataset, we'll delete it from our dataset's metadata dict del dataset._metadata[ name ] - def to_JSON_dict( self, filename ): + def to_JSON_dict( self, filename=None ): #galaxy.model.customtypes.json_encoder.encode() meta_dict = {} dataset_meta_dict = self.parent._metadata for name, spec in self.spec.items(): if name in dataset_meta_dict: meta_dict[ name ] = spec.param.to_external_value( dataset_meta_dict[ name ] ) + if filename is None: + return json.dumps( meta_dict ) json.dump( meta_dict, open( filename, 'wb+' ) ) def __getstate__( self ): diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf lib/galaxy/jobs/__init__.py --- a/lib/galaxy/jobs/__init__.py +++ b/lib/galaxy/jobs/__init__.py @@ -1181,17 +1181,21 @@ out_data = dict( [ ( da.name, da.dataset ) for da in job.output_datasets ] ) inp_data.update( [ ( da.name, da.dataset ) for da in job.input_library_datasets ] ) out_data.update( [ ( da.name, da.dataset ) for da in job.output_library_datasets ] ) + input_ext = 'data' + for _, data in inp_data.items(): + # For loop odd, but sort simulating behavior in galaxy.tools.actions + if not data: + continue + input_ext = data.ext + param_dict = dict( [ ( p.name, p.value ) for p in job.parameters ] ) # why not re-use self.param_dict here? ##dunno...probably should, this causes tools.parameters.basic.UnvalidatedValue to be used in following methods instead of validated and transformed values during i.e. running workflows param_dict = self.tool.params_from_strings( param_dict, self.app ) # Check for and move associated_files self.tool.collect_associated_files(out_data, self.working_directory) - gitd = self.sa_session.query( model.GenomeIndexToolData ).filter_by( job=job ).first() - if gitd: - self.tool.collect_associated_files({'': gitd}, self.working_directory) # Create generated output children and primary datasets and add to param_dict collected_datasets = { 'children': self.tool.collect_child_datasets(out_data, self.working_directory), - 'primary': self.tool.collect_primary_datasets(out_data, self.working_directory) + 'primary': self.tool.collect_primary_datasets(out_data, self.working_directory, input_ext) } param_dict.update({'__collected_datasets__': collected_datasets}) # Certain tools require tasks to be completed after job execution @@ -1241,7 +1245,6 @@ self.external_output_metadata.cleanup_external_metadata( self.sa_session ) galaxy.tools.imp_exp.JobExportHistoryArchiveWrapper( self.job_id ).cleanup_after_job( self.sa_session ) galaxy.tools.imp_exp.JobImportHistoryArchiveWrapper( self.app, self.job_id ).cleanup_after_job() - galaxy.tools.genome_index.GenomeIndexToolWrapper( self.job_id ).postprocessing( self.sa_session, self.app ) if delete_files: self.app.object_store.delete(self.get_job(), base_dir='job_work', entire_dir=True, dir_only=True, extra_dir=str(self.job_id)) except: @@ -1344,10 +1347,8 @@ dataset_path_rewriter = self.dataset_path_rewriter job = self.get_job() - # Job output datasets are combination of history, library, jeha and gitd datasets. + # Job output datasets are combination of history, library, and jeha datasets. special = self.sa_session.query( model.JobExportHistoryArchive ).filter_by( job=job ).first() - if not special: - special = self.sa_session.query( model.GenomeIndexToolData ).filter_by( job=job ).first() false_path = None results = [] diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf lib/galaxy/jobs/deferred/genome_index.py --- a/lib/galaxy/jobs/deferred/genome_index.py +++ /dev/null @@ -1,43 +0,0 @@ -""" -Module for managing genome transfer jobs. -""" -from __future__ import with_statement - -import logging, shutil, gzip, bz2, zipfile, tempfile, tarfile, sys, os - -from galaxy import eggs -from sqlalchemy import and_ -from data_transfer import * - -log = logging.getLogger( __name__ ) - -__all__ = [ 'GenomeIndexPlugin' ] - -class GenomeIndexPlugin( DataTransfer ): - - def __init__( self, app ): - super( GenomeIndexPlugin, self ).__init__( app ) - self.app = app - self.tool = app.toolbox.tools_by_id['__GENOME_INDEX__'] - self.sa_session = app.model.context.current - - def create_job( self, trans, path, indexes, dbkey, intname ): - params = dict( user=trans.user.id, path=path, indexes=indexes, dbkey=dbkey, intname=intname ) - deferred = trans.app.model.DeferredJob( state = self.app.model.DeferredJob.states.NEW, plugin = 'GenomeIndexPlugin', params = params ) - self.sa_session.add( deferred ) - self.sa_session.flush() - log.debug( 'Job created, id %d' % deferred.id ) - return deferred.id - - def check_job( self, job ): - log.debug( 'Job check' ) - return 'ready' - - def run_job( self, job ): - incoming = dict( path=os.path.abspath( job.params[ 'path' ] ), indexer=job.params[ 'indexes' ][0], user=job.params[ 'user' ] ) - indexjob = self.tool.execute( self, set_output_hid=False, history=None, incoming=incoming, transfer=None, deferred=job ) - job.params[ 'indexjob' ] = indexjob[0].id - job.state = self.app.model.DeferredJob.states.RUNNING - self.sa_session.add( job ) - self.sa_session.flush() - return self.app.model.DeferredJob.states.RUNNING diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf lib/galaxy/jobs/deferred/genome_transfer.py --- a/lib/galaxy/jobs/deferred/genome_transfer.py +++ /dev/null @@ -1,250 +0,0 @@ -""" -Module for managing genome transfer jobs. -""" -from __future__ import with_statement - -import logging, shutil, gzip, bz2, zipfile, tempfile, tarfile, sys - -from galaxy import eggs -from sqlalchemy import and_ - -from galaxy.util.odict import odict -from galaxy.workflow.modules import module_factory -from galaxy.jobs.actions.post import ActionBox - -from galaxy.tools.parameters import visit_input_values -from galaxy.tools.parameters.basic import DataToolParameter -from galaxy.tools.data import ToolDataTableManager - -from galaxy.datatypes.checkers import * -from galaxy.datatypes.sequence import Fasta -from data_transfer import * - -log = logging.getLogger( __name__ ) - -__all__ = [ 'GenomeTransferPlugin' ] - -class GenomeTransferPlugin( DataTransfer ): - - locations = {} - - def __init__( self, app ): - super( GenomeTransferPlugin, self ).__init__( app ) - self.app = app - self.tool = app.toolbox.tools_by_id['__GENOME_INDEX__'] - self.sa_session = app.model.context.current - tdtman = ToolDataTableManager( app.config.tool_data_path ) - xmltree = tdtman.load_from_config_file( app.config.tool_data_table_config_path, app.config.tool_data_path ) - for node in xmltree: - table = node.get('name') - location = node.findall('file')[0].get('path') - self.locations[table] = location - - def create_job( self, trans, url, dbkey, intname, indexes ): - job = trans.app.transfer_manager.new( protocol='http', url=url ) - params = dict( user=trans.user.id, transfer_job_id=job.id, protocol='http', type='init_transfer', url=url, dbkey=dbkey, indexes=indexes, intname=intname, liftover=None ) - deferred = trans.app.model.DeferredJob( state = self.app.model.DeferredJob.states.NEW, plugin = 'GenomeTransferPlugin', params = params ) - self.sa_session.add( deferred ) - self.sa_session.flush() - return deferred.id - - def check_job( self, job ): - if job.params['type'] == 'init_transfer': - if not hasattr(job, 'transfer_job'): - job.transfer_job = self.sa_session.query( self.app.model.TransferJob ).get( int( job.params[ 'transfer_job_id' ] ) ) - else: - self.sa_session.refresh( job.transfer_job ) - if job.transfer_job.state == 'done': - transfer = job.transfer_job - transfer.state = 'downloaded' - job.params['type'] = 'extract_transfer' - self.sa_session.add( job ) - self.sa_session.add( transfer ) - self.sa_session.flush() - return self.job_states.READY - elif job.transfer_job.state == 'running': - return self.job_states.WAIT - elif job.transfer_job.state == 'new': - assert job.params[ 'protocol' ] in [ 'http', 'ftp', 'https' ], 'Unknown protocol %s' % job.params[ 'protocol' ] - self.app.transfer_manager.run( job.transfer_job ) - self.sa_session.add( job.transfer_job ) - self.sa_session.flush() - return self.job_states.WAIT - else: - log.error( "An error occurred while downloading from %s" % job.params[ 'url' ] ) - return self.job_states.INVALID - elif job.params[ 'type' ] == 'extract_transfer': - return self.job_states.READY - - def get_job_status( self, jobid ): - job = self.sa_session.query( self.app.model.DeferredJob ).get( int( jobid ) ) - if 'transfer_job_id' in job.params: - if not hasattr( job, 'transfer_job' ): - job.transfer_job = self.sa_session.query( self.app.model.TransferJob ).get( int( job.params[ 'transfer_job_id' ] ) ) - else: - self.sa_session.refresh( job.transfer_job ) - return job - - def run_job( self, job ): - params = job.params - dbkey = params[ 'dbkey' ] - if not hasattr( job, 'transfer_job' ): - job.transfer_job = self.sa_session.query( self.app.model.TransferJob ).get( int( job.params[ 'transfer_job_id' ] ) ) - else: - self.sa_session.refresh( job.transfer_job ) - transfer = job.transfer_job - if params[ 'type' ] == 'extract_transfer': - CHUNK_SIZE = 2**20 - destpath = os.path.join( self.app.config.get( 'genome_data_path', 'tool-data/genome' ), job.params[ 'dbkey' ], 'seq' ) - destfile = '%s.fa' % job.params[ 'dbkey' ] - destfilepath = os.path.join( destpath, destfile ) - tmpprefix = '%s_%s_download_unzip_' % ( job.params['dbkey'], job.params[ 'transfer_job_id' ] ) - tmppath = os.path.dirname( os.path.abspath( transfer.path ) ) - if not os.path.exists( destpath ): - os.makedirs( destpath ) - protocol = job.params[ 'protocol' ] - data_type = self._check_compress( transfer.path ) - if data_type is None: - sniffer = Fasta() - if sniffer.sniff( transfer.path ): - data_type = 'fasta' - fd, uncompressed = tempfile.mkstemp( prefix=tmpprefix, dir=tmppath, text=False ) - if data_type in [ 'tar.gzip', 'tar.bzip' ]: - fp = open( transfer.path, 'r' ) - tar = tarfile.open( mode = 'r:*', bufsize = CHUNK_SIZE, fileobj = fp ) - files = tar.getmembers() - for filename in files: - z = tar.extractfile(filename) - while 1: - try: - chunk = z.read( CHUNK_SIZE ) - except IOError: - os.close( fd ) - log.error( 'Problem decompressing compressed data' ) - exit() - if not chunk: - break - os.write( fd, chunk ) - os.write( fd, '\n' ) - os.close( fd ) - tar.close() - fp.close() - elif data_type == 'gzip': - compressed = gzip.open( transfer.path, mode = 'rb' ) - while 1: - try: - chunk = compressed.read( CHUNK_SIZE ) - except IOError: - compressed.close() - log.error( 'Problem decompressing compressed data' ) - exit() - if not chunk: - break - os.write( fd, chunk ) - os.close( fd ) - compressed.close() - elif data_type == 'bzip': - compressed = bz2.BZ2File( transfer.path, mode = 'r' ) - while 1: - try: - chunk = compressed.read( CHUNK_SIZE ) - except IOError: - compressed.close() - log.error( 'Problem decompressing compressed data' ) - exit() - if not chunk: - break - os.write( fd, chunk ) - os.close( fd ) - compressed.close() - elif data_type == 'zip': - uncompressed_name = None - unzipped = False - z = zipfile.ZipFile( transfer.path ) - z.debug = 3 - for name in z.namelist(): - if name.endswith('/'): - continue - zipped_file = z.open( name ) - while 1: - try: - chunk = zipped_file.read( CHUNK_SIZE ) - except IOError: - os.close( fd ) - log.error( 'Problem decompressing zipped data' ) - return self.app.model.DeferredJob.states.INVALID - if not chunk: - break - os.write( fd, chunk ) - zipped_file.close() - os.close( fd ) - z.close() - elif data_type == 'fasta': - uncompressed = transfer.path - else: - job.state = self.app.model.DeferredJob.states.INVALID - log.error( "Unrecognized compression format for file %s." % transfer.path ) - self.sa_session.add( job ) - self.sa_session.flush() - return - shutil.move( uncompressed, destfilepath ) - if os.path.exists( transfer.path ): - os.remove( transfer.path ) - os.chmod( destfilepath, 0644 ) - fastaline = '\t'.join( [ dbkey, dbkey, params[ 'intname' ], os.path.abspath( destfilepath ) ] ) - self._add_line( 'all_fasta', fastaline ) - if params[ 'indexes' ] is not None: - job.state = self.app.model.DeferredJob.states.WAITING - job.params[ 'indexjobs' ] = [] - else: - job.state = self.app.model.DeferredJob.states.OK - job.params[ 'type' ] = 'finish_transfer' - transfer.path = os.path.abspath(destfilepath) - transfer.state = 'done' - self.sa_session.add( job ) - self.sa_session.add( transfer ) - if transfer.state == 'done': - if params[ 'indexes' ] is not None: - for indexer in params[ 'indexes' ]: - incoming = dict(indexer=indexer, dbkey=params[ 'dbkey' ], intname=params[ 'intname' ], path=transfer.path, user=params['user'] ) - deferred = self.tool.execute( self, set_output_hid=False, history=None, incoming=incoming, transfer=transfer, deferred=job ) - job.params[ 'indexjobs' ].append( deferred[0].id ) - else: - job.state = self.app.model.DeferredJob.states.OK - self.sa_session.add( job ) - self.sa_session.flush() - return self.app.model.DeferredJob.states.OK - - def _check_compress( self, filepath ): - retval = '' - if tarfile.is_tarfile( filepath ): - retval = 'tar.' - if check_zip( filepath ): - return 'zip' - is_bzipped, is_valid = check_bz2( filepath ) - if is_bzipped and is_valid: - return retval + 'bzip' - is_gzipped, is_valid = check_gzip( filepath ) - if is_gzipped and is_valid: - return retval + 'gzip' - return None - - def _add_line( self, locfile, newline ): - filepath = self.locations[ locfile ] - origlines = [] - output = [] - comments = [] - with open( filepath, 'r' ) as destfile: - for line in destfile: - if line.startswith( '#' ): - comments.append( line.strip() ) - else: - origlines.append( line.strip() ) - if newline not in origlines: - origlines.append( newline ) - output.extend( comments ) - origlines.sort() - output.extend( origlines ) - with open( filepath, 'w+' ) as destfile: - destfile.write( '\n'.join( output ) ) - diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf lib/galaxy/jobs/deferred/liftover_transfer.py --- a/lib/galaxy/jobs/deferred/liftover_transfer.py +++ /dev/null @@ -1,158 +0,0 @@ -""" -Module for managing genome transfer jobs. -""" -from __future__ import with_statement - -import logging, shutil, gzip, tempfile, sys - -from galaxy import eggs -from sqlalchemy import and_ - -from galaxy.util.odict import odict -from galaxy.workflow.modules import module_factory -from galaxy.jobs.actions.post import ActionBox - -from galaxy.tools.parameters import visit_input_values -from galaxy.tools.parameters.basic import DataToolParameter - -from galaxy.datatypes.checkers import * - -from data_transfer import * - -log = logging.getLogger( __name__ ) - -__all__ = [ 'LiftOverTransferPlugin' ] - -class LiftOverTransferPlugin( DataTransfer ): - - locations = {} - - def __init__( self, app ): - super( LiftOverTransferPlugin, self ).__init__( app ) - self.app = app - self.sa_session = app.model.context.current - - def create_job( self, trans, url, dbkey, from_genome, to_genome, destfile, parentjob ): - job = trans.app.transfer_manager.new( protocol='http', url=url ) - params = dict( user=trans.user.id, transfer_job_id=job.id, protocol='http', - type='init_transfer', dbkey=dbkey, from_genome=from_genome, - to_genome=to_genome, destfile=destfile, parentjob=parentjob ) - deferred = trans.app.model.DeferredJob( state = self.app.model.DeferredJob.states.NEW, plugin = 'LiftOverTransferPlugin', params = params ) - self.sa_session.add( deferred ) - self.sa_session.flush() - return deferred.id - - def check_job( self, job ): - if job.params['type'] == 'init_transfer': - if not hasattr(job, 'transfer_job'): - job.transfer_job = self.sa_session.query( self.app.model.TransferJob ).get( int( job.params[ 'transfer_job_id' ] ) ) - else: - self.sa_session.refresh( job.transfer_job ) - if job.transfer_job.state == 'done': - transfer = job.transfer_job - transfer.state = 'downloaded' - job.params['type'] = 'extract_transfer' - self.sa_session.add( job ) - self.sa_session.add( transfer ) - self.sa_session.flush() - return self.job_states.READY - elif job.transfer_job.state == 'running': - return self.job_states.WAIT - elif job.transfer_job.state == 'new': - assert job.params[ 'protocol' ] in [ 'http', 'ftp', 'https' ], 'Unknown protocol %s' % job.params[ 'protocol' ] - ready = True - parent = self.sa_session.query( self.app.model.DeferredJob ).get( int( job.params[ 'parentjob' ] ) ) - if not hasattr( parent, 'transfer_job' ): - parent.transfer_job = self.sa_session.query( self.app.model.TransferJob ).get( int( parent.params[ 'transfer_job_id' ] ) ) - if parent.transfer_job.state not in [ 'ok', 'error', 'done' ]: - ready = False - for lo_job in parent.params[ 'liftover' ]: - liftoverjob = self.sa_session.query( self.app.model.TransferJob ).get( int( lo_job ) ) - if liftoverjob: - if liftoverjob.state not in [ 'ok', 'error', 'new', 'done' ]: - ready = False - if ready: - self.app.transfer_manager.run( job.transfer_job ) - self.sa_session.add( job.transfer_job ) - self.sa_session.flush() - return self.job_states.WAIT - else: - log.error( "An error occurred while downloading from %s" % job.transfer_job.params[ 'url' ] ) - return self.job_states.INVALID - elif job.params[ 'type' ] == 'extract_transfer': - return self.job_states.READY - - def get_job_status( self, jobid ): - job = self.sa_session.query( self.app.model.DeferredJob ).get( int( jobid ) ) - return job - - def run_job( self, job ): - params = job.params - dbkey = params[ 'dbkey' ] - source = params[ 'from_genome' ] - target = params[ 'to_genome' ] - if not hasattr( job, 'transfer_job' ): - job.transfer_job = self.sa_session.query( self.app.model.TransferJob ).get( int( job.params[ 'transfer_job_id' ] ) ) - else: - self.sa_session.refresh( job.transfer_job ) - transfer = job.transfer_job - if params[ 'type' ] == 'extract_transfer': - CHUNK_SIZE = 2**20 - destpath = os.path.join( self.app.config.get( 'genome_data_path', 'tool-data/genome' ), source, 'liftOver' ) - if not os.path.exists( destpath ): - os.makedirs( destpath ) - destfile = job.params[ 'destfile' ] - destfilepath = os.path.join( destpath, destfile ) - tmpprefix = '%s_%s_download_unzip_' % ( job.params['dbkey'], job.params[ 'transfer_job_id' ] ) - tmppath = os.path.dirname( os.path.abspath( transfer.path ) ) - if not os.path.exists( destpath ): - os.makedirs( destpath ) - fd, uncompressed = tempfile.mkstemp( prefix=tmpprefix, dir=tmppath, text=False ) - chain = gzip.open( transfer.path, 'rb' ) - while 1: - try: - chunk = chain.read( CHUNK_SIZE ) - except IOError: - os.close( fd ) - log.error( 'Problem decompressing compressed data' ) - exit() - if not chunk: - break - os.write( fd, chunk ) - os.close( fd ) - chain.close() - # Replace the gzipped file with the decompressed file if it's safe to do so - shutil.move( uncompressed, destfilepath ) - os.remove( transfer.path ) - os.chmod( destfilepath, 0644 ) - locline = '\t'.join( [ source, target, os.path.abspath( destfilepath ) ] ) - self._add_line( locline ) - job.state = self.app.model.DeferredJob.states.OK - job.params[ 'type' ] = 'finish_transfer' - transfer.path = os.path.abspath(destfilepath) - transfer.state = 'done' - parentjob = self.sa_session.query( self.app.model.DeferredJob ).get( int( job.params[ 'parentjob' ] ) ) - finished = True - for i in parentjob.params[ 'liftover' ]: - sibling = self.sa_session.query( self.app.model.DeferredJob ).get( int( i ) ) - if sibling.state not in [ 'done', 'ok', 'error' ]: - finished = False - if finished: - parentjob.state = self.app.model.DeferredJob.states.OK - self.sa_session.add( parentjob ) - self.sa_session.add( job ) - self.sa_session.add( transfer ) - self.sa_session.flush() - return self.app.model.DeferredJob.states.OK - - def _add_line( self, newline ): - filepath = 'tool-data/liftOver.loc' - origlines = [] - with open( filepath, 'r' ) as destfile: - for line in destfile: - origlines.append( line.strip() ) - if newline not in origlines: - origlines.append( newline ) - with open( filepath, 'w+' ) as destfile: - destfile.write( '\n'.join( origlines ) ) - diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf lib/galaxy/jobs/mapper.py --- a/lib/galaxy/jobs/mapper.py +++ b/lib/galaxy/jobs/mapper.py @@ -83,7 +83,7 @@ if "job" in function_arg_names or "user" in function_arg_names or "user_email" in function_arg_names or "resource_params" in function_arg_names: job = self.job_wrapper.get_job() history = job.history - user = history and history.user + user = job.user user_email = user and str(user.email) if "job" in function_arg_names: diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf lib/galaxy/jobs/metrics/formatting.py --- a/lib/galaxy/jobs/metrics/formatting.py +++ b/lib/galaxy/jobs/metrics/formatting.py @@ -15,4 +15,4 @@ elif value < 3600: return "%s minutes" % ( value / 60 ) else: - return "%s days and %s minutes" % ( value / 3600, ( value % 3600 ) / 60 ) + return "%s hours and %s minutes" % ( value / 3600, ( value % 3600 ) / 60 ) diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf lib/galaxy/managers/__init__.py --- a/lib/galaxy/managers/__init__.py +++ b/lib/galaxy/managers/__init__.py @@ -1,4 +1,33 @@ -""" 'Business logic' independent of web transactions/user context (trans) -should be pushed into models - but logic that requires the context trans -should be placed under this module. """ +Classes that manage resources (models, tools, etc.) by using the current +Transaction. + +Encapsulates the intersection of trans (or trans.sa_session), models, +and Controllers. + +Responsibilities: + model operations that involve the trans/sa_session (CRUD) + security: + ownership, accessibility + common aspect-oriented operations via new mixins: + sharable, annotatable, tagable, ratable + +Not responsible for: + encoding/decoding ids + any http gobblygook + formatting of returned data (always python structures) + formatting of raised errors + +The goal is to have Controllers only handle: + query-string/payload parsing and encoding/decoding ids + http + return formatting + +and: + control, improve namespacing in Controllers + DRY for Controller ops (define here - use in both UI/API Controllers) + +In other words, 'Business logic' independent of web transactions/user context +(trans) should be pushed into models - but logic that requires the context +trans should be placed under this module. +""" diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf lib/galaxy/managers/base.py --- /dev/null +++ b/lib/galaxy/managers/base.py @@ -0,0 +1,7 @@ + + +class ModelManager( object ): + pass + +class ModelSerializer( object ): + pass diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf lib/galaxy/managers/hdas.py --- a/lib/galaxy/managers/hdas.py +++ b/lib/galaxy/managers/hdas.py @@ -1,16 +1,35 @@ +""" +Manager and Serializer for HDAs. + +HistoryDatasetAssociations (HDAs) are datasets contained or created in a +history. +""" + from galaxy import exceptions -from ..managers import histories +from galaxy.managers import base as manager_base +from galaxy.managers import histories as history_manager -class HDAManager( object ): +import galaxy.web +import galaxy.datatypes.metadata +from galaxy import objectstore + +class HDAManager( manager_base.ModelManager ): + """ + Interface/service object for interacting with HDAs. + """ def __init__( self ): - self.histories_mgr = histories.HistoryManager() + """ + Set up and initialize other managers needed by hdas. + """ + self.histories_mgr = history_manager.HistoryManager() def get( self, trans, unencoded_id, check_ownership=True, check_accessible=True ): """ + Get an HDA by its unencoded db id, checking ownership (via its history) + or accessibility (via dataset shares/permissions). """ - # this is a replacement for UsesHistoryDatasetAssociationMixin because mixins are a bad soln/structure hda = trans.sa_session.query( trans.app.model.HistoryDatasetAssociation ).get( unencoded_id ) if hda is None: raise exceptions.ObjectNotFound() @@ -19,7 +38,8 @@ def secure( self, trans, hda, check_ownership=True, check_accessible=True ): """ - checks if (a) user owns item or (b) item is accessible to user. + check ownership (via its history) or accessibility (via dataset + shares/permissions). """ # all items are accessible to an admin if trans.user and trans.user_is_admin(): @@ -31,12 +51,18 @@ return hda def can_access_dataset( self, trans, hda ): + """ + Use security agent to see if current user has access to dataset. + """ current_user_roles = trans.get_current_user_roles() return trans.app.security_agent.can_access_dataset( current_user_roles, hda.dataset ) #TODO: is_owner, is_accessible def check_ownership( self, trans, hda ): + """ + Use history to see if current user owns HDA. + """ if not trans.user: #if hda.history == trans.history: # return hda @@ -51,6 +77,9 @@ "HistoryDatasetAssociation is not owned by the current user", type='error' ) def check_accessible( self, trans, hda ): + """ + Raise error if HDA is not accessible. + """ if trans.user and trans.user_is_admin(): return hda # check for access of the containing history... @@ -62,6 +91,151 @@ "HistoryDatasetAssociation is not accessible to the current user", type='error' ) def err_if_uploading( self, trans, hda ): + """ + Raise error if HDA is still uploading. + """ if hda.state == trans.model.Dataset.states.UPLOAD: raise exceptions.Conflict( "Please wait until this dataset finishes uploading" ) return hda + + def get_hda_dict( self, trans, hda ): + """ + Return full details of this HDA in dictionary form. + """ + #precondition: the user's access to this hda has already been checked + #TODO:?? postcondition: all ids are encoded (is this really what we want at this level?) + expose_dataset_path = trans.user_is_admin() or trans.app.config.expose_dataset_path + hda_dict = hda.to_dict( view='element', expose_dataset_path=expose_dataset_path ) + hda_dict[ 'api_type' ] = "file" + + # Add additional attributes that depend on trans must be added here rather than at the model level. + can_access_hda = trans.app.security_agent.can_access_dataset( trans.get_current_user_roles(), hda.dataset ) + can_access_hda = ( trans.user_is_admin() or can_access_hda ) + if not can_access_hda: + return self.get_inaccessible_hda_dict( trans, hda ) + hda_dict[ 'accessible' ] = True + + #TODO: I'm unclear as to which access pattern is right + hda_dict[ 'annotation' ] = hda.get_item_annotation_str( trans.sa_session, hda.history.user, hda ) + #annotation = getattr( hda, 'annotation', hda.get_item_annotation_str( trans.sa_session, trans.user, hda ) ) + + # ---- return here if deleted AND purged OR can't access + purged = ( hda.purged or hda.dataset.purged ) + if ( hda.deleted and purged ): + #TODO: to_dict should really go AFTER this - only summary data + return trans.security.encode_dict_ids( hda_dict ) + + if expose_dataset_path: + try: + hda_dict[ 'file_name' ] = hda.file_name + except objectstore.ObjectNotFound: + log.exception( 'objectstore.ObjectNotFound, HDA %s.', hda.id ) + + hda_dict[ 'download_url' ] = galaxy.web.url_for( 'history_contents_display', + history_id = trans.security.encode_id( hda.history.id ), + history_content_id = trans.security.encode_id( hda.id ) ) + + # indeces, assoc. metadata files, etc. + meta_files = [] + for meta_type in hda.metadata.spec.keys(): + if isinstance( hda.metadata.spec[ meta_type ].param, galaxy.datatypes.metadata.FileParameter ): + meta_files.append( dict( file_type=meta_type ) ) + if meta_files: + hda_dict[ 'meta_files' ] = meta_files + + # currently, the viz reg is optional - handle on/off + if trans.app.visualizations_registry: + hda_dict[ 'visualizations' ] = trans.app.visualizations_registry.get_visualizations( trans, hda ) + else: + hda_dict[ 'visualizations' ] = hda.get_visualizations() + #TODO: it may also be wiser to remove from here and add as API call that loads the visualizations + # when the visualizations button is clicked (instead of preloading/pre-checking) + + # ---- return here if deleted + if hda.deleted and not purged: + return trans.security.encode_dict_ids( hda_dict ) + + return trans.security.encode_dict_ids( hda_dict ) + + def get_inaccessible_hda_dict( self, trans, hda ): + """ + Return truncated serialization of HDA when inaccessible to user. + """ + return trans.security.encode_dict_ids({ + 'id' : hda.id, + 'history_id': hda.history.id, + 'hid' : hda.hid, + 'name' : hda.name, + 'state' : hda.state, + 'deleted' : hda.deleted, + 'visible' : hda.visible, + 'accessible': False + }) + + def get_hda_dict_with_error( self, trans, hda=None, history_id=None, id=None, error_msg='Error' ): + """ + Return truncated serialization of HDA when error raised getting + details. + """ + return trans.security.encode_dict_ids({ + 'id' : hda.id if hda else id, + 'history_id': hda.history.id if hda else history_id, + 'hid' : hda.hid if hda else '(unknown)', + 'name' : hda.name if hda else '(unknown)', + 'error' : error_msg, + 'state' : trans.model.Dataset.states.NEW + }) + + def get_display_apps( self, trans, hda ): + """ + Return dictionary containing new-style display app urls. + """ + display_apps = [] + for display_app in hda.get_display_applications( trans ).itervalues(): + + app_links = [] + for link_app in display_app.links.itervalues(): + app_links.append({ + 'target': link_app.url.get( 'target_frame', '_blank' ), + 'href' : link_app.get_display_url( hda, trans ), + 'text' : gettext( link_app.name ) + }) + if app_links: + display_apps.append( dict( label=display_app.name, links=app_links ) ) + + return display_apps + + def get_old_display_applications( self, trans, hda ): + """ + Return dictionary containing old-style display app urls. + """ + display_apps = [] + if not trans.app.config.enable_old_display_applications: + return display_apps + + for display_app in hda.datatype.get_display_types(): + target_frame, display_links = hda.datatype.get_display_links( hda, + display_app, trans.app, trans.request.base ) + + if len( display_links ) > 0: + display_label = hda.datatype.get_display_label( display_app ) + + app_links = [] + for display_name, display_link in display_links: + app_links.append({ + 'target': target_frame, + 'href' : display_link, + 'text' : gettext( display_name ) + }) + if app_links: + display_apps.append( dict( label=display_label, links=app_links ) ) + + return display_apps + + +# ============================================================================= +class HistorySerializer( manager_base.ModelSerializer ): + """ + Interface/service object for serializing HDAs into dictionaries. + """ + pass diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf lib/galaxy/managers/histories.py --- a/lib/galaxy/managers/histories.py +++ b/lib/galaxy/managers/histories.py @@ -1,9 +1,32 @@ +""" +Manager and Serializer for histories. + +Histories are containers for datasets or dataset collections +created (or copied) by users over the course of an analysis. +""" + from galaxy import exceptions from galaxy.model import orm +from galaxy.managers import base as manager_base +import galaxy.managers.hdas -class HistoryManager( object ): +import galaxy.web +import galaxy.dataset_collections.util + +import logging +log = logging.getLogger( __name__ ) + + +# ============================================================================= +class HistoryManager( manager_base.ModelManager ): + """ + Interface/service object for interacting with HDAs. + """ + #TODO: all the following would be more useful if passed the user instead of defaulting to trans.user + def __init__( self, *args, **kwargs ): + super( HistoryManager, self ).__init__( *args, **kwargs ) def get( self, trans, unencoded_id, check_ownership=True, check_accessible=True, deleted=None ): """ @@ -44,7 +67,7 @@ def secure( self, trans, history, check_ownership=True, check_accessible=True ): """ - checks if (a) user owns item or (b) item is accessible to user. + Checks if (a) user owns item or (b) item is accessible to user. """ # all items are accessible to an admin if trans.user and trans.user_is_admin(): @@ -56,15 +79,28 @@ return history def is_current( self, trans, history ): + """ + True if the given history is the user's current history. + + Returns False if the session has no current history. + """ + if trans.history is None: + return False return trans.history == history def is_owner( self, trans, history ): + """ + True if the current user is the owner of the given history. + """ # anon users are only allowed to view their current history if not trans.user: return self.is_current( trans, history ) return trans.user == history.user def check_ownership( self, trans, history ): + """ + Raises error if the current user is not the owner of the history. + """ if trans.user and trans.user_is_admin(): return history if not trans.user and not self.is_current( trans, history ): @@ -74,6 +110,9 @@ raise exceptions.ItemOwnershipException( "History is not owned by the current user", type='error' ) def is_accessible( self, trans, history ): + """ + True if the user can access (read) the current history. + """ # admin always have access if trans.user and trans.user_is_admin(): return True @@ -88,6 +127,103 @@ return False def check_accessible( self, trans, history ): + """ + Raises error if the current user can't access the history. + """ if self.is_accessible( trans, history ): return history raise exceptions.ItemAccessibilityException( "History is not accessible to the current user", type='error' ) + + #TODO: bleh... + def _get_history_data( self, trans, history ): + """ + Returns a dictionary containing ``history`` and ``contents``, serialized + history and an array of serialized history contents respectively. + """ + hda_mgr = galaxy.managers.hdas.HDAManager() + collection_dictifier = galaxy.dataset_collections.util.dictify_dataset_collection_instance + + history_dictionary = {} + contents_dictionaries = [] + try: + #for content in history.contents_iter( **contents_kwds ): + for content in history.contents_iter( types=[ 'dataset', 'dataset_collection' ] ): + hda_dict = {} + + if isinstance( content, trans.app.model.HistoryDatasetAssociation ): + try: + hda_dict = hda_mgr.get_hda_dict( trans, content ) + except Exception, exc: + # don't fail entire list if hda err's, record and move on + log.exception( 'Error bootstrapping hda: %s', exc ) + hda_dict = hda_mgr.get_hda_dict_with_error( trans, content, str( exc ) ) + + elif isinstance( content, trans.app.model.HistoryDatasetCollectionAssociation ): + try: + service = trans.app.dataset_collections_service + dataset_collection_instance = service.get_dataset_collection_instance( + trans=trans, + instance_type='history', + id=trans.security.encode_id( content.id ), + ) + hda_dict = collection_dictifier( dataset_collection_instance, + security=trans.security, parent=dataset_collection_instance.history, view="element" ) + + except Exception, exc: + log.exception( "Error in history API at listing dataset collection: %s", exc ) + #TODO: return some dict with the error + + contents_dictionaries.append( hda_dict ) + + # re-use the hdas above to get the history data... + history_dictionary = self.get_history_dict( trans, history, contents_dictionaries=contents_dictionaries ) + + except Exception, exc: + user_id = str( trans.user.id ) if trans.user else '(anonymous)' + log.exception( 'Error bootstrapping history for user %s: %s', user_id, str( exc ) ) + message = ( 'An error occurred getting the history data from the server. ' + + 'Please contact a Galaxy administrator if the problem persists.' ) + history_dictionary[ 'error' ] = message + + return { + 'history' : history_dictionary, + 'contents' : contents_dictionaries + } + + def get_history_dict( self, trans, history, contents_dictionaries=None ): + """ + Returns history data in the form of a dictionary. + """ + #TODO: to serializer + history_dict = history.to_dict( view='element', value_mapper={ 'id':trans.security.encode_id }) + history_dict[ 'user_id' ] = None + if history.user_id: + history_dict[ 'user_id' ] = trans.security.encode_id( history.user_id ) + + history_dict[ 'nice_size' ] = history.get_disk_size( nice_size=True ) + history_dict[ 'annotation' ] = history.get_item_annotation_str( trans.sa_session, history.user, history ) + if not history_dict[ 'annotation' ]: + history_dict[ 'annotation' ] = '' + + #TODO: item_slug url + if history_dict[ 'importable' ] and history_dict[ 'slug' ]: + username_and_slug = ( '/' ).join(( 'u', history.user.username, 'h', history_dict[ 'slug' ] )) + history_dict[ 'username_and_slug' ] = username_and_slug + +#TODO: re-add + #hda_summaries = hda_dictionaries if hda_dictionaries else self.get_hda_summary_dicts( trans, history ) + ##TODO remove the following in v2 + #( state_counts, state_ids ) = self._get_hda_state_summaries( trans, hda_summaries ) + #history_dict[ 'state_details' ] = state_counts + #history_dict[ 'state_ids' ] = state_ids + #history_dict[ 'state' ] = self._get_history_state_from_hdas( trans, history, state_counts ) + + return history_dict + + +# ============================================================================= +class HistorySerializer( manager_base.ModelSerializer ): + """ + Interface/service object for serializing histories into dictionaries. + """ + pass diff -r 6249e3b45f8039099fa696a35f237d898a7ab626 -r c32e9cecb879d613b25fe270f6c2a86562d23cdf lib/galaxy/model/tool_shed_install/__init__.py --- a/lib/galaxy/model/tool_shed_install/__init__.py +++ b/lib/galaxy/model/tool_shed_install/__init__.py @@ -68,7 +68,9 @@ @property def can_deactivate( self ): - return self.status not in [ self.installation_status.DEACTIVATED, self.installation_status.UNINSTALLED ] + return self.status not in [ self.installation_status.DEACTIVATED, + self.installation_status.ERROR, + self.installation_status.UNINSTALLED ] @property def can_reinstall_or_activate( self ): This diff is so big that we needed to truncate the remainder. https://bitbucket.org/galaxy/galaxy-central/commits/21fed77e18f8/ Changeset: 21fed77e18f8 User: dannon Date: 2014-07-10 20:33:26 Summary: Pack scripts. Affected #: 1 file diff -r c32e9cecb879d613b25fe270f6c2a86562d23cdf -r 21fed77e18f88ae64023afe5c64fc9866270bde8 static/scripts/packed/galaxy.workflows.js --- a/static/scripts/packed/galaxy.workflows.js +++ b/static/scripts/packed/galaxy.workflows.js @@ -1,1 +1,1 @@ -$(function(){if(window.lt_ie_7){show_modal("Browser not supported","Sorry, the workflow editor is not supported for IE6 and below.");return}$("#tool-search-query").click(function(){$(this).focus();$(this).select()}).keyup(function(){$(this).css("font-style","normal");if(this.value.length<3){reset_tool_search(false)}else{if(this.value!=this.lastValue){$(this).addClass("search_active");var g=this.value+"*";if(this.timer){clearTimeout(this.timer)}$("#search-spinner").show();this.timer=setTimeout(function(){$.get(tool_search_url,{query:g},function(i){$("#search-no-results").hide();$(".toolSectionWrapper").hide();$(".toolSectionWrapper").find(".toolTitle").hide();if(i.length!=0){var h=$.map(i,function(k,j){return"link-"+k});$(h).each(function(j,k){$("[id='"+k+"']").parent().addClass("search_match");$("[id='"+k+"']").parent().show().parent().parent().show().parent().show()});$(".toolPanelLabel").each(function(){var l=$(this);var k=l.next();var j=true;while(k.length!==0&&k.hasClass("toolTitle")){if(k.is(":visible")){j=false;break}else{k=k.next()}}if(j){l.hide()}})}else{$("#search-no-results").show()}$("#search-spinner").hide()},"json")},200)}}this.lastValue=this.value});canvas_manager=new CanvasManager($("#canvas-viewport"),$("#overview"));reset();$.ajax({url:get_datatypes_url,dataType:"json",cache:false,success:function(g){populate_datatype_info(g);$.ajax({url:load_workflow_url,data:{id:workflow_id,_:"true"},dataType:"json",cache:false,success:function(h){reset();workflow.from_simple(h);workflow.has_changes=false;workflow.fit_canvas_to_nodes();scroll_to_nodes();canvas_manager.draw_overview();upgrade_message="";$.each(h.upgrade_messages,function(j,i){upgrade_message+=("<li>Step "+(parseInt(j,10)+1)+": "+workflow.nodes[j].name+"<ul>");$.each(i,function(k,l){upgrade_message+="<li>"+l+"</li>"});upgrade_message+="</ul></li>"});if(upgrade_message){show_modal("Workflow loaded with changes","Problems were encountered loading this workflow (possibly a result of tool upgrades). Please review the following parameters and then save.<ul>"+upgrade_message+"</ul>",{Continue:hide_modal})}else{hide_modal()}show_workflow_parameters()},beforeSubmit:function(h){show_message("Loading workflow","progress")}})}});$(document).ajaxStart(function(){active_ajax_call=true;$(document).bind("ajaxStop.global",function(){active_ajax_call=false})});$(document).ajaxError(function(i,g){var h=g.responseText||g.statusText||"Could not connect to server";show_modal("Server error",h,{"Ignore error":hide_modal});return false});make_popupmenu($("#workflow-options-button"),{Save:save_current_workflow,Run:function(){window.location=run_workflow_url},"Edit Attributes":c,"Auto Re-layout":f,Close:close_editor});function b(){workflow.clear_active_node();$(".right-content").hide();var j="";for(var h in workflow.nodes){var i=workflow.nodes[h];if(i.type=="tool"){j+="<div class='toolForm' style='margin-bottom:5px;'><div class='toolFormTitle'>Step "+i.id+" - "+i.name+"</div>";for(var k in i.output_terminals){var g=i.output_terminals[k];if($.inArray(g.name,i.workflow_outputs)!=-1){j+="<p>"+g.name+"<input type='checkbox' name='"+i.id+"|"+g.name+"' checked /></p>"}else{j+="<p>"+g.name+"<input type='checkbox' name='"+i.id+"|"+g.name+"' /></p>"}}j+="</div>"}}$("#output-fill-area").html(j);$("#output-fill-area input").bind("click",function(){var n=this.name.split("|")[0];var l=this.name.split("|")[1];if(this.checked){if($.inArray(l,workflow.nodes[n].workflow_outputs)==-1){workflow.nodes[n].workflow_outputs.push(l)}}else{while($.inArray(l,workflow.nodes[n].workflow_outputs)!=-1){var m=$.inArray(l,workflow.nodes[n].workflow_outputs);workflow.nodes[n].workflow_outputs=workflow.nodes[n].workflow_outputs.slice(0,m).concat(workflow.nodes[n].workflow_outputs.slice(m+1))}}workflow.has_changes=true});$("#workflow-output-area").show()}function f(){workflow.layout();workflow.fit_canvas_to_nodes();scroll_to_nodes();canvas_manager.draw_overview()}function c(){workflow.clear_active_node();$(".right-content").hide();$("#edit-attributes").show()}overview_size=$.jStorage.get("overview-size");if(overview_size!==undefined){$("#overview-border").css({width:overview_size,height:overview_size})}if($.jStorage.get("overview-off")){d()}else{e()}$("#overview-border").bind("dragend",function(h,j){var k=$(this).offsetParent();var i=k.offset();var g=Math.max(k.width()-(j.offsetX-i.left),k.height()-(j.offsetY-i.top));$.jStorage.set("overview-size",g+"px")});function e(){$.jStorage.set("overview-off",false);$("#overview-border").css("right","0px");$("#close-viewport").css("background-position","0px 0px")}function d(){$.jStorage.set("overview-off",true);$("#overview-border").css("right","20000px");$("#close-viewport").css("background-position","12px 0px")}$("#close-viewport").click(function(){if($("#overview-border").css("right")==="0px"){d()}else{e()}});window.onbeforeunload=function(){if(workflow&&workflow.has_changes){return"There are unsaved changes to your workflow which will be lost."}};$("div.toolSectionBody").hide();$("div.toolSectionTitle > span").wrap("<a href='#'></a>");var a=null;$("div.toolSectionTitle").each(function(){var g=$(this).next("div.toolSectionBody");$(this).click(function(){if(g.is(":hidden")){if(a){a.slideUp("fast")}a=g;g.slideDown("fast")}else{g.slideUp("fast");a=null}})});async_save_text("workflow-name","workflow-name",rename_async_url,"new_name");$("#workflow-tag").click(function(){$(".tag-area").click();return false});async_save_text("workflow-annotation","workflow-annotation",annotate_async_url,"new_annotation",25,true,4)});function reset(){if(workflow){workflow.remove_all()}workflow=new Workflow($("#canvas-container"))}function scroll_to_nodes(){var a=$("#canvas-viewport");var d=$("#canvas-container");var c,b;if(d.width()<a.width()){b=(a.width()-d.width())/2}else{b=0}if(d.height()<a.height()){c=(a.height()-d.height())/2}else{c=0}d.css({left:b,top:c})}function add_node_for_tool(b,a){node=add_node("tool",a,b);$.ajax({url:get_new_module_info_url,data:{type:"tool",tool_id:b,_:"true"},global:false,dataType:"json",success:function(c){node.init_field_data(c)},error:function(d,f){var c="error loading field data";if(d.status===0){c+=", server unavailable"}node.error(c)}})}function add_node_for_module(a,b){node=add_node(a,b);$.ajax({url:get_new_module_info_url,data:{type:a,_:"true"},dataType:"json",success:function(c){node.init_field_data(c)},error:function(d,f){var c="error loading field data";if(d.status==0){c+=", server unavailable"}node.error(c)}})}function display_pja(b,a){$("#pja_container").append(get_pja_form(b));$("#pja_container>.toolForm:last>.toolFormTitle>.buttons").click(function(){action_to_rem=$(this).closest(".toolForm",".action_tag").children(".action_tag:first").text();$(this).closest(".toolForm").remove();delete workflow.active_node.post_job_actions[action_to_rem];workflow.active_form_has_changes=true})}function display_pja_list(){return pja_list}function display_file_list(b){addlist="<select id='node_data_list' name='node_data_list'>";for(var a in b.output_terminals){addlist+="<option value='"+a+"'>"+a+"</option>"}addlist+="</select>";return addlist}function new_pja(d,b,a){if(a.post_job_actions===undefined){a.post_job_actions={}}if(a.post_job_actions[d+b]===undefined){var c={};c.action_type=d;c.output_name=b;a.post_job_actions[d+b]=null;a.post_job_actions[d+b]=c;display_pja(c,a);workflow.active_form_has_changes=true;return true}else{return false}}function show_workflow_parameters(){var c=/\$\{.+?\}/g;var b=[];var f=$("#workflow-parameters-container");var e=$("#workflow-parameters-box");var a="";var d=[];$.each(workflow.nodes,function(g,h){var i=h.form_html.match(c);if(i){d=d.concat(i)}if(h.post_job_actions){$.each(h.post_job_actions,function(j,l){if(l.action_arguments){$.each(l.action_arguments,function(m,n){var o=n.match(c);if(o){d=d.concat(o)}})}});if(d){$.each(d,function(j,l){if($.inArray(l,b)===-1){b.push(l)}})}}});if(b&&b.length!==0){$.each(b,function(g,h){a+="<div>"+h.substring(2,h.length-1)+"</div>"});f.html(a);e.show()}else{f.html(a);e.hide()}}function show_form_for_tool(c,b){$(".right-content").hide();$("#right-content").show().html(c);if(b){$("#right-content").find(".toolForm:first").after("<p><div class='metadataForm'><div class='metadataFormTitle'>Edit Step Attributes</div><div class='form-row'><label>Annotation / Notes:</label><div style='margin-right: 10px;'><textarea name='annotation' rows='3' style='width: 100%'>"+b.annotation+"</textarea><div class='toolParamHelp'>Add an annotation or notes to this step; annotations are available when a workflow is viewed.</div></div></div></div>")}if(b&&b.type=="tool"){pjastr="<p><div class='metadataForm'><div class='metadataFormTitle'>Edit Step Actions</div><div class='form-row'> "+display_pja_list()+" <br/> "+display_file_list(b)+" <div class='action-button' style='border:1px solid black;display:inline;' id='add_pja'>Create</div></div><div class='form-row'><div style='margin-right: 10px;'><span id='pja_container'></span>";pjastr+="<div class='toolParamHelp'>Add actions to this step; actions are applied when this workflow step completes.</div></div></div></div>";$("#right-content").find(".toolForm").after(pjastr);for(var a in b.post_job_actions){if(a!="undefined"){display_pja(b.post_job_actions[a],b)}}$("#add_pja").click(function(){new_pja($("#new_pja_list").val(),$("#node_data_list").val(),b)})}$("#right-content").find("form").ajaxForm({type:"POST",dataType:"json",success:function(d){workflow.active_form_has_changes=false;b.update_field_data(d);show_workflow_parameters()},beforeSubmit:function(d){d.push({name:"tool_state",value:b.tool_state});d.push({name:"_",value:"true"})}}).each(function(){var d=this;$(this).find("select[refresh_on_change='true']").change(function(){$(d).submit()});$(this).find("input[refresh_on_change='true']").change(function(){$(d).submit()});$(this).find(".popupmenu").each(function(){var g=$(this).parents("div.form-row").attr("id");var e=$('<a class="popup-arrow" id="popup-arrow-for-'+g+'">▼</a>');var f={};$(this).find("button").each(function(){var h=$(this).attr("name");var i=$(this).attr("value");f[$(this).text()]=function(){$(d).append("<input type='hidden' name='"+h+"' value='"+i+"' />").submit()}});e.insertAfter(this);$(this).remove();make_popupmenu(e,f)});$(this).find("input,textarea,select").each(function(){$(this).bind("focus click",function(){workflow.active_form_has_changes=true})})})}var close_editor=function(){workflow.check_changes_in_active_form();if(workflow&&workflow.has_changes){do_close=function(){window.onbeforeunload=undefined;window.document.location=workflow_index_url};show_modal("Close workflow editor","There are unsaved changes to your workflow which will be lost.",{Cancel:hide_modal,"Save Changes":function(){save_current_workflow(null,do_close)}},{"Don't Save":do_close})}else{window.document.location=workflow_index_url}};var save_current_workflow=function(b,c){show_message("Saving workflow","progress");workflow.check_changes_in_active_form();if(!workflow.has_changes){hide_modal();if(c){c()}return}workflow.rectify_workflow_outputs();var a=function(d){$.ajax({url:save_workflow_url,type:"POST",data:{id:workflow_id,workflow_data:function(){return JSON.stringify(workflow.to_simple())},_:"true"},dataType:"json",success:function(g){var e=$("<div></div>").text(g.message);if(g.errors){e.addClass("warningmark");var f=$("<ul/>");$.each(g.errors,function(j,h){$("<li></li>").text(h).appendTo(f)});e.append(f)}else{e.addClass("donemark")}workflow.name=g.name;workflow.has_changes=false;workflow.stored=true;show_workflow_parameters();if(g.errors){show_modal("Saving workflow",e,{Ok:hide_modal})}else{if(d){d()}hide_modal()}}})};if(active_ajax_call){$(document).bind("ajaxStop.save_workflow",function(){$(document).unbind("ajaxStop.save_workflow");a();$(document).unbind("ajaxStop.save_workflow");active_ajax_call=false})}else{a(c)}}; \ No newline at end of file +$(function(){if(window.lt_ie_7){show_modal("Browser not supported","Sorry, the workflow editor is not supported for IE6 and below.");return}$("#tool-search-query").click(function(){$(this).focus();$(this).select()}).keyup(function(){$(this).css("font-style","normal");if(this.value.length<3){reset_tool_search(false)}else{if(this.value!=this.lastValue){$(this).addClass("search_active");var g=this.value+"*";if(this.timer){clearTimeout(this.timer)}$("#search-spinner").show();this.timer=setTimeout(function(){$.get(tool_search_url,{query:g},function(i){$("#search-no-results").hide();$(".toolSectionWrapper").hide();$(".toolSectionWrapper").find(".toolTitle").hide();if(i.length!=0){var h=$.map(i,function(k,j){return"link-"+k});$(h).each(function(j,k){$("[id='"+k+"']").parent().addClass("search_match");$("[id='"+k+"']").parent().show().parent().parent().show().parent().show()});$(".toolPanelLabel").each(function(){var l=$(this);var k=l.next();var j=true;while(k.length!==0&&k.hasClass("toolTitle")){if(k.is(":visible")){j=false;break}else{k=k.next()}}if(j){l.hide()}})}else{$("#search-no-results").show()}$("#search-spinner").hide()},"json")},200)}}this.lastValue=this.value});canvas_manager=new CanvasManager($("#canvas-viewport"),$("#overview"));reset();$.ajax({url:get_datatypes_url,dataType:"json",cache:false,success:function(g){populate_datatype_info(g);$.ajax({url:load_workflow_url,data:{id:workflow_id,_:"true"},dataType:"json",cache:false,success:function(h){reset();workflow.from_simple(h);workflow.has_changes=false;workflow.fit_canvas_to_nodes();scroll_to_nodes();canvas_manager.draw_overview();upgrade_message="";$.each(h.upgrade_messages,function(j,i){upgrade_message+=("<li>Step "+(parseInt(j,10)+1)+": "+workflow.nodes[j].name+"<ul>");$.each(i,function(k,l){upgrade_message+="<li>"+l+"</li>"});upgrade_message+="</ul></li>"});if(upgrade_message){show_modal("Workflow loaded with changes","Problems were encountered loading this workflow (possibly a result of tool upgrades). Please review the following parameters and then save.<ul>"+upgrade_message+"</ul>",{Continue:hide_modal})}else{hide_modal()}show_workflow_parameters()},beforeSubmit:function(h){show_message("Loading workflow","progress")}})}});$(document).ajaxStart(function(){active_ajax_call=true;$(document).bind("ajaxStop.global",function(){active_ajax_call=false})});$(document).ajaxError(function(i,g){var h=g.responseText||g.statusText||"Could not connect to server";show_modal("Server error",h,{"Ignore error":hide_modal});return false});make_popupmenu($("#workflow-options-button"),{Save:save_current_workflow,Run:function(){window.location=run_workflow_url},"Edit Attributes":c,"Auto Re-layout":f,Close:close_editor});function b(){workflow.clear_active_node();$(".right-content").hide();var j="";for(var h in workflow.nodes){var i=workflow.nodes[h];if(i.type=="tool"){j+="<div class='toolForm' style='margin-bottom:5px;'><div class='toolFormTitle'>Step "+i.id+" - "+i.name+"</div>";for(var k in i.output_terminals){var g=i.output_terminals[k];if($.inArray(g.name,i.workflow_outputs)!=-1){j+="<p>"+g.name+"<input type='checkbox' name='"+i.id+"|"+g.name+"' checked /></p>"}else{j+="<p>"+g.name+"<input type='checkbox' name='"+i.id+"|"+g.name+"' /></p>"}}j+="</div>"}}$("#output-fill-area").html(j);$("#output-fill-area input").bind("click",function(){var n=this.name.split("|")[0];var l=this.name.split("|")[1];if(this.checked){if($.inArray(l,workflow.nodes[n].workflow_outputs)==-1){workflow.nodes[n].workflow_outputs.push(l)}}else{while($.inArray(l,workflow.nodes[n].workflow_outputs)!=-1){var m=$.inArray(l,workflow.nodes[n].workflow_outputs);workflow.nodes[n].workflow_outputs=workflow.nodes[n].workflow_outputs.slice(0,m).concat(workflow.nodes[n].workflow_outputs.slice(m+1))}}workflow.has_changes=true});$("#workflow-output-area").show()}function f(){workflow.layout();workflow.fit_canvas_to_nodes();scroll_to_nodes();canvas_manager.draw_overview()}function c(){workflow.clear_active_node();$(".right-content").hide();$("#edit-attributes").show()}overview_size=$.jStorage.get("overview-size");if(overview_size!==undefined){$("#overview-border").css({width:overview_size,height:overview_size})}if($.jStorage.get("overview-off")){d()}else{e()}$("#overview-border").bind("dragend",function(h,j){var k=$(this).offsetParent();var i=k.offset();var g=Math.max(k.width()-(j.offsetX-i.left),k.height()-(j.offsetY-i.top));$.jStorage.set("overview-size",g+"px")});function e(){$.jStorage.set("overview-off",false);$("#overview-border").css("right","0px");$("#close-viewport").css("background-position","0px 0px")}function d(){$.jStorage.set("overview-off",true);$("#overview-border").css("right","20000px");$("#close-viewport").css("background-position","12px 0px")}$("#close-viewport").click(function(){if($("#overview-border").css("right")==="0px"){d()}else{e()}});window.onbeforeunload=function(){if(workflow&&workflow.has_changes){return"There are unsaved changes to your workflow which will be lost."}};$("div.toolSectionBody").hide();$("div.toolSectionTitle > span").wrap("<a href='#'></a>");var a=null;$("div.toolSectionTitle").each(function(){var g=$(this).next("div.toolSectionBody");$(this).click(function(){if(g.is(":hidden")){if(a){a.slideUp("fast")}a=g;g.slideDown("fast")}else{g.slideUp("fast");a=null}})});async_save_text("workflow-name","workflow-name",rename_async_url,"new_name");$("#workflow-tag").click(function(){$(".tag-area").click();return false});async_save_text("workflow-annotation","workflow-annotation",annotate_async_url,"new_annotation",25,true,4)});function reset(){if(workflow){workflow.remove_all()}workflow=new Workflow($("#canvas-container"))}function scroll_to_nodes(){var a=$("#canvas-viewport");var d=$("#canvas-container");var c,b;if(d.width()<a.width()){b=(a.width()-d.width())/2}else{b=0}if(d.height()<a.height()){c=(a.height()-d.height())/2}else{c=0}d.css({left:b,top:c})}function add_node_for_tool(b,a){node=add_node("tool",a,b);$.ajax({url:get_new_module_info_url,data:{type:"tool",tool_id:b,_:"true"},global:false,dataType:"json",success:function(c){node.init_field_data(c)},error:function(d,f){var c="error loading field data";if(d.status===0){c+=", server unavailable"}node.error(c)}})}function add_node_for_module(a,b){node=add_node(a,b);$.ajax({url:get_new_module_info_url,data:{type:a,_:"true"},dataType:"json",success:function(c){node.init_field_data(c)},error:function(d,f){var c="error loading field data";if(d.status==0){c+=", server unavailable"}node.error(c)}})}function display_pja(b,a){$("#pja_container").append(get_pja_form(b,a));$("#pja_container>.toolForm:last>.toolFormTitle>.buttons").click(function(){action_to_rem=$(this).closest(".toolForm",".action_tag").children(".action_tag:first").text();$(this).closest(".toolForm").remove();delete workflow.active_node.post_job_actions[action_to_rem];workflow.active_form_has_changes=true})}function display_pja_list(){return pja_list}function display_file_list(b){addlist="<select id='node_data_list' name='node_data_list'>";for(var a in b.output_terminals){addlist+="<option value='"+a+"'>"+a+"</option>"}addlist+="</select>";return addlist}function new_pja(d,b,a){if(a.post_job_actions===undefined){a.post_job_actions={}}if(a.post_job_actions[d+b]===undefined){var c={};c.action_type=d;c.output_name=b;a.post_job_actions[d+b]=null;a.post_job_actions[d+b]=c;display_pja(c,a);workflow.active_form_has_changes=true;return true}else{return false}}function show_workflow_parameters(){var c=/\$\{.+?\}/g;var b=[];var f=$("#workflow-parameters-container");var e=$("#workflow-parameters-box");var a="";var d=[];$.each(workflow.nodes,function(g,h){var i=h.form_html.match(c);if(i){d=d.concat(i)}if(h.post_job_actions){$.each(h.post_job_actions,function(j,l){if(l.action_arguments){$.each(l.action_arguments,function(m,n){var o=n.match(c);if(o){d=d.concat(o)}})}});if(d){$.each(d,function(j,l){if($.inArray(l,b)===-1){b.push(l)}})}}});if(b&&b.length!==0){$.each(b,function(g,h){a+="<div>"+h.substring(2,h.length-1)+"</div>"});f.html(a);e.show()}else{f.html(a);e.hide()}}function show_form_for_tool(c,b){$(".right-content").hide();$("#right-content").show().html(c);if(b){$("#right-content").find(".toolForm:first").after("<p><div class='metadataForm'><div class='metadataFormTitle'>Edit Step Attributes</div><div class='form-row'><label>Annotation / Notes:</label><div style='margin-right: 10px;'><textarea name='annotation' rows='3' style='width: 100%'>"+b.annotation+"</textarea><div class='toolParamHelp'>Add an annotation or notes to this step; annotations are available when a workflow is viewed.</div></div></div></div>")}if(b&&b.type=="tool"){pjastr="<p><div class='metadataForm'><div class='metadataFormTitle'>Edit Step Actions</div><div class='form-row'> "+display_pja_list()+" <br/> "+display_file_list(b)+" <div class='action-button' style='border:1px solid black;display:inline;' id='add_pja'>Create</div></div><div class='form-row'><div style='margin-right: 10px;'><span id='pja_container'></span>";pjastr+="<div class='toolParamHelp'>Add actions to this step; actions are applied when this workflow step completes.</div></div></div></div>";$("#right-content").find(".toolForm").after(pjastr);for(var a in b.post_job_actions){if(a!="undefined"){display_pja(b.post_job_actions[a],b)}}$("#add_pja").click(function(){new_pja($("#new_pja_list").val(),$("#node_data_list").val(),b)})}$("#right-content").find("form").ajaxForm({type:"POST",dataType:"json",success:function(d){workflow.active_form_has_changes=false;b.update_field_data(d);show_workflow_parameters()},beforeSubmit:function(d){d.push({name:"tool_state",value:b.tool_state});d.push({name:"_",value:"true"})}}).each(function(){var d=this;$(this).find("select[refresh_on_change='true']").change(function(){$(d).submit()});$(this).find("input[refresh_on_change='true']").change(function(){$(d).submit()});$(this).find(".popupmenu").each(function(){var g=$(this).parents("div.form-row").attr("id");var e=$('<a class="popup-arrow" id="popup-arrow-for-'+g+'">▼</a>');var f={};$(this).find("button").each(function(){var h=$(this).attr("name");var i=$(this).attr("value");f[$(this).text()]=function(){$(d).append("<input type='hidden' name='"+h+"' value='"+i+"' />").submit()}});e.insertAfter(this);$(this).remove();make_popupmenu(e,f)});$(this).find("input,textarea,select").each(function(){$(this).bind("focus click",function(){workflow.active_form_has_changes=true})})})}var close_editor=function(){workflow.check_changes_in_active_form();if(workflow&&workflow.has_changes){do_close=function(){window.onbeforeunload=undefined;window.document.location=workflow_index_url};show_modal("Close workflow editor","There are unsaved changes to your workflow which will be lost.",{Cancel:hide_modal,"Save Changes":function(){save_current_workflow(null,do_close)}},{"Don't Save":do_close})}else{window.document.location=workflow_index_url}};var save_current_workflow=function(b,c){show_message("Saving workflow","progress");workflow.check_changes_in_active_form();if(!workflow.has_changes){hide_modal();if(c){c()}return}workflow.rectify_workflow_outputs();var a=function(d){$.ajax({url:save_workflow_url,type:"POST",data:{id:workflow_id,workflow_data:function(){return JSON.stringify(workflow.to_simple())},_:"true"},dataType:"json",success:function(g){var e=$("<div></div>").text(g.message);if(g.errors){e.addClass("warningmark");var f=$("<ul/>");$.each(g.errors,function(j,h){$("<li></li>").text(h).appendTo(f)});e.append(f)}else{e.addClass("donemark")}workflow.name=g.name;workflow.has_changes=false;workflow.stored=true;show_workflow_parameters();if(g.errors){show_modal("Saving workflow",e,{Ok:hide_modal})}else{if(d){d()}hide_modal()}}})};if(active_ajax_call){$(document).bind("ajaxStop.save_workflow",function(){$(document).unbind("ajaxStop.save_workflow");a();$(document).unbind("ajaxStop.save_workflow");active_ajax_call=false})}else{a(c)}}; \ No newline at end of file https://bitbucket.org/galaxy/galaxy-central/commits/1d09105e1cad/ Changeset: 1d09105e1cad User: dannon Date: 2014-07-10 20:36:15 Summary: Include link to wiki explaining rename syntax. Affected #: 1 file diff -r 21fed77e18f88ae64023afe5c64fc9866270bde8 -r 1d09105e1cade84ebacfe48ef4739266f3f073ca lib/galaxy/jobs/actions/post.py --- a/lib/galaxy/jobs/actions/post.py +++ b/lib/galaxy/jobs/actions/post.py @@ -225,7 +225,7 @@ p_str += "No inputs are available for templating into this action."; } """ - return get_form_template(cls.name, cls.verbose_name, form, "This action will rename the result dataset.") + return get_form_template(cls.name, cls.verbose_name, form, "This action will rename the result dataset. See <a href='https://wiki.galaxyproject.org/Learn/AdvancedWorkflow/Variables'>the wiki</a> for usage information.") @classmethod def get_short_str(cls, pja): Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: dan: 1.) Enhance set_metadata scripts to be able to handle metadata declared by tools for both regular declared outputs and new primary output datasets using JSON.
by commits-noreply＠bitbucket.org 10 Jul '14

10 Jul '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/c713d035edff/ Changeset: c713d035edff User: dan Date: 2014-07-10 18:09:50 Summary: 1.) Enhance set_metadata scripts to be able to handle metadata declared by tools for both regular declared outputs and new primary output datasets using JSON. 2.) Enhance collect_primary_datasets to allow tools to provide extra_files. Affected #: 3 files diff -r cef33a0617405e7b3f25c79955890c72e69dc14b -r c713d035edff866476384a47ab25410d9a271b54 lib/galaxy/datatypes/metadata.py --- a/lib/galaxy/datatypes/metadata.py +++ b/lib/galaxy/datatypes/metadata.py @@ -126,10 +126,21 @@ rval[key] = self.spec[key].param.make_copy( value, target_context=self, source_context=to_copy ) return rval - def from_JSON_dict( self, filename, path_rewriter=None ): + def from_JSON_dict( self, filename=None, path_rewriter=None, json_dict=None ): dataset = self.parent - log.debug( 'loading metadata from file for: %s %s' % ( dataset.__class__.__name__, dataset.id ) ) - JSONified_dict = json.load( open( filename ) ) + if filename is not None: + log.debug( 'loading metadata from file for: %s %s' % ( dataset.__class__.__name__, dataset.id ) ) + JSONified_dict = json.load( open( filename ) ) + elif json_dict is not None: + log.debug( 'loading metadata from dict for: %s %s' % ( dataset.__class__.__name__, dataset.id ) ) + if isinstance( json_dict, basestring ): + JSONified_dict = json.loads( json_dict ) + elif isinstance( json_dict, dict ): + JSONified_dict = json_dict + else: + raise ValueError( "json_dict must be either a dictionary or a string, got %s." % ( type( json_dict ) ) ) + else: + raise ValueError( "You must provide either a filename or a json_dict" ) for name, spec in self.spec.items(): if name in JSONified_dict: from_ext_kwds = {} @@ -143,13 +154,15 @@ #metadata associated with our dataset, we'll delete it from our dataset's metadata dict del dataset._metadata[ name ] - def to_JSON_dict( self, filename ): + def to_JSON_dict( self, filename=None ): #galaxy.model.customtypes.json_encoder.encode() meta_dict = {} dataset_meta_dict = self.parent._metadata for name, spec in self.spec.items(): if name in dataset_meta_dict: meta_dict[ name ] = spec.param.to_external_value( dataset_meta_dict[ name ] ) + if filename is None: + return json.dumps( meta_dict ) json.dump( meta_dict, open( filename, 'wb+' ) ) def __getstate__( self ): diff -r cef33a0617405e7b3f25c79955890c72e69dc14b -r c713d035edff866476384a47ab25410d9a271b54 lib/galaxy/tools/parameters/output_collect.py --- a/lib/galaxy/tools/parameters/output_collect.py +++ b/lib/galaxy/tools/parameters/output_collect.py @@ -100,13 +100,36 @@ sa_session.flush() primary_data.state = outdata.state #add tool/metadata provided information - new_primary_datasets_attributes = new_primary_datasets.get( os.path.split( filename )[-1] ) + new_primary_datasets_attributes = new_primary_datasets.get( os.path.split( filename )[-1], {} ) if new_primary_datasets_attributes: dataset_att_by_name = dict( ext='extension' ) for att_set in [ 'name', 'info', 'ext', 'dbkey' ]: dataset_att_name = dataset_att_by_name.get( att_set, att_set ) setattr( primary_data, dataset_att_name, new_primary_datasets_attributes.get( att_set, getattr( primary_data, dataset_att_name ) ) ) - primary_data.set_meta() + extra_files_path = new_primary_datasets_attributes.get( 'extra_files', None ) + if extra_files_path: + extra_files_path_joined = os.path.join( job_working_directory, extra_files_path ) + for root, dirs, files in os.walk( extra_files_path_joined ): + extra_dir = os.path.join( primary_data.extra_files_path, root.replace( extra_files_path_joined, '', 1 ).lstrip( os.path.sep ) ) + for f in files: + app.object_store.update_from_file( primary_data.dataset, + extra_dir=extra_dir, + alt_name=f, + file_name=os.path.join( root, f ), + create=True, + dir_only=True, + preserve_symlinks=True + ) + # FIXME: + # since these are placed into the job working dir, let the standard + # Galaxy cleanup methods handle this (for now?) + # there was an extra_files_path dir, attempt to remove it + #shutil.rmtree( extra_files_path_joined ) + metadata_dict = new_primary_datasets_attributes.get( 'metadata', None ) + if metadata_dict: + primary_data.metadata.from_JSON_dict( json_dict=metadata_dict ) + else: + primary_data.set_meta() primary_data.set_peek() sa_session.add( primary_data ) sa_session.flush() diff -r cef33a0617405e7b3f25c79955890c72e69dc14b -r c713d035edff866476384a47ab25410d9a271b54 scripts/set_metadata.py --- a/scripts/set_metadata.py +++ b/scripts/set_metadata.py @@ -31,16 +31,27 @@ import galaxy.model.mapping # need to load this before we unpickle, in order to setup properties assigned by the mappers galaxy.model.Job() # this looks REAL stupid, but it is REQUIRED in order for SA to insert parameters into the classes defined by the mappers --> it appears that instantiating ANY mapper'ed class would suffice here from galaxy.util import stringify_dictionary_keys -from galaxy.util.json import from_json_string from sqlalchemy.orm import clear_mappers from galaxy.objectstore import build_object_store_from_config from galaxy import config import ConfigParser +def set_meta_with_tool_provided( dataset_instance, file_dict, set_meta_kwds ): + # This method is somewhat odd, in that we set the metadata attributes from tool, + # then call set_meta, then set metadata attributes from tool again. + # This is intentional due to interplay of overwrite kwd, the fact that some metadata + # parameters may rely on the values of others, and that we are accepting the + # values provided by the tool as Truth. + for metadata_name, metadata_value in file_dict.get( 'metadata', {} ).iteritems(): + setattr( dataset_instance.metadata, metadata_name, metadata_value ) + dataset_instance.datatype.set_meta( dataset_instance, **set_meta_kwds ) + for metadata_name, metadata_value in file_dict.get( 'metadata', {} ).iteritems(): + setattr( dataset_instance.metadata, metadata_name, metadata_value ) + def __main__(): file_path = sys.argv.pop( 1 ) - tmp_dir = sys.argv.pop( 1 ) + tool_job_working_directory = tmp_dir = sys.argv.pop( 1 ) #this is also the job_working_directory now galaxy.model.Dataset.file_path = file_path galaxy.datatypes.metadata.MetadataTempFile.tmp_dir = tmp_dir @@ -77,15 +88,19 @@ galaxy.model.set_datatypes_registry( datatypes_registry ) job_metadata = sys.argv.pop( 1 ) - ext_override = dict() + existing_job_metadata_dict = {} + new_job_metadata_dict = {} if job_metadata != "None" and os.path.exists( job_metadata ): for line in open( job_metadata, 'r' ): try: - line = stringify_dictionary_keys( from_json_string( line ) ) - assert line['type'] == 'dataset' - ext_override[line['dataset_id']] = line['ext'] + line = stringify_dictionary_keys( json.loads( line ) ) + if line['type'] == 'dataset': + existing_job_metadata_dict[ line['dataset_id'] ] = line + elif line['type'] == 'new_primary_dataset': + new_job_metadata_dict[ line[ 'filename' ] ] = line except: continue + for filenames in sys.argv[1:]: fields = filenames.split( ',' ) filename_in = fields.pop( 0 ) @@ -100,12 +115,13 @@ override_metadata = fields.pop( 0 ) else: override_metadata = None + set_meta_kwds = stringify_dictionary_keys( json.load( open( filename_kwds ) ) ) # load kwds; need to ensure our keywords are not unicode try: dataset = cPickle.load( open( filename_in ) ) # load DatasetInstance if dataset_filename_override: dataset.dataset.external_filename = dataset_filename_override - if ext_override.get( dataset.dataset.id, None ): - dataset.extension = ext_override[ dataset.dataset.id ] + if dataset.dataset.id in existing_job_metadata_dict: + dataset.extension = existing_job_metadata_dict[ dataset.dataset.id ].get( 'ext', dataset.extension ) # Metadata FileParameter types may not be writable on a cluster node, and are therefore temporarily substituted with MetadataTempFiles if override_metadata: override_metadata = json.load( open( override_metadata ) ) @@ -113,12 +129,27 @@ if galaxy.datatypes.metadata.MetadataTempFile.is_JSONified_value( metadata_file_override ): metadata_file_override = galaxy.datatypes.metadata.MetadataTempFile.from_JSON( metadata_file_override ) setattr( dataset.metadata, metadata_name, metadata_file_override ) - kwds = stringify_dictionary_keys( json.load( open( filename_kwds ) ) ) # load kwds; need to ensure our keywords are not unicode - dataset.datatype.set_meta( dataset, **kwds ) + file_dict = existing_job_metadata_dict.get( dataset.dataset.id, {} ) + set_meta_with_tool_provided( dataset, file_dict, set_meta_kwds ) dataset.metadata.to_JSON_dict( filename_out ) # write out results of set_meta json.dump( ( True, 'Metadata has been set successfully' ), open( filename_results_code, 'wb+' ) ) # setting metadata has succeeded except Exception, e: json.dump( ( False, str( e ) ), open( filename_results_code, 'wb+' ) ) # setting metadata has failed somehow + + for i, ( filename, file_dict ) in enumerate( new_job_metadata_dict.iteritems(), start=1 ): + new_dataset = galaxy.model.Dataset( id=-i, external_filename=os.path.join( tool_job_working_directory, file_dict[ 'filename' ] ) ) + extra_files = file_dict.get( 'extra_files', None ) + if extra_files is not None: + new_dataset._extra_files_path = os.path.join( tool_job_working_directory, extra_files ) + new_dataset.state = new_dataset.states.OK + new_dataset_instance = galaxy.model.HistoryDatasetAssociation( id=-i, dataset=new_dataset, extension=file_dict.get( 'ext', 'data' ) ) + set_meta_with_tool_provided( new_dataset_instance, file_dict, set_meta_kwds ) + file_dict[ 'metadata' ] = json.loads( new_dataset_instance.metadata.to_JSON_dict() ) #storing metadata in external form, need to turn back into dict, then later jsonify + if existing_job_metadata_dict or new_job_metadata_dict: + with open( job_metadata, 'wb' ) as job_metadata_fh: + for value in existing_job_metadata_dict.values() + new_job_metadata_dict.values(): + job_metadata_fh.write( "%s\n" % ( json.dumps( value ) ) ) + clear_mappers() # Shut down any additional threads that might have been created via the ObjectStore object_store.shutdown() Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: carlfeberhard: History panel: refactor hda/collection views; pack scripts
by commits-noreply＠bitbucket.org 10 Jul '14

10 Jul '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/cef33a061740/ Changeset: cef33a061740 User: carlfeberhard Date: 2014-07-10 17:15:30 Summary: History panel: refactor hda/collection views; pack scripts Affected #: 13 files diff -r 65ec063664eb0ce100d76d985fba93f200ac5178 -r cef33a0617405e7b3f25c79955890c72e69dc14b static/scripts/mvc/collection/dataset-collection-base.js --- a/static/scripts/mvc/collection/dataset-collection-base.js +++ b/static/scripts/mvc/collection/dataset-collection-base.js @@ -1,7 +1,7 @@ define([ - "mvc/dataset/hda-model", - "mvc/dataset/hda-base" -], function( hdaModel, hdaBase ){ + "mvc/history/history-content-base-view", + "utils/localization" +], function( historyContentBaseView, _l ){ /* global Backbone, LoggableMixin */ //============================================================================== /** @class Read only view for HistoryDatasetCollectionAssociation. @@ -12,10 +12,11 @@ * @borrows LoggableMixin#log as #log * @constructs */ -var DatasetCollectionBaseView = hdaBase.HistoryContentBaseView.extend({ +var DatasetCollectionBaseView = historyContentBaseView.HistoryContentBaseView.extend({ className : "dataset hda history-panel-hda", id : function(){ return 'hdca-' + this.model.get( 'id' ); }, + /** */ initialize : function( attributes ){ if( attributes.logger ){ this.logger = this.model.logger = attributes.logger; } this.log( this + '.initialize:', attributes ); @@ -28,6 +29,7 @@ this.expanded = attributes.expanded || false; }, + /** */ render : function( fade ){ var $newRender = this._buildNewRender(); @@ -35,53 +37,47 @@ return this; }, - // main template for folder browsing - templateSkeleton : function (){ - return [ - '<div class="dataset hda">', - '<div class="dataset-warnings">', - '<% if ( deleted ) { %>', - '<div class="dataset-deleted-msg warningmessagesmall"><strong>', - _l( 'This dataset has been deleted.' ), - '</div>', - '<% } %>', - '<% if ( ! visible ) { %>', - '<div class="dataset-hidden-msg warningmessagesmall"><strong>', - _l( 'This dataset has been hidden.' ), - '</div>', - '<% } %>', - '</div>', - '<div class="dataset-selector"><span class="fa fa-2x fa-square-o"></span></div>', - '<div class="dataset-primary-actions"></div>', - '<div class="dataset-title-bar clear" tabindex="0">', - '<span class="dataset-state-icon state-icon"></span>', - '<div class="dataset-title">', - '<span class="hda-hid"><%= hid %></span> ', - '<span class="dataset-name"><%= name %></span>', - '</div>', - '</div>', - '<div class="dataset-body"></div>', - '</div>' - ].join( '' ); - }, - - templateBody : function() { - return [ - '<div class="dataset-body">', - '<div class="dataset-summary">', - 'A dataset collection.', - '</div>' - ].join( '' ); - }, - + /** */ _buildNewRender : function(){ - var $newRender = $( _.template(this.templateSkeleton(), this.model.toJSON() ) ); + var $newRender = $( DatasetCollectionBaseView.templates.skeleton( this.model.toJSON() ) ); $newRender.find( '.dataset-primary-actions' ).append( this._render_titleButtons() ); $newRender.children( '.dataset-body' ).replaceWith( this._render_body() ); this._setUpBehaviors( $newRender ); return $newRender; }, + /** */ + _queueNewRender : function( $newRender, fade ) { + fade = ( fade === undefined )?( true ):( fade ); + var view = this; + + // fade the old render out (if desired) + if( fade ){ + $( view ).queue( function( next ){ this.$el.fadeOut( view.fxSpeed, next ); }); + } + // empty the old render, update to any new HDA state, swap in the new render contents, handle multi-select + $( view ).queue( function( next ){ + this.$el.empty() + .attr( 'class', view.className ).addClass( 'state-' + view.model.get( 'state' ) ) + .append( $newRender.children() ); + if( this.selectable ){ this.showSelector( 0 ); } + next(); + }); + // fade the new in + if( fade ){ + $( view ).queue( function( next ){ this.$el.fadeIn( view.fxSpeed, next ); }); + } + // trigger an event to know we're ready + $( view ).queue( function( next ){ + this.trigger( 'rendered', view ); + if( this.model.inReadyState() ){ + this.trigger( 'rendered:ready', view ); + } + if( this.draggable ){ this.draggableOn(); } + next(); + }); + }, + // ................................................................................ titlebar buttons /** Render icon-button group for the common, most easily accessed actions. * @returns {jQuery} rendered DOM @@ -134,6 +130,31 @@ 'click .dataset-selector' : 'toggleSelect' }, + /** Show or hide the body/details of history content. + * note: if the model does not have detailed data, fetch that data before showing the body + * @param {Event} event the event that triggered this (@link HDABaseView#events) + * @param {Boolean} expanded if true, expand; if false, collapse + * @fires body-expanded when a body has been expanded + * @fires body-collapsed when a body has been collapsed + */ + toggleBodyVisibility : function( event, expand ){ + // bail (with propagation) if keydown and not space or enter + var KEYCODE_SPACE = 32, KEYCODE_RETURN = 13; + if( event && ( event.type === 'keydown' ) + && !( event.keyCode === KEYCODE_SPACE || event.keyCode === KEYCODE_RETURN ) ){ + return true; + } + + var $body = this.$el.find( '.dataset-body' ); + expand = ( expand === undefined )?( !$body.is( ':visible' ) ):( expand ); + if( expand ){ + this.expandBody(); + } else { + this.collapseBody(); + } + return false; + }, + /** Render and show the full, detailed body of this view including extra data and controls. * @fires body-expanded when a body has been expanded */ @@ -162,13 +183,12 @@ }); }, - /** Render an 'ok' collection. * @param {jQuery} parent DOM to which to append this body */ _render_body_ok : function(){ // most common state renderer and the most complicated - var $body = $( _.template( this.templateBody(), this.model.toJSON() ) ); + var $body = $( DatasetCollectionBaseView.templates.body( this.model.toJSON() ) ); // return shortened form if del'd (no display apps or peek?) if( this.model.get( 'deleted' ) ){ @@ -176,13 +196,133 @@ } return $body; + }, + + // ......................................................................... selection + /** display a (fa-icon) checkbox on the left of the hda that fires events when checked + * Note: this also hides the primary actions + */ + showSelector : function(){ + // make sure selected state is represented properly + if( this.selected ){ + this.select( null, true ); + } + + this.selectable = true; + this.trigger( 'selectable', true, this ); + + this.$( '.dataset-primary-actions' ).hide(); + this.$( '.dataset-selector' ).show(); + }, + + /** remove the selection checkbox */ + hideSelector : function(){ + // reverse the process from showSelect + this.selectable = false; + this.trigger( 'selectable', false, this ); + + this.$( '.dataset-selector' ).hide(); + this.$( '.dataset-primary-actions' ).show(); + }, + + toggleSelector : function(){ + if( !this.$el.find( '.dataset-selector' ).is( ':visible' ) ){ + this.showSelector(); + } else { + this.hideSelector(); + } + }, + + /** event handler for selection (also programmatic selection) + */ + select : function( event ){ + // switch icon, set selected, and trigger event + this.$el.find( '.dataset-selector span' ) + .removeClass( 'fa-square-o' ).addClass( 'fa-check-square-o' ); + if( !this.selected ){ + this.trigger( 'selected', this, event ); + this.selected = true; + } + return false; + }, + + /** event handler for clearing selection (also programmatic deselection) + */ + deselect : function( event ){ + // switch icon, set selected, and trigger event + this.$el.find( '.dataset-selector span' ) + .removeClass( 'fa-check-square-o' ).addClass( 'fa-square-o' ); + if( this.selected ){ + this.trigger( 'de-selected', this, event ); + this.selected = false; + } + return false; + }, + + toggleSelect : function( event ){ + if( this.selected ){ + this.deselect( event ); + } else { + this.select( event ); + } + }, + + // ......................................................................... misc + /** String representation */ + toString : function(){ + var modelString = ( this.model )?( this.model + '' ):( '(no model)' ); + return 'HDCABaseView(' + modelString + ')'; } - }); -//============================================================================== -return { - DatasetCollectionBaseView : DatasetCollectionBaseView +//------------------------------------------------------------------------------ TEMPLATES +//TODO: possibly break these out into a sep. module +var skeletonTemplate = _.template([ + '<div class="dataset hda">', + '<div class="dataset-warnings">', + '<% if ( collection.deleted ) { %>', + '<div class="dataset-deleted-msg warningmessagesmall"><strong>', + _l( 'This collection has been deleted.' ), + '</div>', + '<% } %>', + '<% if ( !collection.visible ) { %>', + '<div class="dataset-hidden-msg warningmessagesmall"><strong>', + _l( 'This collection has been hidden.' ), + '</div>', + '<% } %>', + '</div>', + '<div class="dataset-selector"><span class="fa fa-2x fa-square-o"></span></div>', + '<div class="dataset-primary-actions"></div>', + '<div class="dataset-title-bar clear" tabindex="0">', + '<span class="dataset-state-icon state-icon"></span>', + '<div class="dataset-title">', + '<span class="hda-hid"><%= collection.hid %></span> ', + '<span class="dataset-name"><%= collection.name %></span>', + '</div>', + '</div>', + '<div class="dataset-body"></div>', + '</div>' +].join( '' )); + +var bodyTemplate = _.template([ + '<div class="dataset-body">', + '<div class="dataset-summary">', + _l( 'A dataset collection.' ), + '</div>' +].join( '' )); + +DatasetCollectionBaseView.templates = { + // we override here in order to pass the localizer (_L) into the template scope - since we use it as a fn within + skeleton : function( collectionJSON ){ + return skeletonTemplate({ _l: _l, collection: collectionJSON }); + }, + body : function( collectionJSON ){ + return bodyTemplate({ _l: _l, collection: collectionJSON }); + } }; +//============================================================================== + return { + DatasetCollectionBaseView : DatasetCollectionBaseView + }; }); diff -r 65ec063664eb0ce100d76d985fba93f200ac5178 -r cef33a0617405e7b3f25c79955890c72e69dc14b static/scripts/mvc/collection/dataset-collection-edit.js --- a/static/scripts/mvc/collection/dataset-collection-edit.js +++ b/static/scripts/mvc/collection/dataset-collection-edit.js @@ -1,7 +1,8 @@ define([ "mvc/dataset/hda-model", "mvc/collection/dataset-collection-base", -], function( hdaModel, datasetCollectionBase ){ + "utils/localization" +], function( hdaModel, datasetCollectionBase, _l ){ //============================================================================== /** @class Editing view for HistoryDatasetCollectionAssociation. * @name DatasetCollectionEditView @@ -57,13 +58,18 @@ } deleteBtnData.faIcon = 'fa-times'; return faIconButton( deleteBtnData ); + }, + + // ......................................................................... misc + /** string rep */ + toString : function(){ + var modelString = ( this.model )?( this.model + '' ):( '(no model)' ); + return 'HDCAEditView(' + modelString + ')'; } - }); //============================================================================== -return { - DatasetCollectionEditView : DatasetCollectionEditView -}; - + return { + DatasetCollectionEditView : DatasetCollectionEditView + }; }); diff -r 65ec063664eb0ce100d76d985fba93f200ac5178 -r cef33a0617405e7b3f25c79955890c72e69dc14b static/scripts/mvc/dataset/hda-base.js --- a/static/scripts/mvc/dataset/hda-base.js +++ b/static/scripts/mvc/dataset/hda-base.js @@ -1,152 +1,10 @@ define([ "mvc/dataset/hda-model", - "mvc/base-mvc", + "mvc/history/history-content-base-view", "mvc/data", "utils/localization" -], function( hdaModel, baseMVC, dataset, _l ){ +], function( hdaModel, historyContentBaseView, dataset, _l ){ /* global Backbone */ - -/** @class Read only view for history content views to extend. - * @name HistoryContentBaseView - * - * @augments Backbone.View - * @borrows LoggableMixin#logger as #logger - * @borrows LoggableMixin#log as #log - * @constructs - */ -var HistoryContentBaseView = Backbone.View.extend( baseMVC.LoggableMixin ).extend( -/** @lends HistoryContentBaseView.prototype */{ - tagName : "div", - fxSpeed : 'fast', - - _queueNewRender : function( $newRender, fade ) { - fade = ( fade === undefined )?( true ):( fade ); - var view = this; - - // fade the old render out (if desired) - if( fade ){ - $( view ).queue( function( next ){ this.$el.fadeOut( view.fxSpeed, next ); }); - } - // empty the old render, update to any new HDA state, swap in the new render contents, handle multi-select - $( view ).queue( function( next ){ - this.$el.empty() - .attr( 'class', view.className ).addClass( 'state-' + view.model.get( 'state' ) ) - .append( $newRender.children() ); - if( this.selectable ){ this.showSelector( 0 ); } - next(); - }); - // fade the new in - if( fade ){ - $( view ).queue( function( next ){ this.$el.fadeIn( view.fxSpeed, next ); }); - } - // trigger an event to know we're ready - $( view ).queue( function( next ){ - this.trigger( 'rendered', view ); - if( this.model.inReadyState() ){ - this.trigger( 'rendered:ready', view ); - } - if( this.draggable ){ this.draggableOn(); } - next(); - }); - }, - - /** Show or hide the body/details of history content. - * note: if the model does not have detailed data, fetch that data before showing the body - * @param {Event} event the event that triggered this (@link HDABaseView#events) - * @param {Boolean} expanded if true, expand; if false, collapse - * @fires body-expanded when a body has been expanded - * @fires body-collapsed when a body has been collapsed - */ - toggleBodyVisibility : function( event, expand ){ - // bail (with propagation) if keydown and not space or enter - var KEYCODE_SPACE = 32, KEYCODE_RETURN = 13; - if( event && ( event.type === 'keydown' ) - && !( event.keyCode === KEYCODE_SPACE || event.keyCode === KEYCODE_RETURN ) ){ - return true; - } - - var $body = this.$el.find( '.dataset-body' ); - expand = ( expand === undefined )?( !$body.is( ':visible' ) ):( expand ); - if( expand ){ - this.expandBody(); - } else { - this.collapseBody(); - } - return false; - }, - - // ......................................................................... selection - /** display a (fa-icon) checkbox on the left of the hda that fires events when checked - * Note: this also hides the primary actions - */ - showSelector : function(){ - // make sure selected state is represented properly - if( this.selected ){ - this.select( null, true ); - } - - this.selectable = true; - this.trigger( 'selectable', true, this ); - - this.$( '.dataset-primary-actions' ).hide(); - this.$( '.dataset-selector' ).show(); - }, - - /** remove the selection checkbox */ - hideSelector : function(){ - // reverse the process from showSelect - this.selectable = false; - this.trigger( 'selectable', false, this ); - - this.$( '.dataset-selector' ).hide(); - this.$( '.dataset-primary-actions' ).show(); - }, - - toggleSelector : function(){ - if( !this.$el.find( '.dataset-selector' ).is( ':visible' ) ){ - this.showSelector(); - } else { - this.hideSelector(); - } - }, - - /** event handler for selection (also programmatic selection) - */ - select : function( event ){ - // switch icon, set selected, and trigger event - this.$el.find( '.dataset-selector span' ) - .removeClass( 'fa-square-o' ).addClass( 'fa-check-square-o' ); - if( !this.selected ){ - this.trigger( 'selected', this, event ); - this.selected = true; - } - return false; - }, - - /** event handler for clearing selection (also programmatic deselection) - */ - deselect : function( event ){ - // switch icon, set selected, and trigger event - this.$el.find( '.dataset-selector span' ) - .removeClass( 'fa-check-square-o' ).addClass( 'fa-square-o' ); - if( this.selected ){ - this.trigger( 'de-selected', this, event ); - this.selected = false; - } - return false; - }, - - toggleSelect : function( event ){ - if( this.selected ){ - this.deselect( event ); - } else { - this.select( event ); - } - } - -}); - - //============================================================================== /** @class Read only view for HistoryDatasetAssociation. * @name HDABaseView @@ -156,16 +14,19 @@ * @borrows LoggableMixin#log as #log * @constructs */ -var HDABaseView = HistoryContentBaseView.extend( +var HDABaseView = historyContentBaseView.HistoryContentBaseView.extend( /** @lends HDABaseView.prototype */{ ///** logger used to record this.log messages, commonly set to console */ //// comment this out to suppress log output //logger : console, + tagName : "div", className : "dataset hda history-panel-hda", id : function(){ return 'hda-' + this.model.get( 'id' ); }, + fxSpeed : 'fast', + // ......................................................................... set up /** Set up the view, cache url templates, bind listeners * @param {Object} attributes @@ -253,6 +114,37 @@ return $newRender; }, + _queueNewRender : function( $newRender, fade ) { + fade = ( fade === undefined )?( true ):( fade ); + var view = this; + + // fade the old render out (if desired) + if( fade ){ + $( view ).queue( function( next ){ this.$el.fadeOut( view.fxSpeed, next ); }); + } + // empty the old render, update to any new HDA state, swap in the new render contents, handle multi-select + $( view ).queue( function( next ){ + this.$el.empty() + .attr( 'class', view.className ).addClass( 'state-' + view.model.get( 'state' ) ) + .append( $newRender.children() ); + if( this.selectable ){ this.showSelector( 0 ); } + next(); + }); + // fade the new in + if( fade ){ + $( view ).queue( function( next ){ this.$el.fadeIn( view.fxSpeed, next ); }); + } + // trigger an event to know we're ready + $( view ).queue( function( next ){ + this.trigger( 'rendered', view ); + if( this.model.inReadyState() ){ + this.trigger( 'rendered:ready', view ); + } + if( this.draggable ){ this.draggableOn(); } + next(); + }); + }, + /** set up js behaviors, event handlers for elements within the given container * @param {jQuery} $container jq object that contains the elements to process (defaults to this.$el) */ @@ -316,11 +208,11 @@ if( Galaxy.frame && Galaxy.frame.active ){ // Create frame with TabularChunkedView. Galaxy.frame.add({ - title : "Data Viewer: " + self.model.get('name'), + title : "Data Viewer: " + self.model.get( 'name' ), type : "other", - content : function(parent_elt) { - var new_dataset = new dataset.TabularDataset({id: self.model.get('id')}); - $.when(new_dataset.fetch()).then(function() { + content : function( parent_elt ){ + var new_dataset = new dataset.TabularDataset({ id: self.model.get( 'id' ) }); + $.when( new_dataset.fetch() ).then( function(){ dataset.createTabularDatasetChunkedView({ model: new_dataset, parent_elt: parent_elt, @@ -558,6 +450,31 @@ 'click .dataset-selector' : 'toggleSelect' }, + /** Show or hide the body/details of history content. + * note: if the model does not have detailed data, fetch that data before showing the body + * @param {Event} event the event that triggered this (@link HDABaseView#events) + * @param {Boolean} expanded if true, expand; if false, collapse + * @fires body-expanded when a body has been expanded + * @fires body-collapsed when a body has been collapsed + */ + toggleBodyVisibility : function( event, expand ){ + // bail (with propagation) if keydown and not space or enter + var KEYCODE_SPACE = 32, KEYCODE_RETURN = 13; + if( event && ( event.type === 'keydown' ) + && !( event.keyCode === KEYCODE_SPACE || event.keyCode === KEYCODE_RETURN ) ){ + return true; + } + + var $body = this.$el.find( '.dataset-body' ); + expand = ( expand === undefined )?( !$body.is( ':visible' ) ):( expand ); + if( expand ){ + this.expandBody(); + } else { + this.collapseBody(); + } + return false; + }, + /** Render and show the full, detailed body of this view including extra data and controls. * @fires body-expanded when a body has been expanded */ @@ -599,6 +516,75 @@ }); }, + // ......................................................................... selection + /** display a (fa-icon) checkbox on the left of the hda that fires events when checked + * Note: this also hides the primary actions + */ + showSelector : function(){ + // make sure selected state is represented properly + if( this.selected ){ + this.select( null, true ); + } + + this.selectable = true; + this.trigger( 'selectable', true, this ); + + this.$( '.dataset-primary-actions' ).hide(); + this.$( '.dataset-selector' ).show(); + }, + + /** remove the selection checkbox */ + hideSelector : function(){ + // reverse the process from showSelect + this.selectable = false; + this.trigger( 'selectable', false, this ); + + this.$( '.dataset-selector' ).hide(); + this.$( '.dataset-primary-actions' ).show(); + }, + + toggleSelector : function(){ + if( !this.$el.find( '.dataset-selector' ).is( ':visible' ) ){ + this.showSelector(); + } else { + this.hideSelector(); + } + }, + + /** event handler for selection (also programmatic selection) + */ + select : function( event ){ + // switch icon, set selected, and trigger event + this.$el.find( '.dataset-selector span' ) + .removeClass( 'fa-square-o' ).addClass( 'fa-check-square-o' ); + if( !this.selected ){ + this.trigger( 'selected', this, event ); + this.selected = true; + } + return false; + }, + + /** event handler for clearing selection (also programmatic deselection) + */ + deselect : function( event ){ + // switch icon, set selected, and trigger event + this.$el.find( '.dataset-selector span' ) + .removeClass( 'fa-check-square-o' ).addClass( 'fa-square-o' ); + if( this.selected ){ + this.trigger( 'de-selected', this, event ); + this.selected = false; + } + return false; + }, + + toggleSelect : function( event ){ + if( this.selected ){ + this.deselect( event ); + } else { + this.select( event ); + } + }, + // ......................................................................... drag/drop draggableOn : function(){ this.draggable = true; @@ -824,7 +810,7 @@ }; //============================================================================== -return { - HistoryContentBaseView : HistoryContentBaseView, - HDABaseView : HDABaseView -};}); + return { + HDABaseView : HDABaseView + }; +}); diff -r 65ec063664eb0ce100d76d985fba93f200ac5178 -r cef33a0617405e7b3f25c79955890c72e69dc14b static/scripts/mvc/dataset/hda-edit.js --- a/static/scripts/mvc/dataset/hda-edit.js +++ b/static/scripts/mvc/dataset/hda-edit.js @@ -423,7 +423,7 @@ /** string rep */ toString : function(){ var modelString = ( this.model )?( this.model + '' ):( '(no model)' ); - return 'HDAView(' + modelString + ')'; + return 'HDAEditView(' + modelString + ')'; } }); @@ -510,6 +510,7 @@ //============================================================================== -return { - HDAEditView : HDAEditView -};}); + return { + HDAEditView : HDAEditView + }; +}); diff -r 65ec063664eb0ce100d76d985fba93f200ac5178 -r cef33a0617405e7b3f25c79955890c72e69dc14b static/scripts/mvc/history/history-content-base-view.js --- /dev/null +++ b/static/scripts/mvc/history/history-content-base-view.js @@ -0,0 +1,26 @@ +define([ + "mvc/base-mvc", + "utils/localization" +], function( baseMVC, _l ){ +/* global Backbone */ +//============================================================================== +/** @class Read only view for history content views to extend. + * @name HistoryContentBaseView + * + * @augments Backbone.View + * @borrows LoggableMixin#logger as #logger + * @borrows LoggableMixin#log as #log + * @constructs + */ +var HistoryContentBaseView = Backbone.View.extend( baseMVC.LoggableMixin ).extend( +/** @lends HistoryContentBaseView.prototype */{ +}); + +//TODO: not sure base view class is warranted or even wise + + +//============================================================================== + return { + HistoryContentBaseView : HistoryContentBaseView + }; +}); diff -r 65ec063664eb0ce100d76d985fba93f200ac5178 -r cef33a0617405e7b3f25c79955890c72e69dc14b static/scripts/packed/galaxy.workflow_editor.canvas.js --- a/static/scripts/packed/galaxy.workflow_editor.canvas.js +++ b/static/scripts/packed/galaxy.workflow_editor.canvas.js @@ -1,1 +1,1 @@ -function CollectionTypeDescription(a){this.collectionType=a;this.isCollection=true;this.rank=a.split(":").length}$.extend(CollectionTypeDescription.prototype,{append:function(a){if(a===NULL_COLLECTION_TYPE_DESCRIPTION){return this}if(a===ANY_COLLECTION_TYPE_DESCRIPTION){return otherCollectionType}return new CollectionTypeDescription(this.collectionType+":"+a.collectionType)},canMatch:function(a){if(a===NULL_COLLECTION_TYPE_DESCRIPTION){return false}if(a===ANY_COLLECTION_TYPE_DESCRIPTION){return true}return a.collectionType==this.collectionType},canMapOver:function(b){if(b===NULL_COLLECTION_TYPE_DESCRIPTION){return false}if(b===ANY_COLLECTION_TYPE_DESCRIPTION){return false}if(this.rank<=b.rank){return false}var a=b.collectionType;return this._endsWith(this.collectionType,a)},effectiveMapOver:function(a){var c=a.collectionType;var b=this.collectionType.substring(0,this.collectionType.length-c.length-1);return new CollectionTypeDescription(b)},equal:function(a){return a.collectionType==this.collectionType},toString:function(){return"CollectionType["+this.collectionType+"]"},_endsWith:function(b,a){return b.indexOf(a,b.length-a.length)!==-1}});NULL_COLLECTION_TYPE_DESCRIPTION={isCollection:false,canMatch:function(a){return false},canMapOver:function(a){return false},toString:function(){return"NullCollectionType[]"},append:function(a){return a},equal:function(a){return a===this}};ANY_COLLECTION_TYPE_DESCRIPTION={isCollection:true,canMatch:function(a){return NULL_COLLECTION_TYPE_DESCRIPTION!==a},canMapOver:function(a){return false},toString:function(){return"AnyCollectionType[]"},append:function(a){throw"Cannot append to ANY_COLLECTION_TYPE_DESCRIPTION"},equal:function(a){return a===this}};var TerminalMapping=Backbone.Model.extend({initialize:function(a){this.mapOver=a.mapOver||NULL_COLLECTION_TYPE_DESCRIPTION;this.terminal=a.terminal;this.terminal.terminalMapping=this},disableMapOver:function(){this.setMapOver(NULL_COLLECTION_TYPE_DESCRIPTION)},setMapOver:function(a){this.mapOver=a;this.trigger("change")}});var TerminalMappingView=Backbone.View.extend({tagName:"div",className:"fa-icon-button fa fa-folder-o",initialize:function(b){var a="Run tool in parallel over collection";this.$el.tooltip({delay:500,title:a});this.model.bind("change",_.bind(this.render,this))},render:function(){if(this.model.mapOver.isCollection){this.$el.show()}else{this.$el.hide()}},});var InputTerminalMappingView=TerminalMappingView.extend({events:{click:"onClick",mouseenter:"onMouseEnter",mouseleave:"onMouseLeave",},onMouseEnter:function(b){var a=this.model;if(!a.terminal.connected()&&a.mapOver.isCollection){this.$el.css("color","red")}},onMouseLeave:function(a){this.$el.css("color","black")},onClick:function(b){var a=this.model;if(!a.terminal.connected()&&a.mapOver.isCollection){a.terminal.resetMapping()}},});var InputTerminalMapping=TerminalMapping;var InputCollectionTerminalMapping=TerminalMapping;var OutputTerminalMapping=TerminalMapping;var OutputTerminalMappingView=TerminalMappingView;var InputCollectionTerminalMappingView=InputTerminalMappingView;var OutputCollectionTerminalMapping=TerminalMapping;var OutputCollectionTerminalMappingView=TerminalMappingView;var Terminal=Backbone.Model.extend({initialize:function(a){this.element=a.element;this.connectors=[]},connect:function(a){this.connectors.push(a);if(this.node){this.node.markChanged()}},disconnect:function(a){this.connectors.splice($.inArray(a,this.connectors),1);if(this.node){this.node.markChanged();this.resetMappingIfNeeded()}},redraw:function(){$.each(this.connectors,function(a,b){b.redraw()})},destroy:function(){$.each(this.connectors.slice(),function(a,b){b.destroy()})},destroyInvalidConnections:function(){_.each(this.connectors,function(a){a.destroyIfInvalid()})},setMapOver:function(a){if(this.multiple){return}if(!this.mapOver().equal(a)){this.terminalMapping.setMapOver(a);_.each(this.node.output_terminals,function(b){b.setMapOver(a)})}},mapOver:function(){if(!this.terminalMapping){return NULL_COLLECTION_TYPE_DESCRIPTION}else{return this.terminalMapping.mapOver}},isMappedOver:function(){return this.terminalMapping&&this.terminalMapping.mapOver.isCollection},resetMapping:function(){this.terminalMapping.disableMapOver()},resetMappingIfNeeded:function(){},});var OutputTerminal=Terminal.extend({initialize:function(a){Terminal.prototype.initialize.call(this,a);this.datatypes=a.datatypes},resetMappingIfNeeded:function(){if(!this.node.hasConnectedOutputTerminals()&&!this.node.hasConnectedMappedInputTerminals()){_.each(this.node.mappedInputTerminals(),function(b){b.resetMappingIfNeeded()})}var a=!this.node.hasMappedOverInputTerminals();if(a){this.resetMapping()}},resetMapping:function(){this.terminalMapping.disableMapOver();_.each(this.connectors,function(a){var b=a.handle2;if(b){b.resetMappingIfNeeded();a.destroyIfInvalid()}})}});var BaseInputTerminal=Terminal.extend({initialize:function(a){Terminal.prototype.initialize.call(this,a);this.update(a.input)},canAccept:function(a){if(this._inputFilled()){return false}else{return this.attachable(a)}},resetMappingIfNeeded:function(){var b=this.mapOver();if(!b.isCollection){return}var a=this.node.hasConnectedMappedInputTerminals()||(!this.node.hasConnectedOutputTerminals());if(a){this.resetMapping()}},resetMapping:function(){this.terminalMapping.disableMapOver();if(!this.node.hasMappedOverInputTerminals()){_.each(this.node.output_terminals,function(a){a.resetMapping()})}},connected:function(){return this.connectors.length!==0},_inputFilled:function(){var a;if(!this.connected()){a=false}else{if(this.multiple){if(!this.connected()){a=false}else{var b=this.connectors[0].handle1;if(b===null){a=false}else{if(b.isDataCollectionInput||b.isMappedOver()||b.datatypes.indexOf("input_collection")>0){a=true}else{a=false}}}}else{a=true}}return a},_mappingConstraints:function(){if(!this.node){return[]}var b=this.mapOver();if(b.isCollection){return[b]}var a=[];if(!this.node.hasConnectedOutputTerminals()){_.each(this.node.connectedMappedInputTerminals(),function(c){a.push(c.mapOver())})}else{a.push(_.first(_.values(this.node.output_terminals)).mapOver())}return a},_producesAcceptableDatatype:function(a){for(var c in this.datatypes){var f=new Array();f=f.concat(a.datatypes);if(a.node.post_job_actions){for(var d in a.node.post_job_actions){var g=a.node.post_job_actions[d];if(g.action_type=="ChangeDatatypeAction"&&(g.output_name==""||g.output_name==a.name)&&g.action_arguments){f.push(g.action_arguments.newtype)}}}for(var b in f){var h=f[b];if(h=="input"||h=="input_collection"||issubtype(f[b],this.datatypes[c])){return true}}}return false},_otherCollectionType:function(a){var c=NULL_COLLECTION_TYPE_DESCRIPTION;if(a.isDataCollectionInput){c=a.collectionType}else{var b=a.mapOver();if(b.isCollection){c=b}}return c},});var InputTerminal=BaseInputTerminal.extend({update:function(a){this.datatypes=a.extensions;this.multiple=a.multiple;this.collection=false},connect:function(a){BaseInputTerminal.prototype.connect.call(this,a);var b=a.handle1;if(!b){return}var c=this._otherCollectionType(b);if(c.isCollection){this.setMapOver(c)}},attachable:function(b){var d=this._otherCollectionType(b);var a=this.mapOver();if(d.isCollection){if(this.multiple){if(this.connected()){return false}if(d.rank==1){return this._producesAcceptableDatatype(b)}else{return false}}if(a.isCollection&&a.canMatch(d)){return this._producesAcceptableDatatype(b)}else{var c=this._mappingConstraints();if(c.every(_.bind(d.canMatch,d))){return this._producesAcceptableDatatype(b)}else{return false}}}else{if(a.isCollection){return false}}return this._producesAcceptableDatatype(b)}});var InputCollectionTerminal=BaseInputTerminal.extend({update:function(a){this.multiple=false;this.collection=true;this.datatypes=a.extensions;if(a.collection_type){this.collectionType=new CollectionTypeDescription(a.collection_type)}else{this.collectionType=ANY_COLLECTION_TYPE_DESCRIPTION}},connect:function(b){BaseInputTerminal.prototype.connect.call(this,b);var a=b.handle1;if(!a){return}var c=this._effectiveMapOver(a);this.setMapOver(c)},_effectiveMapOver:function(a){var b=this.collectionType;var c=this._otherCollectionType(a);if(!b.canMatch(c)){return c.effectiveMapOver(b)}else{return NULL_COLLECTION_TYPE_DESCRIPTION}},_effectiveCollectionType:function(){var b=this.collectionType;var a=this.mapOver();return a.append(b)},attachable:function(b){var g=this._otherCollectionType(b);if(g.isCollection){var f=this._effectiveCollectionType();var a=this.mapOver();if(f.canMatch(g)){return this._producesAcceptableDatatype(b)}else{if(a.isCollection){return false}else{if(g.canMapOver(this.collectionType)){var d=this._effectiveMapOver(b);if(!d.isCollection){return false}var c=this._mappingConstraints();if(c.every(d.canMatch)){return this._producesAcceptableDatatype(b)}}}}}return false}});var OutputCollectionTerminal=Terminal.extend({initialize:function(a){Terminal.prototype.initialize.call(this,a);this.datatypes=a.datatypes;this.collectionType=new CollectionTypeDescription(a.collection_type);this.isDataCollectionInput=true},update:function(a){var b=new CollectionTypeDescription(a.collection_type);if(b.collectionType!=this.collectionType.collectionType){_.each(this.connectors,function(c){c.destroy()})}this.collectionType=b}});function Connector(b,a){this.canvas=null;this.dragging=false;this.inner_color="#FFFFFF";this.outer_color="#D8B365";if(b&&a){this.connect(b,a)}}$.extend(Connector.prototype,{connect:function(b,a){this.handle1=b;if(this.handle1){this.handle1.connect(this)}this.handle2=a;if(this.handle2){this.handle2.connect(this)}},destroy:function(){if(this.handle1){this.handle1.disconnect(this)}if(this.handle2){this.handle2.disconnect(this)}$(this.canvas).remove()},destroyIfInvalid:function(){if(this.handle1&&this.handle2&&!this.handle2.attachable(this.handle1)){this.destroy()}},redraw:function(){var f=$("#canvas-container");if(!this.canvas){this.canvas=document.createElement("canvas");if(window.G_vmlCanvasManager){G_vmlCanvasManager.initElement(this.canvas)}f.append($(this.canvas));if(this.dragging){this.canvas.style.zIndex="300"}}var v=function(c){return $(c).offset().left-f.offset().left};var p=function(c){return $(c).offset().top-f.offset().top};if(!this.handle1||!this.handle2){return}var o=v(this.handle1.element)+5;var n=p(this.handle1.element)+5;var x=v(this.handle2.element)+5;var u=p(this.handle2.element)+5;var k=100;var r=Math.min(o,x);var a=Math.max(o,x);var q=Math.min(n,u);var B=Math.max(n,u);var d=Math.min(Math.max(Math.abs(B-q)/2,100),300);var w=r-k;var A=q-k;var y=a-r+2*k;var s=B-q+2*k;this.canvas.style.left=w+"px";this.canvas.style.top=A+"px";this.canvas.setAttribute("width",y);this.canvas.setAttribute("height",s);o-=w;n-=A;x-=w;u-=A;var z=this.canvas.getContext("2d"),h=null,l=null;var g=1;if(this.handle1&&this.handle1.isMappedOver()){var h=[-6,-3,0,3,6];g=5}else{var h=[0]}if(this.handle2&&this.handle2.isMappedOver()){var l=[-6,-3,0,3,6];g=5}else{var l=[0]}var b=this;for(var t=0;t<g;t++){var m=5,j=7;if(h.length>1||l.length>1){m=1;j=3}b.draw_outlined_curve(o,n,x,u,d,m,j,h[t%h.length],l[t%l.length])}},draw_outlined_curve:function(j,i,l,k,a,b,f,g,d){var g=g||0;var d=d||0;var h=this.canvas.getContext("2d");h.lineCap="round";h.strokeStyle=this.outer_color;h.lineWidth=f;h.beginPath();h.moveTo(j,i+g);h.bezierCurveTo(j+a,i+g,l-a,k+d,l,k+d);h.stroke();h.strokeStyle=this.inner_color;h.lineWidth=b;h.beginPath();h.moveTo(j,i+g);h.bezierCurveTo(j+a,i+g,l-a,k+d,l,k+d);h.stroke()}});var Node=Backbone.Model.extend({initialize:function(a){this.element=a.element;this.input_terminals={};this.output_terminals={};this.tool_errors={}},connectedOutputTerminals:function(){return this._connectedTerminals(this.output_terminals)},_connectedTerminals:function(b){var a=[];$.each(b,function(c,d){if(d.connectors.length>0){a.push(d)}});return a},hasConnectedOutputTerminals:function(){var a=this.output_terminals;for(var b in a){if(a[b].connectors.length>0){return true}}return false},connectedMappedInputTerminals:function(){return this._connectedMappedTerminals(this.input_terminals)},hasConnectedMappedInputTerminals:function(){var c=this.input_terminals;for(var b in c){var a=c[b];if(a.connectors.length>0&&a.isMappedOver()){return true}}return false},_connectedMappedTerminals:function(b){var a=[];$.each(b,function(c,d){var f=d.mapOver();if(f.isCollection){if(d.connectors.length>0){a.push(d)}}});return a},mappedInputTerminals:function(){return this._mappedTerminals(this.input_terminals)},_mappedTerminals:function(b){var a=[];$.each(b,function(c,d){var f=d.mapOver();if(f.isCollection){a.push(d)}});return a},hasMappedOverInputTerminals:function(){var a=false;_.each(this.input_terminals,function(b){var c=b.mapOver();if(c.isCollection){a=true}});return a},redraw:function(){$.each(this.input_terminals,function(a,b){b.redraw()});$.each(this.output_terminals,function(a,b){b.redraw()})},destroy:function(){$.each(this.input_terminals,function(a,b){b.destroy()});$.each(this.output_terminals,function(a,b){b.destroy()});workflow.remove_node(this);$(this.element).remove()},make_active:function(){$(this.element).addClass("toolForm-active")},make_inactive:function(){var a=this.element.get(0);(function(b){b.removeChild(a);b.appendChild(a)})(a.parentNode);$(a).removeClass("toolForm-active")},init_field_data:function(b){if(b.type){this.type=b.type}this.name=b.name;this.form_html=b.form_html;this.tool_state=b.tool_state;this.tool_errors=b.tool_errors;this.tooltip=b.tooltip?b.tooltip:"";this.annotation=b.annotation;this.post_job_actions=b.post_job_actions?b.post_job_actions:{};this.workflow_outputs=b.workflow_outputs?b.workflow_outputs:[];var a=this;var c=new NodeView({el:this.element[0],node:a,});a.nodeView=c;$.each(b.data_inputs,function(f,d){c.addDataInput(d)});if((b.data_inputs.length>0)&&(b.data_outputs.length>0)){c.addRule()}$.each(b.data_outputs,function(f,d){c.addDataOutput(d)});c.render();workflow.node_changed(this)},update_field_data:function(d){var c=this;nodeView=c.nodeView;this.tool_state=d.tool_state;this.form_html=d.form_html;this.tool_errors=d.tool_errors;this.annotation=d.annotation;if("post_job_actions" in d){var f=$.parseJSON(d.post_job_actions);this.post_job_actions=f?f:{}}c.nodeView.renderToolErrors();var g=nodeView.$("div.inputs");var a=nodeView.newInputsDiv();var b={};_.each(d.data_inputs,function(h){var i=c.nodeView.addDataInput(h,a);b[h.name]=i});_.each(_.difference(_.values(nodeView.terminalViews),_.values(b)),function(h){h.el.terminal.destroy()});nodeView.terminalViews=b;if(d.data_outputs.length==1&&"collection_type" in d.data_outputs[0]){nodeView.updateDataOutput(d.data_outputs[0])}g.replaceWith(a);this.markChanged();this.redraw()},error:function(d){var a=$(this.element).find(".toolFormBody");a.find("div").remove();var c="<div style='color: red; text-style: italic;'>"+d+"</div>";this.form_html=c;a.html(c);workflow.node_changed(this)},markChanged:function(){workflow.node_changed(this)}});function Workflow(a){this.canvas_container=a;this.id_counter=0;this.nodes={};this.name=null;this.has_changes=false;this.active_form_has_changes=false}$.extend(Workflow.prototype,{add_node:function(a){a.id=this.id_counter;a.element.attr("id","wf-node-step-"+a.id);this.id_counter++;this.nodes[a.id]=a;this.has_changes=true;a.workflow=this},remove_node:function(a){if(this.active_node==a){this.clear_active_node()}delete this.nodes[a.id];this.has_changes=true},remove_all:function(){wf=this;$.each(this.nodes,function(b,a){a.destroy();wf.remove_node(a)})},rectify_workflow_outputs:function(){var b=false;var a=false;$.each(this.nodes,function(c,d){if(d.workflow_outputs&&d.workflow_outputs.length>0){b=true}$.each(d.post_job_actions,function(g,f){if(f.action_type==="HideDatasetAction"){a=true}})});if(b!==false||a!==false){$.each(this.nodes,function(c,g){if(g.type==="tool"){var f=false;if(g.post_job_actions==null){g.post_job_actions={};f=true}var d=[];$.each(g.post_job_actions,function(i,h){if(h.action_type=="HideDatasetAction"){d.push(i)}});if(d.length>0){$.each(d,function(h,j){f=true;delete g.post_job_actions[j]})}if(b){$.each(g.output_terminals,function(i,j){var h=true;$.each(g.workflow_outputs,function(l,m){if(j.name===m){h=false}});if(h===true){f=true;var k={action_type:"HideDatasetAction",output_name:j.name,action_arguments:{}};g.post_job_actions["HideDatasetAction"+j.name]=null;g.post_job_actions["HideDatasetAction"+j.name]=k}})}if(workflow.active_node==g&&f===true){workflow.reload_active_node()}}})}},to_simple:function(){var a={};$.each(this.nodes,function(c,f){var g={};$.each(f.input_terminals,function(i,j){g[j.name]=null;var h=[];$.each(j.connectors,function(k,l){h[k]={id:l.handle1.node.id,output_name:l.handle1.name};g[j.name]=h})});var b={};if(f.post_job_actions){$.each(f.post_job_actions,function(j,h){var k={action_type:h.action_type,output_name:h.output_name,action_arguments:h.action_arguments};b[h.action_type+h.output_name]=null;b[h.action_type+h.output_name]=k})}if(!f.workflow_outputs){f.workflow_outputs=[]}var d={id:f.id,type:f.type,tool_id:f.tool_id,tool_state:f.tool_state,tool_errors:f.tool_errors,input_connections:g,position:$(f.element).position(),annotation:f.annotation,post_job_actions:f.post_job_actions,workflow_outputs:f.workflow_outputs};a[f.id]=d});return{steps:a}},from_simple:function(b){wf=this;var c=0;wf.name=b.name;var a=false;$.each(b.steps,function(g,f){var d=prebuild_node(f.type,f.name,f.tool_id);d.init_field_data(f);if(f.position){d.element.css({top:f.position.top,left:f.position.left})}d.id=f.id;wf.nodes[d.id]=d;c=Math.max(c,parseInt(g));if(!a&&d.type==="tool"){if(d.workflow_outputs.length>0){a=true}else{$.each(d.post_job_actions,function(i,h){if(h.action_type==="HideDatasetAction"){a=true}})}}});wf.id_counter=c+1;$.each(b.steps,function(g,f){var d=wf.nodes[g];$.each(f.input_connections,function(i,h){if(h){if(!$.isArray(h)){h=[h]}$.each(h,function(k,j){var m=wf.nodes[j.id];var n=new Connector();n.connect(m.output_terminals[j.output_name],d.input_terminals[i]);n.redraw()})}});if(a&&d.type==="tool"){$.each(d.output_terminals,function(h,i){if(d.post_job_actions["HideDatasetAction"+i.name]===undefined){d.workflow_outputs.push(i.name);callout=$(d.element).find(".callout."+i.name);callout.find("img").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small.png");workflow.has_changes=true}})}})},check_changes_in_active_form:function(){if(this.active_form_has_changes){this.has_changes=true;$("#right-content").find("form").submit();this.active_form_has_changes=false}},reload_active_node:function(){if(this.active_node){var a=this.active_node;this.clear_active_node();this.activate_node(a)}},clear_active_node:function(){if(this.active_node){this.active_node.make_inactive();this.active_node=null}parent.show_form_for_tool("<div>No node selected</div>")},activate_node:function(a){if(this.active_node!=a){this.check_changes_in_active_form();this.clear_active_node();parent.show_form_for_tool(a.form_html+a.tooltip,a);a.make_active();this.active_node=a}},node_changed:function(a){this.has_changes=true;if(this.active_node==a){this.check_changes_in_active_form();parent.show_form_for_tool(a.form_html+a.tooltip,a)}},layout:function(){this.check_changes_in_active_form();this.has_changes=true;var i={};var b={};$.each(this.nodes,function(l,k){if(i[l]===undefined){i[l]=0}if(b[l]===undefined){b[l]=[]}});$.each(this.nodes,function(l,k){$.each(k.input_terminals,function(m,n){$.each(n.connectors,function(p,q){var o=q.handle1.node;i[k.id]+=1;b[o.id].push(k.id)})})});node_ids_by_level=[];while(true){level_parents=[];for(var a in i){if(i[a]==0){level_parents.push(a)}}if(level_parents.length==0){break}node_ids_by_level.push(level_parents);for(var f in level_parents){var j=level_parents[f];delete i[j];for(var g in b[j]){i[b[j][g]]-=1}}}if(i.length){return}var d=this.nodes;var h=80;v_pad=30;var c=h;$.each(node_ids_by_level,function(k,l){l.sort(function(p,o){return $(d[p].element).position().top-$(d[o].element).position().top});var m=0;var n=v_pad;$.each(l,function(o,r){var q=d[r];var p=$(q.element);$(p).css({top:n,left:c});m=Math.max(m,$(p).width());n+=$(p).height()+v_pad});c+=m+h});$.each(d,function(k,l){l.redraw()})},bounds_for_all_nodes:function(){var d=Infinity,b=-Infinity,c=Infinity,a=-Infinity,f;$.each(this.nodes,function(h,g){e=$(g.element);f=e.position();d=Math.min(d,f.left);b=Math.max(b,f.left+e.width());c=Math.min(c,f.top);a=Math.max(a,f.top+e.width())});return{xmin:d,xmax:b,ymin:c,ymax:a}},fit_canvas_to_nodes:function(){var a=this.bounds_for_all_nodes();var f=this.canvas_container.position();var i=this.canvas_container.parent();var d=fix_delta(a.xmin,100);var h=fix_delta(a.ymin,100);d=Math.max(d,f.left);h=Math.max(h,f.top);var c=f.left-d;var g=f.top-h;var b=round_up(a.xmax+100,100)+d;var j=round_up(a.ymax+100,100)+h;b=Math.max(b,-c+i.width());j=Math.max(j,-g+i.height());this.canvas_container.css({left:c,top:g,width:b,height:j});this.canvas_container.children().each(function(){var k=$(this).position();$(this).css("left",k.left+d);$(this).css("top",k.top+h)})}});function fix_delta(a,b){if(a<b||a>3*b){new_pos=(Math.ceil(((a%b))/b)+1)*b;return(-(a-new_pos))}return 0}function round_up(a,b){return Math.ceil(a/b)*b}function prebuild_node(l,j,r){var i=$("<div class='toolForm toolFormInCanvas'></div>");var g=new Node({element:i});g.type=l;if(l=="tool"){g.tool_id=r}var n=$("<div class='toolFormTitle unselectable'>"+j+"</div>");i.append(n);i.css("left",$(window).scrollLeft()+20);i.css("top",$(window).scrollTop()+20);var m=$("<div class='toolFormBody'></div>");var h="<div><img height='16' align='middle' src='"+galaxy_config.root+"static/images/loading_small_white_bg.gif'/> loading tool info...</div>";m.append(h);g.form_html=h;i.append(m);var k=$("<div class='buttons' style='float: right;'></div>");k.append($("<div>").addClass("fa-icon-button fa fa-times").click(function(b){g.destroy()}));i.appendTo("#canvas-container");var d=$("#canvas-container").position();var c=$("#canvas-container").parent();var a=i.width();var q=i.height();i.css({left:(-d.left)+(c.width()/2)-(a/2),top:(-d.top)+(c.height()/2)-(q/2)});k.prependTo(n);a+=(k.width()+10);i.css("width",a);$(i).bind("dragstart",function(){workflow.activate_node(g)}).bind("dragend",function(){workflow.node_changed(this);workflow.fit_canvas_to_nodes();canvas_manager.draw_overview()}).bind("dragclickonly",function(){workflow.activate_node(g)}).bind("drag",function(o,p){var f=$(this).offsetParent().offset(),b=p.offsetX-f.left,s=p.offsetY-f.top;$(this).css({left:b,top:s});$(this).find(".terminal").each(function(){this.terminal.redraw()})});return g}function add_node(b,d,a){var c=prebuild_node(b,d,a);workflow.add_node(c);workflow.fit_canvas_to_nodes();canvas_manager.draw_overview();workflow.activate_node(c);return c}var ext_to_type=null;var type_to_type=null;function issubtype(b,a){b=ext_to_type[b];a=ext_to_type[a];return(type_to_type[b])&&(a in type_to_type[b])}function populate_datatype_info(a){ext_to_type=a.ext_to_class_name;type_to_type=a.class_to_classes}var NodeView=Backbone.View.extend({initialize:function(a){this.node=a.node;this.output_width=Math.max(150,this.$el.width());this.tool_body=this.$el.find(".toolFormBody");this.tool_body.find("div").remove();this.newInputsDiv().appendTo(this.tool_body);this.terminalViews={};this.outputTerminlViews={}},render:function(){this.renderToolErrors();this.$el.css("width",Math.min(250,Math.max(this.$el.width(),this.output_width)))},renderToolErrors:function(){if(this.node.tool_errors){this.$el.addClass("tool-node-error")}else{this.$el.removeClass("tool-node-error")}},newInputsDiv:function(){return $("<div class='inputs'></div>")},updateMaxWidth:function(a){this.output_width=Math.max(this.output_width,a)},addRule:function(){this.tool_body.append($("<div class='rule'></div>"))},addDataInput:function(i,d){var j=true;if(!d){d=this.$(".inputs");j=false}var f=this.terminalViews[i.name];var h=(i.input_type=="dataset_collection")?InputCollectionTerminalView:InputTerminalView;if(f&&!(f instanceof h)){f.el.terminal.destroy();f=null}if(!f){f=new h({node:this.node,input:i})}else{var g=f.el.terminal;g.update(i);g.destroyInvalidConnections()}this.terminalViews[i.name]=f;var c=f.el;var b=new DataInputView({terminalElement:c,input:i,nodeView:this,skipResize:j});var a=b.$el;d.append(a.prepend(f.terminalElements()));return f},addDataOutput:function(a){var d=(a.collection_type)?OutputCollectionTerminalView:OutputTerminalView;var c=new d({node:this.node,output:a});var b=new DataOutputView({output:a,terminalElement:c.el,nodeView:this,});this.tool_body.append(b.$el.append(c.terminalElements()))},updateDataOutput:function(b){var a=this.node.output_terminals[b.name];a.update(b)}});var DataInputView=Backbone.View.extend({className:"form-row dataRow input-data-row",initialize:function(a){this.input=a.input;this.nodeView=a.nodeView;this.terminalElement=a.terminalElement;this.$el.attr("name",this.input.name).html(this.input.label);if(!a.skipResize){this.$el.css({position:"absolute",left:-1000,top:-1000,display:"none"});$("body").append(this.el);this.nodeView.updateMaxWidth(this.$el.outerWidth());this.$el.css({position:"",left:"",top:"",display:""});this.$el.remove()}},});var OutputCalloutView=Backbone.View.extend({tagName:"div",initialize:function(b){this.label=b.label;this.node=b.node;this.output=b.output;var a=this;this.$el.attr("class","callout "+this.label).css({display:"none"}).append($("<div class='buttons'></div>").append($("<img/>").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small-outline.png").click(function(){if($.inArray(a.output.name,a.node.workflow_outputs)!=-1){a.node.workflow_outputs.splice($.inArray(a.output.name,a.node.workflow_outputs),1);a.$("img").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small-outline.png")}else{a.node.workflow_outputs.push(a.output.name);a.$("img").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small.png")}workflow.has_changes=true;canvas_manager.draw_overview()}))).tooltip({delay:500,title:"Mark dataset as a workflow output. All unmarked datasets will be hidden."});this.$el.css({top:"50%",margin:"-8px 0px 0px 0px",right:8});this.$el.show();this.resetImage()},resetImage:function(){if($.inArray(this.output.name,this.node.workflow_outputs)===-1){this.$("img").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small-outline.png")}else{this.$("img").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small.png")}},hoverImage:function(){this.$("img").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small-yellow.png")}});var DataOutputView=Backbone.View.extend({className:"form-row dataRow",initialize:function(c){this.output=c.output;this.terminalElement=c.terminalElement;this.nodeView=c.nodeView;var a=this.output;var b=a.name;var f=this.nodeView.node;var d=a.extensions.indexOf("input")>=0||a.extensions.indexOf("input_collection")>=0;if(!d){b=b+" ("+a.extensions.join(", ")+")"}this.$el.html(b);if(f.type=="tool"){var g=new OutputCalloutView({label:b,output:a,node:f,});this.$el.append(g.el);this.$el.hover(function(){g.hoverImage()},function(){g.resetImage()})}this.$el.css({position:"absolute",left:-1000,top:-1000,display:"none"});$("body").append(this.el);this.nodeView.updateMaxWidth(this.$el.outerWidth()+17);this.$el.css({position:"",left:"",top:"",display:""}).detach()}});var TerminalView=Backbone.View.extend({setupMappingView:function(b){var c=new this.terminalMappingClass({terminal:b});var a=new this.terminalMappingViewClass({model:c});a.render();b.terminalMappingView=a;this.terminalMappingView=a},terminalElements:function(){if(this.terminalMappingView){return[this.terminalMappingView.el,this.el]}else{return[this.el]}}});var BaseInputTerminalView=TerminalView.extend({className:"terminal input-terminal",initialize:function(c){var f=c.node;var a=c.input;var b=a.name;var d=this.terminalForInput(a);if(!d.multiple){this.setupMappingView(d)}this.el.terminal=d;d.node=f;d.name=b;f.input_terminals[b]=d},events:{dropinit:"onDropInit",dropstart:"onDropStart",dropend:"onDropEnd",drop:"onDrop",hover:"onHover",},onDropInit:function(b,c){var a=this.el.terminal;return $(c.drag).hasClass("output-terminal")&&a.canAccept(c.drag.terminal)},onDropStart:function(a,b){if(b.proxy.terminal){b.proxy.terminal.connectors[0].inner_color="#BBFFBB"}},onDropEnd:function(a,b){if(b.proxy.terminal){b.proxy.terminal.connectors[0].inner_color="#FFFFFF"}},onDrop:function(b,c){var a=this.el.terminal;new Connector(c.drag.terminal,a).redraw()},onHover:function(){var c=this.el;var b=c.terminal;if(b.connectors.length>0){var a=$("<div class='callout'></div>").css({display:"none"}).appendTo("body").append($("<div class='button'></div>").append($("<div/>").addClass("fa-icon-button fa fa-times").click(function(){$.each(b.connectors,function(f,d){if(d){d.destroy()}});a.remove()}))).bind("mouseleave",function(){$(this).remove()});a.css({top:$(c).offset().top-2,left:$(c).offset().left-a.width(),"padding-right":$(c).width()}).show()}},});var InputTerminalView=BaseInputTerminalView.extend({terminalMappingClass:InputTerminalMapping,terminalMappingViewClass:InputTerminalMappingView,terminalForInput:function(a){return new InputTerminal({element:this.el,input:a})},});var InputCollectionTerminalView=BaseInputTerminalView.extend({terminalMappingClass:InputCollectionTerminalMapping,terminalMappingViewClass:InputCollectionTerminalMappingView,terminalForInput:function(a){return new InputCollectionTerminal({element:this.el,input:a})},});var BaseOutputTerminalView=TerminalView.extend({className:"terminal output-terminal",initialize:function(c){var f=c.node;var a=c.output;var b=a.name;var d=this.terminalForOutput(a);this.setupMappingView(d);this.el.terminal=d;d.node=f;d.name=b;f.output_terminals[b]=d},events:{drag:"onDrag",dragstart:"onDragStart",dragend:"onDragEnd",},onDrag:function(b,c){var a=function(){var f=$(c.proxy).offsetParent().offset(),d=c.offsetX-f.left,g=c.offsetY-f.top;$(c.proxy).css({left:d,top:g});c.proxy.terminal.redraw();canvas_manager.update_viewport_overlay()};a();$("#canvas-container").get(0).scroll_panel.test(b,a)},onDragStart:function(b,f){$(f.available).addClass("input-terminal-active");workflow.check_changes_in_active_form();var a=$('<div class="drag-terminal" style="position: absolute;"></div>').appendTo("#canvas-container").get(0);a.terminal=new OutputTerminal({element:a});var g=new Connector();g.dragging=true;g.connect(this.el.terminal,a.terminal);return a},onDragEnd:function(a,b){b.proxy.terminal.connectors[0].destroy();$(b.proxy).remove();$(b.available).removeClass("input-terminal-active");$("#canvas-container").get(0).scroll_panel.stop()}});var OutputTerminalView=BaseOutputTerminalView.extend({terminalMappingClass:OutputTerminalMapping,terminalMappingViewClass:OutputTerminalMappingView,terminalForOutput:function(a){var c=a.extensions;var b=new OutputTerminal({element:this.el,datatypes:c});return b},});var OutputCollectionTerminalView=BaseOutputTerminalView.extend({terminalMappingClass:OutputCollectionTerminalMapping,terminalMappingViewClass:OutputCollectionTerminalMappingView,terminalForOutput:function(a){var c=a.collection_type;var b=new OutputCollectionTerminal({element:this.el,collection_type:c,datatypes:a.extensions});return b},});function ScrollPanel(a){this.panel=a}$.extend(ScrollPanel.prototype,{test:function(v,d){clearTimeout(this.timeout);var k=v.pageX,j=v.pageY,l=$(this.panel),c=l.position(),b=l.width(),i=l.height(),w=l.parent(),s=w.width(),a=w.height(),r=w.offset(),p=r.left,m=r.top,A=p+w.width(),u=m+w.height(),B=-(b-(s/2)),z=-(i-(a/2)),g=(s/2),f=(a/2),h=false,q=5,o=23;if(k-q<p){if(c.left<g){var n=Math.min(o,g-c.left);l.css("left",c.left+n);h=true}}else{if(k+q>A){if(c.left>B){var n=Math.min(o,c.left-B);l.css("left",c.left-n);h=true}}else{if(j-q<m){if(c.top<f){var n=Math.min(o,f-c.top);l.css("top",c.top+n);h=true}}else{if(j+q>u){if(c.top>z){var n=Math.min(o,c.top-B);l.css("top",(c.top-n)+"px");h=true}}}}}if(h){d();var l=this;this.timeout=setTimeout(function(){l.test(v,d)},50)}},stop:function(b,a){clearTimeout(this.timeout)}});function CanvasManager(b,a){this.cv=b;this.cc=this.cv.find("#canvas-container");this.oc=a.find("#overview-canvas");this.ov=a.find("#overview-viewport");this.init_drag()}$.extend(CanvasManager.prototype,{init_drag:function(){var b=this;var a=function(f,g){f=Math.min(f,b.cv.width()/2);f=Math.max(f,-b.cc.width()+b.cv.width()/2);g=Math.min(g,b.cv.height()/2);g=Math.max(g,-b.cc.height()+b.cv.height()/2);b.cc.css({left:f,top:g});b.update_viewport_overlay()};this.cc.each(function(){this.scroll_panel=new ScrollPanel(this)});var d,c;this.cv.bind("dragstart",function(){var g=$(this).offset();var f=b.cc.position();c=f.top-g.top;d=f.left-g.left}).bind("drag",function(f,g){a(g.offsetX+d,g.offsetY+c)}).bind("dragend",function(){workflow.fit_canvas_to_nodes();b.draw_overview()});this.ov.bind("drag",function(k,l){var h=b.cc.width(),n=b.cc.height(),m=b.oc.width(),j=b.oc.height(),f=$(this).offsetParent().offset(),i=l.offsetX-f.left,g=l.offsetY-f.top;a(-(i/m*h),-(g/j*n))}).bind("dragend",function(){workflow.fit_canvas_to_nodes();b.draw_overview()});$("#overview-border").bind("drag",function(g,i){var j=$(this).offsetParent();var h=j.offset();var f=Math.max(j.width()-(i.offsetX-h.left),j.height()-(i.offsetY-h.top));$(this).css({width:f,height:f});b.draw_overview()});$("#overview-border div").bind("drag",function(){})},update_viewport_overlay:function(){var b=this.cc,f=this.cv,a=this.oc,c=this.ov,d=b.width(),j=b.height(),i=a.width(),g=a.height(),h=b.position();c.css({left:-(h.left/d*i),top:-(h.top/j*g),width:(f.width()/d*i)-2,height:(f.height()/j*g)-2})},draw_overview:function(){var j=$("#overview-canvas"),m=j.parent().parent().width(),i=j.get(0).getContext("2d"),d=$("#canvas-container").width(),l=$("#canvas-container").height();var g,a,k,f;var h=this.cv.width();var b=this.cv.height();if(d<h&&l<b){k=d/h*m;f=(m-k)/2;g=l/b*m;a=(m-g)/2}else{if(d<l){a=0;g=m;k=Math.ceil(g*d/l);f=(m-k)/2}else{k=m;f=0;g=Math.ceil(k*l/d);a=(m-g)/2}}j.parent().css({left:f,top:a,width:k,height:g});j.attr("width",k);j.attr("height",g);$.each(workflow.nodes,function(t,q){i.fillStyle="#D2C099";i.strokeStyle="#D8B365";i.lineWidth=1;var s=$(q.element),n=s.position(),c=n.left/d*k,r=n.top/l*g,o=s.width()/d*k,p=s.height()/l*g;if(q.tool_errors){i.fillStyle="#FFCCCC";i.strokeStyle="#AA6666"}else{if(q.workflow_outputs!=undefined&&q.workflow_outputs.length>0){i.fillStyle="#E8A92D";i.strokeStyle="#E8A92D"}}i.fillRect(c,r,o,p);i.strokeRect(c,r,o,p)});this.update_viewport_overlay()}}); \ No newline at end of file +function CollectionTypeDescription(a){this.collectionType=a;this.isCollection=true;this.rank=a.split(":").length}$.extend(CollectionTypeDescription.prototype,{append:function(a){if(a===NULL_COLLECTION_TYPE_DESCRIPTION){return this}if(a===ANY_COLLECTION_TYPE_DESCRIPTION){return otherCollectionType}return new CollectionTypeDescription(this.collectionType+":"+a.collectionType)},canMatch:function(a){if(a===NULL_COLLECTION_TYPE_DESCRIPTION){return false}if(a===ANY_COLLECTION_TYPE_DESCRIPTION){return true}return a.collectionType==this.collectionType},canMapOver:function(b){if(b===NULL_COLLECTION_TYPE_DESCRIPTION){return false}if(b===ANY_COLLECTION_TYPE_DESCRIPTION){return false}if(this.rank<=b.rank){return false}var a=b.collectionType;return this._endsWith(this.collectionType,a)},effectiveMapOver:function(a){var c=a.collectionType;var b=this.collectionType.substring(0,this.collectionType.length-c.length-1);return new CollectionTypeDescription(b)},equal:function(a){return a.collectionType==this.collectionType},toString:function(){return"CollectionType["+this.collectionType+"]"},_endsWith:function(b,a){return b.indexOf(a,b.length-a.length)!==-1}});NULL_COLLECTION_TYPE_DESCRIPTION={isCollection:false,canMatch:function(a){return false},canMapOver:function(a){return false},toString:function(){return"NullCollectionType[]"},append:function(a){return a},equal:function(a){return a===this}};ANY_COLLECTION_TYPE_DESCRIPTION={isCollection:true,canMatch:function(a){return NULL_COLLECTION_TYPE_DESCRIPTION!==a},canMapOver:function(a){return false},toString:function(){return"AnyCollectionType[]"},append:function(a){throw"Cannot append to ANY_COLLECTION_TYPE_DESCRIPTION"},equal:function(a){return a===this}};var TerminalMapping=Backbone.Model.extend({initialize:function(a){this.mapOver=a.mapOver||NULL_COLLECTION_TYPE_DESCRIPTION;this.terminal=a.terminal;this.terminal.terminalMapping=this},disableMapOver:function(){this.setMapOver(NULL_COLLECTION_TYPE_DESCRIPTION)},setMapOver:function(a){this.mapOver=a;this.trigger("change")}});var TerminalMappingView=Backbone.View.extend({tagName:"div",className:"fa-icon-button fa fa-folder-o",initialize:function(b){var a="Run tool in parallel over collection";this.$el.tooltip({delay:500,title:a});this.model.bind("change",_.bind(this.render,this))},render:function(){if(this.model.mapOver.isCollection){this.$el.show()}else{this.$el.hide()}},});var InputTerminalMappingView=TerminalMappingView.extend({events:{click:"onClick",mouseenter:"onMouseEnter",mouseleave:"onMouseLeave",},onMouseEnter:function(b){var a=this.model;if(!a.terminal.connected()&&a.mapOver.isCollection){this.$el.css("color","red")}},onMouseLeave:function(a){this.$el.css("color","black")},onClick:function(b){var a=this.model;if(!a.terminal.connected()&&a.mapOver.isCollection){a.terminal.resetMapping()}},});var InputTerminalMapping=TerminalMapping;var InputCollectionTerminalMapping=TerminalMapping;var OutputTerminalMapping=TerminalMapping;var OutputTerminalMappingView=TerminalMappingView;var InputCollectionTerminalMappingView=InputTerminalMappingView;var OutputCollectionTerminalMapping=TerminalMapping;var OutputCollectionTerminalMappingView=TerminalMappingView;var Terminal=Backbone.Model.extend({initialize:function(a){this.element=a.element;this.connectors=[]},connect:function(a){this.connectors.push(a);if(this.node){this.node.markChanged()}},disconnect:function(a){this.connectors.splice($.inArray(a,this.connectors),1);if(this.node){this.node.markChanged();this.resetMappingIfNeeded()}},redraw:function(){$.each(this.connectors,function(a,b){b.redraw()})},destroy:function(){$.each(this.connectors.slice(),function(a,b){b.destroy()})},destroyInvalidConnections:function(){_.each(this.connectors,function(a){a.destroyIfInvalid()})},setMapOver:function(a){if(this.multiple){return}if(!this.mapOver().equal(a)){this.terminalMapping.setMapOver(a);_.each(this.node.output_terminals,function(b){b.setMapOver(a)})}},mapOver:function(){if(!this.terminalMapping){return NULL_COLLECTION_TYPE_DESCRIPTION}else{return this.terminalMapping.mapOver}},isMappedOver:function(){return this.terminalMapping&&this.terminalMapping.mapOver.isCollection},resetMapping:function(){this.terminalMapping.disableMapOver()},resetMappingIfNeeded:function(){},});var OutputTerminal=Terminal.extend({initialize:function(a){Terminal.prototype.initialize.call(this,a);this.datatypes=a.datatypes},resetMappingIfNeeded:function(){if(!this.node.hasConnectedOutputTerminals()&&!this.node.hasConnectedMappedInputTerminals()){_.each(this.node.mappedInputTerminals(),function(b){b.resetMappingIfNeeded()})}var a=!this.node.hasMappedOverInputTerminals();if(a){this.resetMapping()}},resetMapping:function(){this.terminalMapping.disableMapOver();_.each(this.connectors,function(a){var b=a.handle2;if(b){b.resetMappingIfNeeded();a.destroyIfInvalid()}})}});var BaseInputTerminal=Terminal.extend({initialize:function(a){Terminal.prototype.initialize.call(this,a);this.update(a.input)},canAccept:function(a){if(this._inputFilled()){return false}else{return this.attachable(a)}},resetMappingIfNeeded:function(){var b=this.mapOver();if(!b.isCollection){return}var a=this.node.hasConnectedMappedInputTerminals()||(!this.node.hasConnectedOutputTerminals());if(a){this.resetMapping()}},resetMapping:function(){this.terminalMapping.disableMapOver();if(!this.node.hasMappedOverInputTerminals()){_.each(this.node.output_terminals,function(a){a.resetMapping()})}},connected:function(){return this.connectors.length!==0},_inputFilled:function(){var a;if(!this.connected()){a=false}else{if(this.multiple){if(!this.connected()){a=false}else{var b=this.connectors[0].handle1;if(!b){a=false}else{if(b.isDataCollectionInput||b.isMappedOver()||b.datatypes.indexOf("input_collection")>0){a=true}else{a=false}}}}else{a=true}}return a},_mappingConstraints:function(){if(!this.node){return[]}var b=this.mapOver();if(b.isCollection){return[b]}var a=[];if(!this.node.hasConnectedOutputTerminals()){_.each(this.node.connectedMappedInputTerminals(),function(c){a.push(c.mapOver())})}else{a.push(_.first(_.values(this.node.output_terminals)).mapOver())}return a},_producesAcceptableDatatype:function(a){for(var c in this.datatypes){var f=new Array();f=f.concat(a.datatypes);if(a.node.post_job_actions){for(var d in a.node.post_job_actions){var g=a.node.post_job_actions[d];if(g.action_type=="ChangeDatatypeAction"&&(g.output_name==""||g.output_name==a.name)&&g.action_arguments){f.push(g.action_arguments.newtype)}}}for(var b in f){var h=f[b];if(h=="input"||h=="input_collection"||issubtype(f[b],this.datatypes[c])){return true}}}return false},_otherCollectionType:function(a){var c=NULL_COLLECTION_TYPE_DESCRIPTION;if(a.isDataCollectionInput){c=a.collectionType}else{var b=a.mapOver();if(b.isCollection){c=b}}return c},});var InputTerminal=BaseInputTerminal.extend({update:function(a){this.datatypes=a.extensions;this.multiple=a.multiple;this.collection=false},connect:function(a){BaseInputTerminal.prototype.connect.call(this,a);var b=a.handle1;if(!b){return}var c=this._otherCollectionType(b);if(c.isCollection){this.setMapOver(c)}},attachable:function(b){var d=this._otherCollectionType(b);var a=this.mapOver();if(d.isCollection){if(this.multiple){if(this.connected()){return false}if(d.rank==1){return this._producesAcceptableDatatype(b)}else{return false}}if(a.isCollection&&a.canMatch(d)){return this._producesAcceptableDatatype(b)}else{var c=this._mappingConstraints();if(c.every(_.bind(d.canMatch,d))){return this._producesAcceptableDatatype(b)}else{return false}}}else{if(a.isCollection){return false}}return this._producesAcceptableDatatype(b)}});var InputCollectionTerminal=BaseInputTerminal.extend({update:function(a){this.multiple=false;this.collection=true;this.datatypes=a.extensions;if(a.collection_type){this.collectionType=new CollectionTypeDescription(a.collection_type)}else{this.collectionType=ANY_COLLECTION_TYPE_DESCRIPTION}},connect:function(b){BaseInputTerminal.prototype.connect.call(this,b);var a=b.handle1;if(!a){return}var c=this._effectiveMapOver(a);this.setMapOver(c)},_effectiveMapOver:function(a){var b=this.collectionType;var c=this._otherCollectionType(a);if(!b.canMatch(c)){return c.effectiveMapOver(b)}else{return NULL_COLLECTION_TYPE_DESCRIPTION}},_effectiveCollectionType:function(){var b=this.collectionType;var a=this.mapOver();return a.append(b)},attachable:function(b){var g=this._otherCollectionType(b);if(g.isCollection){var f=this._effectiveCollectionType();var a=this.mapOver();if(f.canMatch(g)){return this._producesAcceptableDatatype(b)}else{if(a.isCollection){return false}else{if(g.canMapOver(this.collectionType)){var d=this._effectiveMapOver(b);if(!d.isCollection){return false}var c=this._mappingConstraints();if(c.every(d.canMatch)){return this._producesAcceptableDatatype(b)}}}}}return false}});var OutputCollectionTerminal=Terminal.extend({initialize:function(a){Terminal.prototype.initialize.call(this,a);this.datatypes=a.datatypes;this.collectionType=new CollectionTypeDescription(a.collection_type);this.isDataCollectionInput=true},update:function(a){var b=new CollectionTypeDescription(a.collection_type);if(b.collectionType!=this.collectionType.collectionType){_.each(this.connectors,function(c){c.destroy()})}this.collectionType=b}});function Connector(b,a){this.canvas=null;this.dragging=false;this.inner_color="#FFFFFF";this.outer_color="#D8B365";if(b&&a){this.connect(b,a)}}$.extend(Connector.prototype,{connect:function(b,a){this.handle1=b;if(this.handle1){this.handle1.connect(this)}this.handle2=a;if(this.handle2){this.handle2.connect(this)}},destroy:function(){if(this.handle1){this.handle1.disconnect(this)}if(this.handle2){this.handle2.disconnect(this)}$(this.canvas).remove()},destroyIfInvalid:function(){if(this.handle1&&this.handle2&&!this.handle2.attachable(this.handle1)){this.destroy()}},redraw:function(){var f=$("#canvas-container");if(!this.canvas){this.canvas=document.createElement("canvas");if(window.G_vmlCanvasManager){G_vmlCanvasManager.initElement(this.canvas)}f.append($(this.canvas));if(this.dragging){this.canvas.style.zIndex="300"}}var v=function(c){return $(c).offset().left-f.offset().left};var p=function(c){return $(c).offset().top-f.offset().top};if(!this.handle1||!this.handle2){return}var o=v(this.handle1.element)+5;var n=p(this.handle1.element)+5;var x=v(this.handle2.element)+5;var u=p(this.handle2.element)+5;var k=100;var r=Math.min(o,x);var a=Math.max(o,x);var q=Math.min(n,u);var B=Math.max(n,u);var d=Math.min(Math.max(Math.abs(B-q)/2,100),300);var w=r-k;var A=q-k;var y=a-r+2*k;var s=B-q+2*k;this.canvas.style.left=w+"px";this.canvas.style.top=A+"px";this.canvas.setAttribute("width",y);this.canvas.setAttribute("height",s);o-=w;n-=A;x-=w;u-=A;var z=this.canvas.getContext("2d"),h=null,l=null;var g=1;if(this.handle1&&this.handle1.isMappedOver()){var h=[-6,-3,0,3,6];g=5}else{var h=[0]}if(this.handle2&&this.handle2.isMappedOver()){var l=[-6,-3,0,3,6];g=5}else{var l=[0]}var b=this;for(var t=0;t<g;t++){var m=5,j=7;if(h.length>1||l.length>1){m=1;j=3}b.draw_outlined_curve(o,n,x,u,d,m,j,h[t%h.length],l[t%l.length])}},draw_outlined_curve:function(j,i,l,k,a,b,f,g,d){var g=g||0;var d=d||0;var h=this.canvas.getContext("2d");h.lineCap="round";h.strokeStyle=this.outer_color;h.lineWidth=f;h.beginPath();h.moveTo(j,i+g);h.bezierCurveTo(j+a,i+g,l-a,k+d,l,k+d);h.stroke();h.strokeStyle=this.inner_color;h.lineWidth=b;h.beginPath();h.moveTo(j,i+g);h.bezierCurveTo(j+a,i+g,l-a,k+d,l,k+d);h.stroke()}});var Node=Backbone.Model.extend({initialize:function(a){this.element=a.element;this.input_terminals={};this.output_terminals={};this.tool_errors={}},connectedOutputTerminals:function(){return this._connectedTerminals(this.output_terminals)},_connectedTerminals:function(b){var a=[];$.each(b,function(c,d){if(d.connectors.length>0){a.push(d)}});return a},hasConnectedOutputTerminals:function(){var a=this.output_terminals;for(var b in a){if(a[b].connectors.length>0){return true}}return false},connectedMappedInputTerminals:function(){return this._connectedMappedTerminals(this.input_terminals)},hasConnectedMappedInputTerminals:function(){var c=this.input_terminals;for(var b in c){var a=c[b];if(a.connectors.length>0&&a.isMappedOver()){return true}}return false},_connectedMappedTerminals:function(b){var a=[];$.each(b,function(c,d){var f=d.mapOver();if(f.isCollection){if(d.connectors.length>0){a.push(d)}}});return a},mappedInputTerminals:function(){return this._mappedTerminals(this.input_terminals)},_mappedTerminals:function(b){var a=[];$.each(b,function(c,d){var f=d.mapOver();if(f.isCollection){a.push(d)}});return a},hasMappedOverInputTerminals:function(){var a=false;_.each(this.input_terminals,function(b){var c=b.mapOver();if(c.isCollection){a=true}});return a},redraw:function(){$.each(this.input_terminals,function(a,b){b.redraw()});$.each(this.output_terminals,function(a,b){b.redraw()})},destroy:function(){$.each(this.input_terminals,function(a,b){b.destroy()});$.each(this.output_terminals,function(a,b){b.destroy()});workflow.remove_node(this);$(this.element).remove()},make_active:function(){$(this.element).addClass("toolForm-active")},make_inactive:function(){var a=this.element.get(0);(function(b){b.removeChild(a);b.appendChild(a)})(a.parentNode);$(a).removeClass("toolForm-active")},init_field_data:function(b){if(b.type){this.type=b.type}this.name=b.name;this.form_html=b.form_html;this.tool_state=b.tool_state;this.tool_errors=b.tool_errors;this.tooltip=b.tooltip?b.tooltip:"";this.annotation=b.annotation;this.post_job_actions=b.post_job_actions?b.post_job_actions:{};this.workflow_outputs=b.workflow_outputs?b.workflow_outputs:[];var a=this;var c=new NodeView({el:this.element[0],node:a,});a.nodeView=c;$.each(b.data_inputs,function(f,d){c.addDataInput(d)});if((b.data_inputs.length>0)&&(b.data_outputs.length>0)){c.addRule()}$.each(b.data_outputs,function(f,d){c.addDataOutput(d)});c.render();workflow.node_changed(this)},update_field_data:function(d){var c=this;nodeView=c.nodeView;this.tool_state=d.tool_state;this.form_html=d.form_html;this.tool_errors=d.tool_errors;this.annotation=d.annotation;if("post_job_actions" in d){var f=$.parseJSON(d.post_job_actions);this.post_job_actions=f?f:{}}c.nodeView.renderToolErrors();var g=nodeView.$("div.inputs");var a=nodeView.newInputsDiv();var b={};_.each(d.data_inputs,function(h){var i=c.nodeView.addDataInput(h,a);b[h.name]=i});_.each(_.difference(_.values(nodeView.terminalViews),_.values(b)),function(h){h.el.terminal.destroy()});nodeView.terminalViews=b;if(d.data_outputs.length==1&&"collection_type" in d.data_outputs[0]){nodeView.updateDataOutput(d.data_outputs[0])}g.replaceWith(a);this.markChanged();this.redraw()},error:function(d){var a=$(this.element).find(".toolFormBody");a.find("div").remove();var c="<div style='color: red; text-style: italic;'>"+d+"</div>";this.form_html=c;a.html(c);workflow.node_changed(this)},markChanged:function(){workflow.node_changed(this)}});function Workflow(a){this.canvas_container=a;this.id_counter=0;this.nodes={};this.name=null;this.has_changes=false;this.active_form_has_changes=false}$.extend(Workflow.prototype,{add_node:function(a){a.id=this.id_counter;a.element.attr("id","wf-node-step-"+a.id);this.id_counter++;this.nodes[a.id]=a;this.has_changes=true;a.workflow=this},remove_node:function(a){if(this.active_node==a){this.clear_active_node()}delete this.nodes[a.id];this.has_changes=true},remove_all:function(){wf=this;$.each(this.nodes,function(b,a){a.destroy();wf.remove_node(a)})},rectify_workflow_outputs:function(){var b=false;var a=false;$.each(this.nodes,function(c,d){if(d.workflow_outputs&&d.workflow_outputs.length>0){b=true}$.each(d.post_job_actions,function(g,f){if(f.action_type==="HideDatasetAction"){a=true}})});if(b!==false||a!==false){$.each(this.nodes,function(c,g){if(g.type==="tool"){var f=false;if(g.post_job_actions==null){g.post_job_actions={};f=true}var d=[];$.each(g.post_job_actions,function(i,h){if(h.action_type=="HideDatasetAction"){d.push(i)}});if(d.length>0){$.each(d,function(h,j){f=true;delete g.post_job_actions[j]})}if(b){$.each(g.output_terminals,function(i,j){var h=true;$.each(g.workflow_outputs,function(l,m){if(j.name===m){h=false}});if(h===true){f=true;var k={action_type:"HideDatasetAction",output_name:j.name,action_arguments:{}};g.post_job_actions["HideDatasetAction"+j.name]=null;g.post_job_actions["HideDatasetAction"+j.name]=k}})}if(workflow.active_node==g&&f===true){workflow.reload_active_node()}}})}},to_simple:function(){var a={};$.each(this.nodes,function(c,f){var g={};$.each(f.input_terminals,function(i,j){g[j.name]=null;var h=[];$.each(j.connectors,function(k,l){h[k]={id:l.handle1.node.id,output_name:l.handle1.name};g[j.name]=h})});var b={};if(f.post_job_actions){$.each(f.post_job_actions,function(j,h){var k={action_type:h.action_type,output_name:h.output_name,action_arguments:h.action_arguments};b[h.action_type+h.output_name]=null;b[h.action_type+h.output_name]=k})}if(!f.workflow_outputs){f.workflow_outputs=[]}var d={id:f.id,type:f.type,tool_id:f.tool_id,tool_state:f.tool_state,tool_errors:f.tool_errors,input_connections:g,position:$(f.element).position(),annotation:f.annotation,post_job_actions:f.post_job_actions,workflow_outputs:f.workflow_outputs};a[f.id]=d});return{steps:a}},from_simple:function(b){wf=this;var c=0;wf.name=b.name;var a=false;$.each(b.steps,function(g,f){var d=prebuild_node(f.type,f.name,f.tool_id);d.init_field_data(f);if(f.position){d.element.css({top:f.position.top,left:f.position.left})}d.id=f.id;wf.nodes[d.id]=d;c=Math.max(c,parseInt(g));if(!a&&d.type==="tool"){if(d.workflow_outputs.length>0){a=true}else{$.each(d.post_job_actions,function(i,h){if(h.action_type==="HideDatasetAction"){a=true}})}}});wf.id_counter=c+1;$.each(b.steps,function(g,f){var d=wf.nodes[g];$.each(f.input_connections,function(i,h){if(h){if(!$.isArray(h)){h=[h]}$.each(h,function(k,j){var m=wf.nodes[j.id];var n=new Connector();n.connect(m.output_terminals[j.output_name],d.input_terminals[i]);n.redraw()})}});if(a&&d.type==="tool"){$.each(d.output_terminals,function(h,i){if(d.post_job_actions["HideDatasetAction"+i.name]===undefined){d.workflow_outputs.push(i.name);callout=$(d.element).find(".callout."+i.name);callout.find("img").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small.png");workflow.has_changes=true}})}})},check_changes_in_active_form:function(){if(this.active_form_has_changes){this.has_changes=true;$("#right-content").find("form").submit();this.active_form_has_changes=false}},reload_active_node:function(){if(this.active_node){var a=this.active_node;this.clear_active_node();this.activate_node(a)}},clear_active_node:function(){if(this.active_node){this.active_node.make_inactive();this.active_node=null}parent.show_form_for_tool("<div>No node selected</div>")},activate_node:function(a){if(this.active_node!=a){this.check_changes_in_active_form();this.clear_active_node();parent.show_form_for_tool(a.form_html+a.tooltip,a);a.make_active();this.active_node=a}},node_changed:function(a){this.has_changes=true;if(this.active_node==a){this.check_changes_in_active_form();parent.show_form_for_tool(a.form_html+a.tooltip,a)}},layout:function(){this.check_changes_in_active_form();this.has_changes=true;var i={};var b={};$.each(this.nodes,function(l,k){if(i[l]===undefined){i[l]=0}if(b[l]===undefined){b[l]=[]}});$.each(this.nodes,function(l,k){$.each(k.input_terminals,function(m,n){$.each(n.connectors,function(p,q){var o=q.handle1.node;i[k.id]+=1;b[o.id].push(k.id)})})});node_ids_by_level=[];while(true){level_parents=[];for(var a in i){if(i[a]==0){level_parents.push(a)}}if(level_parents.length==0){break}node_ids_by_level.push(level_parents);for(var f in level_parents){var j=level_parents[f];delete i[j];for(var g in b[j]){i[b[j][g]]-=1}}}if(i.length){return}var d=this.nodes;var h=80;v_pad=30;var c=h;$.each(node_ids_by_level,function(k,l){l.sort(function(p,o){return $(d[p].element).position().top-$(d[o].element).position().top});var m=0;var n=v_pad;$.each(l,function(o,r){var q=d[r];var p=$(q.element);$(p).css({top:n,left:c});m=Math.max(m,$(p).width());n+=$(p).height()+v_pad});c+=m+h});$.each(d,function(k,l){l.redraw()})},bounds_for_all_nodes:function(){var d=Infinity,b=-Infinity,c=Infinity,a=-Infinity,f;$.each(this.nodes,function(h,g){e=$(g.element);f=e.position();d=Math.min(d,f.left);b=Math.max(b,f.left+e.width());c=Math.min(c,f.top);a=Math.max(a,f.top+e.width())});return{xmin:d,xmax:b,ymin:c,ymax:a}},fit_canvas_to_nodes:function(){var a=this.bounds_for_all_nodes();var f=this.canvas_container.position();var i=this.canvas_container.parent();var d=fix_delta(a.xmin,100);var h=fix_delta(a.ymin,100);d=Math.max(d,f.left);h=Math.max(h,f.top);var c=f.left-d;var g=f.top-h;var b=round_up(a.xmax+100,100)+d;var j=round_up(a.ymax+100,100)+h;b=Math.max(b,-c+i.width());j=Math.max(j,-g+i.height());this.canvas_container.css({left:c,top:g,width:b,height:j});this.canvas_container.children().each(function(){var k=$(this).position();$(this).css("left",k.left+d);$(this).css("top",k.top+h)})}});function fix_delta(a,b){if(a<b||a>3*b){new_pos=(Math.ceil(((a%b))/b)+1)*b;return(-(a-new_pos))}return 0}function round_up(a,b){return Math.ceil(a/b)*b}function prebuild_node(l,j,r){var i=$("<div class='toolForm toolFormInCanvas'></div>");var g=new Node({element:i});g.type=l;if(l=="tool"){g.tool_id=r}var n=$("<div class='toolFormTitle unselectable'>"+j+"</div>");i.append(n);i.css("left",$(window).scrollLeft()+20);i.css("top",$(window).scrollTop()+20);var m=$("<div class='toolFormBody'></div>");var h="<div><img height='16' align='middle' src='"+galaxy_config.root+"static/images/loading_small_white_bg.gif'/> loading tool info...</div>";m.append(h);g.form_html=h;i.append(m);var k=$("<div class='buttons' style='float: right;'></div>");k.append($("<div>").addClass("fa-icon-button fa fa-times").click(function(b){g.destroy()}));i.appendTo("#canvas-container");var d=$("#canvas-container").position();var c=$("#canvas-container").parent();var a=i.width();var q=i.height();i.css({left:(-d.left)+(c.width()/2)-(a/2),top:(-d.top)+(c.height()/2)-(q/2)});k.prependTo(n);a+=(k.width()+10);i.css("width",a);$(i).bind("dragstart",function(){workflow.activate_node(g)}).bind("dragend",function(){workflow.node_changed(this);workflow.fit_canvas_to_nodes();canvas_manager.draw_overview()}).bind("dragclickonly",function(){workflow.activate_node(g)}).bind("drag",function(o,p){var f=$(this).offsetParent().offset(),b=p.offsetX-f.left,s=p.offsetY-f.top;$(this).css({left:b,top:s});$(this).find(".terminal").each(function(){this.terminal.redraw()})});return g}function add_node(b,d,a){var c=prebuild_node(b,d,a);workflow.add_node(c);workflow.fit_canvas_to_nodes();canvas_manager.draw_overview();workflow.activate_node(c);return c}var ext_to_type=null;var type_to_type=null;function issubtype(b,a){b=ext_to_type[b];a=ext_to_type[a];return(type_to_type[b])&&(a in type_to_type[b])}function populate_datatype_info(a){ext_to_type=a.ext_to_class_name;type_to_type=a.class_to_classes}var NodeView=Backbone.View.extend({initialize:function(a){this.node=a.node;this.output_width=Math.max(150,this.$el.width());this.tool_body=this.$el.find(".toolFormBody");this.tool_body.find("div").remove();this.newInputsDiv().appendTo(this.tool_body);this.terminalViews={};this.outputTerminlViews={}},render:function(){this.renderToolErrors();this.$el.css("width",Math.min(250,Math.max(this.$el.width(),this.output_width)))},renderToolErrors:function(){if(this.node.tool_errors){this.$el.addClass("tool-node-error")}else{this.$el.removeClass("tool-node-error")}},newInputsDiv:function(){return $("<div class='inputs'></div>")},updateMaxWidth:function(a){this.output_width=Math.max(this.output_width,a)},addRule:function(){this.tool_body.append($("<div class='rule'></div>"))},addDataInput:function(i,d){var j=true;if(!d){d=this.$(".inputs");j=false}var f=this.terminalViews[i.name];var h=(i.input_type=="dataset_collection")?InputCollectionTerminalView:InputTerminalView;if(f&&!(f instanceof h)){f.el.terminal.destroy();f=null}if(!f){f=new h({node:this.node,input:i})}else{var g=f.el.terminal;g.update(i);g.destroyInvalidConnections()}this.terminalViews[i.name]=f;var c=f.el;var b=new DataInputView({terminalElement:c,input:i,nodeView:this,skipResize:j});var a=b.$el;d.append(a.prepend(f.terminalElements()));return f},addDataOutput:function(a){var d=(a.collection_type)?OutputCollectionTerminalView:OutputTerminalView;var c=new d({node:this.node,output:a});var b=new DataOutputView({output:a,terminalElement:c.el,nodeView:this,});this.tool_body.append(b.$el.append(c.terminalElements()))},updateDataOutput:function(b){var a=this.node.output_terminals[b.name];a.update(b)}});var DataInputView=Backbone.View.extend({className:"form-row dataRow input-data-row",initialize:function(a){this.input=a.input;this.nodeView=a.nodeView;this.terminalElement=a.terminalElement;this.$el.attr("name",this.input.name).html(this.input.label);if(!a.skipResize){this.$el.css({position:"absolute",left:-1000,top:-1000,display:"none"});$("body").append(this.el);this.nodeView.updateMaxWidth(this.$el.outerWidth());this.$el.css({position:"",left:"",top:"",display:""});this.$el.remove()}},});var OutputCalloutView=Backbone.View.extend({tagName:"div",initialize:function(b){this.label=b.label;this.node=b.node;this.output=b.output;var a=this;this.$el.attr("class","callout "+this.label).css({display:"none"}).append($("<div class='buttons'></div>").append($("<img/>").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small-outline.png").click(function(){if($.inArray(a.output.name,a.node.workflow_outputs)!=-1){a.node.workflow_outputs.splice($.inArray(a.output.name,a.node.workflow_outputs),1);a.$("img").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small-outline.png")}else{a.node.workflow_outputs.push(a.output.name);a.$("img").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small.png")}workflow.has_changes=true;canvas_manager.draw_overview()}))).tooltip({delay:500,title:"Mark dataset as a workflow output. All unmarked datasets will be hidden."});this.$el.css({top:"50%",margin:"-8px 0px 0px 0px",right:8});this.$el.show();this.resetImage()},resetImage:function(){if($.inArray(this.output.name,this.node.workflow_outputs)===-1){this.$("img").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small-outline.png")}else{this.$("img").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small.png")}},hoverImage:function(){this.$("img").attr("src",galaxy_config.root+"static/images/fugue/asterisk-small-yellow.png")}});var DataOutputView=Backbone.View.extend({className:"form-row dataRow",initialize:function(c){this.output=c.output;this.terminalElement=c.terminalElement;this.nodeView=c.nodeView;var a=this.output;var b=a.name;var f=this.nodeView.node;var d=a.extensions.indexOf("input")>=0||a.extensions.indexOf("input_collection")>=0;if(!d){b=b+" ("+a.extensions.join(", ")+")"}this.$el.html(b);if(f.type=="tool"){var g=new OutputCalloutView({label:b,output:a,node:f,});this.$el.append(g.el);this.$el.hover(function(){g.hoverImage()},function(){g.resetImage()})}this.$el.css({position:"absolute",left:-1000,top:-1000,display:"none"});$("body").append(this.el);this.nodeView.updateMaxWidth(this.$el.outerWidth()+17);this.$el.css({position:"",left:"",top:"",display:""}).detach()}});var TerminalView=Backbone.View.extend({setupMappingView:function(b){var c=new this.terminalMappingClass({terminal:b});var a=new this.terminalMappingViewClass({model:c});a.render();b.terminalMappingView=a;this.terminalMappingView=a},terminalElements:function(){if(this.terminalMappingView){return[this.terminalMappingView.el,this.el]}else{return[this.el]}}});var BaseInputTerminalView=TerminalView.extend({className:"terminal input-terminal",initialize:function(c){var f=c.node;var a=c.input;var b=a.name;var d=this.terminalForInput(a);if(!d.multiple){this.setupMappingView(d)}this.el.terminal=d;d.node=f;d.name=b;f.input_terminals[b]=d},events:{dropinit:"onDropInit",dropstart:"onDropStart",dropend:"onDropEnd",drop:"onDrop",hover:"onHover",},onDropInit:function(b,c){var a=this.el.terminal;return $(c.drag).hasClass("output-terminal")&&a.canAccept(c.drag.terminal)},onDropStart:function(a,b){if(b.proxy.terminal){b.proxy.terminal.connectors[0].inner_color="#BBFFBB"}},onDropEnd:function(a,b){if(b.proxy.terminal){b.proxy.terminal.connectors[0].inner_color="#FFFFFF"}},onDrop:function(b,c){var a=this.el.terminal;new Connector(c.drag.terminal,a).redraw()},onHover:function(){var c=this.el;var b=c.terminal;if(b.connectors.length>0){var a=$("<div class='callout'></div>").css({display:"none"}).appendTo("body").append($("<div class='button'></div>").append($("<div/>").addClass("fa-icon-button fa fa-times").click(function(){$.each(b.connectors,function(f,d){if(d){d.destroy()}});a.remove()}))).bind("mouseleave",function(){$(this).remove()});a.css({top:$(c).offset().top-2,left:$(c).offset().left-a.width(),"padding-right":$(c).width()}).show()}},});var InputTerminalView=BaseInputTerminalView.extend({terminalMappingClass:InputTerminalMapping,terminalMappingViewClass:InputTerminalMappingView,terminalForInput:function(a){return new InputTerminal({element:this.el,input:a})},});var InputCollectionTerminalView=BaseInputTerminalView.extend({terminalMappingClass:InputCollectionTerminalMapping,terminalMappingViewClass:InputCollectionTerminalMappingView,terminalForInput:function(a){return new InputCollectionTerminal({element:this.el,input:a})},});var BaseOutputTerminalView=TerminalView.extend({className:"terminal output-terminal",initialize:function(c){var f=c.node;var a=c.output;var b=a.name;var d=this.terminalForOutput(a);this.setupMappingView(d);this.el.terminal=d;d.node=f;d.name=b;f.output_terminals[b]=d},events:{drag:"onDrag",dragstart:"onDragStart",dragend:"onDragEnd",},onDrag:function(b,c){var a=function(){var f=$(c.proxy).offsetParent().offset(),d=c.offsetX-f.left,g=c.offsetY-f.top;$(c.proxy).css({left:d,top:g});c.proxy.terminal.redraw();canvas_manager.update_viewport_overlay()};a();$("#canvas-container").get(0).scroll_panel.test(b,a)},onDragStart:function(b,f){$(f.available).addClass("input-terminal-active");workflow.check_changes_in_active_form();var a=$('<div class="drag-terminal" style="position: absolute;"></div>').appendTo("#canvas-container").get(0);a.terminal=new OutputTerminal({element:a});var g=new Connector();g.dragging=true;g.connect(this.el.terminal,a.terminal);return a},onDragEnd:function(a,b){b.proxy.terminal.connectors[0].destroy();$(b.proxy).remove();$(b.available).removeClass("input-terminal-active");$("#canvas-container").get(0).scroll_panel.stop()}});var OutputTerminalView=BaseOutputTerminalView.extend({terminalMappingClass:OutputTerminalMapping,terminalMappingViewClass:OutputTerminalMappingView,terminalForOutput:function(a){var c=a.extensions;var b=new OutputTerminal({element:this.el,datatypes:c});return b},});var OutputCollectionTerminalView=BaseOutputTerminalView.extend({terminalMappingClass:OutputCollectionTerminalMapping,terminalMappingViewClass:OutputCollectionTerminalMappingView,terminalForOutput:function(a){var c=a.collection_type;var b=new OutputCollectionTerminal({element:this.el,collection_type:c,datatypes:a.extensions});return b},});function ScrollPanel(a){this.panel=a}$.extend(ScrollPanel.prototype,{test:function(v,d){clearTimeout(this.timeout);var k=v.pageX,j=v.pageY,l=$(this.panel),c=l.position(),b=l.width(),i=l.height(),w=l.parent(),s=w.width(),a=w.height(),r=w.offset(),p=r.left,m=r.top,A=p+w.width(),u=m+w.height(),B=-(b-(s/2)),z=-(i-(a/2)),g=(s/2),f=(a/2),h=false,q=5,o=23;if(k-q<p){if(c.left<g){var n=Math.min(o,g-c.left);l.css("left",c.left+n);h=true}}else{if(k+q>A){if(c.left>B){var n=Math.min(o,c.left-B);l.css("left",c.left-n);h=true}}else{if(j-q<m){if(c.top<f){var n=Math.min(o,f-c.top);l.css("top",c.top+n);h=true}}else{if(j+q>u){if(c.top>z){var n=Math.min(o,c.top-B);l.css("top",(c.top-n)+"px");h=true}}}}}if(h){d();var l=this;this.timeout=setTimeout(function(){l.test(v,d)},50)}},stop:function(b,a){clearTimeout(this.timeout)}});function CanvasManager(b,a){this.cv=b;this.cc=this.cv.find("#canvas-container");this.oc=a.find("#overview-canvas");this.ov=a.find("#overview-viewport");this.init_drag()}$.extend(CanvasManager.prototype,{init_drag:function(){var b=this;var a=function(f,g){f=Math.min(f,b.cv.width()/2);f=Math.max(f,-b.cc.width()+b.cv.width()/2);g=Math.min(g,b.cv.height()/2);g=Math.max(g,-b.cc.height()+b.cv.height()/2);b.cc.css({left:f,top:g});b.update_viewport_overlay()};this.cc.each(function(){this.scroll_panel=new ScrollPanel(this)});var d,c;this.cv.bind("dragstart",function(){var g=$(this).offset();var f=b.cc.position();c=f.top-g.top;d=f.left-g.left}).bind("drag",function(f,g){a(g.offsetX+d,g.offsetY+c)}).bind("dragend",function(){workflow.fit_canvas_to_nodes();b.draw_overview()});this.ov.bind("drag",function(k,l){var h=b.cc.width(),n=b.cc.height(),m=b.oc.width(),j=b.oc.height(),f=$(this).offsetParent().offset(),i=l.offsetX-f.left,g=l.offsetY-f.top;a(-(i/m*h),-(g/j*n))}).bind("dragend",function(){workflow.fit_canvas_to_nodes();b.draw_overview()});$("#overview-border").bind("drag",function(g,i){var j=$(this).offsetParent();var h=j.offset();var f=Math.max(j.width()-(i.offsetX-h.left),j.height()-(i.offsetY-h.top));$(this).css({width:f,height:f});b.draw_overview()});$("#overview-border div").bind("drag",function(){})},update_viewport_overlay:function(){var b=this.cc,f=this.cv,a=this.oc,c=this.ov,d=b.width(),j=b.height(),i=a.width(),g=a.height(),h=b.position();c.css({left:-(h.left/d*i),top:-(h.top/j*g),width:(f.width()/d*i)-2,height:(f.height()/j*g)-2})},draw_overview:function(){var j=$("#overview-canvas"),m=j.parent().parent().width(),i=j.get(0).getContext("2d"),d=$("#canvas-container").width(),l=$("#canvas-container").height();var g,a,k,f;var h=this.cv.width();var b=this.cv.height();if(d<h&&l<b){k=d/h*m;f=(m-k)/2;g=l/b*m;a=(m-g)/2}else{if(d<l){a=0;g=m;k=Math.ceil(g*d/l);f=(m-k)/2}else{k=m;f=0;g=Math.ceil(k*l/d);a=(m-g)/2}}j.parent().css({left:f,top:a,width:k,height:g});j.attr("width",k);j.attr("height",g);$.each(workflow.nodes,function(t,q){i.fillStyle="#D2C099";i.strokeStyle="#D8B365";i.lineWidth=1;var s=$(q.element),n=s.position(),c=n.left/d*k,r=n.top/l*g,o=s.width()/d*k,p=s.height()/l*g;if(q.tool_errors){i.fillStyle="#FFCCCC";i.strokeStyle="#AA6666"}else{if(q.workflow_outputs!=undefined&&q.workflow_outputs.length>0){i.fillStyle="#E8A92D";i.strokeStyle="#E8A92D"}}i.fillRect(c,r,o,p);i.strokeRect(c,r,o,p)});this.update_viewport_overlay()}}); \ No newline at end of file diff -r 65ec063664eb0ce100d76d985fba93f200ac5178 -r cef33a0617405e7b3f25c79955890c72e69dc14b static/scripts/packed/mvc/collection/dataset-collection-base.js --- a/static/scripts/packed/mvc/collection/dataset-collection-base.js +++ b/static/scripts/packed/mvc/collection/dataset-collection-base.js @@ -1,1 +1,1 @@ -define(["mvc/dataset/hda-model","mvc/dataset/hda-base"],function(b,a){var c=a.HistoryContentBaseView.extend({className:"dataset hda history-panel-hda",id:function(){return"hdca-"+this.model.get("id")},initialize:function(d){if(d.logger){this.logger=this.model.logger=d.logger}this.log(this+".initialize:",d);this.selectable=d.selectable||false;this.selected=d.selected||false;this.expanded=d.expanded||false},render:function(e){var d=this._buildNewRender();this._queueNewRender(d,e);return this},templateSkeleton:function(){return['<div class="dataset hda">','<div class="dataset-warnings">',"<% if ( deleted ) { %>",'<div class="dataset-deleted-msg warningmessagesmall"><strong>',_l("This dataset has been deleted."),"</div>","<% } %>","<% if ( ! visible ) { %>",'<div class="dataset-hidden-msg warningmessagesmall"><strong>',_l("This dataset has been hidden."),"</div>","<% } %>","</div>",'<div class="dataset-selector"><span class="fa fa-2x fa-square-o"></span></div>','<div class="dataset-primary-actions"></div>','<div class="dataset-title-bar clear" tabindex="0">','<span class="dataset-state-icon state-icon"></span>','<div class="dataset-title">','<span class="hda-hid"><%= hid %></span> ','<span class="dataset-name"><%= name %></span>',"</div>","</div>",'<div class="dataset-body"></div>',"</div>"].join("")},templateBody:function(){return['<div class="dataset-body">','<div class="dataset-summary">',"A dataset collection.","</div>"].join("")},_buildNewRender:function(){var d=$(_.template(this.templateSkeleton(),this.model.toJSON()));d.find(".dataset-primary-actions").append(this._render_titleButtons());d.children(".dataset-body").replaceWith(this._render_body());this._setUpBehaviors(d);return d},_render_titleButtons:function(){return[]},_render_body:function(){var e=$('<div>Error: unknown state "'+this.model.get("state")+'".</div>'),d=this["_render_body_"+this.model.get("state")];if(_.isFunction(d)){e=d.call(this)}this._setUpBehaviors(e);if(this.expanded){e.show()}return e},_setUpBehaviors:function(d){d=d||this.$el;make_popup_menus(d);d.find("[title]").tooltip({placement:"bottom"})},events:{"click .dataset-title-bar":"toggleBodyVisibility","keydown .dataset-title-bar":"toggleBodyVisibility","click .dataset-selector":"toggleSelect"},expandBody:function(){var d=this;function e(){d.$el.children(".dataset-body").replaceWith(d._render_body());d.$el.children(".dataset-body").slideDown(d.fxSpeed,function(){d.expanded=true;d.trigger("body-expanded",d.model)})}e()},collapseBody:function(){var d=this;this.$el.children(".dataset-body").slideUp(d.fxSpeed,function(){d.expanded=false;d.trigger("body-collapsed",d.model.id)})},_render_body_ok:function(){var d=$(_.template(this.templateBody(),this.model.toJSON()));if(this.model.get("deleted")){return d}return d}});return{DatasetCollectionBaseView:c}}); \ No newline at end of file +define(["mvc/history/history-content-base-view","utils/localization"],function(e,b){var c=e.HistoryContentBaseView.extend({className:"dataset hda history-panel-hda",id:function(){return"hdca-"+this.model.get("id")},initialize:function(f){if(f.logger){this.logger=this.model.logger=f.logger}this.log(this+".initialize:",f);this.selectable=f.selectable||false;this.selected=f.selected||false;this.expanded=f.expanded||false},render:function(g){var f=this._buildNewRender();this._queueNewRender(f,g);return this},_buildNewRender:function(){var f=$(c.templates.skeleton(this.model.toJSON()));f.find(".dataset-primary-actions").append(this._render_titleButtons());f.children(".dataset-body").replaceWith(this._render_body());this._setUpBehaviors(f);return f},_queueNewRender:function(g,h){h=(h===undefined)?(true):(h);var f=this;if(h){$(f).queue(function(i){this.$el.fadeOut(f.fxSpeed,i)})}$(f).queue(function(i){this.$el.empty().attr("class",f.className).addClass("state-"+f.model.get("state")).append(g.children());if(this.selectable){this.showSelector(0)}i()});if(h){$(f).queue(function(i){this.$el.fadeIn(f.fxSpeed,i)})}$(f).queue(function(i){this.trigger("rendered",f);if(this.model.inReadyState()){this.trigger("rendered:ready",f)}if(this.draggable){this.draggableOn()}i()})},_render_titleButtons:function(){return[]},_render_body:function(){var g=$('<div>Error: unknown state "'+this.model.get("state")+'".</div>'),f=this["_render_body_"+this.model.get("state")];if(_.isFunction(f)){g=f.call(this)}this._setUpBehaviors(g);if(this.expanded){g.show()}return g},_setUpBehaviors:function(f){f=f||this.$el;make_popup_menus(f);f.find("[title]").tooltip({placement:"bottom"})},events:{"click .dataset-title-bar":"toggleBodyVisibility","keydown .dataset-title-bar":"toggleBodyVisibility","click .dataset-selector":"toggleSelect"},toggleBodyVisibility:function(i,g){var f=32,h=13;if(i&&(i.type==="keydown")&&!(i.keyCode===f||i.keyCode===h)){return true}var j=this.$el.find(".dataset-body");g=(g===undefined)?(!j.is(":visible")):(g);if(g){this.expandBody()}else{this.collapseBody()}return false},expandBody:function(){var f=this;function g(){f.$el.children(".dataset-body").replaceWith(f._render_body());f.$el.children(".dataset-body").slideDown(f.fxSpeed,function(){f.expanded=true;f.trigger("body-expanded",f.model)})}g()},collapseBody:function(){var f=this;this.$el.children(".dataset-body").slideUp(f.fxSpeed,function(){f.expanded=false;f.trigger("body-collapsed",f.model.id)})},_render_body_ok:function(){var f=$(c.templates.body(this.model.toJSON()));if(this.model.get("deleted")){return f}return f},showSelector:function(){if(this.selected){this.select(null,true)}this.selectable=true;this.trigger("selectable",true,this);this.$(".dataset-primary-actions").hide();this.$(".dataset-selector").show()},hideSelector:function(){this.selectable=false;this.trigger("selectable",false,this);this.$(".dataset-selector").hide();this.$(".dataset-primary-actions").show()},toggleSelector:function(){if(!this.$el.find(".dataset-selector").is(":visible")){this.showSelector()}else{this.hideSelector()}},select:function(f){this.$el.find(".dataset-selector span").removeClass("fa-square-o").addClass("fa-check-square-o");if(!this.selected){this.trigger("selected",this,f);this.selected=true}return false},deselect:function(f){this.$el.find(".dataset-selector span").removeClass("fa-check-square-o").addClass("fa-square-o");if(this.selected){this.trigger("de-selected",this,f);this.selected=false}return false},toggleSelect:function(f){if(this.selected){this.deselect(f)}else{this.select(f)}},toString:function(){var f=(this.model)?(this.model+""):("(no model)");return"HDCABaseView("+f+")"}});var a=_.template(['<div class="dataset hda">','<div class="dataset-warnings">',"<% if ( collection.deleted ) { %>",'<div class="dataset-deleted-msg warningmessagesmall"><strong>',b("This collection has been deleted."),"</div>","<% } %>","<% if ( !collection.visible ) { %>",'<div class="dataset-hidden-msg warningmessagesmall"><strong>',b("This collection has been hidden."),"</div>","<% } %>","</div>",'<div class="dataset-selector"><span class="fa fa-2x fa-square-o"></span></div>','<div class="dataset-primary-actions"></div>','<div class="dataset-title-bar clear" tabindex="0">','<span class="dataset-state-icon state-icon"></span>','<div class="dataset-title">','<span class="hda-hid"><%= collection.hid %></span> ','<span class="dataset-name"><%= collection.name %></span>',"</div>","</div>",'<div class="dataset-body"></div>',"</div>"].join(""));var d=_.template(['<div class="dataset-body">','<div class="dataset-summary">',b("A dataset collection."),"</div>"].join(""));c.templates={skeleton:function(f){return a({_l:b,collection:f})},body:function(f){return d({_l:b,collection:f})}};return{DatasetCollectionBaseView:c}}); \ No newline at end of file diff -r 65ec063664eb0ce100d76d985fba93f200ac5178 -r cef33a0617405e7b3f25c79955890c72e69dc14b static/scripts/packed/mvc/collection/dataset-collection-edit.js --- a/static/scripts/packed/mvc/collection/dataset-collection-edit.js +++ b/static/scripts/packed/mvc/collection/dataset-collection-edit.js @@ -1,1 +1,1 @@ -define(["mvc/dataset/hda-model","mvc/collection/dataset-collection-base",],function(b,c){var a=c.DatasetCollectionBaseView.extend({initialize:function(d){c.DatasetCollectionBaseView.prototype.initialize.call(this,d)},_render_titleButtons:function(){return c.DatasetCollectionBaseView.prototype._render_titleButtons.call(this).concat([this._render_deleteButton()])},_render_deleteButton:function(){if((this.model.get("state")===b.HistoryDatasetAssociation.STATES.NEW)||(this.model.get("state")===b.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(!this.model.get("accessible"))){return null}var d=this,e={title:_l("Delete"),classes:"dataset-delete",onclick:function(){d.$el.find(".icon-btn.dataset-delete").trigger("mouseout");d.model["delete"]()}};if(this.model.get("deleted")){e={title:_l("Dataset collection is already deleted"),disabled:true}}e.faIcon="fa-times";return faIconButton(e)}});return{DatasetCollectionEditView:a}}); \ No newline at end of file +define(["mvc/dataset/hda-model","mvc/collection/dataset-collection-base","utils/localization"],function(c,d,b){var a=d.DatasetCollectionBaseView.extend({initialize:function(e){d.DatasetCollectionBaseView.prototype.initialize.call(this,e)},_render_titleButtons:function(){return d.DatasetCollectionBaseView.prototype._render_titleButtons.call(this).concat([this._render_deleteButton()])},_render_deleteButton:function(){if((this.model.get("state")===c.HistoryDatasetAssociation.STATES.NEW)||(this.model.get("state")===c.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(!this.model.get("accessible"))){return null}var e=this,f={title:b("Delete"),classes:"dataset-delete",onclick:function(){e.$el.find(".icon-btn.dataset-delete").trigger("mouseout");e.model["delete"]()}};if(this.model.get("deleted")){f={title:b("Dataset collection is already deleted"),disabled:true}}f.faIcon="fa-times";return faIconButton(f)},toString:function(){var e=(this.model)?(this.model+""):("(no model)");return"HDCAEditView("+e+")"}});return{DatasetCollectionEditView:a}}); \ No newline at end of file diff -r 65ec063664eb0ce100d76d985fba93f200ac5178 -r cef33a0617405e7b3f25c79955890c72e69dc14b static/scripts/packed/mvc/dataset/hda-base.js --- a/static/scripts/packed/mvc/dataset/hda-base.js +++ b/static/scripts/packed/mvc/dataset/hda-base.js @@ -1,1 +1,1 @@ -define(["mvc/dataset/hda-model","mvc/base-mvc","mvc/data","utils/localization"],function(e,b,g,d){var h=Backbone.View.extend(b.LoggableMixin).extend({tagName:"div",fxSpeed:"fast",_queueNewRender:function(j,k){k=(k===undefined)?(true):(k);var i=this;if(k){$(i).queue(function(l){this.$el.fadeOut(i.fxSpeed,l)})}$(i).queue(function(l){this.$el.empty().attr("class",i.className).addClass("state-"+i.model.get("state")).append(j.children());if(this.selectable){this.showSelector(0)}l()});if(k){$(i).queue(function(l){this.$el.fadeIn(i.fxSpeed,l)})}$(i).queue(function(l){this.trigger("rendered",i);if(this.model.inReadyState()){this.trigger("rendered:ready",i)}if(this.draggable){this.draggableOn()}l()})},toggleBodyVisibility:function(l,j){var i=32,k=13;if(l&&(l.type==="keydown")&&!(l.keyCode===i||l.keyCode===k)){return true}var m=this.$el.find(".dataset-body");j=(j===undefined)?(!m.is(":visible")):(j);if(j){this.expandBody()}else{this.collapseBody()}return false},showSelector:function(){if(this.selected){this.select(null,true)}this.selectable=true;this.trigger("selectable",true,this);this.$(".dataset-primary-actions").hide();this.$(".dataset-selector").show()},hideSelector:function(){this.selectable=false;this.trigger("selectable",false,this);this.$(".dataset-selector").hide();this.$(".dataset-primary-actions").show()},toggleSelector:function(){if(!this.$el.find(".dataset-selector").is(":visible")){this.showSelector()}else{this.hideSelector()}},select:function(i){this.$el.find(".dataset-selector span").removeClass("fa-square-o").addClass("fa-check-square-o");if(!this.selected){this.trigger("selected",this,i);this.selected=true}return false},deselect:function(i){this.$el.find(".dataset-selector span").removeClass("fa-check-square-o").addClass("fa-square-o");if(this.selected){this.trigger("de-selected",this,i);this.selected=false}return false},toggleSelect:function(i){if(this.selected){this.deselect(i)}else{this.select(i)}}});var c=h.extend({className:"dataset hda history-panel-hda",id:function(){return"hda-"+this.model.get("id")},initialize:function(i){if(i.logger){this.logger=this.model.logger=i.logger}this.log(this+".initialize:",i);this.defaultPrimaryActionButtonRenderers=[this._render_showParamsButton];this.linkTarget=i.linkTarget||"_blank";this.selectable=i.selectable||false;this.selected=i.selected||false;this.expanded=i.expanded||false;this.draggable=i.draggable||false;this._setUpListeners()},_setUpListeners:function(){this.model.on("change",function(j,i){if(this.model.changedAttributes().state&&this.model.inReadyState()&&this.expanded&&!this.model.hasDetails()){this.model.fetch()}else{this.render()}},this)},render:function(j){this.$el.find("[title]").tooltip("destroy");this.urls=this.model.urls();var i=this._buildNewRender();this._queueNewRender(i,j);return this},_buildNewRender:function(){var i=$(c.templates.skeleton(this.model.toJSON()));i.find(".dataset-primary-actions").append(this._render_titleButtons());i.children(".dataset-body").replaceWith(this._render_body());this._setUpBehaviors(i);return i},_setUpBehaviors:function(i){i=i||this.$el;make_popup_menus(i);i.find("[title]").tooltip({placement:"bottom"})},_render_titleButtons:function(){return[this._render_displayButton()]},_render_displayButton:function(){if((this.model.get("state")===e.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(this.model.get("state")===e.HistoryDatasetAssociation.STATES.DISCARDED)||(!this.model.get("accessible"))){return null}var j={target:this.linkTarget,classes:"dataset-display"};if(this.model.get("purged")){j.disabled=true;j.title=d("Cannot display datasets removed from disk")}else{if(this.model.get("state")===e.HistoryDatasetAssociation.STATES.UPLOAD){j.disabled=true;j.title=d("This dataset must finish uploading before it can be viewed")}else{if(this.model.get("state")===e.HistoryDatasetAssociation.STATES.NEW){j.disabled=true;j.title=d("This dataset is not yet viewable")}else{j.title=d("View data");j.href=this.urls.display;var i=this;j.onclick=function(k){if(Galaxy.frame&&Galaxy.frame.active){Galaxy.frame.add({title:"Data Viewer: "+i.model.get("name"),type:"other",content:function(l){var m=new g.TabularDataset({id:i.model.get("id")});$.when(m.fetch()).then(function(){g.createTabularDatasetChunkedView({model:m,parent_elt:l,embedded:true,height:"100%"})})}});k.preventDefault()}}}}}j.faIcon="fa-eye";return faIconButton(j)},_render_downloadButton:function(){if(this.model.get("purged")||!this.model.hasData()){return null}var j=this.urls,k=this.model.get("meta_files");if(_.isEmpty(k)){return $(['<a href="'+j.download+'" title="'+d("Download")+'" ','class="icon-btn dataset-download-btn">','<span class="fa fa-floppy-o"></span>',"</a>"].join(""))}var l="dataset-"+this.model.get("id")+"-popup",i=['<div popupmenu="'+l+'">','<a href="'+j.download+'">',d("Download dataset"),"</a>","<a>"+d("Additional files")+"</a>",_.map(k,function(m){return['<a class="action-button" href="',j.meta_download+m.file_type,'">',d("Download")," ",m.file_type,"</a>"].join("")}).join("\n"),"</div>",'<div class="icon-btn-group">','<a href="'+j.download+'" title="'+d("Download")+'" ','class="icon-btn dataset-download-btn">','<span class="fa fa-floppy-o"></span>','</a><a class="icon-btn popup" id="'+l+'">','<span class="fa fa-caret-down"></span>',"</a>","</div>"].join("\n");return $(i)},_render_showParamsButton:function(){return faIconButton({title:d("View details"),classes:"dataset-params-btn",href:this.urls.show_params,target:this.linkTarget,faIcon:"fa-info-circle"})},_render_body:function(){var j=$('<div>Error: unknown dataset state "'+this.model.get("state")+'".</div>'),i=this["_render_body_"+this.model.get("state")];if(_.isFunction(i)){j=i.call(this)}this._setUpBehaviors(j);if(this.expanded){j.show()}return j},_render_stateBodyHelper:function(i,l){l=l||[];var j=this,k=$(c.templates.body(_.extend(this.model.toJSON(),{body:i})));k.find(".dataset-actions .left").append(_.map(l,function(m){return m.call(j)}));return k},_render_body_new:function(){return this._render_stateBodyHelper("<div>"+d("This is a new dataset and not all of its data are available yet")+"</div>",this.defaultPrimaryActionButtonRenderers)},_render_body_noPermission:function(){return this._render_stateBodyHelper("<div>"+d("You do not have permission to view this dataset")+"</div>")},_render_body_discarded:function(){return this._render_stateBodyHelper("<div>"+d("The job creating this dataset was cancelled before completion")+"</div>",this.defaultPrimaryActionButtonRenderers)},_render_body_queued:function(){return this._render_stateBodyHelper("<div>"+d("This job is waiting to run")+"</div>",this.defaultPrimaryActionButtonRenderers)},_render_body_upload:function(){return this._render_stateBodyHelper("<div>"+d("This dataset is currently uploading")+"</div>")},_render_body_setting_metadata:function(){return this._render_stateBodyHelper("<div>"+d("Metadata is being auto-detected")+"</div>")},_render_body_running:function(){return this._render_stateBodyHelper("<div>"+d("This job is currently running")+"</div>",this.defaultPrimaryActionButtonRenderers)},_render_body_paused:function(){return this._render_stateBodyHelper("<div>"+d('This job is paused. Use the "Resume Paused Jobs" in the history menu to resume')+"</div>",this.defaultPrimaryActionButtonRenderers)},_render_body_error:function(){var i=['<span class="help-text">',d("An error occurred with this dataset"),":</span>",'<div class="job-error-text">',$.trim(this.model.get("misc_info")),"</div>"].join("");if(!this.model.get("purged")){i="<div>"+this.model.get("misc_blurb")+"</div>"+i}return this._render_stateBodyHelper(i,[this._render_downloadButton].concat(this.defaultPrimaryActionButtonRenderers))},_render_body_empty:function(){return this._render_stateBodyHelper("<div>"+d("No data")+": <i>"+this.model.get("misc_blurb")+"</i></div>",this.defaultPrimaryActionButtonRenderers)},_render_body_failed_metadata:function(){var i=$('<div class="warningmessagesmall"></div>').append($("<strong/>").text(d("An error occurred setting the metadata for this dataset"))),j=this._render_body_ok();j.prepend(i);return j},_render_body_ok:function(){var i=this,k=$(c.templates.body(this.model.toJSON())),j=[this._render_downloadButton].concat(this.defaultPrimaryActionButtonRenderers);k.find(".dataset-actions .left").append(_.map(j,function(l){return l.call(i)}));if(this.model.isDeletedOrPurged()){return k}return k},events:{"click .dataset-title-bar":"toggleBodyVisibility","keydown .dataset-title-bar":"toggleBodyVisibility","click .dataset-selector":"toggleSelect"},expandBody:function(){var i=this;function j(){i.$el.children(".dataset-body").replaceWith(i._render_body());i.$el.children(".dataset-body").slideDown(i.fxSpeed,function(){i.expanded=true;i.trigger("body-expanded",i.model)})}if(this.model.inReadyState()&&!this.model.hasDetails()){this.model.fetch({silent:true}).always(function(k){i.urls=i.model.urls();j()})}else{j()}},collapseBody:function(){var i=this;this.$el.children(".dataset-body").slideUp(i.fxSpeed,function(){i.expanded=false;i.trigger("body-collapsed",i.model.id)})},draggableOn:function(){this.draggable=true;this.dragStartHandler=_.bind(this._dragStartHandler,this);this.dragEndHandler=_.bind(this._dragEndHandler,this);var i=this.$el.find(".dataset-title-bar").attr("draggable",true).get(0);i.addEventListener("dragstart",this.dragStartHandler,false);i.addEventListener("dragend",this.dragEndHandler,false)},draggableOff:function(){this.draggable=false;var i=this.$el.find(".dataset-title-bar").attr("draggable",false).get(0);i.removeEventListener("dragstart",this.dragStartHandler,false);i.removeEventListener("dragend",this.dragEndHandler,false)},toggleDraggable:function(){if(this.draggable){this.draggableOff()}else{this.draggableOn()}},_dragStartHandler:function(i){this.trigger("dragstart",this);i.dataTransfer.effectAllowed="move";i.dataTransfer.setData("text",JSON.stringify(this.model.toJSON()));return false},_dragEndHandler:function(i){this.trigger("dragend",this);return false},remove:function(j){var i=this;this.$el.fadeOut(i.fxSpeed,function(){i.$el.remove();i.off();if(j){j()}})},toString:function(){var i=(this.model)?(this.model+""):("(no model)");return"HDABaseView("+i+")"}});var a=_.template(['<div class="dataset hda">','<div class="dataset-warnings">',"<% if( hda.error ){ %>",'<div class="errormessagesmall">',d("There was an error getting the data for this dataset"),":<%- hda.error %>","</div>","<% } %>","<% if( hda.deleted ){ %>","<% if( hda.purged ){ %>",'<div class="dataset-purged-msg warningmessagesmall"><strong>',d("This dataset has been deleted and removed from disk")+".","</strong></div>","<% } else { %>",'<div class="dataset-deleted-msg warningmessagesmall"><strong>',d("This dataset has been deleted")+".","</strong></div>","<% } %>","<% } %>","<% if( !hda.visible ){ %>",'<div class="dataset-hidden-msg warningmessagesmall"><strong>',d("This dataset has been hidden")+".","</strong></div>","<% } %>","</div>",'<div class="dataset-selector">','<span class="fa fa-2x fa-square-o"></span>',"</div>",'<div class="dataset-primary-actions"></div>','<div class="dataset-title-bar clear" tabindex="0">','<span class="dataset-state-icon state-icon"></span>','<div class="dataset-title">','<span class="hda-hid"><%- hda.hid %></span> ','<span class="dataset-name"><%- hda.name %></span>',"</div>","</div>",'<div class="dataset-body"></div>',"</div>"].join(""));var f=_.template(['<div class="dataset-body">',"<% if( hda.body ){ %>",'<div class="dataset-summary">',"<%= hda.body %>","</div>",'<div class="dataset-actions clear">','<div class="left"></div>','<div class="right"></div>',"</div>","<% } else { %>",'<div class="dataset-summary">',"<% if( hda.misc_blurb ){ %>",'<div class="dataset-blurb">','<span class="value"><%- hda.misc_blurb %></span>',"</div>","<% } %>","<% if( hda.data_type ){ %>",'<div class="dataset-datatype">','<label class="prompt">',d("format"),"</label>",'<span class="value"><%- hda.data_type %></span>',"</div>","<% } %>","<% if( hda.metadata_dbkey ){ %>",'<div class="dataset-dbkey">','<label class="prompt">',d("database"),"</label>",'<span class="value">',"<%- hda.metadata_dbkey %>","</span>","</div>","<% } %>","<% if( hda.misc_info ){ %>",'<div class="dataset-info">','<span class="value"><%- hda.misc_info %></span>',"</div>","<% } %>","</div>",'<div class="dataset-actions clear">','<div class="left"></div>','<div class="right"></div>',"</div>","<% if( !hda.deleted ){ %>",'<div class="tags-display"></div>','<div class="annotation-display"></div>','<div class="dataset-display-applications">',"<% _.each( hda.display_apps, function( app ){ %>",'<div class="display-application">','<span class="display-application-location"><%- app.label %></span> ','<span class="display-application-links">',"<% _.each( app.links, function( link ){ %>",'<a target="<%= link.target %>" href="<%= link.href %>">',"<% print( _l( link.text ) ); %>","</a> ","<% }); %>","</span>","</div>","<% }); %>","<% _.each( hda.display_types, function( app ){ %>",'<div class="display-application">','<span class="display-application-location"><%- app.label %></span> ','<span class="display-application-links">',"<% _.each( app.links, function( link ){ %>",'<a target="<%= link.target %>" href="<%= link.href %>">',"<% print( _l( link.text ) ); %>","</a> ","<% }); %>","</span>","</div>","<% }); %>","</div>",'<div class="dataset-peek">',"<% if( hda.peek ){ %>",'<pre class="peek"><%= hda.peek %></pre>',"<% } %>","</div>","<% } %>","<% } %>","</div>"].join(""));c.templates={skeleton:function(i){return a({_l:d,hda:i})},body:function(i){return f({_l:d,hda:i})}};return{HistoryContentBaseView:h,HDABaseView:c}}); \ No newline at end of file +define(["mvc/dataset/hda-model","mvc/history/history-content-base-view","mvc/data","utils/localization"],function(d,g,f,c){var b=g.HistoryContentBaseView.extend({tagName:"div",className:"dataset hda history-panel-hda",id:function(){return"hda-"+this.model.get("id")},fxSpeed:"fast",initialize:function(h){if(h.logger){this.logger=this.model.logger=h.logger}this.log(this+".initialize:",h);this.defaultPrimaryActionButtonRenderers=[this._render_showParamsButton];this.linkTarget=h.linkTarget||"_blank";this.selectable=h.selectable||false;this.selected=h.selected||false;this.expanded=h.expanded||false;this.draggable=h.draggable||false;this._setUpListeners()},_setUpListeners:function(){this.model.on("change",function(i,h){if(this.model.changedAttributes().state&&this.model.inReadyState()&&this.expanded&&!this.model.hasDetails()){this.model.fetch()}else{this.render()}},this)},render:function(i){this.$el.find("[title]").tooltip("destroy");this.urls=this.model.urls();var h=this._buildNewRender();this._queueNewRender(h,i);return this},_buildNewRender:function(){var h=$(b.templates.skeleton(this.model.toJSON()));h.find(".dataset-primary-actions").append(this._render_titleButtons());h.children(".dataset-body").replaceWith(this._render_body());this._setUpBehaviors(h);return h},_queueNewRender:function(i,j){j=(j===undefined)?(true):(j);var h=this;if(j){$(h).queue(function(k){this.$el.fadeOut(h.fxSpeed,k)})}$(h).queue(function(k){this.$el.empty().attr("class",h.className).addClass("state-"+h.model.get("state")).append(i.children());if(this.selectable){this.showSelector(0)}k()});if(j){$(h).queue(function(k){this.$el.fadeIn(h.fxSpeed,k)})}$(h).queue(function(k){this.trigger("rendered",h);if(this.model.inReadyState()){this.trigger("rendered:ready",h)}if(this.draggable){this.draggableOn()}k()})},_setUpBehaviors:function(h){h=h||this.$el;make_popup_menus(h);h.find("[title]").tooltip({placement:"bottom"})},_render_titleButtons:function(){return[this._render_displayButton()]},_render_displayButton:function(){if((this.model.get("state")===d.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(this.model.get("state")===d.HistoryDatasetAssociation.STATES.DISCARDED)||(!this.model.get("accessible"))){return null}var i={target:this.linkTarget,classes:"dataset-display"};if(this.model.get("purged")){i.disabled=true;i.title=c("Cannot display datasets removed from disk")}else{if(this.model.get("state")===d.HistoryDatasetAssociation.STATES.UPLOAD){i.disabled=true;i.title=c("This dataset must finish uploading before it can be viewed")}else{if(this.model.get("state")===d.HistoryDatasetAssociation.STATES.NEW){i.disabled=true;i.title=c("This dataset is not yet viewable")}else{i.title=c("View data");i.href=this.urls.display;var h=this;i.onclick=function(j){if(Galaxy.frame&&Galaxy.frame.active){Galaxy.frame.add({title:"Data Viewer: "+h.model.get("name"),type:"other",content:function(k){var l=new f.TabularDataset({id:h.model.get("id")});$.when(l.fetch()).then(function(){f.createTabularDatasetChunkedView({model:l,parent_elt:k,embedded:true,height:"100%"})})}});j.preventDefault()}}}}}i.faIcon="fa-eye";return faIconButton(i)},_render_downloadButton:function(){if(this.model.get("purged")||!this.model.hasData()){return null}var i=this.urls,j=this.model.get("meta_files");if(_.isEmpty(j)){return $(['<a href="'+i.download+'" title="'+c("Download")+'" ','class="icon-btn dataset-download-btn">','<span class="fa fa-floppy-o"></span>',"</a>"].join(""))}var k="dataset-"+this.model.get("id")+"-popup",h=['<div popupmenu="'+k+'">','<a href="'+i.download+'">',c("Download dataset"),"</a>","<a>"+c("Additional files")+"</a>",_.map(j,function(l){return['<a class="action-button" href="',i.meta_download+l.file_type,'">',c("Download")," ",l.file_type,"</a>"].join("")}).join("\n"),"</div>",'<div class="icon-btn-group">','<a href="'+i.download+'" title="'+c("Download")+'" ','class="icon-btn dataset-download-btn">','<span class="fa fa-floppy-o"></span>','</a><a class="icon-btn popup" id="'+k+'">','<span class="fa fa-caret-down"></span>',"</a>","</div>"].join("\n");return $(h)},_render_showParamsButton:function(){return faIconButton({title:c("View details"),classes:"dataset-params-btn",href:this.urls.show_params,target:this.linkTarget,faIcon:"fa-info-circle"})},_render_body:function(){var i=$('<div>Error: unknown dataset state "'+this.model.get("state")+'".</div>'),h=this["_render_body_"+this.model.get("state")];if(_.isFunction(h)){i=h.call(this)}this._setUpBehaviors(i);if(this.expanded){i.show()}return i},_render_stateBodyHelper:function(h,k){k=k||[];var i=this,j=$(b.templates.body(_.extend(this.model.toJSON(),{body:h})));j.find(".dataset-actions .left").append(_.map(k,function(l){return l.call(i)}));return j},_render_body_new:function(){return this._render_stateBodyHelper("<div>"+c("This is a new dataset and not all of its data are available yet")+"</div>",this.defaultPrimaryActionButtonRenderers)},_render_body_noPermission:function(){return this._render_stateBodyHelper("<div>"+c("You do not have permission to view this dataset")+"</div>")},_render_body_discarded:function(){return this._render_stateBodyHelper("<div>"+c("The job creating this dataset was cancelled before completion")+"</div>",this.defaultPrimaryActionButtonRenderers)},_render_body_queued:function(){return this._render_stateBodyHelper("<div>"+c("This job is waiting to run")+"</div>",this.defaultPrimaryActionButtonRenderers)},_render_body_upload:function(){return this._render_stateBodyHelper("<div>"+c("This dataset is currently uploading")+"</div>")},_render_body_setting_metadata:function(){return this._render_stateBodyHelper("<div>"+c("Metadata is being auto-detected")+"</div>")},_render_body_running:function(){return this._render_stateBodyHelper("<div>"+c("This job is currently running")+"</div>",this.defaultPrimaryActionButtonRenderers)},_render_body_paused:function(){return this._render_stateBodyHelper("<div>"+c('This job is paused. Use the "Resume Paused Jobs" in the history menu to resume')+"</div>",this.defaultPrimaryActionButtonRenderers)},_render_body_error:function(){var h=['<span class="help-text">',c("An error occurred with this dataset"),":</span>",'<div class="job-error-text">',$.trim(this.model.get("misc_info")),"</div>"].join("");if(!this.model.get("purged")){h="<div>"+this.model.get("misc_blurb")+"</div>"+h}return this._render_stateBodyHelper(h,[this._render_downloadButton].concat(this.defaultPrimaryActionButtonRenderers))},_render_body_empty:function(){return this._render_stateBodyHelper("<div>"+c("No data")+": <i>"+this.model.get("misc_blurb")+"</i></div>",this.defaultPrimaryActionButtonRenderers)},_render_body_failed_metadata:function(){var h=$('<div class="warningmessagesmall"></div>').append($("<strong/>").text(c("An error occurred setting the metadata for this dataset"))),i=this._render_body_ok();i.prepend(h);return i},_render_body_ok:function(){var h=this,j=$(b.templates.body(this.model.toJSON())),i=[this._render_downloadButton].concat(this.defaultPrimaryActionButtonRenderers);j.find(".dataset-actions .left").append(_.map(i,function(k){return k.call(h)}));if(this.model.isDeletedOrPurged()){return j}return j},events:{"click .dataset-title-bar":"toggleBodyVisibility","keydown .dataset-title-bar":"toggleBodyVisibility","click .dataset-selector":"toggleSelect"},toggleBodyVisibility:function(k,i){var h=32,j=13;if(k&&(k.type==="keydown")&&!(k.keyCode===h||k.keyCode===j)){return true}var l=this.$el.find(".dataset-body");i=(i===undefined)?(!l.is(":visible")):(i);if(i){this.expandBody()}else{this.collapseBody()}return false},expandBody:function(){var h=this;function i(){h.$el.children(".dataset-body").replaceWith(h._render_body());h.$el.children(".dataset-body").slideDown(h.fxSpeed,function(){h.expanded=true;h.trigger("body-expanded",h.model)})}if(this.model.inReadyState()&&!this.model.hasDetails()){this.model.fetch({silent:true}).always(function(j){h.urls=h.model.urls();i()})}else{i()}},collapseBody:function(){var h=this;this.$el.children(".dataset-body").slideUp(h.fxSpeed,function(){h.expanded=false;h.trigger("body-collapsed",h.model.id)})},showSelector:function(){if(this.selected){this.select(null,true)}this.selectable=true;this.trigger("selectable",true,this);this.$(".dataset-primary-actions").hide();this.$(".dataset-selector").show()},hideSelector:function(){this.selectable=false;this.trigger("selectable",false,this);this.$(".dataset-selector").hide();this.$(".dataset-primary-actions").show()},toggleSelector:function(){if(!this.$el.find(".dataset-selector").is(":visible")){this.showSelector()}else{this.hideSelector()}},select:function(h){this.$el.find(".dataset-selector span").removeClass("fa-square-o").addClass("fa-check-square-o");if(!this.selected){this.trigger("selected",this,h);this.selected=true}return false},deselect:function(h){this.$el.find(".dataset-selector span").removeClass("fa-check-square-o").addClass("fa-square-o");if(this.selected){this.trigger("de-selected",this,h);this.selected=false}return false},toggleSelect:function(h){if(this.selected){this.deselect(h)}else{this.select(h)}},draggableOn:function(){this.draggable=true;this.dragStartHandler=_.bind(this._dragStartHandler,this);this.dragEndHandler=_.bind(this._dragEndHandler,this);var h=this.$el.find(".dataset-title-bar").attr("draggable",true).get(0);h.addEventListener("dragstart",this.dragStartHandler,false);h.addEventListener("dragend",this.dragEndHandler,false)},draggableOff:function(){this.draggable=false;var h=this.$el.find(".dataset-title-bar").attr("draggable",false).get(0);h.removeEventListener("dragstart",this.dragStartHandler,false);h.removeEventListener("dragend",this.dragEndHandler,false)},toggleDraggable:function(){if(this.draggable){this.draggableOff()}else{this.draggableOn()}},_dragStartHandler:function(h){this.trigger("dragstart",this);h.dataTransfer.effectAllowed="move";h.dataTransfer.setData("text",JSON.stringify(this.model.toJSON()));return false},_dragEndHandler:function(h){this.trigger("dragend",this);return false},remove:function(i){var h=this;this.$el.fadeOut(h.fxSpeed,function(){h.$el.remove();h.off();if(i){i()}})},toString:function(){var h=(this.model)?(this.model+""):("(no model)");return"HDABaseView("+h+")"}});var a=_.template(['<div class="dataset hda">','<div class="dataset-warnings">',"<% if( hda.error ){ %>",'<div class="errormessagesmall">',c("There was an error getting the data for this dataset"),":<%- hda.error %>","</div>","<% } %>","<% if( hda.deleted ){ %>","<% if( hda.purged ){ %>",'<div class="dataset-purged-msg warningmessagesmall"><strong>',c("This dataset has been deleted and removed from disk")+".","</strong></div>","<% } else { %>",'<div class="dataset-deleted-msg warningmessagesmall"><strong>',c("This dataset has been deleted")+".","</strong></div>","<% } %>","<% } %>","<% if( !hda.visible ){ %>",'<div class="dataset-hidden-msg warningmessagesmall"><strong>',c("This dataset has been hidden")+".","</strong></div>","<% } %>","</div>",'<div class="dataset-selector">','<span class="fa fa-2x fa-square-o"></span>',"</div>",'<div class="dataset-primary-actions"></div>','<div class="dataset-title-bar clear" tabindex="0">','<span class="dataset-state-icon state-icon"></span>','<div class="dataset-title">','<span class="hda-hid"><%- hda.hid %></span> ','<span class="dataset-name"><%- hda.name %></span>',"</div>","</div>",'<div class="dataset-body"></div>',"</div>"].join(""));var e=_.template(['<div class="dataset-body">',"<% if( hda.body ){ %>",'<div class="dataset-summary">',"<%= hda.body %>","</div>",'<div class="dataset-actions clear">','<div class="left"></div>','<div class="right"></div>',"</div>","<% } else { %>",'<div class="dataset-summary">',"<% if( hda.misc_blurb ){ %>",'<div class="dataset-blurb">','<span class="value"><%- hda.misc_blurb %></span>',"</div>","<% } %>","<% if( hda.data_type ){ %>",'<div class="dataset-datatype">','<label class="prompt">',c("format"),"</label>",'<span class="value"><%- hda.data_type %></span>',"</div>","<% } %>","<% if( hda.metadata_dbkey ){ %>",'<div class="dataset-dbkey">','<label class="prompt">',c("database"),"</label>",'<span class="value">',"<%- hda.metadata_dbkey %>","</span>","</div>","<% } %>","<% if( hda.misc_info ){ %>",'<div class="dataset-info">','<span class="value"><%- hda.misc_info %></span>',"</div>","<% } %>","</div>",'<div class="dataset-actions clear">','<div class="left"></div>','<div class="right"></div>',"</div>","<% if( !hda.deleted ){ %>",'<div class="tags-display"></div>','<div class="annotation-display"></div>','<div class="dataset-display-applications">',"<% _.each( hda.display_apps, function( app ){ %>",'<div class="display-application">','<span class="display-application-location"><%- app.label %></span> ','<span class="display-application-links">',"<% _.each( app.links, function( link ){ %>",'<a target="<%= link.target %>" href="<%= link.href %>">',"<% print( _l( link.text ) ); %>","</a> ","<% }); %>","</span>","</div>","<% }); %>","<% _.each( hda.display_types, function( app ){ %>",'<div class="display-application">','<span class="display-application-location"><%- app.label %></span> ','<span class="display-application-links">',"<% _.each( app.links, function( link ){ %>",'<a target="<%= link.target %>" href="<%= link.href %>">',"<% print( _l( link.text ) ); %>","</a> ","<% }); %>","</span>","</div>","<% }); %>","</div>",'<div class="dataset-peek">',"<% if( hda.peek ){ %>",'<pre class="peek"><%= hda.peek %></pre>',"<% } %>","</div>","<% } %>","<% } %>","</div>"].join(""));b.templates={skeleton:function(h){return a({_l:c,hda:h})},body:function(h){return e({_l:c,hda:h})}};return{HDABaseView:b}}); \ No newline at end of file diff -r 65ec063664eb0ce100d76d985fba93f200ac5178 -r cef33a0617405e7b3f25c79955890c72e69dc14b static/scripts/packed/mvc/dataset/hda-edit.js --- a/static/scripts/packed/mvc/dataset/hda-edit.js +++ b/static/scripts/packed/mvc/dataset/hda-edit.js @@ -1,1 +1,1 @@ -define(["mvc/dataset/hda-model","mvc/dataset/hda-base","mvc/tags","mvc/annotations","utils/localization"],function(g,b,a,e,f){var h=b.HDABaseView.extend({initialize:function(i){b.HDABaseView.prototype.initialize.call(this,i);this.hasUser=i.hasUser;this.defaultPrimaryActionButtonRenderers=[this._render_showParamsButton,this._render_rerunButton];this.purgeAllowed=i.purgeAllowed||false;this.tagsEditorShown=i.tagsEditorShown||false;this.annotationEditorShown=i.annotationEditorShown||false},_render_titleButtons:function(){return b.HDABaseView.prototype._render_titleButtons.call(this).concat([this._render_editButton(),this._render_deleteButton()])},_render_editButton:function(){if((this.model.get("state")===g.HistoryDatasetAssociation.STATES.DISCARDED)||(this.model.get("state")===g.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(!this.model.get("accessible"))){return null}var k=this.model.get("purged"),i=this.model.get("deleted"),j={title:f("Edit attributes"),href:this.urls.edit,target:this.linkTarget,classes:"dataset-edit"};if(i||k){j.disabled=true;if(k){j.title=f("Cannot edit attributes of datasets removed from disk")}else{if(i){j.title=f("Undelete dataset to edit attributes")}}}else{if(this.model.get("state")===g.HistoryDatasetAssociation.STATES.UPLOAD){j.disabled=true;j.title=f("This dataset must finish uploading before it can be edited")}else{if(this.model.get("state")===g.HistoryDatasetAssociation.STATES.NEW){j.disabled=true;j.title=f("This dataset is not yet editable")}}}j.faIcon="fa-pencil";return faIconButton(j)},_render_deleteButton:function(){if((this.model.get("state")===g.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(!this.model.get("accessible"))){return null}var i=this,j={title:f("Delete"),classes:"dataset-delete",onclick:function(){i.$el.find(".icon-btn.dataset-delete").trigger("mouseout");i.model["delete"]()}};if(this.model.get("deleted")||this.model.get("purged")){j={title:f("Dataset is already deleted"),disabled:true}}j.faIcon="fa-times";return faIconButton(j)},_render_errButton:function(){if(this.model.get("state")!==g.HistoryDatasetAssociation.STATES.ERROR){return null}return faIconButton({title:f("View or report this error"),href:this.urls.report_error,classes:"dataset-report-error-btn",target:this.linkTarget,faIcon:"fa-bug"})},_render_rerunButton:function(){return faIconButton({title:f("Run this job again"),href:this.urls.rerun,classes:"dataset-rerun-btn",target:this.linkTarget,faIcon:"fa-refresh"})},_render_visualizationsButton:function(){var i=this.model.get("visualizations");if((!this.hasUser)||(!this.model.hasData())||(_.isEmpty(i))){return null}if(_.isObject(i[0])){return this._render_visualizationsFrameworkButton(i)}if(!this.urls.visualization){return null}var k=this.model.get("dbkey"),o=this.urls.visualization,l={},p={dataset_id:this.model.get("id"),hda_ldda:"hda"};if(k){p.dbkey=k}var j=faIconButton({title:f("Visualize"),classes:"dataset-visualize-btn",faIcon:"fa-bar-chart-o"});function m(q){if(q==="trackster"){return c(o,p,k)}return function(){Galaxy.frame.add({title:"Visualization",type:"url",content:o+"/"+q+"?"+$.param(p)})}}function n(q){return q.charAt(0).toUpperCase()+q.slice(1)}if(i.length===1){j.attr("data-original-title",f("Visualize in")+" "+f(n(i[0])));j.click(m(i[0]))}else{_.each(i,function(q){l[f(n(q))]=m(q)});make_popupmenu(j,l)}return j},_render_visualizationsFrameworkButton:function(i){if(!(this.model.hasData())||!(i&&!_.isEmpty(i))){return null}var k=faIconButton({title:f("Visualize"),classes:"dataset-visualize-btn",faIcon:"fa-bar-chart-o"});if(i.length===1){var j=i[0];k.attr("data-original-title",f("Visualize in")+" "+j.html);k.attr("href",j.href)}else{var l=[];_.each(i,function(m){m.func=function(n){if(Galaxy.frame&&Galaxy.frame.active){Galaxy.frame.add({title:"Visualization",type:"url",content:m.href});n.preventDefault();return false}return true};l.push(m);return false});PopupMenu.create(k,l)}return k},_buildNewRender:function(){var i=b.HDABaseView.prototype._buildNewRender.call(this);var j="<br />",l=".",k=function(m,n){return['<a href="javascript:void(0)" class="',n,'">',m,"</a>"].join("")};i.find(".dataset-deleted-msg").append([j,k(f("Undelete it"),"dataset-undelete"),l].join(""));if(this.purgeAllowed){i.find(".dataset-deleted-msg").append([j,k(f("Permanently remove it from disk"),"dataset-purge"),l].join(""))}i.find(".dataset-hidden-msg").append([j,k(f("Unhide it"),"dataset-unhide"),l].join(""));return i},_render_body_failed_metadata:function(){var j=$("<a/>").attr({href:this.urls.edit,target:this.linkTarget}).text(f("set it manually or retry auto-detection")),i=$("<span/>").text(". "+f("You may be able to")+" ").append(j),k=b.HDABaseView.prototype._render_body_failed_metadata.call(this);k.find(".warningmessagesmall strong").append(i);return k},_render_body_error:function(){var i=b.HDABaseView.prototype._render_body_error.call(this);i.find(".dataset-actions .left").prepend(this._render_errButton());return i},_render_body_ok:function(){var i=b.HDABaseView.prototype._render_body_ok.call(this);if(this.model.isDeletedOrPurged()){return i}this.makeDbkeyEditLink(i);if(this.hasUser){i.find(".dataset-actions .left").append(this._render_visualizationsButton());this._renderTags(i);this._renderAnnotation(i)}return i},_renderTags:function(i){var j=this;this.tagsEditor=new a.TagsEditor({model:this.model,el:i.find(".tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){j.tagsEditorShown=true},onhide:function(){j.tagsEditorShown=false},$activator:faIconButton({title:f("Edit dataset tags"),classes:"dataset-tag-btn",faIcon:"fa-tags"}).appendTo(i.find(".dataset-actions .right"))});if(this.tagsEditorShown){this.tagsEditor.toggle(true)}},_renderAnnotation:function(i){var j=this;this.annotationEditor=new e.AnnotationEditor({model:this.model,el:i.find(".annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){j.annotationEditorShown=true},onhide:function(){j.annotationEditorShown=false},$activator:faIconButton({title:f("Edit dataset annotation"),classes:"dataset-annotate-btn",faIcon:"fa-comment"}).appendTo(i.find(".dataset-actions .right"))});if(this.annotationEditorShown){this.annotationEditor.toggle(true)}},makeDbkeyEditLink:function(j){if(this.model.get("metadata_dbkey")==="?"&&!this.model.isDeletedOrPurged()){var i=$('<a class="value">?</a>').attr("href",this.urls.edit).attr("target",this.linkTarget);j.find(".dataset-dbkey .value").replaceWith(i)}},events:_.extend(_.clone(b.HDABaseView.prototype.events),{"click .dataset-undelete":function(i){this.model.undelete();return false},"click .dataset-unhide":function(i){this.model.unhide();return false},"click .dataset-purge":"confirmPurge"}),confirmPurge:function d(i){this.model.purge();return false},toString:function(){var i=(this.model)?(this.model+""):("(no model)");return"HDAView("+i+")"}});function c(i,k,j){return function(){var l={};if(j){l["f-dbkey"]=j}$.ajax({url:i+"/list_tracks?"+$.param(l),dataType:"html",error:function(){alert(("Could not add this dataset to browser")+".")},success:function(m){var n=window.parent;n.Galaxy.modal.show({title:"View Data in a New or Saved Visualization",buttons:{Cancel:function(){n.Galaxy.modal.hide()},"View in saved visualization":function(){n.Galaxy.modal.show({title:"Add Data to Saved Visualization",body:m,buttons:{Cancel:function(){n.Galaxy.modal.hide()},"Add to visualization":function(){$(n.document).find("input[name=id]:checked").each(function(){n.Galaxy.modal.hide();var o=$(this).val();k.id=o;n.Galaxy.frame.add({title:"Trackster",type:"url",content:i+"/trackster?"+$.param(k)})})}}})},"View in new visualization":function(){n.Galaxy.modal.hide();var o=i+"/trackster?"+$.param(k);n.Galaxy.frame.add({title:"Trackster",type:"url",content:o})}}})}});return false}}return{HDAEditView:h}}); \ No newline at end of file +define(["mvc/dataset/hda-model","mvc/dataset/hda-base","mvc/tags","mvc/annotations","utils/localization"],function(g,b,a,e,f){var h=b.HDABaseView.extend({initialize:function(i){b.HDABaseView.prototype.initialize.call(this,i);this.hasUser=i.hasUser;this.defaultPrimaryActionButtonRenderers=[this._render_showParamsButton,this._render_rerunButton];this.purgeAllowed=i.purgeAllowed||false;this.tagsEditorShown=i.tagsEditorShown||false;this.annotationEditorShown=i.annotationEditorShown||false},_render_titleButtons:function(){return b.HDABaseView.prototype._render_titleButtons.call(this).concat([this._render_editButton(),this._render_deleteButton()])},_render_editButton:function(){if((this.model.get("state")===g.HistoryDatasetAssociation.STATES.DISCARDED)||(this.model.get("state")===g.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(!this.model.get("accessible"))){return null}var k=this.model.get("purged"),i=this.model.get("deleted"),j={title:f("Edit attributes"),href:this.urls.edit,target:this.linkTarget,classes:"dataset-edit"};if(i||k){j.disabled=true;if(k){j.title=f("Cannot edit attributes of datasets removed from disk")}else{if(i){j.title=f("Undelete dataset to edit attributes")}}}else{if(this.model.get("state")===g.HistoryDatasetAssociation.STATES.UPLOAD){j.disabled=true;j.title=f("This dataset must finish uploading before it can be edited")}else{if(this.model.get("state")===g.HistoryDatasetAssociation.STATES.NEW){j.disabled=true;j.title=f("This dataset is not yet editable")}}}j.faIcon="fa-pencil";return faIconButton(j)},_render_deleteButton:function(){if((this.model.get("state")===g.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(!this.model.get("accessible"))){return null}var i=this,j={title:f("Delete"),classes:"dataset-delete",onclick:function(){i.$el.find(".icon-btn.dataset-delete").trigger("mouseout");i.model["delete"]()}};if(this.model.get("deleted")||this.model.get("purged")){j={title:f("Dataset is already deleted"),disabled:true}}j.faIcon="fa-times";return faIconButton(j)},_render_errButton:function(){if(this.model.get("state")!==g.HistoryDatasetAssociation.STATES.ERROR){return null}return faIconButton({title:f("View or report this error"),href:this.urls.report_error,classes:"dataset-report-error-btn",target:this.linkTarget,faIcon:"fa-bug"})},_render_rerunButton:function(){return faIconButton({title:f("Run this job again"),href:this.urls.rerun,classes:"dataset-rerun-btn",target:this.linkTarget,faIcon:"fa-refresh"})},_render_visualizationsButton:function(){var i=this.model.get("visualizations");if((!this.hasUser)||(!this.model.hasData())||(_.isEmpty(i))){return null}if(_.isObject(i[0])){return this._render_visualizationsFrameworkButton(i)}if(!this.urls.visualization){return null}var k=this.model.get("dbkey"),o=this.urls.visualization,l={},p={dataset_id:this.model.get("id"),hda_ldda:"hda"};if(k){p.dbkey=k}var j=faIconButton({title:f("Visualize"),classes:"dataset-visualize-btn",faIcon:"fa-bar-chart-o"});function m(q){if(q==="trackster"){return c(o,p,k)}return function(){Galaxy.frame.add({title:"Visualization",type:"url",content:o+"/"+q+"?"+$.param(p)})}}function n(q){return q.charAt(0).toUpperCase()+q.slice(1)}if(i.length===1){j.attr("data-original-title",f("Visualize in")+" "+f(n(i[0])));j.click(m(i[0]))}else{_.each(i,function(q){l[f(n(q))]=m(q)});make_popupmenu(j,l)}return j},_render_visualizationsFrameworkButton:function(i){if(!(this.model.hasData())||!(i&&!_.isEmpty(i))){return null}var k=faIconButton({title:f("Visualize"),classes:"dataset-visualize-btn",faIcon:"fa-bar-chart-o"});if(i.length===1){var j=i[0];k.attr("data-original-title",f("Visualize in")+" "+j.html);k.attr("href",j.href)}else{var l=[];_.each(i,function(m){m.func=function(n){if(Galaxy.frame&&Galaxy.frame.active){Galaxy.frame.add({title:"Visualization",type:"url",content:m.href});n.preventDefault();return false}return true};l.push(m);return false});PopupMenu.create(k,l)}return k},_buildNewRender:function(){var i=b.HDABaseView.prototype._buildNewRender.call(this);var j="<br />",l=".",k=function(m,n){return['<a href="javascript:void(0)" class="',n,'">',m,"</a>"].join("")};i.find(".dataset-deleted-msg").append([j,k(f("Undelete it"),"dataset-undelete"),l].join(""));if(this.purgeAllowed){i.find(".dataset-deleted-msg").append([j,k(f("Permanently remove it from disk"),"dataset-purge"),l].join(""))}i.find(".dataset-hidden-msg").append([j,k(f("Unhide it"),"dataset-unhide"),l].join(""));return i},_render_body_failed_metadata:function(){var j=$("<a/>").attr({href:this.urls.edit,target:this.linkTarget}).text(f("set it manually or retry auto-detection")),i=$("<span/>").text(". "+f("You may be able to")+" ").append(j),k=b.HDABaseView.prototype._render_body_failed_metadata.call(this);k.find(".warningmessagesmall strong").append(i);return k},_render_body_error:function(){var i=b.HDABaseView.prototype._render_body_error.call(this);i.find(".dataset-actions .left").prepend(this._render_errButton());return i},_render_body_ok:function(){var i=b.HDABaseView.prototype._render_body_ok.call(this);if(this.model.isDeletedOrPurged()){return i}this.makeDbkeyEditLink(i);if(this.hasUser){i.find(".dataset-actions .left").append(this._render_visualizationsButton());this._renderTags(i);this._renderAnnotation(i)}return i},_renderTags:function(i){var j=this;this.tagsEditor=new a.TagsEditor({model:this.model,el:i.find(".tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){j.tagsEditorShown=true},onhide:function(){j.tagsEditorShown=false},$activator:faIconButton({title:f("Edit dataset tags"),classes:"dataset-tag-btn",faIcon:"fa-tags"}).appendTo(i.find(".dataset-actions .right"))});if(this.tagsEditorShown){this.tagsEditor.toggle(true)}},_renderAnnotation:function(i){var j=this;this.annotationEditor=new e.AnnotationEditor({model:this.model,el:i.find(".annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){j.annotationEditorShown=true},onhide:function(){j.annotationEditorShown=false},$activator:faIconButton({title:f("Edit dataset annotation"),classes:"dataset-annotate-btn",faIcon:"fa-comment"}).appendTo(i.find(".dataset-actions .right"))});if(this.annotationEditorShown){this.annotationEditor.toggle(true)}},makeDbkeyEditLink:function(j){if(this.model.get("metadata_dbkey")==="?"&&!this.model.isDeletedOrPurged()){var i=$('<a class="value">?</a>').attr("href",this.urls.edit).attr("target",this.linkTarget);j.find(".dataset-dbkey .value").replaceWith(i)}},events:_.extend(_.clone(b.HDABaseView.prototype.events),{"click .dataset-undelete":function(i){this.model.undelete();return false},"click .dataset-unhide":function(i){this.model.unhide();return false},"click .dataset-purge":"confirmPurge"}),confirmPurge:function d(i){this.model.purge();return false},toString:function(){var i=(this.model)?(this.model+""):("(no model)");return"HDAEditView("+i+")"}});function c(i,k,j){return function(){var l={};if(j){l["f-dbkey"]=j}$.ajax({url:i+"/list_tracks?"+$.param(l),dataType:"html",error:function(){alert(("Could not add this dataset to browser")+".")},success:function(m){var n=window.parent;n.Galaxy.modal.show({title:"View Data in a New or Saved Visualization",buttons:{Cancel:function(){n.Galaxy.modal.hide()},"View in saved visualization":function(){n.Galaxy.modal.show({title:"Add Data to Saved Visualization",body:m,buttons:{Cancel:function(){n.Galaxy.modal.hide()},"Add to visualization":function(){$(n.document).find("input[name=id]:checked").each(function(){n.Galaxy.modal.hide();var o=$(this).val();k.id=o;n.Galaxy.frame.add({title:"Trackster",type:"url",content:i+"/trackster?"+$.param(k)})})}}})},"View in new visualization":function(){n.Galaxy.modal.hide();var o=i+"/trackster?"+$.param(k);n.Galaxy.frame.add({title:"Trackster",type:"url",content:o})}}})}});return false}}return{HDAEditView:h}}); \ No newline at end of file diff -r 65ec063664eb0ce100d76d985fba93f200ac5178 -r cef33a0617405e7b3f25c79955890c72e69dc14b static/scripts/packed/mvc/history/history-content-base-view.js --- /dev/null +++ b/static/scripts/packed/mvc/history/history-content-base-view.js @@ -0,0 +1,1 @@ +define(["mvc/base-mvc","utils/localization"],function(a,b){var c=Backbone.View.extend(a.LoggableMixin).extend({});return{HistoryContentBaseView:c}}); \ No newline at end of file diff -r 65ec063664eb0ce100d76d985fba93f200ac5178 -r cef33a0617405e7b3f25c79955890c72e69dc14b static/scripts/packed/mvc/history/history-contents.js --- a/static/scripts/packed/mvc/history/history-contents.js +++ b/static/scripts/packed/mvc/history/history-contents.js @@ -1,1 +1,1 @@ -define(["mvc/history/history-content-base","mvc/dataset/hda-model","mvc/collection/hdca-model","mvc/base-mvc","utils/localization"],function(b,d,f,a,c){var g=Backbone.Collection.extend(a.LoggableMixin).extend({model:function(i,h){console.debug("HistoryContents.model:",i);if(i.history_content_type==="dataset"){return new d.HistoryDatasetAssociation(i,h)}else{if(i.history_content_type==="dataset_collection"){return new f.HistoryDatasetCollectionAssociation(i,h)}}throw new TypeError("Unknown history_content_type:"+i.history_content_type)},initialize:function(i,h){h=h||{};console.debug("new HistoryContents",i,h);this.historyId=h.historyId},urlRoot:galaxy_config.root+"api/histories",url:function(){return this.urlRoot+"/"+this.historyId+"/contents"},ids:function(){return this.map(function(h){return h.get("id")})},notReady:function(){return this.filter(function(h){return !h.inReadyState()})},running:function(){var h=[];this.each(function(i){if(!i.inReadyState()){h.push(i.get("id"))}});return h},getByHid:function(h){return _.first(this.filter(function(i){return i.get("hid")===h}))},getVisible:function(h,k,j){j=j||[];var i=new g(this.filter(function(l){return l.isVisible(h,k)}));_.each(j,function(l){if(!_.isFunction(l)){return}i=new g(i.filter(l))});return i},haveDetails:function(){return this.all(function(h){return h.hasDetails()})},fetchAllDetails:function(i){i=i||{};var h={details:"all"};i.data=(i.data)?(_.extend(i.data,h)):(h);return this.fetch(i)},ajaxQueue:function(k,j){var i=jQuery.Deferred(),h=this.length,m=[];if(!h){i.resolve([]);return i}var l=this.chain().reverse().map(function(o,n){return function(){var p=k.call(o,j);p.done(function(q){i.notify({curr:n,total:h,response:q,model:o})});p.always(function(q){m.push(q);if(l.length){l.shift()()}else{i.resolve(m)}})}}).value();l.shift()();return i},matches:function(h){return this.filter(function(i){return i.matches(h)})},set:function(j,h){var i=this;j=_.map(j,function(m){var l=m.attributes||m;var n=b.HistoryContent.typeIdStr(l.history_content_type,l.id);var o=i.get(n);if(!o){return m}var k=o.toJSON();_.extend(k,m);return k});Backbone.Collection.prototype.set.call(this,j,h)},promoteToHistoryDatasetCollection:function e(m,k,i){i=i||{};i.url=this.url();i.type="POST";var o=k;var l=[],h=null;if(k==="list"){this.chain().each(function(r){var p=r.attributes.name;var s=r.get("id");var q=r.attributes.history_content_type;if(q==="dataset"){if(o!=="list"){console.log("Invalid collection type")}l.push({name:p,src:"hda",id:s})}else{if(o==="list"){o="list:"+r.attributes.collection_type}else{if(o!=="list:"+r.attributes.collection_type){console.log("Invalid collection type")}}l.push({name:p,src:"hdca",id:s})}});h="New Dataset List"}else{if(k==="paired"){var j=this.ids();if(j.length!==2){}l.push({name:"forward",src:"hda",id:j[0]});l.push({name:"reverse",src:"hda",id:j[1]});h="New Dataset Pair"}}i.data={type:"dataset_collection",name:h,collection_type:o,element_identifiers:JSON.stringify(l)};var n=jQuery.ajax(i);n.done(function(r,p,q){m.refresh()});n.fail(function(r,p,q){if(r.responseJSON&&r.responseJSON.error){error=r.responseJSON.error}else{error=r.responseJSON}r.responseText=error});return n},toString:function(){return(["HistoryContents(",[this.parentId,this.length].join(),")"].join(""))}});return{HistoryContents:g}}); \ No newline at end of file +define(["mvc/history/history-content-base","mvc/dataset/hda-model","mvc/collection/hdca-model","mvc/base-mvc","utils/localization"],function(b,d,f,a,c){var g=Backbone.Collection.extend(a.LoggableMixin).extend({model:function(i,h){if(i.history_content_type==="dataset"){return new d.HistoryDatasetAssociation(i,h)}else{if(i.history_content_type==="dataset_collection"){return new f.HistoryDatasetCollectionAssociation(i,h)}}throw new TypeError("Unknown history_content_type:"+i.history_content_type)},initialize:function(i,h){h=h||{};this.historyId=h.historyId},urlRoot:galaxy_config.root+"api/histories",url:function(){return this.urlRoot+"/"+this.historyId+"/contents"},ids:function(){return this.map(function(h){return h.get("id")})},notReady:function(){return this.filter(function(h){return !h.inReadyState()})},running:function(){var h=[];this.each(function(i){if(!i.inReadyState()){h.push(i.get("id"))}});return h},getByHid:function(h){return _.first(this.filter(function(i){return i.get("hid")===h}))},getVisible:function(h,k,j){j=j||[];var i=new g(this.filter(function(l){return l.isVisible(h,k)}));_.each(j,function(l){if(!_.isFunction(l)){return}i=new g(i.filter(l))});return i},haveDetails:function(){return this.all(function(h){return h.hasDetails()})},fetchAllDetails:function(i){i=i||{};var h={details:"all"};i.data=(i.data)?(_.extend(i.data,h)):(h);return this.fetch(i)},ajaxQueue:function(k,j){var i=jQuery.Deferred(),h=this.length,m=[];if(!h){i.resolve([]);return i}var l=this.chain().reverse().map(function(o,n){return function(){var p=k.call(o,j);p.done(function(q){i.notify({curr:n,total:h,response:q,model:o})});p.always(function(q){m.push(q);if(l.length){l.shift()()}else{i.resolve(m)}})}}).value();l.shift()();return i},matches:function(h){return this.filter(function(i){return i.matches(h)})},set:function(j,h){var i=this;j=_.map(j,function(m){var l=m.attributes||m;var n=b.HistoryContent.typeIdStr(l.history_content_type,l.id);var o=i.get(n);if(!o){return m}var k=o.toJSON();_.extend(k,m);return k});Backbone.Collection.prototype.set.call(this,j,h)},promoteToHistoryDatasetCollection:function e(m,k,i){i=i||{};i.url=this.url();i.type="POST";var o=k;var l=[],h=null;if(k==="list"){this.chain().each(function(r){var p=r.attributes.name;var s=r.get("id");var q=r.attributes.history_content_type;if(q==="dataset"){if(o!=="list"){console.log("Invalid collection type")}l.push({name:p,src:"hda",id:s})}else{if(o==="list"){o="list:"+r.attributes.collection_type}else{if(o!=="list:"+r.attributes.collection_type){console.log("Invalid collection type")}}l.push({name:p,src:"hdca",id:s})}});h="New Dataset List"}else{if(k==="paired"){var j=this.ids();if(j.length!==2){}l.push({name:"forward",src:"hda",id:j[0]});l.push({name:"reverse",src:"hda",id:j[1]});h="New Dataset Pair"}}i.data={type:"dataset_collection",name:h,collection_type:o,element_identifiers:JSON.stringify(l)};var n=jQuery.ajax(i);n.done(function(r,p,q){m.refresh()});n.fail(function(r,p,q){if(r.responseJSON&&r.responseJSON.error){error=r.responseJSON.error}else{error=r.responseJSON}r.responseText=error});return n},toString:function(){return(["HistoryContents(",[this.parentId,this.length].join(),")"].join(""))}});return{HistoryContents:g}}); \ No newline at end of file diff -r 65ec063664eb0ce100d76d985fba93f200ac5178 -r cef33a0617405e7b3f25c79955890c72e69dc14b static/scripts/packed/mvc/ui/ui-frames.js --- a/static/scripts/packed/mvc/ui/ui-frames.js +++ b/static/scripts/packed/mvc/ui/ui-frames.js @@ -1,1 +1,1 @@ -define([],function(){var a=Backbone.View.extend({options:{frame:{cols:6,rows:3},rows:1000,cell:130,margin:5,scroll:5,top_min:40,frame_max:9,visible:true,onchange:null},cols:0,top:0,top_max:0,frame_z:0,frame_counter:0,frame_counter_id:0,frame_list:[],frame_shadow:null,visible:null,initialize:function(c){var b=this;if(c){this.options=_.defaults(c,this.options)}this.visible=this.options.visible;this.top=this.top_max=this.options.top_min;this.setElement(this._template());$(this.el).append(this._template_background());$(this.el).append(this._template_menu());$(this.el_main).append($(this.el));var d="#frame-shadow";$(this.el).append(this._template_shadow(d.substring(1)));this.frame_shadow={id:d,screen_location:{},grid_location:{},grid_rank:null,grid_lock:false};this._frame_resize(this.frame_shadow,{width:0,height:0});this.frame_list[d]=this.frame_shadow;this._panel_refresh();if(!this.visible){this.hide()}else{this.show()}var b=this;$(window).resize(function(){if(b.visible){b._panel_refresh()}})},add:function(c){var f={title:"",content:null,target:"",type:null};if(c){c=_.defaults(c,f)}else{c=f}if(!c.content){return}if(this.frame_counter>=this.options.frame_max){alert("You have reached the maximum number of allowed frames ("+this.options.frame_max+").");return}var d="#frame-"+(this.frame_counter_id++);if($(d).length!==0){alert("This frame already exists. This page might contain multiple frame managers.");return}this.top=this.options.top_min;var e=null;if(c.type==="url"){e=$(this._template_frame_url(d.substring(1),c.title,c.content))}else{if(c.type==="other"){e=$(this._template_frame(d.substring(1),c.title));var b=e.find(".f-content");console.log(b);if(_.isFunction(c.content)){c.content(b)}else{b.append(c.content)}}}$(this.el).append(e);var g={id:d,screen_location:{},grid_location:{},grid_rank:null,grid_lock:false};c.width=this._to_pixel_coord("width",this.options.frame.cols);c.height=this._to_pixel_coord("height",this.options.frame.rows);this.frame_z=parseInt($(g.id).css("z-index"));this.frame_list[d]=g;this.frame_counter++;this._frame_resize(g,{width:c.width,height:c.height});this._frame_insert(g,{top:0,left:0},true);if(!this.visible){this.show()}},show:function(){this.visible=true;this.$el.find(".frame").fadeIn("fast");this.$el.find(this.frame_shadow.id).hide();this.$el.find(".frame-background").show();this._panel_refresh();this._menu_refresh()},hide:function(){if(this.event.type!==null){return}this.visible=false;this.$el.find(".frame").fadeOut("fast");this.$el.find(".frame-background").hide();this.$el.find(".frame-menu").hide();this._menu_refresh()},length:function(){return this.frame_counter},setOnChange:function(b){this.options.onchange=b},event:{type:null,target:null,xy:null},events:{mousemove:"_event_frame_mouse_move",mouseup:"_event_frame_mouse_up",mouseleave:"_event_frame_mouse_up",mousewheel:"_event_panel_scroll",DOMMouseScroll:"_event_panel_scroll","mousedown .frame":"_event_frame_mouse_down","mousedown .frame-background":"_event_hide","mousedown .frame-scroll-up":"_event_panel_scroll_up","mousedown .frame-scroll-down":"_event_panel_scroll_down","mousedown .f-close":"_event_frame_close","mousedown .f-pin":"_event_frame_lock"},_event_frame_mouse_down:function(b){if(this.event.type!==null){return}if($(b.target).hasClass("f-header")||$(b.target).hasClass("f-title")){this.event.type="drag"}if($(b.target).hasClass("f-resize")){this.event.type="resize"}if(this.event.type===null){return}b.preventDefault();this.event.target=this._frame_identify(b.target);if(this.event.target.grid_lock){this.event.type=null;return}this.event.xy={x:b.originalEvent.pageX,y:b.originalEvent.pageY};this._frame_drag_start(this.event.target)},_event_frame_mouse_move:function(h){if(this.event.type!="drag"&&this.event.type!="resize"){return}var f={x:h.originalEvent.pageX,y:h.originalEvent.pageY};var c={x:f.x-this.event.xy.x,y:f.y-this.event.xy.y};this.event.xy=f;var g=this._frame_screen(this.event.target);if(this.event.type=="resize"){g.width+=c.x;g.height+=c.y;var d=this.options.cell-this.options.margin-1;g.width=Math.max(g.width,d);g.height=Math.max(g.height,d);this._frame_resize(this.event.target,g);g.width=this._to_grid_coord("width",g.width)+1;g.height=this._to_grid_coord("height",g.height)+1;g.width=this._to_pixel_coord("width",g.width);g.height=this._to_pixel_coord("height",g.height);this._frame_resize(this.frame_shadow,g);this._frame_insert(this.frame_shadow,{top:this._to_grid_coord("top",g.top),left:this._to_grid_coord("left",g.left)})}if(this.event.type=="drag"){g.left+=c.x;g.top+=c.y;this._frame_offset(this.event.target,g);var b={top:this._to_grid_coord("top",g.top),left:this._to_grid_coord("left",g.left)};if(b.left!==0){b.left++}this._frame_insert(this.frame_shadow,b)}},_event_frame_mouse_up:function(b){if(this.event.type!="drag"&&this.event.type!="resize"){return}this._frame_drag_stop(this.event.target);this.event.type=null},_event_frame_close:function(c){if(this.event.type!==null){return}c.preventDefault();var d=this._frame_identify(c.target);var b=this;$(d.id).fadeOut("fast",function(){$(d.id).remove();delete b.frame_list[d.id];b.frame_counter--;b._panel_refresh(true);b._panel_animation_complete();if(b.visible&&b.frame_counter==0){b.hide()}})},_event_frame_lock:function(b){if(this.event.type!==null){return}b.preventDefault();var c=this._frame_identify(b.target);if(c.grid_lock){c.grid_lock=false;$(c.id).find(".f-pin").removeClass("toggle");$(c.id).find(".f-header").removeClass("f-not-allowed");$(c.id).find(".f-title").removeClass("f-not-allowed");$(c.id).find(".f-resize").show();$(c.id).find(".f-close").show()}else{c.grid_lock=true;$(c.id).find(".f-pin").addClass("toggle");$(c.id).find(".f-header").addClass("f-not-allowed");$(c.id).find(".f-title").addClass("f-not-allowed");$(c.id).find(".f-resize").hide();$(c.id).find(".f-close").hide()}},_event_hide:function(b){if(this.event.type!==null){return}this.hide()},_event_panel_scroll:function(b){if(this.event.type!==null||!this.visible){return}var c=$(b.srcElement).parents(".frame");if(c.length!==0){b.stopPropagation();return}b.preventDefault();var d=b.originalEvent.detail?b.originalEvent.detail:b.originalEvent.wheelDelta/-3;this._panel_scroll(d)},_event_panel_scroll_up:function(b){if(this.event.type!==null){return}b.preventDefault();this._panel_scroll(-this.options.scroll)},_event_panel_scroll_down:function(b){if(this.event.type!==null){return}b.preventDefault();this._panel_scroll(this.options.scroll)},_frame_identify:function(b){return this.frame_list["#"+$(b).closest(".frame").attr("id")]},_frame_drag_start:function(c){this._frame_focus(c,true);var b=this._frame_screen(c);this._frame_resize(this.frame_shadow,b);this._frame_grid(this.frame_shadow,c.grid_location);c.grid_location=null;$(this.frame_shadow.id).show();$(".f-cover").show()},_frame_drag_stop:function(c){this._frame_focus(c,false);var b=this._frame_screen(this.frame_shadow);this._frame_resize(c,b);this._frame_grid(c,this.frame_shadow.grid_location,true);this.frame_shadow.grid_location=null;$(this.frame_shadow.id).hide();$(".f-cover").hide();this._panel_animation_complete()},_to_grid_coord:function(d,c){var b=(d=="width"||d=="height")?1:-1;if(d=="top"){c-=this.top}return parseInt((c+b*this.options.margin)/this.options.cell,10)},_to_pixel_coord:function(d,e){var b=(d=="width"||d=="height")?1:-1;var c=(e*this.options.cell)-b*this.options.margin;if(d=="top"){c+=this.top}return c},_to_grid:function(b){return{top:this._to_grid_coord("top",b.top),left:this._to_grid_coord("left",b.left),width:this._to_grid_coord("width",b.width),height:this._to_grid_coord("height",b.height)}},_to_pixel:function(b){return{top:this._to_pixel_coord("top",b.top),left:this._to_pixel_coord("left",b.left),width:this._to_pixel_coord("width",b.width),height:this._to_pixel_coord("height",b.height)}},_is_collision:function(d){function b(g,f){return !(g.left>f.left+f.width-1||g.left+g.width-1<f.left||g.top>f.top+f.height-1||g.top+g.height-1<f.top)}for(var c in this.frame_list){var e=this.frame_list[c];if(e.grid_location===null){continue}if(b(d,e.grid_location)){return true}}return false},_location_rank:function(b){return(b.top*this.cols)+b.left},_menu_refresh:function(){if(this.visible){if(this.top==this.options.top_min){$(".frame-scroll-up").hide()}else{$(".frame-scroll-up").show()}if(this.top==this.top_max){$(".frame-scroll-down").hide()}else{$(".frame-scroll-down").show()}}if(this.options.onchange){this.options.onchange()}},_panel_animation_complete:function(){var b=this;$(".frame").promise().done(function(){b._panel_scroll(0,true)})},_panel_refresh:function(b){this.cols=parseInt($(window).width()/this.options.cell,10)+1;this._frame_insert(null,null,b)},_panel_scroll:function(g,b){var d=this.top-this.options.scroll*g;d=Math.max(d,this.top_max);d=Math.min(d,this.options.top_min);if(this.top!=d){for(var c in this.frame_list){var f=this.frame_list[c];if(f.grid_location!==null){var e={top:f.screen_location.top-(this.top-d),left:f.screen_location.left};this._frame_offset(f,e,b)}}this.top=d}this._menu_refresh()},_frame_insert:function(h,b,d){var c=[];if(h){h.grid_location=null;c.push([h,this._location_rank(b)])}var e=null;for(e in this.frame_list){var g=this.frame_list[e];if(g.grid_location!==null&&!g.grid_lock){g.grid_location=null;c.push([g,g.grid_rank])}}c.sort(function(k,f){var m=k[1];var l=f[1];return m<l?-1:(m>l?1:0)});for(e=0;e<c.length;e++){this._frame_place(c[e][0],d)}this.top_max=0;for(var e in this.frame_list){var h=this.frame_list[e];if(h.grid_location!==null){this.top_max=Math.max(this.top_max,h.grid_location.top+h.grid_location.height)}}this.top_max=$(window).height()-this.top_max*this.options.cell-2*this.options.margin;this.top_max=Math.min(this.top_max,this.options.top_min);this._menu_refresh()},_frame_place:function(h,c){h.grid_location=null;var f=this._to_grid(this._frame_screen(h));var b=false;for(var e=0;e<this.options.rows;e++){for(var d=0;d<Math.max(1,this.cols-f.width);d++){f.top=e;f.left=d;if(!this._is_collision(f)){b=true;break}}if(b){break}}if(b){this._frame_grid(h,f,c)}else{console.log("Grid dimensions exceeded.")}},_frame_focus:function(d,b){var c=this.frame_z+(b?1:0);$(d.id).css("z-index",c)},_frame_offset:function(e,d,c){e.screen_location.left=d.left;e.screen_location.top=d.top;if(c){this._frame_focus(e,true);var b=this;$(e.id).animate({top:d.top,left:d.left},"fast",function(){b._frame_focus(e,false)})}else{$(e.id).css({top:d.top,left:d.left})}},_frame_resize:function(c,b){$(c.id).css({width:b.width,height:b.height});c.screen_location.width=b.width;c.screen_location.height=b.height},_frame_grid:function(d,b,c){d.grid_location=b;this._frame_offset(d,this._to_pixel(b),c);d.grid_rank=this._location_rank(b)},_frame_screen:function(c){var b=c.screen_location;return{top:b.top,left:b.left,width:b.width,height:b.height}},_template:function(){return'<div class="galaxy-frame"></div>'},_template_frame:function(c,b){if(!b){b=""}return'<div id="'+c+'" class="frame corner"><div class="f-header corner"><span class="f-title">'+b+'</span><span class="f-icon f-close fa fa-trash-o"></span><span class="f-icon f-pin fa fa-thumb-tack"></span></div><div class="f-content"><div class="f-cover"></div></div><span class="f-resize f-icon corner fa fa-resize-full"></span></div>'},_template_frame_url:function(e,d,b){if(b.indexOf("?")==-1){b+="?"}else{b+="&"}b+="widget=True";var c=$(this._template_frame(e,d));c.find(".f-content").append('<iframe scrolling="auto" class="f-iframe" src="'+b+'"></iframe>');return c},_template_shadow:function(b){return'<div id="'+b+'" class="frame-shadow corner"></div>'},_template_background:function(){return'<div class="frame-background"></div>'},_template_menu:function(){return'<div class="frame-scroll-up frame-menu fa fa-chevron-up fa-2x"></div><div class="frame-scroll-down frame-menu fa fa-chevron-down fa-2x"></div>'}});return{View:a}}); \ No newline at end of file +define([],function(){var a=Backbone.View.extend({options:{frame:{cols:6,rows:3},rows:1000,cell:130,margin:5,scroll:5,top_min:40,frame_max:9,visible:true,onchange:null},cols:0,top:0,top_max:0,frame_z:0,frame_counter:0,frame_counter_id:0,frame_list:[],frame_shadow:null,visible:null,initialize:function(c){var b=this;if(c){this.options=_.defaults(c,this.options)}this.visible=this.options.visible;this.top=this.top_max=this.options.top_min;this.setElement(this._template());$(this.el).append(this._template_background());$(this.el).append(this._template_menu());$(this.el_main).append($(this.el));var d="#frame-shadow";$(this.el).append(this._template_shadow(d.substring(1)));this.frame_shadow={id:d,screen_location:{},grid_location:{},grid_rank:null,grid_lock:false};this._frame_resize(this.frame_shadow,{width:0,height:0});this.frame_list[d]=this.frame_shadow;this._panel_refresh();if(!this.visible){this.hide()}else{this.show()}var b=this;$(window).resize(function(){if(b.visible){b._panel_refresh()}})},add:function(c){var f={title:"",content:null,target:"",type:null};if(c){c=_.defaults(c,f)}else{c=f}if(!c.content){return}if(this.frame_counter>=this.options.frame_max){alert("You have reached the maximum number of allowed frames ("+this.options.frame_max+").");return}var d="#frame-"+(this.frame_counter_id++);if($(d).length!==0){alert("This frame already exists. This page might contain multiple frame managers.");return}this.top=this.options.top_min;var e=null;if(c.type==="url"){e=$(this._template_frame_url(d.substring(1),c.title,c.content))}else{if(c.type==="other"){e=$(this._template_frame(d.substring(1),c.title));var b=e.find(".f-content");if(_.isFunction(c.content)){c.content(b)}else{b.append(c.content)}}}$(this.el).append(e);var g={id:d,screen_location:{},grid_location:{},grid_rank:null,grid_lock:false};c.width=this._to_pixel_coord("width",this.options.frame.cols);c.height=this._to_pixel_coord("height",this.options.frame.rows);this.frame_z=parseInt($(g.id).css("z-index"));this.frame_list[d]=g;this.frame_counter++;this._frame_resize(g,{width:c.width,height:c.height});this._frame_insert(g,{top:0,left:0},true);if(!this.visible){this.show()}},show:function(){this.visible=true;this.$el.find(".frame").fadeIn("fast");this.$el.find(this.frame_shadow.id).hide();this.$el.find(".frame-background").show();this._panel_refresh();this._menu_refresh()},hide:function(){if(this.event.type!==null){return}this.visible=false;this.$el.find(".frame").fadeOut("fast");this.$el.find(".frame-background").hide();this.$el.find(".frame-menu").hide();this._menu_refresh()},length:function(){return this.frame_counter},setOnChange:function(b){this.options.onchange=b},event:{type:null,target:null,xy:null},events:{mousemove:"_event_frame_mouse_move",mouseup:"_event_frame_mouse_up",mouseleave:"_event_frame_mouse_up",mousewheel:"_event_panel_scroll",DOMMouseScroll:"_event_panel_scroll","mousedown .frame":"_event_frame_mouse_down","mousedown .frame-background":"_event_hide","mousedown .frame-scroll-up":"_event_panel_scroll_up","mousedown .frame-scroll-down":"_event_panel_scroll_down","mousedown .f-close":"_event_frame_close","mousedown .f-pin":"_event_frame_lock"},_event_frame_mouse_down:function(b){if(this.event.type!==null){return}if($(b.target).hasClass("f-header")||$(b.target).hasClass("f-title")){this.event.type="drag"}if($(b.target).hasClass("f-resize")){this.event.type="resize"}if(this.event.type===null){return}b.preventDefault();this.event.target=this._frame_identify(b.target);if(this.event.target.grid_lock){this.event.type=null;return}this.event.xy={x:b.originalEvent.pageX,y:b.originalEvent.pageY};this._frame_drag_start(this.event.target)},_event_frame_mouse_move:function(h){if(this.event.type!="drag"&&this.event.type!="resize"){return}var f={x:h.originalEvent.pageX,y:h.originalEvent.pageY};var c={x:f.x-this.event.xy.x,y:f.y-this.event.xy.y};this.event.xy=f;var g=this._frame_screen(this.event.target);if(this.event.type=="resize"){g.width+=c.x;g.height+=c.y;var d=this.options.cell-this.options.margin-1;g.width=Math.max(g.width,d);g.height=Math.max(g.height,d);this._frame_resize(this.event.target,g);g.width=this._to_grid_coord("width",g.width)+1;g.height=this._to_grid_coord("height",g.height)+1;g.width=this._to_pixel_coord("width",g.width);g.height=this._to_pixel_coord("height",g.height);this._frame_resize(this.frame_shadow,g);this._frame_insert(this.frame_shadow,{top:this._to_grid_coord("top",g.top),left:this._to_grid_coord("left",g.left)})}if(this.event.type=="drag"){g.left+=c.x;g.top+=c.y;this._frame_offset(this.event.target,g);var b={top:this._to_grid_coord("top",g.top),left:this._to_grid_coord("left",g.left)};if(b.left!==0){b.left++}this._frame_insert(this.frame_shadow,b)}},_event_frame_mouse_up:function(b){if(this.event.type!="drag"&&this.event.type!="resize"){return}this._frame_drag_stop(this.event.target);this.event.type=null},_event_frame_close:function(c){if(this.event.type!==null){return}c.preventDefault();var d=this._frame_identify(c.target);var b=this;$(d.id).fadeOut("fast",function(){$(d.id).remove();delete b.frame_list[d.id];b.frame_counter--;b._panel_refresh(true);b._panel_animation_complete();if(b.visible&&b.frame_counter==0){b.hide()}})},_event_frame_lock:function(b){if(this.event.type!==null){return}b.preventDefault();var c=this._frame_identify(b.target);if(c.grid_lock){c.grid_lock=false;$(c.id).find(".f-pin").removeClass("toggle");$(c.id).find(".f-header").removeClass("f-not-allowed");$(c.id).find(".f-title").removeClass("f-not-allowed");$(c.id).find(".f-resize").show();$(c.id).find(".f-close").show()}else{c.grid_lock=true;$(c.id).find(".f-pin").addClass("toggle");$(c.id).find(".f-header").addClass("f-not-allowed");$(c.id).find(".f-title").addClass("f-not-allowed");$(c.id).find(".f-resize").hide();$(c.id).find(".f-close").hide()}},_event_hide:function(b){if(this.event.type!==null){return}this.hide()},_event_panel_scroll:function(b){if(this.event.type!==null||!this.visible){return}var c=$(b.srcElement).parents(".frame");if(c.length!==0){b.stopPropagation();return}b.preventDefault();var d=b.originalEvent.detail?b.originalEvent.detail:b.originalEvent.wheelDelta/-3;this._panel_scroll(d)},_event_panel_scroll_up:function(b){if(this.event.type!==null){return}b.preventDefault();this._panel_scroll(-this.options.scroll)},_event_panel_scroll_down:function(b){if(this.event.type!==null){return}b.preventDefault();this._panel_scroll(this.options.scroll)},_frame_identify:function(b){return this.frame_list["#"+$(b).closest(".frame").attr("id")]},_frame_drag_start:function(c){this._frame_focus(c,true);var b=this._frame_screen(c);this._frame_resize(this.frame_shadow,b);this._frame_grid(this.frame_shadow,c.grid_location);c.grid_location=null;$(this.frame_shadow.id).show();$(".f-cover").show()},_frame_drag_stop:function(c){this._frame_focus(c,false);var b=this._frame_screen(this.frame_shadow);this._frame_resize(c,b);this._frame_grid(c,this.frame_shadow.grid_location,true);this.frame_shadow.grid_location=null;$(this.frame_shadow.id).hide();$(".f-cover").hide();this._panel_animation_complete()},_to_grid_coord:function(d,c){var b=(d=="width"||d=="height")?1:-1;if(d=="top"){c-=this.top}return parseInt((c+b*this.options.margin)/this.options.cell,10)},_to_pixel_coord:function(d,e){var b=(d=="width"||d=="height")?1:-1;var c=(e*this.options.cell)-b*this.options.margin;if(d=="top"){c+=this.top}return c},_to_grid:function(b){return{top:this._to_grid_coord("top",b.top),left:this._to_grid_coord("left",b.left),width:this._to_grid_coord("width",b.width),height:this._to_grid_coord("height",b.height)}},_to_pixel:function(b){return{top:this._to_pixel_coord("top",b.top),left:this._to_pixel_coord("left",b.left),width:this._to_pixel_coord("width",b.width),height:this._to_pixel_coord("height",b.height)}},_is_collision:function(d){function b(g,f){return !(g.left>f.left+f.width-1||g.left+g.width-1<f.left||g.top>f.top+f.height-1||g.top+g.height-1<f.top)}for(var c in this.frame_list){var e=this.frame_list[c];if(e.grid_location===null){continue}if(b(d,e.grid_location)){return true}}return false},_location_rank:function(b){return(b.top*this.cols)+b.left},_menu_refresh:function(){if(this.visible){if(this.top==this.options.top_min){$(".frame-scroll-up").hide()}else{$(".frame-scroll-up").show()}if(this.top==this.top_max){$(".frame-scroll-down").hide()}else{$(".frame-scroll-down").show()}}if(this.options.onchange){this.options.onchange()}},_panel_animation_complete:function(){var b=this;$(".frame").promise().done(function(){b._panel_scroll(0,true)})},_panel_refresh:function(b){this.cols=parseInt($(window).width()/this.options.cell,10)+1;this._frame_insert(null,null,b)},_panel_scroll:function(g,b){var d=this.top-this.options.scroll*g;d=Math.max(d,this.top_max);d=Math.min(d,this.options.top_min);if(this.top!=d){for(var c in this.frame_list){var f=this.frame_list[c];if(f.grid_location!==null){var e={top:f.screen_location.top-(this.top-d),left:f.screen_location.left};this._frame_offset(f,e,b)}}this.top=d}this._menu_refresh()},_frame_insert:function(h,b,d){var c=[];if(h){h.grid_location=null;c.push([h,this._location_rank(b)])}var e=null;for(e in this.frame_list){var g=this.frame_list[e];if(g.grid_location!==null&&!g.grid_lock){g.grid_location=null;c.push([g,g.grid_rank])}}c.sort(function(k,f){var m=k[1];var l=f[1];return m<l?-1:(m>l?1:0)});for(e=0;e<c.length;e++){this._frame_place(c[e][0],d)}this.top_max=0;for(var e in this.frame_list){var h=this.frame_list[e];if(h.grid_location!==null){this.top_max=Math.max(this.top_max,h.grid_location.top+h.grid_location.height)}}this.top_max=$(window).height()-this.top_max*this.options.cell-2*this.options.margin;this.top_max=Math.min(this.top_max,this.options.top_min);this._menu_refresh()},_frame_place:function(h,c){h.grid_location=null;var f=this._to_grid(this._frame_screen(h));var b=false;for(var e=0;e<this.options.rows;e++){for(var d=0;d<Math.max(1,this.cols-f.width);d++){f.top=e;f.left=d;if(!this._is_collision(f)){b=true;break}}if(b){break}}if(b){this._frame_grid(h,f,c)}else{console.log("Grid dimensions exceeded.")}},_frame_focus:function(d,b){var c=this.frame_z+(b?1:0);$(d.id).css("z-index",c)},_frame_offset:function(e,d,c){e.screen_location.left=d.left;e.screen_location.top=d.top;if(c){this._frame_focus(e,true);var b=this;$(e.id).animate({top:d.top,left:d.left},"fast",function(){b._frame_focus(e,false)})}else{$(e.id).css({top:d.top,left:d.left})}},_frame_resize:function(c,b){$(c.id).css({width:b.width,height:b.height});c.screen_location.width=b.width;c.screen_location.height=b.height},_frame_grid:function(d,b,c){d.grid_location=b;this._frame_offset(d,this._to_pixel(b),c);d.grid_rank=this._location_rank(b)},_frame_screen:function(c){var b=c.screen_location;return{top:b.top,left:b.left,width:b.width,height:b.height}},_template:function(){return'<div class="galaxy-frame"></div>'},_template_frame:function(c,b){if(!b){b=""}return'<div id="'+c+'" class="frame corner"><div class="f-header corner"><span class="f-title">'+b+'</span><span class="f-icon f-close fa fa-trash-o"></span><span class="f-icon f-pin fa fa-thumb-tack"></span></div><div class="f-content"><div class="f-cover"></div></div><span class="f-resize f-icon corner fa fa-resize-full"></span></div>'},_template_frame_url:function(e,d,b){if(b.indexOf("?")==-1){b+="?"}else{b+="&"}b+="widget=True";var c=$(this._template_frame(e,d));c.find(".f-content").append('<iframe scrolling="auto" class="f-iframe" src="'+b+'"></iframe>');return c},_template_shadow:function(b){return'<div id="'+b+'" class="frame-shadow corner"></div>'},_template_background:function(){return'<div class="frame-background"></div>'},_template_menu:function(){return'<div class="frame-scroll-up frame-menu fa fa-chevron-up fa-2x"></div><div class="frame-scroll-down frame-menu fa fa-chevron-down fa-2x"></div>'}});return{View:a}}); \ No newline at end of file Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: carlfeberhard: HDA & History Managers: move serialization logic for bootstrapping into view, display_by_username_and_slug, and root/history into Managers in order to display dataset collections
by commits-noreply＠bitbucket.org 10 Jul '14

10 Jul '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/65ec063664eb/ Changeset: 65ec063664eb User: carlfeberhard Date: 2014-07-10 15:56:17 Summary: HDA & History Managers: move serialization logic for bootstrapping into view, display_by_username_and_slug, and root/history into Managers in order to display dataset collections Affected #: 7 files diff -r 1861cbcc610da6e519c7760e1c829ec3b66887f4 -r 65ec063664eb0ce100d76d985fba93f200ac5178 lib/galaxy/managers/__init__.py --- a/lib/galaxy/managers/__init__.py +++ b/lib/galaxy/managers/__init__.py @@ -1,4 +1,33 @@ -""" 'Business logic' independent of web transactions/user context (trans) -should be pushed into models - but logic that requires the context trans -should be placed under this module. """ +Classes that manage resources (models, tools, etc.) by using the current +Transaction. + +Encapsulates the intersection of trans (or trans.sa_session), models, +and Controllers. + +Responsibilities: + model operations that involve the trans/sa_session (CRUD) + security: + ownership, accessibility + common aspect-oriented operations via new mixins: + sharable, annotatable, tagable, ratable + +Not responsible for: + encoding/decoding ids + any http gobblygook + formatting of returned data (always python structures) + formatting of raised errors + +The goal is to have Controllers only handle: + query-string/payload parsing and encoding/decoding ids + http + return formatting + +and: + control, improve namespacing in Controllers + DRY for Controller ops (define here - use in both UI/API Controllers) + +In other words, 'Business logic' independent of web transactions/user context +(trans) should be pushed into models - but logic that requires the context +trans should be placed under this module. +""" diff -r 1861cbcc610da6e519c7760e1c829ec3b66887f4 -r 65ec063664eb0ce100d76d985fba93f200ac5178 lib/galaxy/managers/base.py --- /dev/null +++ b/lib/galaxy/managers/base.py @@ -0,0 +1,7 @@ + + +class ModelManager( object ): + pass + +class ModelSerializer( object ): + pass diff -r 1861cbcc610da6e519c7760e1c829ec3b66887f4 -r 65ec063664eb0ce100d76d985fba93f200ac5178 lib/galaxy/managers/hdas.py --- a/lib/galaxy/managers/hdas.py +++ b/lib/galaxy/managers/hdas.py @@ -1,16 +1,35 @@ +""" +Manager and Serializer for HDAs. + +HistoryDatasetAssociations (HDAs) are datasets contained or created in a +history. +""" + from galaxy import exceptions -from ..managers import histories +from galaxy.managers import base as manager_base +from galaxy.managers import histories as history_manager -class HDAManager( object ): +import galaxy.web +import galaxy.datatypes.metadata +from galaxy import objectstore + +class HDAManager( manager_base.ModelManager ): + """ + Interface/service object for interacting with HDAs. + """ def __init__( self ): - self.histories_mgr = histories.HistoryManager() + """ + Set up and initialize other managers needed by hdas. + """ + self.histories_mgr = history_manager.HistoryManager() def get( self, trans, unencoded_id, check_ownership=True, check_accessible=True ): """ + Get an HDA by its unencoded db id, checking ownership (via its history) + or accessibility (via dataset shares/permissions). """ - # this is a replacement for UsesHistoryDatasetAssociationMixin because mixins are a bad soln/structure hda = trans.sa_session.query( trans.app.model.HistoryDatasetAssociation ).get( unencoded_id ) if hda is None: raise exceptions.ObjectNotFound() @@ -19,7 +38,8 @@ def secure( self, trans, hda, check_ownership=True, check_accessible=True ): """ - checks if (a) user owns item or (b) item is accessible to user. + check ownership (via its history) or accessibility (via dataset + shares/permissions). """ # all items are accessible to an admin if trans.user and trans.user_is_admin(): @@ -31,12 +51,18 @@ return hda def can_access_dataset( self, trans, hda ): + """ + Use security agent to see if current user has access to dataset. + """ current_user_roles = trans.get_current_user_roles() return trans.app.security_agent.can_access_dataset( current_user_roles, hda.dataset ) #TODO: is_owner, is_accessible def check_ownership( self, trans, hda ): + """ + Use history to see if current user owns HDA. + """ if not trans.user: #if hda.history == trans.history: # return hda @@ -51,6 +77,9 @@ "HistoryDatasetAssociation is not owned by the current user", type='error' ) def check_accessible( self, trans, hda ): + """ + Raise error if HDA is not accessible. + """ if trans.user and trans.user_is_admin(): return hda # check for access of the containing history... @@ -62,6 +91,151 @@ "HistoryDatasetAssociation is not accessible to the current user", type='error' ) def err_if_uploading( self, trans, hda ): + """ + Raise error if HDA is still uploading. + """ if hda.state == trans.model.Dataset.states.UPLOAD: raise exceptions.Conflict( "Please wait until this dataset finishes uploading" ) return hda + + def get_hda_dict( self, trans, hda ): + """ + Return full details of this HDA in dictionary form. + """ + #precondition: the user's access to this hda has already been checked + #TODO:?? postcondition: all ids are encoded (is this really what we want at this level?) + expose_dataset_path = trans.user_is_admin() or trans.app.config.expose_dataset_path + hda_dict = hda.to_dict( view='element', expose_dataset_path=expose_dataset_path ) + hda_dict[ 'api_type' ] = "file" + + # Add additional attributes that depend on trans must be added here rather than at the model level. + can_access_hda = trans.app.security_agent.can_access_dataset( trans.get_current_user_roles(), hda.dataset ) + can_access_hda = ( trans.user_is_admin() or can_access_hda ) + if not can_access_hda: + return self.get_inaccessible_hda_dict( trans, hda ) + hda_dict[ 'accessible' ] = True + + #TODO: I'm unclear as to which access pattern is right + hda_dict[ 'annotation' ] = hda.get_item_annotation_str( trans.sa_session, hda.history.user, hda ) + #annotation = getattr( hda, 'annotation', hda.get_item_annotation_str( trans.sa_session, trans.user, hda ) ) + + # ---- return here if deleted AND purged OR can't access + purged = ( hda.purged or hda.dataset.purged ) + if ( hda.deleted and purged ): + #TODO: to_dict should really go AFTER this - only summary data + return trans.security.encode_dict_ids( hda_dict ) + + if expose_dataset_path: + try: + hda_dict[ 'file_name' ] = hda.file_name + except objectstore.ObjectNotFound: + log.exception( 'objectstore.ObjectNotFound, HDA %s.', hda.id ) + + hda_dict[ 'download_url' ] = galaxy.web.url_for( 'history_contents_display', + history_id = trans.security.encode_id( hda.history.id ), + history_content_id = trans.security.encode_id( hda.id ) ) + + # indeces, assoc. metadata files, etc. + meta_files = [] + for meta_type in hda.metadata.spec.keys(): + if isinstance( hda.metadata.spec[ meta_type ].param, galaxy.datatypes.metadata.FileParameter ): + meta_files.append( dict( file_type=meta_type ) ) + if meta_files: + hda_dict[ 'meta_files' ] = meta_files + + # currently, the viz reg is optional - handle on/off + if trans.app.visualizations_registry: + hda_dict[ 'visualizations' ] = trans.app.visualizations_registry.get_visualizations( trans, hda ) + else: + hda_dict[ 'visualizations' ] = hda.get_visualizations() + #TODO: it may also be wiser to remove from here and add as API call that loads the visualizations + # when the visualizations button is clicked (instead of preloading/pre-checking) + + # ---- return here if deleted + if hda.deleted and not purged: + return trans.security.encode_dict_ids( hda_dict ) + + return trans.security.encode_dict_ids( hda_dict ) + + def get_inaccessible_hda_dict( self, trans, hda ): + """ + Return truncated serialization of HDA when inaccessible to user. + """ + return trans.security.encode_dict_ids({ + 'id' : hda.id, + 'history_id': hda.history.id, + 'hid' : hda.hid, + 'name' : hda.name, + 'state' : hda.state, + 'deleted' : hda.deleted, + 'visible' : hda.visible, + 'accessible': False + }) + + def get_hda_dict_with_error( self, trans, hda=None, history_id=None, id=None, error_msg='Error' ): + """ + Return truncated serialization of HDA when error raised getting + details. + """ + return trans.security.encode_dict_ids({ + 'id' : hda.id if hda else id, + 'history_id': hda.history.id if hda else history_id, + 'hid' : hda.hid if hda else '(unknown)', + 'name' : hda.name if hda else '(unknown)', + 'error' : error_msg, + 'state' : trans.model.Dataset.states.NEW + }) + + def get_display_apps( self, trans, hda ): + """ + Return dictionary containing new-style display app urls. + """ + display_apps = [] + for display_app in hda.get_display_applications( trans ).itervalues(): + + app_links = [] + for link_app in display_app.links.itervalues(): + app_links.append({ + 'target': link_app.url.get( 'target_frame', '_blank' ), + 'href' : link_app.get_display_url( hda, trans ), + 'text' : gettext( link_app.name ) + }) + if app_links: + display_apps.append( dict( label=display_app.name, links=app_links ) ) + + return display_apps + + def get_old_display_applications( self, trans, hda ): + """ + Return dictionary containing old-style display app urls. + """ + display_apps = [] + if not trans.app.config.enable_old_display_applications: + return display_apps + + for display_app in hda.datatype.get_display_types(): + target_frame, display_links = hda.datatype.get_display_links( hda, + display_app, trans.app, trans.request.base ) + + if len( display_links ) > 0: + display_label = hda.datatype.get_display_label( display_app ) + + app_links = [] + for display_name, display_link in display_links: + app_links.append({ + 'target': target_frame, + 'href' : display_link, + 'text' : gettext( display_name ) + }) + if app_links: + display_apps.append( dict( label=display_label, links=app_links ) ) + + return display_apps + + +# ============================================================================= +class HistorySerializer( manager_base.ModelSerializer ): + """ + Interface/service object for serializing HDAs into dictionaries. + """ + pass diff -r 1861cbcc610da6e519c7760e1c829ec3b66887f4 -r 65ec063664eb0ce100d76d985fba93f200ac5178 lib/galaxy/managers/histories.py --- a/lib/galaxy/managers/histories.py +++ b/lib/galaxy/managers/histories.py @@ -1,9 +1,32 @@ +""" +Manager and Serializer for histories. + +Histories are containers for datasets or dataset collections +created (or copied) by users over the course of an analysis. +""" + from galaxy import exceptions from galaxy.model import orm +from galaxy.managers import base as manager_base +import galaxy.managers.hdas -class HistoryManager( object ): +import galaxy.web +import galaxy.dataset_collections.util + +import logging +log = logging.getLogger( __name__ ) + + +# ============================================================================= +class HistoryManager( manager_base.ModelManager ): + """ + Interface/service object for interacting with HDAs. + """ + #TODO: all the following would be more useful if passed the user instead of defaulting to trans.user + def __init__( self, *args, **kwargs ): + super( HistoryManager, self ).__init__( *args, **kwargs ) def get( self, trans, unencoded_id, check_ownership=True, check_accessible=True, deleted=None ): """ @@ -44,7 +67,7 @@ def secure( self, trans, history, check_ownership=True, check_accessible=True ): """ - checks if (a) user owns item or (b) item is accessible to user. + Checks if (a) user owns item or (b) item is accessible to user. """ # all items are accessible to an admin if trans.user and trans.user_is_admin(): @@ -56,15 +79,28 @@ return history def is_current( self, trans, history ): + """ + True if the given history is the user's current history. + + Returns False if the session has no current history. + """ + if trans.history is None: + return False return trans.history == history def is_owner( self, trans, history ): + """ + True if the current user is the owner of the given history. + """ # anon users are only allowed to view their current history if not trans.user: return self.is_current( trans, history ) return trans.user == history.user def check_ownership( self, trans, history ): + """ + Raises error if the current user is not the owner of the history. + """ if trans.user and trans.user_is_admin(): return history if not trans.user and not self.is_current( trans, history ): @@ -74,6 +110,9 @@ raise exceptions.ItemOwnershipException( "History is not owned by the current user", type='error' ) def is_accessible( self, trans, history ): + """ + True if the user can access (read) the current history. + """ # admin always have access if trans.user and trans.user_is_admin(): return True @@ -88,6 +127,103 @@ return False def check_accessible( self, trans, history ): + """ + Raises error if the current user can't access the history. + """ if self.is_accessible( trans, history ): return history raise exceptions.ItemAccessibilityException( "History is not accessible to the current user", type='error' ) + + #TODO: bleh... + def _get_history_data( self, trans, history ): + """ + Returns a dictionary containing ``history`` and ``contents``, serialized + history and an array of serialized history contents respectively. + """ + hda_mgr = galaxy.managers.hdas.HDAManager() + collection_dictifier = galaxy.dataset_collections.util.dictify_dataset_collection_instance + + history_dictionary = {} + contents_dictionaries = [] + try: + #for content in history.contents_iter( **contents_kwds ): + for content in history.contents_iter( types=[ 'dataset', 'dataset_collection' ] ): + hda_dict = {} + + if isinstance( content, trans.app.model.HistoryDatasetAssociation ): + try: + hda_dict = hda_mgr.get_hda_dict( trans, content ) + except Exception, exc: + # don't fail entire list if hda err's, record and move on + log.exception( 'Error bootstrapping hda: %s', exc ) + hda_dict = hda_mgr.get_hda_dict_with_error( trans, content, str( exc ) ) + + elif isinstance( content, trans.app.model.HistoryDatasetCollectionAssociation ): + try: + service = trans.app.dataset_collections_service + dataset_collection_instance = service.get_dataset_collection_instance( + trans=trans, + instance_type='history', + id=trans.security.encode_id( content.id ), + ) + hda_dict = collection_dictifier( dataset_collection_instance, + security=trans.security, parent=dataset_collection_instance.history, view="element" ) + + except Exception, exc: + log.exception( "Error in history API at listing dataset collection: %s", exc ) + #TODO: return some dict with the error + + contents_dictionaries.append( hda_dict ) + + # re-use the hdas above to get the history data... + history_dictionary = self.get_history_dict( trans, history, contents_dictionaries=contents_dictionaries ) + + except Exception, exc: + user_id = str( trans.user.id ) if trans.user else '(anonymous)' + log.exception( 'Error bootstrapping history for user %s: %s', user_id, str( exc ) ) + message = ( 'An error occurred getting the history data from the server. ' + + 'Please contact a Galaxy administrator if the problem persists.' ) + history_dictionary[ 'error' ] = message + + return { + 'history' : history_dictionary, + 'contents' : contents_dictionaries + } + + def get_history_dict( self, trans, history, contents_dictionaries=None ): + """ + Returns history data in the form of a dictionary. + """ + #TODO: to serializer + history_dict = history.to_dict( view='element', value_mapper={ 'id':trans.security.encode_id }) + history_dict[ 'user_id' ] = None + if history.user_id: + history_dict[ 'user_id' ] = trans.security.encode_id( history.user_id ) + + history_dict[ 'nice_size' ] = history.get_disk_size( nice_size=True ) + history_dict[ 'annotation' ] = history.get_item_annotation_str( trans.sa_session, history.user, history ) + if not history_dict[ 'annotation' ]: + history_dict[ 'annotation' ] = '' + + #TODO: item_slug url + if history_dict[ 'importable' ] and history_dict[ 'slug' ]: + username_and_slug = ( '/' ).join(( 'u', history.user.username, 'h', history_dict[ 'slug' ] )) + history_dict[ 'username_and_slug' ] = username_and_slug + +#TODO: re-add + #hda_summaries = hda_dictionaries if hda_dictionaries else self.get_hda_summary_dicts( trans, history ) + ##TODO remove the following in v2 + #( state_counts, state_ids ) = self._get_hda_state_summaries( trans, hda_summaries ) + #history_dict[ 'state_details' ] = state_counts + #history_dict[ 'state_ids' ] = state_ids + #history_dict[ 'state' ] = self._get_history_state_from_hdas( trans, history, state_counts ) + + return history_dict + + +# ============================================================================= +class HistorySerializer( manager_base.ModelSerializer ): + """ + Interface/service object for serializing histories into dictionaries. + """ + pass diff -r 1861cbcc610da6e519c7760e1c829ec3b66887f4 -r 65ec063664eb0ce100d76d985fba93f200ac5178 lib/galaxy/webapps/galaxy/api/history_contents.py --- a/lib/galaxy/webapps/galaxy/api/history_contents.py +++ b/lib/galaxy/webapps/galaxy/api/history_contents.py @@ -92,7 +92,7 @@ else: types = [ 'dataset', "dataset_collection" ] - contents_kwds = {'types': types} + contents_kwds = { 'types': types } if ids: ids = map( lambda id: trans.security.decode_id( id ), ids.split( ',' ) ) contents_kwds[ 'ids' ] = ids @@ -110,14 +110,14 @@ details = util.listify( details ) for content in history.contents_iter( **contents_kwds ): - if isinstance(content, trans.app.model.HistoryDatasetAssociation): + if isinstance( content, trans.app.model.HistoryDatasetAssociation ): encoded_content_id = trans.security.encode_id( content.id ) detailed = details == 'all' or ( encoded_content_id in details ) if detailed: rval.append( self._detailed_hda_dict( trans, content ) ) else: rval.append( self._summary_hda_dict( trans, history_id, content ) ) - elif isinstance(content, trans.app.model.HistoryDatasetCollectionAssociation): + elif isinstance( content, trans.app.model.HistoryDatasetCollectionAssociation ): rval.append( self.__collection_dict( trans, content ) ) return rval @@ -149,7 +149,8 @@ } def __collection_dict( self, trans, dataset_collection_instance, view="collection" ): - return dictify_dataset_collection_instance( dataset_collection_instance, security=trans.security, parent=dataset_collection_instance.history, view=view ) + return dictify_dataset_collection_instance( dataset_collection_instance, + security=trans.security, parent=dataset_collection_instance.history, view=view ) def _detailed_hda_dict( self, trans, hda ): """ @@ -201,8 +202,7 @@ ) return self.__collection_dict( trans, dataset_collection_instance, view="element" ) except Exception, e: - msg = "Error in history API at listing dataset collection: %s" % ( str(e) ) - log.error( msg, exc_info=True ) + log.exception( "Error in history API at listing dataset collection: %s", e ) trans.response.status = 500 return msg diff -r 1861cbcc610da6e519c7760e1c829ec3b66887f4 -r 65ec063664eb0ce100d76d985fba93f200ac5178 lib/galaxy/webapps/galaxy/controllers/history.py --- a/lib/galaxy/webapps/galaxy/controllers/history.py +++ b/lib/galaxy/webapps/galaxy/controllers/history.py @@ -4,6 +4,7 @@ import galaxy.util from galaxy import model from galaxy import web +from galaxy import managers from galaxy.datatypes.data import nice_size from galaxy.model.item_attrs import UsesAnnotations, UsesItemRatings from galaxy.model.orm import and_, eagerload_all, func @@ -194,6 +195,12 @@ class HistoryController( BaseUIController, SharableMixin, UsesAnnotations, UsesItemRatings, UsesHistoryMixin, UsesHistoryDatasetAssociationMixin, ExportsHistoryMixin, ImportsHistoryMixin ): + def __init__( self, app ): + super( HistoryController, self ).__init__( app ) + self.mgrs = util.bunch.Bunch( + histories=managers.histories.HistoryManager() + ) + @web.expose def index( self, trans ): return "" @@ -204,6 +211,7 @@ trans.response.set_content_type( 'text/xml' ) return trans.fill_template( "/history/list_as_xml.mako" ) + # ......................................................................... lists stored_list_grid = HistoryListGrid() shared_list_grid = SharedHistoryListGrid() published_list_grid = HistoryAllPublishedGrid() @@ -437,6 +445,7 @@ # Render the list view return self.shared_list_grid( trans, status=status, message=message, **kwargs ) + # ......................................................................... html @web.expose def display_structured( self, trans, id=None ): """ @@ -512,6 +521,435 @@ return trans.fill_template( "history/display_structured.mako", items=items, history=history ) @web.expose + def view( self, trans, id=None, show_deleted=False, show_hidden=False, use_panels=True ): + """ + View a history. If a history is importable, then it is viewable by any user. + """ + # Get history to view. + if not id: + return trans.show_error_message( "You must specify a history you want to view." ) + + show_deleted = galaxy.util.string_as_bool( show_deleted ) + show_hidden = galaxy.util.string_as_bool( show_hidden ) + use_panels = galaxy.util.string_as_bool( use_panels ) + + history_dictionary = {} + hda_dictionaries = [] + user_is_owner = False + try: + history_to_view = self.get_history( trans, id, check_ownership=False, check_accessible=False ) + if not history_to_view: + return trans.show_error_message( "The specified history does not exist." ) + if history_to_view.user == trans.user: + user_is_owner = True + + if( ( history_to_view.user != trans.user ) + # Admin users can view any history + and ( not trans.user_is_admin() ) + and ( not history_to_view.importable ) + and ( trans.user not in history_to_view.users_shared_with_dot_users ) ): + return trans.show_error_message( "Either you are not allowed to view this history" + + " or the owner of this history has not made it accessible." ) + + # include all datasets: hidden, deleted, and purged + history_data = self.mgrs.histories._get_history_data( trans, history_to_view ) + history_dictionary = history_data[ 'history' ] + hda_dictionaries = history_data[ 'contents' ] + + except Exception, exc: + user_id = str( trans.user.id ) if trans.user else '(anonymous)' + log.exception( 'Error bootstrapping history for user %s: %s', user_id, str( exc ) ) + history_dictionary[ 'error' ] = ( 'An error occurred getting the history data from the server. ' + + 'Please contact a Galaxy administrator if the problem persists.' ) + + return trans.fill_template_mako( "history/view.mako", + history=history_dictionary, hdas=hda_dictionaries, user_is_owner=user_is_owner, + show_deleted=show_deleted, show_hidden=show_hidden, use_panels=use_panels ) + + @web.expose + def display_by_username_and_slug( self, trans, username, slug ): + """ + Display history based on a username and slug. + """ + # Get history. + session = trans.sa_session + user = session.query( model.User ).filter_by( username=username ).first() + history = trans.sa_session.query( model.History ).filter_by( user=user, slug=slug, deleted=False ).first() + if history is None: + raise web.httpexceptions.HTTPNotFound() + # Security check raises error if user cannot access history. + self.security_check( trans, history, False, True) + + # Get rating data. + user_item_rating = 0 + if trans.get_user(): + user_item_rating = self.get_user_item_rating( trans.sa_session, trans.get_user(), history ) + if user_item_rating: + user_item_rating = user_item_rating.rating + else: + user_item_rating = 0 + ave_item_rating, num_ratings = self.get_ave_item_rating_data( trans.sa_session, history ) + + # create ownership flag for template, dictify models + user_is_owner = trans.user == history.user + history_data = self.mgrs.histories._get_history_data( trans, history ) + history_dict = history_data[ 'history' ] + hda_dicts = history_data[ 'contents' ] + + history_dict[ 'annotation' ] = self.get_item_annotation_str( trans.sa_session, history.user, history ) + # note: adding original annotation since this is published - get_dict returns user-based annos + #for hda_dict in hda_dicts: + # hda_dict[ 'annotation' ] = hda.annotation + # dataset.annotation = self.get_item_annotation_str( trans.sa_session, history.user, dataset ) + + return trans.stream_template_mako( "history/display.mako", item=history, item_data=[], + user_is_owner=user_is_owner, history_dict=history_dict, hda_dicts=hda_dicts, + user_item_rating = user_item_rating, ave_item_rating=ave_item_rating, num_ratings=num_ratings ) + + # ......................................................................... sharing & publishing + @web.expose + @web.require_login( "share Galaxy histories" ) + def sharing( self, trans, id=None, histories=[], **kwargs ): + """ Handle history sharing. """ + + # Get session and histories. + session = trans.sa_session + # Id values take precedence over histories passed in; last resort is current history. + if id: + ids = galaxy.util.listify( id ) + if ids: + histories = [ self.get_history( trans, history_id ) for history_id in ids ] + elif not histories: + histories = [ trans.history ] + + # Do operation on histories. + for history in histories: + if 'make_accessible_via_link' in kwargs: + self._make_item_accessible( trans.sa_session, history ) + elif 'make_accessible_and_publish' in kwargs: + self._make_item_accessible( trans.sa_session, history ) + history.published = True + elif 'publish' in kwargs: + if history.importable: + history.published = True + else: + # TODO: report error here. + pass + elif 'disable_link_access' in kwargs: + history.importable = False + elif 'unpublish' in kwargs: + history.published = False + elif 'disable_link_access_and_unpublish' in kwargs: + history.importable = history.published = False + elif 'unshare_user' in kwargs: + user = trans.sa_session.query( trans.app.model.User ).get( trans.security.decode_id( kwargs[ 'unshare_user' ] ) ) + # Look for and delete sharing relation for history-user. + deleted_sharing_relation = False + husas = trans.sa_session.query( trans.app.model.HistoryUserShareAssociation ).filter_by( user=user, history=history ).all() + if husas: + deleted_sharing_relation = True + for husa in husas: + trans.sa_session.delete( husa ) + if not deleted_sharing_relation: + message = "History '%s' does not seem to be shared with user '%s'" % ( history.name, user.email ) + return trans.fill_template( '/sharing_base.mako', item=history, + message=message, status='error' ) + + + # Legacy issue: histories made accessible before recent updates may not have a slug. Create slug for any histories that need them. + for history in histories: + if history.importable and not history.slug: + self._make_item_accessible( trans.sa_session, history ) + + session.flush() + + return trans.fill_template( "/sharing_base.mako", item=history ) + + @web.expose + @web.require_login( "share histories with other users" ) + def share( self, trans, id=None, email="", **kwd ): + # If a history contains both datasets that can be shared and others that cannot be shared with the desired user, + # then the entire history is shared, and the protected datasets will be visible, but inaccessible ( greyed out ) + # in the copyd history + params = Params( kwd ) + user = trans.get_user() + # TODO: we have too many error messages floating around in here - we need + # to incorporate the messaging system used by the libraries that will display + # a message on any page. + err_msg = galaxy.util.restore_text( params.get( 'err_msg', '' ) ) + if not email: + if not id: + # Default to the current history + id = trans.security.encode_id( trans.history.id ) + id = galaxy.util.listify( id ) + send_to_err = err_msg + histories = [] + for history_id in id: + histories.append( self.get_history( trans, history_id ) ) + return trans.fill_template( "/history/share.mako", + histories=histories, + email=email, + send_to_err=send_to_err ) + histories, send_to_users, send_to_err = self._get_histories_and_users( trans, user, id, email ) + if not send_to_users: + if not send_to_err: + send_to_err += "%s is not a valid Galaxy user. %s" % ( email, err_msg ) + return trans.fill_template( "/history/share.mako", + histories=histories, + email=email, + send_to_err=send_to_err ) + if params.get( 'share_button', False ): + # The user has not yet made a choice about how to share, so dictionaries will be built for display + can_change, cannot_change, no_change_needed, unique_no_change_needed, send_to_err = \ + self._populate_restricted( trans, user, histories, send_to_users, None, send_to_err, unique=True ) + send_to_err += err_msg + if cannot_change and not no_change_needed and not can_change: + send_to_err = "The histories you are sharing do not contain any datasets that can be accessed by the users with which you are sharing." + return trans.fill_template( "/history/share.mako", histories=histories, email=email, send_to_err=send_to_err ) + if can_change or cannot_change: + return trans.fill_template( "/history/share.mako", + histories=histories, + email=email, + send_to_err=send_to_err, + can_change=can_change, + cannot_change=cannot_change, + no_change_needed=unique_no_change_needed ) + if no_change_needed: + return self._share_histories( trans, user, send_to_err, histories=no_change_needed ) + elif not send_to_err: + # User seems to be sharing an empty history + send_to_err = "You cannot share an empty history. " + return trans.fill_template( "/history/share.mako", histories=histories, email=email, send_to_err=send_to_err ) + + @web.expose + @web.require_login( "share restricted histories with other users" ) + def share_restricted( self, trans, id=None, email="", **kwd ): + if 'action' in kwd: + action = kwd[ 'action' ] + else: + err_msg = "Select an action. " + return trans.response.send_redirect( url_for( controller='history', + action='share', + id=id, + email=email, + err_msg=err_msg, + share_button=True ) ) + user = trans.get_user() + user_roles = user.all_roles() + histories, send_to_users, send_to_err = self._get_histories_and_users( trans, user, id, email ) + send_to_err = '' + # The user has made a choice, so dictionaries will be built for sharing + can_change, cannot_change, no_change_needed, unique_no_change_needed, send_to_err = \ + self._populate_restricted( trans, user, histories, send_to_users, action, send_to_err ) + # Now that we've populated the can_change, cannot_change, and no_change_needed dictionaries, + # we'll populate the histories_for_sharing dictionary from each of them. + histories_for_sharing = {} + if no_change_needed: + # Don't need to change anything in cannot_change, so populate as is + histories_for_sharing, send_to_err = \ + self._populate( trans, histories_for_sharing, no_change_needed, send_to_err ) + if cannot_change: + # Can't change anything in cannot_change, so populate as is + histories_for_sharing, send_to_err = \ + self._populate( trans, histories_for_sharing, cannot_change, send_to_err ) + # The action here is either 'public' or 'private', so we'll continue to populate the + # histories_for_sharing dictionary from the can_change dictionary. + for send_to_user, history_dict in can_change.items(): + for history in history_dict: + # Make sure the current history has not already been shared with the current send_to_user + if trans.sa_session.query( trans.app.model.HistoryUserShareAssociation ) \ + .filter( and_( trans.app.model.HistoryUserShareAssociation.table.c.user_id == send_to_user.id, + trans.app.model.HistoryUserShareAssociation.table.c.history_id == history.id ) ) \ + .count() > 0: + send_to_err += "History (%s) already shared with user (%s)" % ( history.name, send_to_user.email ) + else: + # Only deal with datasets that have not been purged + for hda in history.activatable_datasets: + # If the current dataset is not public, we may need to perform an action on it to + # make it accessible by the other user. + if not trans.app.security_agent.can_access_dataset( send_to_user.all_roles(), hda.dataset ): + # The user with which we are sharing the history does not have access permission on the current dataset + if trans.app.security_agent.can_manage_dataset( user_roles, hda.dataset ) and not hda.dataset.library_associations: + # The current user has authority to change permissions on the current dataset because + # they have permission to manage permissions on the dataset and the dataset is not associated + # with a library. + if action == "private": + trans.app.security_agent.privately_share_dataset( hda.dataset, users=[ user, send_to_user ] ) + elif action == "public": + trans.app.security_agent.make_dataset_public( hda.dataset ) + # Populate histories_for_sharing with the history after performing any requested actions on + # its datasets to make them accessible by the other user. + if send_to_user not in histories_for_sharing: + histories_for_sharing[ send_to_user ] = [ history ] + elif history not in histories_for_sharing[ send_to_user ]: + histories_for_sharing[ send_to_user ].append( history ) + return self._share_histories( trans, user, send_to_err, histories=histories_for_sharing ) + + def _get_histories_and_users( self, trans, user, id, email ): + if not id: + # Default to the current history + id = trans.security.encode_id( trans.history.id ) + id = galaxy.util.listify( id ) + send_to_err = "" + histories = [] + for history_id in id: + histories.append( self.get_history( trans, history_id ) ) + send_to_users = [] + for email_address in galaxy.util.listify( email ): + email_address = email_address.strip() + if email_address: + if email_address == user.email: + send_to_err += "You cannot send histories to yourself. " + else: + send_to_user = trans.sa_session.query( trans.app.model.User ) \ + .filter( and_( trans.app.model.User.table.c.email==email_address, + trans.app.model.User.table.c.deleted==False ) ) \ + .first() + if send_to_user: + send_to_users.append( send_to_user ) + else: + send_to_err += "%s is not a valid Galaxy user. " % email_address + return histories, send_to_users, send_to_err + + def _populate( self, trans, histories_for_sharing, other, send_to_err ): + # This method will populate the histories_for_sharing dictionary with the users and + # histories in other, eliminating histories that have already been shared with the + # associated user. No security checking on datasets is performed. + # If not empty, the histories_for_sharing dictionary looks like: + # { userA: [ historyX, historyY ], userB: [ historyY ] } + # other looks like: + # { userA: {historyX : [hda, hda], historyY : [hda]}, userB: {historyY : [hda]} } + for send_to_user, history_dict in other.items(): + for history in history_dict: + # Make sure the current history has not already been shared with the current send_to_user + if trans.sa_session.query( trans.app.model.HistoryUserShareAssociation ) \ + .filter( and_( trans.app.model.HistoryUserShareAssociation.table.c.user_id == send_to_user.id, + trans.app.model.HistoryUserShareAssociation.table.c.history_id == history.id ) ) \ + .count() > 0: + send_to_err += "History (%s) already shared with user (%s)" % ( history.name, send_to_user.email ) + else: + # Build the dict that will be used for sharing + if send_to_user not in histories_for_sharing: + histories_for_sharing[ send_to_user ] = [ history ] + elif history not in histories_for_sharing[ send_to_user ]: + histories_for_sharing[ send_to_user ].append( history ) + return histories_for_sharing, send_to_err + + def _populate_restricted( self, trans, user, histories, send_to_users, action, send_to_err, unique=False ): + # The user may be attempting to share histories whose datasets cannot all be accessed by other users. + # If this is the case, the user sharing the histories can: + # 1) action=='public': choose to make the datasets public if he is permitted to do so + # 2) action=='private': automatically create a new "sharing role" allowing protected + # datasets to be accessed only by the desired users + # This method will populate the can_change, cannot_change and no_change_needed dictionaries, which + # are used for either displaying to the user, letting them make 1 of the choices above, or sharing + # after the user has made a choice. They will be used for display if 'unique' is True, and will look + # like: {historyX : [hda, hda], historyY : [hda] } + # For sharing, they will look like: + # { userA: {historyX : [hda, hda], historyY : [hda]}, userB: {historyY : [hda]} } + can_change = {} + cannot_change = {} + no_change_needed = {} + unique_no_change_needed = {} + user_roles = user.all_roles() + for history in histories: + for send_to_user in send_to_users: + # Make sure the current history has not already been shared with the current send_to_user + if trans.sa_session.query( trans.app.model.HistoryUserShareAssociation ) \ + .filter( and_( trans.app.model.HistoryUserShareAssociation.table.c.user_id == send_to_user.id, + trans.app.model.HistoryUserShareAssociation.table.c.history_id == history.id ) ) \ + .count() > 0: + send_to_err += "History (%s) already shared with user (%s)" % ( history.name, send_to_user.email ) + else: + # Only deal with datasets that have not been purged + for hda in history.activatable_datasets: + if trans.app.security_agent.can_access_dataset( send_to_user.all_roles(), hda.dataset ): + # The no_change_needed dictionary is a special case. If both of can_change + # and cannot_change are empty, no_change_needed will used for sharing. Otherwise + # unique_no_change_needed will be used for displaying, so we need to populate both. + # Build the dictionaries for display, containing unique histories only + if history not in unique_no_change_needed: + unique_no_change_needed[ history ] = [ hda ] + else: + unique_no_change_needed[ history ].append( hda ) + # Build the dictionaries for sharing + if send_to_user not in no_change_needed: + no_change_needed[ send_to_user ] = {} + if history not in no_change_needed[ send_to_user ]: + no_change_needed[ send_to_user ][ history ] = [ hda ] + else: + no_change_needed[ send_to_user ][ history ].append( hda ) + else: + # The user with which we are sharing the history does not have access permission on the current dataset + if trans.app.security_agent.can_manage_dataset( user_roles, hda.dataset ): + # The current user has authority to change permissions on the current dataset because + # they have permission to manage permissions on the dataset. + # NOTE: ( gvk )There may be problems if the dataset also has an ldda, but I don't think so + # because the user with which we are sharing will not have the "manage permission" permission + # on the dataset in their history. Keep an eye on this though... + if unique: + # Build the dictionaries for display, containing unique histories only + if history not in can_change: + can_change[ history ] = [ hda ] + else: + can_change[ history ].append( hda ) + else: + # Build the dictionaries for sharing + if send_to_user not in can_change: + can_change[ send_to_user ] = {} + if history not in can_change[ send_to_user ]: + can_change[ send_to_user ][ history ] = [ hda ] + else: + can_change[ send_to_user ][ history ].append( hda ) + else: + if action in [ "private", "public" ]: + # The user has made a choice, so 'unique' doesn't apply. Don't change stuff + # that the user doesn't have permission to change + continue + if unique: + # Build the dictionaries for display, containing unique histories only + if history not in cannot_change: + cannot_change[ history ] = [ hda ] + else: + cannot_change[ history ].append( hda ) + else: + # Build the dictionaries for sharing + if send_to_user not in cannot_change: + cannot_change[ send_to_user ] = {} + if history not in cannot_change[ send_to_user ]: + cannot_change[ send_to_user ][ history ] = [ hda ] + else: + cannot_change[ send_to_user ][ history ].append( hda ) + return can_change, cannot_change, no_change_needed, unique_no_change_needed, send_to_err + + def _share_histories( self, trans, user, send_to_err, histories=None ): + # histories looks like: { userA: [ historyX, historyY ], userB: [ historyY ] } + histories = histories or {} + msg = "" + sent_to_emails = [] + for send_to_user in histories.keys(): + sent_to_emails.append( send_to_user.email ) + emails = ",".join( e for e in sent_to_emails ) + if not histories: + send_to_err += "No users have been specified or no histories can be sent without changing permissions or associating a sharing role. " + else: + for send_to_user, send_to_user_histories in histories.items(): + shared_histories = [] + for history in send_to_user_histories: + share = trans.app.model.HistoryUserShareAssociation() + share.history = history + share.user = send_to_user + trans.sa_session.add( share ) + self.create_item_slug( trans.sa_session, history ) + trans.sa_session.flush() + if history not in shared_histories: + shared_histories.append( history ) + if send_to_err: + msg += send_to_err + return self.sharing( trans, histories=shared_histories, msg=msg ) + + # ......................................................................... actions/orig. async + @web.expose def delete_hidden_datasets( self, trans ): """ This method deletes all hidden datasets in the current history. @@ -839,451 +1277,6 @@ #TODO: used in history/view, display, embed @web.expose - def view( self, trans, id=None, show_deleted=False, show_hidden=False, use_panels=True ): - """ - View a history. If a history is importable, then it is viewable by any user. - """ - # Get history to view. - if not id: - return trans.show_error_message( "You must specify a history you want to view." ) - - show_deleted = galaxy.util.string_as_bool( show_deleted ) - show_hidden = galaxy.util.string_as_bool( show_hidden ) - use_panels = galaxy.util.string_as_bool( use_panels ) - - history_dictionary = {} - hda_dictionaries = [] - user_is_owner = False - try: - history_to_view = self.get_history( trans, id, check_ownership=False, check_accessible=False ) - if not history_to_view: - return trans.show_error_message( "The specified history does not exist." ) - if history_to_view.user == trans.user: - user_is_owner = True - - if( ( history_to_view.user != trans.user ) - # Admin users can view any history - and ( not trans.user_is_admin() ) - and ( not history_to_view.importable ) - and ( trans.user not in history_to_view.users_shared_with_dot_users ) ): - return trans.show_error_message( "Either you are not allowed to view this history" - + " or the owner of this history has not made it accessible." ) - - # include all datasets: hidden, deleted, and purged - hdas = self.get_history_datasets( trans, history_to_view, - show_deleted=True, show_hidden=True, show_purged=True ) - for hda in hdas: - hda_dict = {} - try: - hda_dict = self.get_hda_dict( trans, hda ) - - except Exception, exc: - # don't fail entire list if hda err's, record and move on - log.error( 'Error bootstrapping hda %d: %s', hda.id, str( exc ), exc_info=True ) - hda_dict = self.get_hda_dict_with_error( trans, hda, str( exc ) ) - - hda_dictionaries.append( hda_dict ) - - # re-use the hdas above to get the history data... - history_dictionary = self.get_history_dict( trans, history_to_view, hda_dictionaries=hda_dictionaries ) - - except Exception, exc: - user_id = str( trans.user.id ) if trans.user else '(anonymous)' - log.exception( 'Error bootstrapping history for user %s: %s', user_id, str( exc ) ) - history_dictionary[ 'error' ] = ( 'An error occurred getting the history data from the server. ' - + 'Please contact a Galaxy administrator if the problem persists.' ) - - return trans.fill_template_mako( "history/view.mako", - history=history_dictionary, hdas=hda_dictionaries, user_is_owner=user_is_owner, - show_deleted=show_deleted, show_hidden=show_hidden, use_panels=use_panels ) - - @web.expose - def display_by_username_and_slug( self, trans, username, slug ): - """ - Display history based on a username and slug. - """ - # Get history. - session = trans.sa_session - user = session.query( model.User ).filter_by( username=username ).first() - history = trans.sa_session.query( model.History ).filter_by( user=user, slug=slug, deleted=False ).first() - if history is None: - raise web.httpexceptions.HTTPNotFound() - # Security check raises error if user cannot access history. - self.security_check( trans, history, False, True) - - # Get datasets and annotations - datasets = self.get_history_datasets( trans, history ) - history.annotation = self.get_item_annotation_str( trans.sa_session, history.user, history ) - for dataset in datasets: - dataset.annotation = self.get_item_annotation_str( trans.sa_session, history.user, dataset ) - - # Get rating data. - user_item_rating = 0 - if trans.get_user(): - user_item_rating = self.get_user_item_rating( trans.sa_session, trans.get_user(), history ) - if user_item_rating: - user_item_rating = user_item_rating.rating - else: - user_item_rating = 0 - ave_item_rating, num_ratings = self.get_ave_item_rating_data( trans.sa_session, history ) - - # create ownership flag for template, dictify models - # note: adding original annotation since this is published - get_dict returns user-based annos - user_is_owner = trans.user == history.user - hda_dicts = [] - for hda in datasets: - hda_dict = self.get_hda_dict( trans, hda ) - hda_dict[ 'annotation' ] = hda.annotation - hda_dicts.append( hda_dict ) - history_dict = self.get_history_dict( trans, history, hda_dictionaries=hda_dicts ) - history_dict[ 'annotation' ] = history.annotation - - return trans.stream_template_mako( "history/display.mako", item=history, item_data=datasets, - user_is_owner=user_is_owner, history_dict=history_dict, hda_dicts=hda_dicts, - user_item_rating = user_item_rating, ave_item_rating=ave_item_rating, num_ratings=num_ratings ) - - @web.expose - @web.require_login( "share Galaxy histories" ) - def sharing( self, trans, id=None, histories=[], **kwargs ): - """ Handle history sharing. """ - - # Get session and histories. - session = trans.sa_session - # Id values take precedence over histories passed in; last resort is current history. - if id: - ids = galaxy.util.listify( id ) - if ids: - histories = [ self.get_history( trans, history_id ) for history_id in ids ] - elif not histories: - histories = [ trans.history ] - - # Do operation on histories. - for history in histories: - if 'make_accessible_via_link' in kwargs: - self._make_item_accessible( trans.sa_session, history ) - elif 'make_accessible_and_publish' in kwargs: - self._make_item_accessible( trans.sa_session, history ) - history.published = True - elif 'publish' in kwargs: - if history.importable: - history.published = True - else: - # TODO: report error here. - pass - elif 'disable_link_access' in kwargs: - history.importable = False - elif 'unpublish' in kwargs: - history.published = False - elif 'disable_link_access_and_unpublish' in kwargs: - history.importable = history.published = False - elif 'unshare_user' in kwargs: - user = trans.sa_session.query( trans.app.model.User ).get( trans.security.decode_id( kwargs[ 'unshare_user' ] ) ) - # Look for and delete sharing relation for history-user. - deleted_sharing_relation = False - husas = trans.sa_session.query( trans.app.model.HistoryUserShareAssociation ).filter_by( user=user, history=history ).all() - if husas: - deleted_sharing_relation = True - for husa in husas: - trans.sa_session.delete( husa ) - if not deleted_sharing_relation: - message = "History '%s' does not seem to be shared with user '%s'" % ( history.name, user.email ) - return trans.fill_template( '/sharing_base.mako', item=history, - message=message, status='error' ) - - - # Legacy issue: histories made accessible before recent updates may not have a slug. Create slug for any histories that need them. - for history in histories: - if history.importable and not history.slug: - self._make_item_accessible( trans.sa_session, history ) - - session.flush() - - return trans.fill_template( "/sharing_base.mako", item=history ) - - @web.expose - @web.require_login( "share histories with other users" ) - def share( self, trans, id=None, email="", **kwd ): - # If a history contains both datasets that can be shared and others that cannot be shared with the desired user, - # then the entire history is shared, and the protected datasets will be visible, but inaccessible ( greyed out ) - # in the copyd history - params = Params( kwd ) - user = trans.get_user() - # TODO: we have too many error messages floating around in here - we need - # to incorporate the messaging system used by the libraries that will display - # a message on any page. - err_msg = galaxy.util.restore_text( params.get( 'err_msg', '' ) ) - if not email: - if not id: - # Default to the current history - id = trans.security.encode_id( trans.history.id ) - id = galaxy.util.listify( id ) - send_to_err = err_msg - histories = [] - for history_id in id: - histories.append( self.get_history( trans, history_id ) ) - return trans.fill_template( "/history/share.mako", - histories=histories, - email=email, - send_to_err=send_to_err ) - histories, send_to_users, send_to_err = self._get_histories_and_users( trans, user, id, email ) - if not send_to_users: - if not send_to_err: - send_to_err += "%s is not a valid Galaxy user. %s" % ( email, err_msg ) - return trans.fill_template( "/history/share.mako", - histories=histories, - email=email, - send_to_err=send_to_err ) - if params.get( 'share_button', False ): - # The user has not yet made a choice about how to share, so dictionaries will be built for display - can_change, cannot_change, no_change_needed, unique_no_change_needed, send_to_err = \ - self._populate_restricted( trans, user, histories, send_to_users, None, send_to_err, unique=True ) - send_to_err += err_msg - if cannot_change and not no_change_needed and not can_change: - send_to_err = "The histories you are sharing do not contain any datasets that can be accessed by the users with which you are sharing." - return trans.fill_template( "/history/share.mako", histories=histories, email=email, send_to_err=send_to_err ) - if can_change or cannot_change: - return trans.fill_template( "/history/share.mako", - histories=histories, - email=email, - send_to_err=send_to_err, - can_change=can_change, - cannot_change=cannot_change, - no_change_needed=unique_no_change_needed ) - if no_change_needed: - return self._share_histories( trans, user, send_to_err, histories=no_change_needed ) - elif not send_to_err: - # User seems to be sharing an empty history - send_to_err = "You cannot share an empty history. " - return trans.fill_template( "/history/share.mako", histories=histories, email=email, send_to_err=send_to_err ) - - @web.expose - @web.require_login( "share restricted histories with other users" ) - def share_restricted( self, trans, id=None, email="", **kwd ): - if 'action' in kwd: - action = kwd[ 'action' ] - else: - err_msg = "Select an action. " - return trans.response.send_redirect( url_for( controller='history', - action='share', - id=id, - email=email, - err_msg=err_msg, - share_button=True ) ) - user = trans.get_user() - user_roles = user.all_roles() - histories, send_to_users, send_to_err = self._get_histories_and_users( trans, user, id, email ) - send_to_err = '' - # The user has made a choice, so dictionaries will be built for sharing - can_change, cannot_change, no_change_needed, unique_no_change_needed, send_to_err = \ - self._populate_restricted( trans, user, histories, send_to_users, action, send_to_err ) - # Now that we've populated the can_change, cannot_change, and no_change_needed dictionaries, - # we'll populate the histories_for_sharing dictionary from each of them. - histories_for_sharing = {} - if no_change_needed: - # Don't need to change anything in cannot_change, so populate as is - histories_for_sharing, send_to_err = \ - self._populate( trans, histories_for_sharing, no_change_needed, send_to_err ) - if cannot_change: - # Can't change anything in cannot_change, so populate as is - histories_for_sharing, send_to_err = \ - self._populate( trans, histories_for_sharing, cannot_change, send_to_err ) - # The action here is either 'public' or 'private', so we'll continue to populate the - # histories_for_sharing dictionary from the can_change dictionary. - for send_to_user, history_dict in can_change.items(): - for history in history_dict: - # Make sure the current history has not already been shared with the current send_to_user - if trans.sa_session.query( trans.app.model.HistoryUserShareAssociation ) \ - .filter( and_( trans.app.model.HistoryUserShareAssociation.table.c.user_id == send_to_user.id, - trans.app.model.HistoryUserShareAssociation.table.c.history_id == history.id ) ) \ - .count() > 0: - send_to_err += "History (%s) already shared with user (%s)" % ( history.name, send_to_user.email ) - else: - # Only deal with datasets that have not been purged - for hda in history.activatable_datasets: - # If the current dataset is not public, we may need to perform an action on it to - # make it accessible by the other user. - if not trans.app.security_agent.can_access_dataset( send_to_user.all_roles(), hda.dataset ): - # The user with which we are sharing the history does not have access permission on the current dataset - if trans.app.security_agent.can_manage_dataset( user_roles, hda.dataset ) and not hda.dataset.library_associations: - # The current user has authority to change permissions on the current dataset because - # they have permission to manage permissions on the dataset and the dataset is not associated - # with a library. - if action == "private": - trans.app.security_agent.privately_share_dataset( hda.dataset, users=[ user, send_to_user ] ) - elif action == "public": - trans.app.security_agent.make_dataset_public( hda.dataset ) - # Populate histories_for_sharing with the history after performing any requested actions on - # its datasets to make them accessible by the other user. - if send_to_user not in histories_for_sharing: - histories_for_sharing[ send_to_user ] = [ history ] - elif history not in histories_for_sharing[ send_to_user ]: - histories_for_sharing[ send_to_user ].append( history ) - return self._share_histories( trans, user, send_to_err, histories=histories_for_sharing ) - - def _get_histories_and_users( self, trans, user, id, email ): - if not id: - # Default to the current history - id = trans.security.encode_id( trans.history.id ) - id = galaxy.util.listify( id ) - send_to_err = "" - histories = [] - for history_id in id: - histories.append( self.get_history( trans, history_id ) ) - send_to_users = [] - for email_address in galaxy.util.listify( email ): - email_address = email_address.strip() - if email_address: - if email_address == user.email: - send_to_err += "You cannot send histories to yourself. " - else: - send_to_user = trans.sa_session.query( trans.app.model.User ) \ - .filter( and_( trans.app.model.User.table.c.email==email_address, - trans.app.model.User.table.c.deleted==False ) ) \ - .first() - if send_to_user: - send_to_users.append( send_to_user ) - else: - send_to_err += "%s is not a valid Galaxy user. " % email_address - return histories, send_to_users, send_to_err - - def _populate( self, trans, histories_for_sharing, other, send_to_err ): - # This method will populate the histories_for_sharing dictionary with the users and - # histories in other, eliminating histories that have already been shared with the - # associated user. No security checking on datasets is performed. - # If not empty, the histories_for_sharing dictionary looks like: - # { userA: [ historyX, historyY ], userB: [ historyY ] } - # other looks like: - # { userA: {historyX : [hda, hda], historyY : [hda]}, userB: {historyY : [hda]} } - for send_to_user, history_dict in other.items(): - for history in history_dict: - # Make sure the current history has not already been shared with the current send_to_user - if trans.sa_session.query( trans.app.model.HistoryUserShareAssociation ) \ - .filter( and_( trans.app.model.HistoryUserShareAssociation.table.c.user_id == send_to_user.id, - trans.app.model.HistoryUserShareAssociation.table.c.history_id == history.id ) ) \ - .count() > 0: - send_to_err += "History (%s) already shared with user (%s)" % ( history.name, send_to_user.email ) - else: - # Build the dict that will be used for sharing - if send_to_user not in histories_for_sharing: - histories_for_sharing[ send_to_user ] = [ history ] - elif history not in histories_for_sharing[ send_to_user ]: - histories_for_sharing[ send_to_user ].append( history ) - return histories_for_sharing, send_to_err - - def _populate_restricted( self, trans, user, histories, send_to_users, action, send_to_err, unique=False ): - # The user may be attempting to share histories whose datasets cannot all be accessed by other users. - # If this is the case, the user sharing the histories can: - # 1) action=='public': choose to make the datasets public if he is permitted to do so - # 2) action=='private': automatically create a new "sharing role" allowing protected - # datasets to be accessed only by the desired users - # This method will populate the can_change, cannot_change and no_change_needed dictionaries, which - # are used for either displaying to the user, letting them make 1 of the choices above, or sharing - # after the user has made a choice. They will be used for display if 'unique' is True, and will look - # like: {historyX : [hda, hda], historyY : [hda] } - # For sharing, they will look like: - # { userA: {historyX : [hda, hda], historyY : [hda]}, userB: {historyY : [hda]} } - can_change = {} - cannot_change = {} - no_change_needed = {} - unique_no_change_needed = {} - user_roles = user.all_roles() - for history in histories: - for send_to_user in send_to_users: - # Make sure the current history has not already been shared with the current send_to_user - if trans.sa_session.query( trans.app.model.HistoryUserShareAssociation ) \ - .filter( and_( trans.app.model.HistoryUserShareAssociation.table.c.user_id == send_to_user.id, - trans.app.model.HistoryUserShareAssociation.table.c.history_id == history.id ) ) \ - .count() > 0: - send_to_err += "History (%s) already shared with user (%s)" % ( history.name, send_to_user.email ) - else: - # Only deal with datasets that have not been purged - for hda in history.activatable_datasets: - if trans.app.security_agent.can_access_dataset( send_to_user.all_roles(), hda.dataset ): - # The no_change_needed dictionary is a special case. If both of can_change - # and cannot_change are empty, no_change_needed will used for sharing. Otherwise - # unique_no_change_needed will be used for displaying, so we need to populate both. - # Build the dictionaries for display, containing unique histories only - if history not in unique_no_change_needed: - unique_no_change_needed[ history ] = [ hda ] - else: - unique_no_change_needed[ history ].append( hda ) - # Build the dictionaries for sharing - if send_to_user not in no_change_needed: - no_change_needed[ send_to_user ] = {} - if history not in no_change_needed[ send_to_user ]: - no_change_needed[ send_to_user ][ history ] = [ hda ] - else: - no_change_needed[ send_to_user ][ history ].append( hda ) - else: - # The user with which we are sharing the history does not have access permission on the current dataset - if trans.app.security_agent.can_manage_dataset( user_roles, hda.dataset ): - # The current user has authority to change permissions on the current dataset because - # they have permission to manage permissions on the dataset. - # NOTE: ( gvk )There may be problems if the dataset also has an ldda, but I don't think so - # because the user with which we are sharing will not have the "manage permission" permission - # on the dataset in their history. Keep an eye on this though... - if unique: - # Build the dictionaries for display, containing unique histories only - if history not in can_change: - can_change[ history ] = [ hda ] - else: - can_change[ history ].append( hda ) - else: - # Build the dictionaries for sharing - if send_to_user not in can_change: - can_change[ send_to_user ] = {} - if history not in can_change[ send_to_user ]: - can_change[ send_to_user ][ history ] = [ hda ] - else: - can_change[ send_to_user ][ history ].append( hda ) - else: - if action in [ "private", "public" ]: - # The user has made a choice, so 'unique' doesn't apply. Don't change stuff - # that the user doesn't have permission to change - continue - if unique: - # Build the dictionaries for display, containing unique histories only - if history not in cannot_change: - cannot_change[ history ] = [ hda ] - else: - cannot_change[ history ].append( hda ) - else: - # Build the dictionaries for sharing - if send_to_user not in cannot_change: - cannot_change[ send_to_user ] = {} - if history not in cannot_change[ send_to_user ]: - cannot_change[ send_to_user ][ history ] = [ hda ] - else: - cannot_change[ send_to_user ][ history ].append( hda ) - return can_change, cannot_change, no_change_needed, unique_no_change_needed, send_to_err - - def _share_histories( self, trans, user, send_to_err, histories=None ): - # histories looks like: { userA: [ historyX, historyY ], userB: [ historyY ] } - histories = histories or {} - msg = "" - sent_to_emails = [] - for send_to_user in histories.keys(): - sent_to_emails.append( send_to_user.email ) - emails = ",".join( e for e in sent_to_emails ) - if not histories: - send_to_err += "No users have been specified or no histories can be sent without changing permissions or associating a sharing role. " - else: - for send_to_user, send_to_user_histories in histories.items(): - shared_histories = [] - for history in send_to_user_histories: - share = trans.app.model.HistoryUserShareAssociation() - share.history = history - share.user = send_to_user - trans.sa_session.add( share ) - self.create_item_slug( trans.sa_session, history ) - trans.sa_session.flush() - if history not in shared_histories: - shared_histories.append( history ) - if send_to_err: - msg += send_to_err - return self.sharing( trans, histories=shared_histories, msg=msg ) - - @web.expose @web.require_login( "rename histories" ) def rename( self, trans, id=None, name=None, **kwd ): user = trans.get_user() @@ -1361,7 +1354,8 @@ name += " (active items only)" new_history = history.copy( name=name, target_user=user ) if len( histories ) == 1: - msg = 'New history "<a href="%s" target="_top">%s</a>" has been created.' % ( url_for( controller="history", action="switch_to_history", hist_id=trans.security.encode_id( new_history.id ) ) , new_history.name ) + switch_url = url_for( controller="history", action="switch_to_history", hist_id=trans.security.encode_id( new_history.id ) ) + msg = 'New history "<a href="%s" target="_top">%s</a>" has been created.' % ( switch_url, new_history.name ) else: msg = 'Copied and created %d new histories.' % len( histories ) return trans.show_ok_message( msg ) diff -r 1861cbcc610da6e519c7760e1c829ec3b66887f4 -r 65ec063664eb0ce100d76d985fba93f200ac5178 lib/galaxy/webapps/galaxy/controllers/root.py --- a/lib/galaxy/webapps/galaxy/controllers/root.py +++ b/lib/galaxy/webapps/galaxy/controllers/root.py @@ -7,20 +7,28 @@ from paste.httpexceptions import HTTPNotFound, HTTPBadGateway +from galaxy.web.base.controller import BaseUIController, UsesHistoryDatasetAssociationMixin, UsesHistoryMixin +from galaxy import managers + from galaxy import web from galaxy.web import url_for from galaxy.model.item_attrs import UsesAnnotations +from galaxy import util from galaxy.util import listify, Params, string_as_bool, string_as_bool_or_none -from galaxy.web.base.controller import BaseUIController, UsesHistoryDatasetAssociationMixin, UsesHistoryMixin from galaxy.util.json import to_json_string -from galaxy.util.debugging import SimpleProfiler - import logging log = logging.getLogger( __name__ ) class RootController( BaseUIController, UsesHistoryMixin, UsesHistoryDatasetAssociationMixin, UsesAnnotations ): - """Controller class that maps to the url root of Galaxy (i.e. '/').""" + """ + Controller class that maps to the url root of Galaxy (i.e. '/'). + """ + def __init__( self, app ): + super( RootController, self ).__init__( app ) + self.mgrs = util.bunch.Bunch( + histories=managers.histories.HistoryManager() + ) @web.expose def default(self, trans, target1=None, target2=None, **kwd): @@ -100,42 +108,6 @@ show_deleted=string_as_bool( show_deleted ), show_hidden=string_as_bool( show_hidden ) ) - def _get_current_history_data( self, trans ): - history_dictionary = {} - hda_dictionaries = [] - - try: - history = trans.get_history( create=True ) - hdas = self.get_history_datasets( trans, history, - show_deleted=True, show_hidden=True, show_purged=True ) - - for hda in hdas: - hda_dict = {} - try: - hda_dict = self.get_hda_dict( trans, hda ) - - except Exception, exc: - # don't fail entire list if hda err's, record and move on - log.error( 'Error bootstrapping hda %d: %s', hda.id, str( exc ), exc_info=True ) - hda_dict = self.get_hda_dict_with_error( trans, hda, str( exc ) ) - - hda_dictionaries.append( hda_dict ) - - # re-use the hdas above to get the history data... - history_dictionary = self.get_history_dict( trans, history, hda_dictionaries=hda_dictionaries ) - - except Exception, exc: - user_id = str( trans.user.id ) if trans.user else '(anonymous)' - log.exception( 'Error bootstrapping history for user %s: %s', user_id, str( exc ) ) - message = ( 'An error occurred getting the history data from the server. ' - + 'Please contact a Galaxy administrator if the problem persists.' ) - history_dictionary[ 'error' ] = message - - return { - 'history' : history_dictionary, - 'hdas' : hda_dictionaries - } - @web.expose def history( self, trans, as_xml=False, show_deleted=None, show_hidden=None, **kwd ): """ @@ -154,11 +126,11 @@ show_hidden = string_as_bool_or_none( show_hidden ) history_dictionary = {} - hda_dictionaries = [] + hda_dictionaries = [] try: - history_data = self._get_current_history_data( trans ) + history_data = self.mgrs.histories._get_history_data( trans, trans.get_history( create=True ) ) history_dictionary = history_data[ 'history' ] - hda_dictionaries = history_data[ 'hdas' ] + hda_dictionaries = history_data[ 'contents' ] except Exception, exc: user_id = str( trans.user.id ) if trans.user else '(anonymous)' @@ -170,6 +142,7 @@ history = history_dictionary, hdas = hda_dictionaries, show_deleted=show_deleted, show_hidden=show_hidden ) + ## ---- Dataset display / editing ---------------------------------------- @web.expose def display( self, trans, id=None, hid=None, tofile=None, toext=".txt", encoded_id=None, **kwd ): Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: jmchilton: Fix bug related to undefined attribute error in workflow editor.
by commits-noreply＠bitbucket.org 09 Jul '14

09 Jul '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/1861cbcc610d/ Changeset: 1861cbcc610d User: jmchilton Date: 2014-07-10 00:39:00 Summary: Fix bug related to undefined attribute error in workflow editor. Affected #: 1 file diff -r 5e74f91d068bedde58cf4ec9d8299bd05fdff697 -r 1861cbcc610da6e519c7760e1c829ec3b66887f4 static/scripts/galaxy.workflow_editor.canvas.js --- a/static/scripts/galaxy.workflow_editor.canvas.js +++ b/static/scripts/galaxy.workflow_editor.canvas.js @@ -306,7 +306,7 @@ inputFilled = false; } else { var firstOutput = this.connectors[ 0 ].handle1; - if( firstOutput === null ){ + if( ! firstOutput ){ inputFilled = false; } else { if( firstOutput.isDataCollectionInput || firstOutput.isMappedOver() || firstOutput.datatypes.indexOf( "input_collection" ) > 0 ) { Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: jgoecks: Remove debugging statement.
by commits-noreply＠bitbucket.org 09 Jul '14

09 Jul '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/5e74f91d068b/ Changeset: 5e74f91d068b User: jgoecks Date: 2014-07-09 22:36:47 Summary: Remove debugging statement. Affected #: 1 file diff -r 64d51b16a55173bfec78dc22ee802d3e085dd4fc -r 5e74f91d068bedde58cf4ec9d8299bd05fdff697 static/scripts/mvc/ui/ui-frames.js --- a/static/scripts/mvc/ui/ui-frames.js +++ b/static/scripts/mvc/ui/ui-frames.js @@ -196,7 +196,6 @@ // Load content into frame. var content_elt = $frame_el.find('.f-content'); - console.log(content_elt); if (_.isFunction(options.content)) { options.content(content_elt); } Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: davebgx: Fix test_history_functions test 80, copying history items.
by commits-noreply＠bitbucket.org 09 Jul '14

09 Jul '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/64d51b16a551/ Changeset: 64d51b16a551 User: davebgx Date: 2014-07-09 22:11:50 Summary: Fix test_history_functions test 80, copying history items. Affected #: 2 files diff -r 50a273de6cd76b770eb78861fee2b0a97621fa3b -r 64d51b16a55173bfec78dc22ee802d3e085dd4fc test/base/twilltestcase.py --- a/test/base/twilltestcase.py +++ b/test/base/twilltestcase.py @@ -506,13 +506,13 @@ self.check_page_for_string( 'The file conversion of Convert BED to GFF on data' ) self.wait() # wait for the format convert tool to finish before returning - def copy_history_item( self, source_dataset_id=None, target_history_id=None, all_target_history_ids=[], + def copy_history_item( self, source_history_id=None, source_dataset_id=None, target_history_id=None, all_target_history_ids=[], deleted_history_ids=[] ): """ Copy 1 history_dataset_association to 1 history (Limited by twill since it doesn't support multiple field names, such as checkboxes """ - self.visit_url( "%s/dataset/copy_datasets?source_dataset_ids=%s" % ( self.url, source_dataset_id ) ) + self.visit_url( "/dataset/copy_datasets" ) self.check_page_for_string( 'Source History:' ) # Make sure all of users active histories are displayed for id in all_target_history_ids: @@ -524,9 +524,11 @@ raise AssertionError( "deleted history id %d displayed in list of target histories" % id ) except: pass - - tc.fv( '1', 'target_history_id', target_history_id ) - tc.submit( 'do_copy' ) + form_values = [ ( 'source_history', source_history_id ), + ( 'target_history_id', target_history_id ), + ( 'source_content_ids', 'dataset|%s' % source_dataset_id ), + ( 'do_copy', True ) ] + self.visit_url( "/dataset/copy_datasets", params=form_values ) check_str = '1 dataset copied to 1 history' self.check_page_for_string( check_str ) diff -r 50a273de6cd76b770eb78861fee2b0a97621fa3b -r 64d51b16a55173bfec78dc22ee802d3e085dd4fc test/functional/test_history_functions.py --- a/test/functional/test_history_functions.py +++ b/test/functional/test_history_functions.py @@ -831,7 +831,8 @@ deleted_history_ids = [ self.security.encode_id( history1.id ), self.security.encode_id( history2.id ) ] # Test copying to the current history target_history_id = self.security.encode_id( history6.id ) - self.copy_history_item( source_dataset_id=source_dataset_ids, + self.copy_history_item( source_history_id=self.security.encode_id( history6.id ), + source_dataset_id=source_dataset_ids, target_history_id=target_history_id, all_target_history_ids=all_target_history_ids, deleted_history_ids=deleted_history_ids ) @@ -852,7 +853,8 @@ all_target_history_ids = [ self.security.encode_id( hda.id ) for hda in admin_user.active_histories ] # Test copying to the a history that is not the current history self.security.encode_id( history7.id ) - self.copy_history_item( source_dataset_id=source_dataset_ids, + self.copy_history_item( source_history_id=self.security.encode_id( history6.id ), + source_dataset_id=source_dataset_ids, target_history_id=target_history_id, all_target_history_ids=all_target_history_ids, deleted_history_ids=deleted_history_ids ) Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: carlfeberhard: History panel: refactoring for dataset collections
by commits-noreply＠bitbucket.org 09 Jul '14

09 Jul '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/50a273de6cd7/ Changeset: 50a273de6cd7 User: carlfeberhard Date: 2014-07-09 19:40:43 Summary: History panel: refactoring for dataset collections Affected #: 17 files diff -r 83a3792548db71c8bf69e278bf745bc5df123db7 -r 50a273de6cd76b770eb78861fee2b0a97621fa3b static/scripts/mvc/collection/hdca-model.js --- /dev/null +++ b/static/scripts/mvc/collection/hdca-model.js @@ -0,0 +1,69 @@ +define([ + "mvc/history/history-content-base", + "utils/localization" +], function( historyContent, _l ){ +//============================================================================== +var HistoryDatasetCollectionAssociation = historyContent.HistoryContent.extend( +/** @lends HistoryDatasetCollectionAssociation.prototype */{ + /** default attributes for a model */ + defaults : { + // parent (containing) history + history_id : null, + // often used with tagging + model_class : 'HistoryDatasetCollectionAssociation', + history_content_type : 'dataset_collection', + hid : 0, + + id : null, + name : '(unnamed dataset collection)', + // one of HistoryDatasetAssociation.STATES, calling them all 'ok' for now. + state : 'ok', + + accessible : true, + deleted : false, + visible : true, + + purged : false, // Purged doesn't make sense for collections - at least right now. + + tags : [], + annotation : '' + }, + urls : function(){ + }, + + inReadyState : function(){ + return true; // TODO + }, + + // ........................................................................ search + /** what attributes of an collection will be used in a text search */ + searchAttributes : [ + 'name' + ], + + /** our attr keys don't often match the labels we display to the user - so, when using + * attribute specifiers ('name="bler"') in a term, allow passing in aliases for the + * following attr keys. + */ + searchAliases : { + title : 'name' + // TODO: Add tag... + }, + + // ........................................................................ misc + /** String representation */ + toString : function(){ + var nameAndId = this.get( 'id' ) || ''; + if( this.get( 'name' ) ){ + nameAndId = this.get( 'hid' ) + ' :"' + this.get( 'name' ) + '",' + nameAndId; + } + return 'HDCA-' + this.get( 'collection_type' ) + '(' + nameAndId + ')'; + } +}); + + +//============================================================================== + return { + HistoryDatasetCollectionAssociation : HistoryDatasetCollectionAssociation + }; +}); diff -r 83a3792548db71c8bf69e278bf745bc5df123db7 -r 50a273de6cd76b770eb78861fee2b0a97621fa3b static/scripts/mvc/dataset/hda-model.js --- a/static/scripts/mvc/dataset/hda-model.js +++ b/static/scripts/mvc/dataset/hda-model.js @@ -1,169 +1,7 @@ define([ - "mvc/base-mvc", + "mvc/history/history-content-base", "utils/localization" -], function( baseMVC, _l ){ -//============================================================================== -/** @class model for contents related to a history. - * @name HistoryContent - * - * @augments Backbone.Model - * @borrows LoggableMixin#logger as #logger - * @borrows LoggableMixin#log as #log - * @constructs - */ -var HistoryContent = Backbone.Model.extend( baseMVC.LoggableMixin ).extend( { - idAttribute : 'type_id', - - /** fetch location of this HDA's history in the api */ - urlRoot: galaxy_config.root + 'api/histories/', - - constructor : function( attrs, options ){ - attrs.type_id = HistoryContent.typeIdStr( attrs.history_content_type, attrs.id ); - Backbone.Model.apply( this, arguments ); - }, - - initialize : function( attrs, options ){ - // assumes type won't change - this.on( 'change:id', this._createTypeId ); - //TODO: not sure this covers all the bases... - }, - - /** full url spec. for this HDA */ - url : function(){ - return this.urlRoot + this.get( 'history_id' ) + '/contents/' + this.get('history_content_type') + 's/' + this.get( 'id' ); - }, - - /** the more common alias of visible */ - hidden : function(){ - return !this.get( 'visible' ); - }, - - // ........................................................................ ajax - - /** save this HDA, _Mark_ing it as deleted (just a flag) */ - 'delete' : function _delete( options ){ - if( this.get( 'deleted' ) ){ return jQuery.when(); } - return this.save( { deleted: true }, options ); - }, - /** save this HDA, _Mark_ing it as undeleted */ - undelete : function _undelete( options ){ - if( !this.get( 'deleted' ) || this.get( 'purged' ) ){ return jQuery.when(); } - return this.save( { deleted: false }, options ); - }, - - /** save this HDA as not visible */ - hide : function _hide( options ){ - if( !this.get( 'visible' ) ){ return jQuery.when(); } - return this.save( { visible: false }, options ); - }, - /** save this HDA as visible */ - unhide : function _uhide( options ){ - if( this.get( 'visible' ) ){ return jQuery.when(); } - return this.save( { visible: true }, options ); - }, - - /** based on show_deleted, show_hidden (gen. from the container control), - * would this ds show in the list of ds's? - * @param {Boolean} show_deleted are we showing deleted hdas? - * @param {Boolean} show_hidden are we showing hidden hdas? - */ - isVisible : function( show_deleted, show_hidden ){ - var isVisible = true; - if( ( !show_deleted ) - && ( this.get( 'deleted' ) || this.get( 'purged' ) ) ){ - isVisible = false; - } - if( ( !show_hidden ) - && ( !this.get( 'visible' ) ) ){ - isVisible = false; - } - return isVisible; - }, - - /** search the attribute with key attrKey for the string searchFor; T/F if found */ - searchAttribute : function( attrKey, searchFor ){ - var attrVal = this.get( attrKey ); - //console.debug( 'searchAttribute', attrKey, attrVal, searchFor ); - // bail if empty searchFor or unsearchable values - if( !searchFor - || ( attrVal === undefined || attrVal === null ) ){ - return false; - } - // pass to sep. fn for deep search of array attributes - if( _.isArray( attrVal ) ){ return this._searchArrayAttribute( attrVal, searchFor ); } - return ( attrVal.toString().toLowerCase().indexOf( searchFor.toLowerCase() ) !== -1 ); - }, - - /** deep(er) search for array attributes; T/F if found */ - _searchArrayAttribute : function( array, searchFor ){ - //console.debug( '_searchArrayAttribute', array, searchFor ); - searchFor = searchFor.toLowerCase(); - //precondition: searchFor has already been validated as non-empty string - //precondition: assumes only 1 level array - //TODO: could possibly break up searchFor more (CSV...) - return _.any( array, function( elem ){ - return ( elem.toString().toLowerCase().indexOf( searchFor.toLowerCase() ) !== -1 ); - }); - }, - - /** search all searchAttributes for the string searchFor, - * returning a list of keys of attributes that contain searchFor - */ - search : function( searchFor ){ - var model = this; - return _.filter( this.searchAttributes, function( key ){ - return model.searchAttribute( key, searchFor ); - }); - }, - - /** alias of search, but returns a boolean; accepts attribute specifiers where - * the attributes searched can be narrowed to a single attribute using - * the form: matches( 'genome_build=hg19' ) - * (the attribute keys allowed can also be aliases to the true attribute key; - * see searchAliases above) - * @param {String} term plain text or ATTR_SPECIFIER sep. key=val pair - * @returns {Boolean} was term found in (any) attribute(s) - */ - matches : function( term ){ - var ATTR_SPECIFIER = '=', - split = term.split( ATTR_SPECIFIER ); - // attribute is specified - search only that - if( split.length >= 2 ){ - var attrKey = split[0]; - attrKey = this.searchAliases[ attrKey ] || attrKey; - return this.searchAttribute( attrKey, split[1] ); - } - // no attribute is specified - search all attributes in searchAttributes - return !!this.search( term ).length; - }, - - /** an implicit AND search for all terms; IOW, an hda must match all terms given - * where terms is a whitespace separated value string. - * e.g. given terms of: 'blah bler database=hg19' - * an HDA would have to have attributes containing blah AND bler AND a genome_build == hg19 - * To include whitespace in terms: wrap the term in double quotations. - */ - matchesAll : function( terms ){ - var model = this; - // break the terms up by whitespace and filter out the empty strings - terms = terms.match( /(".*"|\w*=".*"|\S*)/g ).filter( function( s ){ return !!s; }); - return _.all( terms, function( term ){ - term = term.replace( /"/g, '' ); - return model.matches( term ); - }); - }, - - _createTypeId : function(){ - this.set( 'type_id', TypeIdModel.typeIdStr( this.get( 'history_content_type' ), this.get( 'id' ) ) ); - }, - -} ); - -/** create a type + id string for use in mixed collections */ -HistoryContent.typeIdStr = function _typeId( type, id ){ - return [ type, id ].join( '-' ); -}; - +], function( historyContent, _l ){ //============================================================================== /** @class (HDA) model for a Galaxy dataset * related to a history. @@ -174,7 +12,7 @@ * @borrows LoggableMixin#log as #log * @constructs */ -var HistoryDatasetAssociation = HistoryContent.extend( +var HistoryDatasetAssociation = historyContent.HistoryContent.extend( /** @lends HistoryDatasetAssociation.prototype */{ ///** logger used to record this.log messages, commonly set to console */ @@ -456,326 +294,9 @@ HistoryDatasetAssociation.STATES.NEW ]; -//============================================================================== -/** @class Backbone collection of (HDA) models - * TODO: Rename HistoryContentCollection - * - * @borrows LoggableMixin#logger as #logger - * @borrows LoggableMixin#log as #log - * @constructs - */ -var HDACollection = Backbone.Collection.extend( baseMVC.LoggableMixin ).extend( -/** @lends HDACollection.prototype */{ - model : function( attrs, options ) { - if( attrs.history_content_type == "dataset" ) { - return new HistoryDatasetAssociation( attrs, options ); - } else if( attrs.history_content_type == "dataset_collection" ) { - return new HistoryDatasetCollectionAssociation( attrs, options ); - } else { - // TODO: Handle unknown history_content_type... - } - }, - - ///** logger used to record this.log messages, commonly set to console */ - //// comment this out to suppress log output - //logger : console, - - /** root api url */ - urlRoot : galaxy_config.root + 'api/histories', - /** complete api url */ - url : function(){ - return this.urlRoot + '/' + this.historyId + '/contents'; - }, - - /** Set up. - * @see Backbone.Collection#initialize - */ - initialize : function( models, options ){ - options = options || {}; - this.historyId = options.historyId; - //this._setUpListeners(); - }, - - //_setUpListeners : function(){ - //}, - - // ........................................................................ common queries - /** Get the ids of every hda in this collection - * @returns array of encoded ids - */ - ids : function(){ - return this.map( function( hda ){ return hda.get('id'); }); - }, - - /** Get hdas that are not ready - * @returns array of HDAs - */ - notReady : function(){ - return this.filter( function( hda ){ - return !hda.inReadyState(); - }); - }, - - /** Get the id of every hda in this collection not in a 'ready' state (running). - * @returns an array of hda ids - * @see HistoryDatasetAssociation#inReadyState - */ - running : function(){ - var idList = []; - this.each( function( item ){ - if( !item.inReadyState() ){ - idList.push( item.get( 'id' ) ); - } - }); - return idList; - }, - - /** Get the hda with the given hid - * @param {Int} hid the hid to search for - * @returns {HistoryDatasetAssociation} the hda with the given hid or undefined if not found - */ - getByHid : function( hid ){ - return _.first( this.filter( function( hda ){ return hda.get( 'hid' ) === hid; }) ); - }, - - /** Get every 'shown' hda in this collection based on show_deleted/hidden - * @param {Boolean} show_deleted are we showing deleted hdas? - * @param {Boolean} show_hidden are we showing hidden hdas? - * @returns array of hda models - * @see HistoryDatasetAssociation#isVisible - */ - getVisible : function( show_deleted, show_hidden, filters ){ - filters = filters || []; - //console.debug( 'filters:', filters ); - //TODO:?? why doesn't this return a collection? - // always filter by show deleted/hidden first - var filteredHdas = new HDACollection( this.filter( function( item ){ - return item.isVisible( show_deleted, show_hidden ); - })); - - _.each( filters, function( filter_fn ){ - if( !_.isFunction( filter_fn ) ){ return; } - filteredHdas = new HDACollection( filteredHdas.filter( filter_fn ) ); - }); - //if( filteredHdas.length ){ - // console.debug( 'filteredHdas:' ); - // filteredHdas.each( function( hda ){ - // console.debug( '\t', hda ); - // }); - //} else { - // console.warn( 'no visible hdas' ); - //} - return filteredHdas; - }, - - /** return true if any hdas don't have details */ - haveDetails : function(){ - return this.all( function( hda ){ return hda.hasDetails(); }); - }, - - // ........................................................................ ajax - /** fetch detailed model data for all HDAs in this collection */ - fetchAllDetails : function( options ){ - options = options || {}; - var detailsFlag = { details: 'all' }; - options.data = ( options.data )?( _.extend( options.data, detailsFlag ) ):( detailsFlag ); - return this.fetch( options ); - }, - - /** using a queue, perform hdaModelAjaxFn on each of the hdas in this collection */ - ajaxQueue : function( hdaAjaxFn, options ){ - var deferred = jQuery.Deferred(), - startingLength = this.length, - responses = []; - - if( !startingLength ){ - deferred.resolve([]); - return deferred; - } - - // use reverse order (stylistic choice) - var ajaxFns = this.chain().reverse().map( function( hda, i ){ - return function(){ - var xhr = hdaAjaxFn.call( hda, options ); - // if successful, notify using the deferred to allow tracking progress - xhr.done( function( response ){ - deferred.notify({ curr: i, total: startingLength, response: response, model: hda }); - }); - // (regardless of previous error or success) if not last ajax call, shift and call the next - // if last fn, resolve deferred - xhr.always( function( response ){ - responses.push( response ); - if( ajaxFns.length ){ - ajaxFns.shift()(); - } else { - deferred.resolve( responses ); - } - }); - }; - }).value(); - // start the queue - ajaxFns.shift()(); - - return deferred; - }, - - // ........................................................................ sorting/filtering - /** return a new collection of HDAs whose attributes contain the substring matchesWhat */ - matches : function( matchesWhat ){ - return this.filter( function( hda ){ - return hda.matches( matchesWhat ); - }); - }, - - // ........................................................................ misc - set : function( models, options ){ - // arrrrrrrrrrrrrrrrrg... - // override to get a correct/smarter merge when incoming data is partial (e.g. stupid backbone) - // w/o this partial models from the server will fill in missing data with model defaults - // and overwrite existing data on the client - // see Backbone.Collection.set and _prepareModel - var collection = this; - models = _.map( models, function( model ){ - var attrs = model.attributes || model; // Handle raw json or Backbone model. - var typeId = HistoryContent.typeIdStr( attrs.history_content_type, attrs.id ); - var existing = collection.get( typeId ); - if( !existing ){ return model; } - - // merge the models _BEFORE_ calling the superclass version - var merged = existing.toJSON(); - _.extend( merged, model ); - return merged; - }); - // now call superclass when the data is filled - Backbone.Collection.prototype.set.call( this, models, options ); - }, - - /** Convert this ad-hoc collection of HDAs to a formal collection tracked - by the server. - **/ - promoteToHistoryDatasetCollection : function _promote( history, collection_type, options ){ - options = options || {}; - options.url = this.url(); - options.type = "POST"; - var full_collection_type = collection_type; - var element_identifiers = [], - name = null; - - // This mechanism is rough - no error handling, allows invalid selections, no way - // for user to pick/override element identifiers. This is only really meant - if( collection_type == "list" ) { - this.chain().each( function( hda ) { - // TODO: Handle duplicate names. - var name = hda.attributes.name; - var id = hda.get('id'); - var content_type = hda.attributes.history_content_type; - if( content_type == "dataset" ) { - if( full_collection_type != "list" ) { - console.log( "Invalid collection type" ); - } - element_identifiers.push( { name: name, src: "hda", id: id } ); - } else { - if( full_collection_type == "list" ) { - full_collection_type = "list:" + hda.attributes.collection_type; - } else { - if( full_collection_type != "list:" + hda.attributes.collection_type ) { - console.log( "Invalid collection type" ); - } - } - element_identifiers.push( { name: name, src: "hdca", id: id } ); - } - }); - name = "New Dataset List"; - } else if( collection_type == "paired" ) { - var ids = this.ids(); - if( ids.length != 2 ){ - // TODO: Do something... - } - element_identifiers.push( { name: "forward", src: "hda", id: ids[ 0 ] } ); - element_identifiers.push( { name: "reverse", src: "hda", id: ids[ 1 ] } ); - name = "New Dataset Pair"; - } - options.data = {type: "dataset_collection", - name: name, - collection_type: full_collection_type, - element_identifiers: JSON.stringify(element_identifiers), - }; - - var xhr = jQuery.ajax( options ); - xhr.done( function( message, status, responseObj ){ - history.refresh( ); - }); - xhr.fail( function( xhr, status, message ){ - if( xhr.responseJSON && xhr.responseJSON.error ){ - error = xhr.responseJSON.error; - } else { - error = xhr.responseJSON; - } - xhr.responseText = error; - // Do something? - }); - return xhr; - }, - - /** String representation. */ - toString : function(){ - return ([ 'HDACollection(', [ this.historyId, this.length ].join(), ')' ].join( '' )); - } -}); - -var HistoryDatasetCollectionAssociation = HistoryContent.extend( -/** @lends HistoryDatasetCollectionAssociation.prototype */{ - /** default attributes for a model */ - defaults : { - // parent (containing) history - history_id : null, - // often used with tagging - model_class : 'HistoryDatasetCollectionAssociation', - history_content_type : 'dataset_collection', - hid : 0, - - id : null, - name : '(unnamed dataset collection)', - // one of HistoryDatasetAssociation.STATES, calling them all 'ok' for now. - state : 'ok', - - accessible : true, - deleted : false, - visible : true, - - purged : false, // Purged doesn't make sense for collections - at least right now. - - tags : [], - annotation : '' - }, - urls : function(){ - }, - - inReadyState : function(){ - return true; // TODO - }, - - // ........................................................................ search - /** what attributes of an collection will be used in a text search */ - searchAttributes : [ - 'name' - ], - - /** our attr keys don't often match the labels we display to the user - so, when using - * attribute specifiers ('name="bler"') in a term, allow passing in aliases for the - * following attr keys. - */ - searchAliases : { - title : 'name' - // TODO: Add tag... - }, - -}); - - //============================================================================== -return { - HistoryDatasetAssociation : HistoryDatasetAssociation, - HDACollection : HDACollection -};}); + return { + HistoryDatasetAssociation : HistoryDatasetAssociation + }; +}); diff -r 83a3792548db71c8bf69e278bf745bc5df123db7 -r 50a273de6cd76b770eb78861fee2b0a97621fa3b static/scripts/mvc/history/current-history-panel.js --- a/static/scripts/mvc/history/current-history-panel.js +++ b/static/scripts/mvc/history/current-history-panel.js @@ -53,7 +53,7 @@ noneFoundMsg : _l( "No matching datasets found" ), // ......................................................................... SET UP - /** Set up the view, set up storage, bind listeners to HDACollection events + /** Set up the view, set up storage, bind listeners to HistoryContents events * @param {Object} attributes */ initialize : function( attributes ){ diff -r 83a3792548db71c8bf69e278bf745bc5df123db7 -r 50a273de6cd76b770eb78861fee2b0a97621fa3b static/scripts/mvc/history/history-content-base.js --- /dev/null +++ b/static/scripts/mvc/history/history-content-base.js @@ -0,0 +1,181 @@ +define([ + "mvc/base-mvc", + "utils/localization" +], function( baseMVC, _l ){ +//============================================================================== +/** @class base model for content items contained in a history or hdca. + * @name HistoryContent + * + * @augments Backbone.Model + * @borrows LoggableMixin#logger as #logger + * @borrows LoggableMixin#log as #log + * @constructs + */ +var HistoryContent = Backbone.Model.extend( baseMVC.LoggableMixin ).extend( { + idAttribute : 'type_id', + + constructor : function( attrs, options ){ + attrs.type_id = HistoryContent.typeIdStr( attrs.history_content_type, attrs.id ); + Backbone.Model.apply( this, arguments ); + }, + + initialize : function( attrs, options ){ + // assumes type won't change + this.on( 'change:id', this._createTypeId ); + //TODO: not sure this covers all the bases... + }, + _createTypeId : function(){ + this.set( 'type_id', TypeIdModel.typeIdStr( this.get( 'history_content_type' ), this.get( 'id' ) ) ); + }, + + // ........................................................................ common queries + /** the more common alias of visible */ + hidden : function(){ + return !this.get( 'visible' ); + }, + + /** based on show_deleted, show_hidden (gen. from the container control), + * would this ds show in the list of ds's? + * @param {Boolean} show_deleted are we showing deleted hdas? + * @param {Boolean} show_hidden are we showing hidden hdas? + */ + isVisible : function( show_deleted, show_hidden ){ + var isVisible = true; + if( ( !show_deleted ) + && ( this.get( 'deleted' ) || this.get( 'purged' ) ) ){ + isVisible = false; + } + if( ( !show_hidden ) + && ( !this.get( 'visible' ) ) ){ + isVisible = false; + } + return isVisible; + }, + + // ........................................................................ ajax + /** */ + urlRoot: galaxy_config.root + 'api/histories/', + + /** full url spec. for this HDA */ + url : function(){ + return this.urlRoot + this.get( 'history_id' ) + '/contents/' + + this.get('history_content_type') + 's/' + this.get( 'id' ); + }, + + /** save this HDA, _Mark_ing it as deleted (just a flag) */ + 'delete' : function _delete( options ){ + if( this.get( 'deleted' ) ){ return jQuery.when(); } + return this.save( { deleted: true }, options ); + }, + /** save this HDA, _Mark_ing it as undeleted */ + undelete : function _undelete( options ){ + if( !this.get( 'deleted' ) || this.get( 'purged' ) ){ return jQuery.when(); } + return this.save( { deleted: false }, options ); + }, + + /** save this HDA as not visible */ + hide : function _hide( options ){ + if( !this.get( 'visible' ) ){ return jQuery.when(); } + return this.save( { visible: false }, options ); + }, + /** save this HDA as visible */ + unhide : function _uhide( options ){ + if( this.get( 'visible' ) ){ return jQuery.when(); } + return this.save( { visible: true }, options ); + }, + + // ........................................................................ searching + /** search the attribute with key attrKey for the string searchFor; T/F if found */ + searchAttribute : function( attrKey, searchFor ){ + var attrVal = this.get( attrKey ); + //console.debug( 'searchAttribute', attrKey, attrVal, searchFor ); + // bail if empty searchFor or unsearchable values + if( !searchFor + || ( attrVal === undefined || attrVal === null ) ){ + return false; + } + // pass to sep. fn for deep search of array attributes + if( _.isArray( attrVal ) ){ return this._searchArrayAttribute( attrVal, searchFor ); } + return ( attrVal.toString().toLowerCase().indexOf( searchFor.toLowerCase() ) !== -1 ); + }, + + /** deep(er) search for array attributes; T/F if found */ + _searchArrayAttribute : function( array, searchFor ){ + //console.debug( '_searchArrayAttribute', array, searchFor ); + searchFor = searchFor.toLowerCase(); + //precondition: searchFor has already been validated as non-empty string + //precondition: assumes only 1 level array + //TODO: could possibly break up searchFor more (CSV...) + return _.any( array, function( elem ){ + return ( elem.toString().toLowerCase().indexOf( searchFor.toLowerCase() ) !== -1 ); + }); + }, + + /** search all searchAttributes for the string searchFor, + * returning a list of keys of attributes that contain searchFor + */ + search : function( searchFor ){ + var model = this; + return _.filter( this.searchAttributes, function( key ){ + return model.searchAttribute( key, searchFor ); + }); + }, + + /** alias of search, but returns a boolean; accepts attribute specifiers where + * the attributes searched can be narrowed to a single attribute using + * the form: matches( 'genome_build=hg19' ) + * (the attribute keys allowed can also be aliases to the true attribute key; + * see searchAliases above) + * @param {String} term plain text or ATTR_SPECIFIER sep. key=val pair + * @returns {Boolean} was term found in (any) attribute(s) + */ + matches : function( term ){ + var ATTR_SPECIFIER = '=', + split = term.split( ATTR_SPECIFIER ); + // attribute is specified - search only that + if( split.length >= 2 ){ + var attrKey = split[0]; + attrKey = this.searchAliases[ attrKey ] || attrKey; + return this.searchAttribute( attrKey, split[1] ); + } + // no attribute is specified - search all attributes in searchAttributes + return !!this.search( term ).length; + }, + + /** an implicit AND search for all terms; IOW, an hda must match all terms given + * where terms is a whitespace separated value string. + * e.g. given terms of: 'blah bler database=hg19' + * an HDA would have to have attributes containing blah AND bler AND a genome_build == hg19 + * To include whitespace in terms: wrap the term in double quotations. + */ + matchesAll : function( terms ){ + var model = this; + // break the terms up by whitespace and filter out the empty strings + terms = terms.match( /(".*"|\w*=".*"|\S*)/g ).filter( function( s ){ return !!s; }); + return _.all( terms, function( term ){ + term = term.replace( /"/g, '' ); + return model.matches( term ); + }); + }, + + // ........................................................................ misc + /** String representation */ + toString : function(){ + var nameAndId = this.get( 'id' ) || ''; + if( this.get( 'name' ) ){ + nameAndId = this.get( 'hid' ) + ' :"' + this.get( 'name' ) + '",' + nameAndId; + } + return 'HistoryContent(' + nameAndId + ')'; + } +}); + +/** create a type + id string for use in mixed collections */ +HistoryContent.typeIdStr = function _typeId( type, id ){ + return [ type, id ].join( '-' ); +}; + + +//============================================================================== +return { + HistoryContent : HistoryContent +};}); diff -r 83a3792548db71c8bf69e278bf745bc5df123db7 -r 50a273de6cd76b770eb78861fee2b0a97621fa3b static/scripts/mvc/history/history-contents.js --- /dev/null +++ b/static/scripts/mvc/history/history-contents.js @@ -0,0 +1,277 @@ +define([ + "mvc/history/history-content-base", + "mvc/dataset/hda-model", + "mvc/collection/hdca-model", + "mvc/base-mvc", + "utils/localization" +], function( historyContent, hdaModel, hdcaModel, baseMVC, _l ){ +//============================================================================== +/** @class Backbone collection for history content. + * NOTE: history content seems like a dataset collection, but differs in that it is mixed: + * each element can be either an HDA (dataset) or a DatasetCollection and co-exist on + * the same level. + * Dataset collections on the other hand are not mixed and (so far) can only contain either + * HDAs or child dataset collections on one level. + * This is why this does not inherit from any of the DatasetCollections (currently). + * + * @borrows LoggableMixin#logger as #logger + * @borrows LoggableMixin#log as #log + * @constructs + */ +var HistoryContents = Backbone.Collection.extend( baseMVC.LoggableMixin ).extend( +/** @lends HistoryContents.prototype */{ + + ///** logger used to record this.log messages, commonly set to console */ + //// comment this out to suppress log output + //logger : console, + + /** since history content is a mix, override model fn into a factory, creating based on history_content_type */ + model : function( attrs, options ) { + if( attrs.history_content_type === "dataset" ) { + return new hdaModel.HistoryDatasetAssociation( attrs, options ); + } else if( attrs.history_content_type === "dataset_collection" ) { + return new hdcaModel.HistoryDatasetCollectionAssociation( attrs, options ); + } + // TODO: Handle unknown history_content_type... + throw new TypeError( 'Unknown history_content_type:' + attrs.history_content_type ); + }, + + /** Set up. + * @see Backbone.Collection#initialize + */ + initialize : function( models, options ){ + options = options || {}; + this.historyId = options.historyId; + //this._setUpListeners(); + }, + + /** root api url */ + urlRoot : galaxy_config.root + 'api/histories', + /** complete api url */ + url : function(){ + return this.urlRoot + '/' + this.historyId + '/contents'; + }, + + // ........................................................................ common queries + /** Get the ids of every hda in this collection + * @returns array of encoded ids + */ + ids : function(){ + return this.map( function( hda ){ return hda.get('id'); }); + }, + + /** Get hdas that are not ready + * @returns array of HDAs + */ + notReady : function(){ + return this.filter( function( hda ){ + return !hda.inReadyState(); + }); + }, + + /** Get the id of every hda in this collection not in a 'ready' state (running). + * @returns an array of hda ids + * @see HistoryDatasetAssociation#inReadyState + */ + running : function(){ + var idList = []; + this.each( function( item ){ + if( !item.inReadyState() ){ + idList.push( item.get( 'id' ) ); + } + }); + return idList; + }, + + /** Get the hda with the given hid + * @param {Int} hid the hid to search for + * @returns {HistoryDatasetAssociation} the hda with the given hid or undefined if not found + */ + getByHid : function( hid ){ + return _.first( this.filter( function( hda ){ return hda.get( 'hid' ) === hid; }) ); + }, + + /** Get every 'shown' hda in this collection based on show_deleted/hidden + * @param {Boolean} show_deleted are we showing deleted hdas? + * @param {Boolean} show_hidden are we showing hidden hdas? + * @returns array of hda models + * @see HistoryDatasetAssociation#isVisible + */ + getVisible : function( show_deleted, show_hidden, filters ){ + filters = filters || []; + //console.debug( 'filters:', filters ); + //TODO:?? why doesn't this return a collection? + // always filter by show deleted/hidden first + var filteredHdas = new HistoryContents( this.filter( function( item ){ + return item.isVisible( show_deleted, show_hidden ); + })); + + _.each( filters, function( filter_fn ){ + if( !_.isFunction( filter_fn ) ){ return; } + filteredHdas = new HistoryContents( filteredHdas.filter( filter_fn ) ); + }); + return filteredHdas; + }, + + /** return true if any hdas don't have details */ + haveDetails : function(){ + return this.all( function( hda ){ return hda.hasDetails(); }); + }, + + // ........................................................................ ajax + /** fetch detailed model data for all HDAs in this collection */ + fetchAllDetails : function( options ){ + options = options || {}; + var detailsFlag = { details: 'all' }; + options.data = ( options.data )?( _.extend( options.data, detailsFlag ) ):( detailsFlag ); + return this.fetch( options ); + }, + + /** using a queue, perform hdaModelAjaxFn on each of the hdas in this collection */ + ajaxQueue : function( hdaAjaxFn, options ){ + var deferred = jQuery.Deferred(), + startingLength = this.length, + responses = []; + + if( !startingLength ){ + deferred.resolve([]); + return deferred; + } + + // use reverse order (stylistic choice) + var ajaxFns = this.chain().reverse().map( function( hda, i ){ + return function(){ + var xhr = hdaAjaxFn.call( hda, options ); + // if successful, notify using the deferred to allow tracking progress + xhr.done( function( response ){ + deferred.notify({ curr: i, total: startingLength, response: response, model: hda }); + }); + // (regardless of previous error or success) if not last ajax call, shift and call the next + // if last fn, resolve deferred + xhr.always( function( response ){ + responses.push( response ); + if( ajaxFns.length ){ + ajaxFns.shift()(); + } else { + deferred.resolve( responses ); + } + }); + }; + }).value(); + // start the queue + ajaxFns.shift()(); + + return deferred; + }, + + // ........................................................................ sorting/filtering + /** return a new collection of HDAs whose attributes contain the substring matchesWhat */ + matches : function( matchesWhat ){ + return this.filter( function( hda ){ + return hda.matches( matchesWhat ); + }); + }, + + // ........................................................................ misc + set : function( models, options ){ + // arrrrrrrrrrrrrrrrrg... + // override to get a correct/smarter merge when incoming data is partial (e.g. stupid backbone) + // w/o this partial models from the server will fill in missing data with model defaults + // and overwrite existing data on the client + // see Backbone.Collection.set and _prepareModel + var collection = this; + models = _.map( models, function( model ){ + var attrs = model.attributes || model; // Handle raw json or Backbone model. + var typeId = historyContent.HistoryContent.typeIdStr( attrs.history_content_type, attrs.id ); + var existing = collection.get( typeId ); + if( !existing ){ return model; } + + // merge the models _BEFORE_ calling the superclass version + var merged = existing.toJSON(); + _.extend( merged, model ); + return merged; + }); + // now call superclass when the data is filled + Backbone.Collection.prototype.set.call( this, models, options ); + }, + + /** Convert this ad-hoc collection of HDAs to a formal collection tracked + by the server. + **/ + promoteToHistoryDatasetCollection : function _promote( history, collection_type, options ){ + options = options || {}; + options.url = this.url(); + options.type = "POST"; + var full_collection_type = collection_type; + var element_identifiers = [], + name = null; + + // This mechanism is rough - no error handling, allows invalid selections, no way + // for user to pick/override element identifiers. This is only really meant + if( collection_type === "list" ) { + this.chain().each( function( hda ) { + // TODO: Handle duplicate names. + var name = hda.attributes.name; + var id = hda.get('id'); + var content_type = hda.attributes.history_content_type; + if( content_type === "dataset" ) { + if( full_collection_type !== "list" ) { + console.log( "Invalid collection type" ); + } + element_identifiers.push( { name: name, src: "hda", id: id } ); + } else { + if( full_collection_type === "list" ) { + full_collection_type = "list:" + hda.attributes.collection_type; + } else { + if( full_collection_type !== "list:" + hda.attributes.collection_type ) { + console.log( "Invalid collection type" ); + } + } + element_identifiers.push( { name: name, src: "hdca", id: id } ); + } + }); + name = "New Dataset List"; + } else if( collection_type === "paired" ) { + var ids = this.ids(); + if( ids.length !== 2 ){ + // TODO: Do something... + } + element_identifiers.push( { name: "forward", src: "hda", id: ids[ 0 ] } ); + element_identifiers.push( { name: "reverse", src: "hda", id: ids[ 1 ] } ); + name = "New Dataset Pair"; + } + options.data = { + type: "dataset_collection", + name: name, + collection_type: full_collection_type, + element_identifiers: JSON.stringify( element_identifiers ) + }; + + var xhr = jQuery.ajax( options ); + xhr.done( function( message, status, responseObj ){ + history.refresh( ); + }); + xhr.fail( function( xhr, status, message ){ + if( xhr.responseJSON && xhr.responseJSON.error ){ + error = xhr.responseJSON.error; + } else { + error = xhr.responseJSON; + } + xhr.responseText = error; + // Do something? + }); + return xhr; + }, + + /** String representation. */ + toString : function(){ + return ([ 'HistoryContents(', [ this.parentId, this.length ].join(), ')' ].join( '' )); + } +}); + + +//============================================================================== + return { + HistoryContents : HistoryContents + }; +}); diff -r 83a3792548db71c8bf69e278bf745bc5df123db7 -r 50a273de6cd76b770eb78861fee2b0a97621fa3b static/scripts/mvc/history/history-model.js --- a/static/scripts/mvc/history/history-model.js +++ b/static/scripts/mvc/history/history-model.js @@ -1,8 +1,8 @@ define([ - "mvc/dataset/hda-model", + "mvc/history/history-contents", "mvc/base-mvc", "utils/localization" -], function( hdaModel, baseMVC, _l ){ +], function( historyContents, baseMVC, _l ){ //============================================================================== /** @class Model for a Galaxy history resource - both a record of user * tool use and a collection of the datasets those tools produced. @@ -45,8 +45,8 @@ this.logger = options.logger || null; this.log( this + ".initialize:", historyJSON, hdaJSON, options ); - /** HDACollection of the HDAs contained in this history. */ - this.hdas = new hdaModel.HDACollection( hdaJSON || [], { historyId: this.get( 'id' )}); + /** HistoryContents collection of the HDAs contained in this history. */ + this.hdas = new historyContents.HistoryContents( hdaJSON || [], { historyId: this.get( 'id' )}); // if we've got hdas passed in the constructor, load them if( hdaJSON && _.isArray( hdaJSON ) ){ this.hdas.reset( hdaJSON ); @@ -230,12 +230,12 @@ } var data = {}; if( hdaDetailIds.length ) { - data[ "dataset_details" ] = hdaDetailIds.join( ',' ); + data.dataset_details = hdaDetailIds.join( ',' ); } if( hdcaDetailIds.length ) { // for symmetry, not actually used by backend of consumed // by frontend. - data[ "dataset_collection_details" ] = hdcaDetailIds.join( ',' ); + data.dataset_collection_details = hdcaDetailIds.join( ',' ); } return jQuery.ajax( galaxy_config.root + 'api/histories/' + historyData.id + '/contents', { data: data }); } diff -r 83a3792548db71c8bf69e278bf745bc5df123db7 -r 50a273de6cd76b770eb78861fee2b0a97621fa3b static/scripts/mvc/history/history-panel.js --- a/static/scripts/mvc/history/history-panel.js +++ b/static/scripts/mvc/history/history-panel.js @@ -2,11 +2,12 @@ "mvc/dataset/hda-model", "mvc/dataset/hda-edit", "mvc/collection/dataset-collection-edit", + "mvc/history/history-contents", "mvc/history/readonly-history-panel", "mvc/tags", "mvc/annotations", "utils/localization" -], function( hdaModel, hdaEdit, datasetCollectionEdit, readonlyPanel, tagsMod, annotationsMod, _l ){ +], function( hdaModel, hdaEdit, datasetCollectionEdit, historyContents, readonlyPanel, tagsMod, annotationsMod, _l ){ /* ============================================================================= TODO: @@ -36,7 +37,7 @@ HDAViewClass : hdaEdit.HDAEditView, // ......................................................................... SET UP - /** Set up the view, set up storage, bind listeners to HDACollection events + /** Set up the view, set up storage, bind listeners to HistoryContents events * @param {Object} attributes */ initialize : function( attributes ){ @@ -493,7 +494,7 @@ /** return an HdaCollection of the models of all currenly selected hdas */ getSelectedHdaCollection : function(){ - return new hdaModel.HDACollection( _.map( this.getSelectedHdaViews(), function( hdaView ){ + return new historyContents.HistoryContents( _.map( this.getSelectedHdaViews(), function( hdaView ){ return hdaView.model; }), { historyId: this.model.id }); }, diff -r 83a3792548db71c8bf69e278bf745bc5df123db7 -r 50a273de6cd76b770eb78861fee2b0a97621fa3b static/scripts/mvc/history/readonly-history-panel.js --- a/static/scripts/mvc/history/readonly-history-panel.js +++ b/static/scripts/mvc/history/readonly-history-panel.js @@ -97,7 +97,7 @@ noneFoundMsg : _l( 'No matching datasets found' ), // ......................................................................... SET UP - /** Set up the view, set up storage, bind listeners to HDACollection events + /** Set up the view, set up storage, bind listeners to HistoryContents events * @param {Object} attributes optional settings for the panel */ initialize : function( attributes ){ diff -r 83a3792548db71c8bf69e278bf745bc5df123db7 -r 50a273de6cd76b770eb78861fee2b0a97621fa3b static/scripts/packed/mvc/collection/hdca-model.js --- /dev/null +++ b/static/scripts/packed/mvc/collection/hdca-model.js @@ -0,0 +1,1 @@ +define(["mvc/history/history-content-base","utils/localization"],function(b,c){var a=b.HistoryContent.extend({defaults:{history_id:null,model_class:"HistoryDatasetCollectionAssociation",history_content_type:"dataset_collection",hid:0,id:null,name:"(unnamed dataset collection)",state:"ok",accessible:true,deleted:false,visible:true,purged:false,tags:[],annotation:""},urls:function(){},inReadyState:function(){return true},searchAttributes:["name"],searchAliases:{title:"name"},toString:function(){var d=this.get("id")||"";if(this.get("name")){d=this.get("hid")+' :"'+this.get("name")+'",'+d}return"HDCA-"+this.get("collection_type")+"("+d+")"}});return{HistoryDatasetCollectionAssociation:a}}); \ No newline at end of file diff -r 83a3792548db71c8bf69e278bf745bc5df123db7 -r 50a273de6cd76b770eb78861fee2b0a97621fa3b static/scripts/packed/mvc/dataset/hda-model.js --- a/static/scripts/packed/mvc/dataset/hda-model.js +++ b/static/scripts/packed/mvc/dataset/hda-model.js @@ -1,1 +1,1 @@ -define(["mvc/base-mvc","utils/localization"],function(e,c){var a=Backbone.Model.extend(e.LoggableMixin).extend({idAttribute:"type_id",urlRoot:galaxy_config.root+"api/histories/",constructor:function(o,n){o.type_id=a.typeIdStr(o.history_content_type,o.id);Backbone.Model.apply(this,arguments)},initialize:function(o,n){this.on("change:id",this._createTypeId)},url:function(){return this.urlRoot+this.get("history_id")+"/contents/"+this.get("history_content_type")+"s/"+this.get("id")},hidden:function(){return !this.get("visible")},"delete":function f(n){if(this.get("deleted")){return jQuery.when()}return this.save({deleted:true},n)},undelete:function j(n){if(!this.get("deleted")||this.get("purged")){return jQuery.when()}return this.save({deleted:false},n)},hide:function d(n){if(!this.get("visible")){return jQuery.when()}return this.save({visible:false},n)},unhide:function i(n){if(this.get("visible")){return jQuery.when()}return this.save({visible:true},n)},isVisible:function(o,p){var n=true;if((!o)&&(this.get("deleted")||this.get("purged"))){n=false}if((!p)&&(!this.get("visible"))){n=false}return n},searchAttribute:function(p,n){var o=this.get(p);if(!n||(o===undefined||o===null)){return false}if(_.isArray(o)){return this._searchArrayAttribute(o,n)}return(o.toString().toLowerCase().indexOf(n.toLowerCase())!==-1)},_searchArrayAttribute:function(o,n){n=n.toLowerCase();return _.any(o,function(p){return(p.toString().toLowerCase().indexOf(n.toLowerCase())!==-1)})},search:function(n){var o=this;return _.filter(this.searchAttributes,function(p){return o.searchAttribute(p,n)})},matches:function(o){var q="=",n=o.split(q);if(n.length>=2){var p=n[0];p=this.searchAliases[p]||p;return this.searchAttribute(p,n[1])}return !!this.search(o).length},matchesAll:function(o){var n=this;o=o.match(/(".*"|\w*=".*"|\S*)/g).filter(function(p){return !!p});return _.all(o,function(p){p=p.replace(/"/g,"");return n.matches(p)})},_createTypeId:function(){this.set("type_id",TypeIdModel.typeIdStr(this.get("history_content_type"),this.get("id")))},});a.typeIdStr=function h(n,o){return[n,o].join("-")};var m=a.extend({defaults:{history_id:null,model_class:"HistoryDatasetAssociation",history_content_type:"dataset",hid:0,id:null,name:"(unnamed dataset)",state:"new",deleted:false,visible:true,accessible:true,purged:false,data_type:"",file_size:0,file_ext:"",meta_files:[],misc_blurb:"",misc_info:"",tags:[],annotation:""},urls:function(){var o=this.get("id");if(!o){return{}}var n={purge:galaxy_config.root+"datasets/"+o+"/purge_async",display:galaxy_config.root+"datasets/"+o+"/display/?preview=True",edit:galaxy_config.root+"datasets/"+o+"/edit",download:galaxy_config.root+"datasets/"+o+"/display?to_ext="+this.get("file_ext"),report_error:galaxy_config.root+"dataset/errors?id="+o,rerun:galaxy_config.root+"tool_runner/rerun?id="+o,show_params:galaxy_config.root+"datasets/"+o+"/show_params",visualization:galaxy_config.root+"visualization",annotation:{get:galaxy_config.root+"dataset/get_annotation_async?id="+o,set:galaxy_config.root+"dataset/annotate_async?id="+o},meta_download:galaxy_config.root+"dataset/get_metadata_file?hda_id="+o+"&metadata_name="};return n},initialize:function(n){this.log(this+".initialize",this.attributes);this.log("\tparent history_id: "+this.get("history_id"));if(!this.get("accessible")){this.set("state",m.STATES.NOT_VIEWABLE)}this._setUpListeners()},_setUpListeners:function(){this.on("change:state",function(o,n){this.log(this+" has changed state:",o,n);if(this.inReadyState()){this.trigger("state:ready",o,n,this.previous("state"))}})},isDeletedOrPurged:function(){return(this.get("deleted")||this.get("purged"))},inReadyState:function(){var n=_.contains(m.READY_STATES,this.get("state"));return(this.isDeletedOrPurged()||n)},hasDetails:function(){return _.has(this.attributes,"genome_build")},hasData:function(){return(this.get("file_size")>0)},"delete":function f(n){if(this.get("deleted")){return jQuery.when()}return this.save({deleted:true},n)},undelete:function j(n){if(!this.get("deleted")||this.get("purged")){return jQuery.when()}return this.save({deleted:false},n)},hide:function d(n){if(!this.get("visible")){return jQuery.when()}return this.save({visible:false},n)},unhide:function i(n){if(this.get("visible")){return jQuery.when()}return this.save({visible:true},n)},purge:function g(n){if(this.get("purged")){return jQuery.when()}n=n||{};n.url=galaxy_config.root+"datasets/"+this.get("id")+"/purge_async";var o=this,p=jQuery.ajax(n);p.done(function(s,q,r){o.set({deleted:true,purged:true})});p.fail(function(u,q,t){var r=c("Unable to purge dataset");var s=("Removal of datasets by users is not allowed in this Galaxy instance");if(u.responseJSON&&u.responseJSON.error){r=u.responseJSON.error}else{if(u.responseText.indexOf(s)!==-1){r=s}}u.responseText=r;o.trigger("error",o,u,n,c(r),{error:r})});return p},searchAttributes:["name","file_ext","genome_build","misc_blurb","misc_info","annotation","tags"],searchAliases:{title:"name",format:"file_ext",database:"genome_build",blurb:"misc_blurb",description:"misc_blurb",info:"misc_info",tag:"tags"},toString:function(){var n=this.get("id")||"";if(this.get("name")){n=this.get("hid")+' :"'+this.get("name")+'",'+n}return"HDA("+n+")"}});m.STATES={UPLOAD:"upload",QUEUED:"queued",RUNNING:"running",SETTING_METADATA:"setting_metadata",NEW:"new",EMPTY:"empty",OK:"ok",PAUSED:"paused",FAILED_METADATA:"failed_metadata",NOT_VIEWABLE:"noPermission",DISCARDED:"discarded",ERROR:"error"};m.READY_STATES=[m.STATES.OK,m.STATES.EMPTY,m.STATES.PAUSED,m.STATES.FAILED_METADATA,m.STATES.NOT_VIEWABLE,m.STATES.DISCARDED,m.STATES.ERROR];m.NOT_READY_STATES=[m.STATES.UPLOAD,m.STATES.QUEUED,m.STATES.RUNNING,m.STATES.SETTING_METADATA,m.STATES.NEW];var b=Backbone.Collection.extend(e.LoggableMixin).extend({model:function(o,n){if(o.history_content_type=="dataset"){return new m(o,n)}else{if(o.history_content_type=="dataset_collection"){return new k(o,n)}else{}}},urlRoot:galaxy_config.root+"api/histories",url:function(){return this.urlRoot+"/"+this.historyId+"/contents"},initialize:function(o,n){n=n||{};this.historyId=n.historyId},ids:function(){return this.map(function(n){return n.get("id")})},notReady:function(){return this.filter(function(n){return !n.inReadyState()})},running:function(){var n=[];this.each(function(o){if(!o.inReadyState()){n.push(o.get("id"))}});return n},getByHid:function(n){return _.first(this.filter(function(o){return o.get("hid")===n}))},getVisible:function(n,q,p){p=p||[];var o=new b(this.filter(function(r){return r.isVisible(n,q)}));_.each(p,function(r){if(!_.isFunction(r)){return}o=new b(o.filter(r))});return o},haveDetails:function(){return this.all(function(n){return n.hasDetails()})},fetchAllDetails:function(o){o=o||{};var n={details:"all"};o.data=(o.data)?(_.extend(o.data,n)):(n);return this.fetch(o)},ajaxQueue:function(q,p){var o=jQuery.Deferred(),n=this.length,s=[];if(!n){o.resolve([]);return o}var r=this.chain().reverse().map(function(u,t){return function(){var v=q.call(u,p);v.done(function(w){o.notify({curr:t,total:n,response:w,model:u})});v.always(function(w){s.push(w);if(r.length){r.shift()()}else{o.resolve(s)}})}}).value();r.shift()();return o},matches:function(n){return this.filter(function(o){return o.matches(n)})},set:function(p,n){var o=this;p=_.map(p,function(s){var r=s.attributes||s;var t=a.typeIdStr(r.history_content_type,r.id);var u=o.get(t);if(!u){return s}var q=u.toJSON();_.extend(q,s);return q});Backbone.Collection.prototype.set.call(this,p,n)},promoteToHistoryDatasetCollection:function l(s,q,o){o=o||{};o.url=this.url();o.type="POST";var u=q;var r=[],n=null;if(q=="list"){this.chain().each(function(x){var v=x.attributes.name;var y=x.get("id");var w=x.attributes.history_content_type;if(w=="dataset"){if(u!="list"){console.log("Invalid collection type")}r.push({name:v,src:"hda",id:y})}else{if(u=="list"){u="list:"+x.attributes.collection_type}else{if(u!="list:"+x.attributes.collection_type){console.log("Invalid collection type")}}r.push({name:v,src:"hdca",id:y})}});n="New Dataset List"}else{if(q=="paired"){var p=this.ids();if(p.length!=2){}r.push({name:"forward",src:"hda",id:p[0]});r.push({name:"reverse",src:"hda",id:p[1]});n="New Dataset Pair"}}o.data={type:"dataset_collection",name:n,collection_type:u,element_identifiers:JSON.stringify(r),};var t=jQuery.ajax(o);t.done(function(x,v,w){s.refresh()});t.fail(function(x,v,w){if(x.responseJSON&&x.responseJSON.error){error=x.responseJSON.error}else{error=x.responseJSON}x.responseText=error});return t},toString:function(){return(["HDACollection(",[this.historyId,this.length].join(),")"].join(""))}});var k=a.extend({defaults:{history_id:null,model_class:"HistoryDatasetCollectionAssociation",history_content_type:"dataset_collection",hid:0,id:null,name:"(unnamed dataset collection)",state:"ok",accessible:true,deleted:false,visible:true,purged:false,tags:[],annotation:""},urls:function(){},inReadyState:function(){return true},searchAttributes:["name"],searchAliases:{title:"name"},});return{HistoryDatasetAssociation:m,HDACollection:b}}); \ No newline at end of file +define(["mvc/history/history-content-base","utils/localization"],function(e,f){var d=e.HistoryContent.extend({defaults:{history_id:null,model_class:"HistoryDatasetAssociation",history_content_type:"dataset",hid:0,id:null,name:"(unnamed dataset)",state:"new",deleted:false,visible:true,accessible:true,purged:false,data_type:"",file_size:0,file_ext:"",meta_files:[],misc_blurb:"",misc_info:"",tags:[],annotation:""},urls:function(){var j=this.get("id");if(!j){return{}}var i={purge:galaxy_config.root+"datasets/"+j+"/purge_async",display:galaxy_config.root+"datasets/"+j+"/display/?preview=True",edit:galaxy_config.root+"datasets/"+j+"/edit",download:galaxy_config.root+"datasets/"+j+"/display?to_ext="+this.get("file_ext"),report_error:galaxy_config.root+"dataset/errors?id="+j,rerun:galaxy_config.root+"tool_runner/rerun?id="+j,show_params:galaxy_config.root+"datasets/"+j+"/show_params",visualization:galaxy_config.root+"visualization",annotation:{get:galaxy_config.root+"dataset/get_annotation_async?id="+j,set:galaxy_config.root+"dataset/annotate_async?id="+j},meta_download:galaxy_config.root+"dataset/get_metadata_file?hda_id="+j+"&metadata_name="};return i},initialize:function(i){this.log(this+".initialize",this.attributes);this.log("\tparent history_id: "+this.get("history_id"));if(!this.get("accessible")){this.set("state",d.STATES.NOT_VIEWABLE)}this._setUpListeners()},_setUpListeners:function(){this.on("change:state",function(j,i){this.log(this+" has changed state:",j,i);if(this.inReadyState()){this.trigger("state:ready",j,i,this.previous("state"))}})},isDeletedOrPurged:function(){return(this.get("deleted")||this.get("purged"))},inReadyState:function(){var i=_.contains(d.READY_STATES,this.get("state"));return(this.isDeletedOrPurged()||i)},hasDetails:function(){return _.has(this.attributes,"genome_build")},hasData:function(){return(this.get("file_size")>0)},"delete":function c(i){if(this.get("deleted")){return jQuery.when()}return this.save({deleted:true},i)},undelete:function a(i){if(!this.get("deleted")||this.get("purged")){return jQuery.when()}return this.save({deleted:false},i)},hide:function b(i){if(!this.get("visible")){return jQuery.when()}return this.save({visible:false},i)},unhide:function h(i){if(this.get("visible")){return jQuery.when()}return this.save({visible:true},i)},purge:function g(i){if(this.get("purged")){return jQuery.when()}i=i||{};i.url=galaxy_config.root+"datasets/"+this.get("id")+"/purge_async";var j=this,k=jQuery.ajax(i);k.done(function(n,l,m){j.set({deleted:true,purged:true})});k.fail(function(p,l,o){var m=f("Unable to purge dataset");var n=("Removal of datasets by users is not allowed in this Galaxy instance");if(p.responseJSON&&p.responseJSON.error){m=p.responseJSON.error}else{if(p.responseText.indexOf(n)!==-1){m=n}}p.responseText=m;j.trigger("error",j,p,i,f(m),{error:m})});return k},searchAttributes:["name","file_ext","genome_build","misc_blurb","misc_info","annotation","tags"],searchAliases:{title:"name",format:"file_ext",database:"genome_build",blurb:"misc_blurb",description:"misc_blurb",info:"misc_info",tag:"tags"},toString:function(){var i=this.get("id")||"";if(this.get("name")){i=this.get("hid")+' :"'+this.get("name")+'",'+i}return"HDA("+i+")"}});d.STATES={UPLOAD:"upload",QUEUED:"queued",RUNNING:"running",SETTING_METADATA:"setting_metadata",NEW:"new",EMPTY:"empty",OK:"ok",PAUSED:"paused",FAILED_METADATA:"failed_metadata",NOT_VIEWABLE:"noPermission",DISCARDED:"discarded",ERROR:"error"};d.READY_STATES=[d.STATES.OK,d.STATES.EMPTY,d.STATES.PAUSED,d.STATES.FAILED_METADATA,d.STATES.NOT_VIEWABLE,d.STATES.DISCARDED,d.STATES.ERROR];d.NOT_READY_STATES=[d.STATES.UPLOAD,d.STATES.QUEUED,d.STATES.RUNNING,d.STATES.SETTING_METADATA,d.STATES.NEW];return{HistoryDatasetAssociation:d}}); \ No newline at end of file diff -r 83a3792548db71c8bf69e278bf745bc5df123db7 -r 50a273de6cd76b770eb78861fee2b0a97621fa3b static/scripts/packed/mvc/history/history-content-base.js --- /dev/null +++ b/static/scripts/packed/mvc/history/history-content-base.js @@ -0,0 +1,1 @@ +define(["mvc/base-mvc","utils/localization"],function(b,e){var f=Backbone.Model.extend(b.LoggableMixin).extend({idAttribute:"type_id",constructor:function(j,i){j.type_id=f.typeIdStr(j.history_content_type,j.id);Backbone.Model.apply(this,arguments)},initialize:function(j,i){this.on("change:id",this._createTypeId)},_createTypeId:function(){this.set("type_id",TypeIdModel.typeIdStr(this.get("history_content_type"),this.get("id")))},hidden:function(){return !this.get("visible")},isVisible:function(j,k){var i=true;if((!j)&&(this.get("deleted")||this.get("purged"))){i=false}if((!k)&&(!this.get("visible"))){i=false}return i},urlRoot:galaxy_config.root+"api/histories/",url:function(){return this.urlRoot+this.get("history_id")+"/contents/"+this.get("history_content_type")+"s/"+this.get("id")},"delete":function d(i){if(this.get("deleted")){return jQuery.when()}return this.save({deleted:true},i)},undelete:function a(i){if(!this.get("deleted")||this.get("purged")){return jQuery.when()}return this.save({deleted:false},i)},hide:function c(i){if(!this.get("visible")){return jQuery.when()}return this.save({visible:false},i)},unhide:function g(i){if(this.get("visible")){return jQuery.when()}return this.save({visible:true},i)},searchAttribute:function(k,i){var j=this.get(k);if(!i||(j===undefined||j===null)){return false}if(_.isArray(j)){return this._searchArrayAttribute(j,i)}return(j.toString().toLowerCase().indexOf(i.toLowerCase())!==-1)},_searchArrayAttribute:function(j,i){i=i.toLowerCase();return _.any(j,function(k){return(k.toString().toLowerCase().indexOf(i.toLowerCase())!==-1)})},search:function(i){var j=this;return _.filter(this.searchAttributes,function(k){return j.searchAttribute(k,i)})},matches:function(j){var l="=",i=j.split(l);if(i.length>=2){var k=i[0];k=this.searchAliases[k]||k;return this.searchAttribute(k,i[1])}return !!this.search(j).length},matchesAll:function(j){var i=this;j=j.match(/(".*"|\w*=".*"|\S*)/g).filter(function(k){return !!k});return _.all(j,function(k){k=k.replace(/"/g,"");return i.matches(k)})},toString:function(){var i=this.get("id")||"";if(this.get("name")){i=this.get("hid")+' :"'+this.get("name")+'",'+i}return"HistoryContent("+i+")"}});f.typeIdStr=function h(i,j){return[i,j].join("-")};return{HistoryContent:f}}); \ No newline at end of file diff -r 83a3792548db71c8bf69e278bf745bc5df123db7 -r 50a273de6cd76b770eb78861fee2b0a97621fa3b static/scripts/packed/mvc/history/history-contents.js --- /dev/null +++ b/static/scripts/packed/mvc/history/history-contents.js @@ -0,0 +1,1 @@ +define(["mvc/history/history-content-base","mvc/dataset/hda-model","mvc/collection/hdca-model","mvc/base-mvc","utils/localization"],function(b,d,f,a,c){var g=Backbone.Collection.extend(a.LoggableMixin).extend({model:function(i,h){console.debug("HistoryContents.model:",i);if(i.history_content_type==="dataset"){return new d.HistoryDatasetAssociation(i,h)}else{if(i.history_content_type==="dataset_collection"){return new f.HistoryDatasetCollectionAssociation(i,h)}}throw new TypeError("Unknown history_content_type:"+i.history_content_type)},initialize:function(i,h){h=h||{};console.debug("new HistoryContents",i,h);this.historyId=h.historyId},urlRoot:galaxy_config.root+"api/histories",url:function(){return this.urlRoot+"/"+this.historyId+"/contents"},ids:function(){return this.map(function(h){return h.get("id")})},notReady:function(){return this.filter(function(h){return !h.inReadyState()})},running:function(){var h=[];this.each(function(i){if(!i.inReadyState()){h.push(i.get("id"))}});return h},getByHid:function(h){return _.first(this.filter(function(i){return i.get("hid")===h}))},getVisible:function(h,k,j){j=j||[];var i=new g(this.filter(function(l){return l.isVisible(h,k)}));_.each(j,function(l){if(!_.isFunction(l)){return}i=new g(i.filter(l))});return i},haveDetails:function(){return this.all(function(h){return h.hasDetails()})},fetchAllDetails:function(i){i=i||{};var h={details:"all"};i.data=(i.data)?(_.extend(i.data,h)):(h);return this.fetch(i)},ajaxQueue:function(k,j){var i=jQuery.Deferred(),h=this.length,m=[];if(!h){i.resolve([]);return i}var l=this.chain().reverse().map(function(o,n){return function(){var p=k.call(o,j);p.done(function(q){i.notify({curr:n,total:h,response:q,model:o})});p.always(function(q){m.push(q);if(l.length){l.shift()()}else{i.resolve(m)}})}}).value();l.shift()();return i},matches:function(h){return this.filter(function(i){return i.matches(h)})},set:function(j,h){var i=this;j=_.map(j,function(m){var l=m.attributes||m;var n=b.HistoryContent.typeIdStr(l.history_content_type,l.id);var o=i.get(n);if(!o){return m}var k=o.toJSON();_.extend(k,m);return k});Backbone.Collection.prototype.set.call(this,j,h)},promoteToHistoryDatasetCollection:function e(m,k,i){i=i||{};i.url=this.url();i.type="POST";var o=k;var l=[],h=null;if(k==="list"){this.chain().each(function(r){var p=r.attributes.name;var s=r.get("id");var q=r.attributes.history_content_type;if(q==="dataset"){if(o!=="list"){console.log("Invalid collection type")}l.push({name:p,src:"hda",id:s})}else{if(o==="list"){o="list:"+r.attributes.collection_type}else{if(o!=="list:"+r.attributes.collection_type){console.log("Invalid collection type")}}l.push({name:p,src:"hdca",id:s})}});h="New Dataset List"}else{if(k==="paired"){var j=this.ids();if(j.length!==2){}l.push({name:"forward",src:"hda",id:j[0]});l.push({name:"reverse",src:"hda",id:j[1]});h="New Dataset Pair"}}i.data={type:"dataset_collection",name:h,collection_type:o,element_identifiers:JSON.stringify(l)};var n=jQuery.ajax(i);n.done(function(r,p,q){m.refresh()});n.fail(function(r,p,q){if(r.responseJSON&&r.responseJSON.error){error=r.responseJSON.error}else{error=r.responseJSON}r.responseText=error});return n},toString:function(){return(["HistoryContents(",[this.parentId,this.length].join(),")"].join(""))}});return{HistoryContents:g}}); \ No newline at end of file diff -r 83a3792548db71c8bf69e278bf745bc5df123db7 -r 50a273de6cd76b770eb78861fee2b0a97621fa3b static/scripts/packed/mvc/history/history-model.js --- a/static/scripts/packed/mvc/history/history-model.js +++ b/static/scripts/packed/mvc/history/history-model.js @@ -1,1 +1,1 @@ -define(["mvc/dataset/hda-model","mvc/base-mvc","utils/localization"],function(c,a,b){var e=Backbone.Model.extend(a.LoggableMixin).extend({defaults:{model_class:"History",id:null,name:"Unnamed History",state:"new",diskSize:0,deleted:false},urlRoot:galaxy_config.root+"api/histories",initialize:function(h,i,g){g=g||{};this.logger=g.logger||null;this.log(this+".initialize:",h,i,g);this.hdas=new c.HDACollection(i||[],{historyId:this.get("id")});if(i&&_.isArray(i)){this.hdas.reset(i)}this._setUpListeners();this.updateTimeoutId=null},_setUpListeners:function(){this.on("error",function(h,k,g,j,i){this.errorHandler(h,k,g,j,i)});if(this.hdas){this.listenTo(this.hdas,"error",function(){this.trigger.apply(this,["error:hdas"].concat(jQuery.makeArray(arguments)))})}this.on("change:id",function(h,g){if(this.hdas){this.hdas.historyId=g}},this)},errorHandler:function(h,k,g,j,i){this.clearUpdateTimeout()},ownedByCurrUser:function(){if(!Galaxy||!Galaxy.currUser){return false}if(Galaxy.currUser.isAnonymous()||Galaxy.currUser.id!==this.get("user_id")){return false}return true},hdaCount:function(){return _.reduce(_.values(this.get("state_details")),function(g,h){return g+h},0)},checkForUpdates:function(g){if(this.hdas.running().length){this.setUpdateTimeout()}else{this.trigger("ready");if(_.isFunction(g)){g.call(this)}}return this},setUpdateTimeout:function(g){g=g||e.UPDATE_DELAY;var h=this;this.clearUpdateTimeout();this.updateTimeoutId=setTimeout(function(){h.refresh()},g);return this.updateTimeoutId},clearUpdateTimeout:function(){if(this.updateTimeoutId){clearTimeout(this.updateTimeoutId);this.updateTimeoutId=null}},refresh:function(h,g){h=h||[];g=g||{};var i=this;g.data=g.data||{};if(h.length){g.data.details=h.join(",")}var j=this.hdas.fetch(g);j.done(function(k){i.checkForUpdates(function(){this.fetch()})});return j},toString:function(){return"History("+this.get("id")+","+this.get("name")+")"}});e.UPDATE_DELAY=4000;e.getHistoryData=function f(h,s){s=s||{};var m=s.hdaDetailIds||[];var j=s.hdcaDetailIds||[];var o=jQuery.Deferred(),n=null;function i(t){return jQuery.ajax(galaxy_config.root+"api/histories/"+h)}function g(t){if(!t||!t.state_ids){return 0}return _.reduce(t.state_ids,function(u,w,v){return u+w.length},0)}function r(u){if(!g(u)){return[]}if(_.isFunction(m)){m=m(u)}if(_.isFunction(j)){j=j(u)}var t={};if(m.length){t.dataset_details=m.join(",")}if(j.length){t.dataset_collection_details=j.join(",")}return jQuery.ajax(galaxy_config.root+"api/histories/"+u.id+"/contents",{data:t})}var q=s.historyFn||i,p=s.hdaFn||r;var l=q(h);l.done(function(t){n=t;o.notify({status:"history data retrieved",historyJSON:n})});l.fail(function(v,t,u){o.reject(v,"loading the history")});var k=l.then(p);k.then(function(t){o.notify({status:"dataset data retrieved",historyJSON:n,hdaJSON:t});o.resolve(n,t)});k.fail(function(v,t,u){o.reject(v,"loading the datasets",{history:n})});return o};var d=Backbone.Collection.extend(a.LoggableMixin).extend({model:e,urlRoot:galaxy_config.root+"api/histories"});return{History:e,HistoryCollection:d}}); \ No newline at end of file +define(["mvc/history/history-contents","mvc/base-mvc","utils/localization"],function(e,a,b){var d=Backbone.Model.extend(a.LoggableMixin).extend({defaults:{model_class:"History",id:null,name:"Unnamed History",state:"new",diskSize:0,deleted:false},urlRoot:galaxy_config.root+"api/histories",initialize:function(h,i,g){g=g||{};this.logger=g.logger||null;this.log(this+".initialize:",h,i,g);this.hdas=new e.HistoryContents(i||[],{historyId:this.get("id")});if(i&&_.isArray(i)){this.hdas.reset(i)}this._setUpListeners();this.updateTimeoutId=null},_setUpListeners:function(){this.on("error",function(h,k,g,j,i){this.errorHandler(h,k,g,j,i)});if(this.hdas){this.listenTo(this.hdas,"error",function(){this.trigger.apply(this,["error:hdas"].concat(jQuery.makeArray(arguments)))})}this.on("change:id",function(h,g){if(this.hdas){this.hdas.historyId=g}},this)},errorHandler:function(h,k,g,j,i){this.clearUpdateTimeout()},ownedByCurrUser:function(){if(!Galaxy||!Galaxy.currUser){return false}if(Galaxy.currUser.isAnonymous()||Galaxy.currUser.id!==this.get("user_id")){return false}return true},hdaCount:function(){return _.reduce(_.values(this.get("state_details")),function(g,h){return g+h},0)},checkForUpdates:function(g){if(this.hdas.running().length){this.setUpdateTimeout()}else{this.trigger("ready");if(_.isFunction(g)){g.call(this)}}return this},setUpdateTimeout:function(g){g=g||d.UPDATE_DELAY;var h=this;this.clearUpdateTimeout();this.updateTimeoutId=setTimeout(function(){h.refresh()},g);return this.updateTimeoutId},clearUpdateTimeout:function(){if(this.updateTimeoutId){clearTimeout(this.updateTimeoutId);this.updateTimeoutId=null}},refresh:function(h,g){h=h||[];g=g||{};var i=this;g.data=g.data||{};if(h.length){g.data.details=h.join(",")}var j=this.hdas.fetch(g);j.done(function(k){i.checkForUpdates(function(){this.fetch()})});return j},toString:function(){return"History("+this.get("id")+","+this.get("name")+")"}});d.UPDATE_DELAY=4000;d.getHistoryData=function f(h,s){s=s||{};var m=s.hdaDetailIds||[];var j=s.hdcaDetailIds||[];var o=jQuery.Deferred(),n=null;function i(t){return jQuery.ajax(galaxy_config.root+"api/histories/"+h)}function g(t){if(!t||!t.state_ids){return 0}return _.reduce(t.state_ids,function(u,w,v){return u+w.length},0)}function r(u){if(!g(u)){return[]}if(_.isFunction(m)){m=m(u)}if(_.isFunction(j)){j=j(u)}var t={};if(m.length){t.dataset_details=m.join(",")}if(j.length){t.dataset_collection_details=j.join(",")}return jQuery.ajax(galaxy_config.root+"api/histories/"+u.id+"/contents",{data:t})}var q=s.historyFn||i,p=s.hdaFn||r;var l=q(h);l.done(function(t){n=t;o.notify({status:"history data retrieved",historyJSON:n})});l.fail(function(v,t,u){o.reject(v,"loading the history")});var k=l.then(p);k.then(function(t){o.notify({status:"dataset data retrieved",historyJSON:n,hdaJSON:t});o.resolve(n,t)});k.fail(function(v,t,u){o.reject(v,"loading the datasets",{history:n})});return o};var c=Backbone.Collection.extend(a.LoggableMixin).extend({model:d,urlRoot:galaxy_config.root+"api/histories"});return{History:d,HistoryCollection:c}}); \ No newline at end of file diff -r 83a3792548db71c8bf69e278bf745bc5df123db7 -r 50a273de6cd76b770eb78861fee2b0a97621fa3b static/scripts/packed/mvc/history/history-panel.js --- a/static/scripts/packed/mvc/history/history-panel.js +++ b/static/scripts/packed/mvc/history/history-panel.js @@ -1,1 +1,1 @@ -define(["mvc/dataset/hda-model","mvc/dataset/hda-edit","mvc/collection/dataset-collection-edit","mvc/history/readonly-history-panel","mvc/tags","mvc/annotations","utils/localization"],function(f,b,h,d,a,c,e){var g=d.ReadOnlyHistoryPanel.extend({HDAViewClass:b.HDAEditView,initialize:function(i){i=i||{};this.selectedHdaIds=[];this.lastSelectedViewId=null;this.tagsEditor=null;this.annotationEditor=null;this.purgeAllowed=i.purgeAllowed||false;this.selecting=i.selecting||false;this.annotationEditorShown=i.annotationEditorShown||false;this.tagsEditorShown=i.tagsEditorShown||false;d.ReadOnlyHistoryPanel.prototype.initialize.call(this,i)},_setUpModelEventHandlers:function(){d.ReadOnlyHistoryPanel.prototype._setUpModelEventHandlers.call(this);this.model.on("change:nice_size",this.updateHistoryDiskSize,this);this.model.hdas.on("change:deleted",this._handleHdaDeletionChange,this);this.model.hdas.on("change:visible",this._handleHdaVisibleChange,this);this.model.hdas.on("change:purged",function(i){this.model.fetch()},this)},renderModel:function(){var i=$("<div/>");i.append(g.templates.historyPanel(this.model.toJSON()));this.$emptyMessage(i).text(this.emptyMsg);if(Galaxy&&Galaxy.currUser&&Galaxy.currUser.id&&Galaxy.currUser.id===this.model.get("user_id")){this._renderTags(i);this._renderAnnotation(i)}i.find(".history-secondary-actions").prepend(this._renderSelectButton());i.find(".history-dataset-actions").toggle(this.selecting);i.find(".history-secondary-actions").prepend(this._renderSearchButton());this._setUpBehaviours(i);this.renderHdas(i);return i},_renderTags:function(i){var j=this;this.tagsEditor=new a.TagsEditor({model:this.model,el:i.find(".history-controls .tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){j.toggleHDATagEditors(true,j.fxSpeed)},onhide:function(){j.toggleHDATagEditors(false,j.fxSpeed)},$activator:faIconButton({title:e("Edit history tags"),classes:"history-tag-btn",faIcon:"fa-tags"}).appendTo(i.find(".history-secondary-actions"))})},_renderAnnotation:function(i){var j=this;this.annotationEditor=new c.AnnotationEditor({model:this.model,el:i.find(".history-controls .annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){j.toggleHDAAnnotationEditors(true,j.fxSpeed)},onhide:function(){j.toggleHDAAnnotationEditors(false,j.fxSpeed)},$activator:faIconButton({title:e("Edit history annotation"),classes:"history-annotate-btn",faIcon:"fa-comment"}).appendTo(i.find(".history-secondary-actions"))})},_renderSelectButton:function(i){return faIconButton({title:e("Operations on multiple datasets"),classes:"history-select-btn",faIcon:"fa-check-square-o"})},_setUpBehaviours:function(i){i=i||this.$el;d.ReadOnlyHistoryPanel.prototype._setUpBehaviours.call(this,i);if(!this.model){return}this._setUpDatasetActionsPopup(i);if((!Galaxy.currUser||Galaxy.currUser.isAnonymous())||(Galaxy.currUser.id!==this.model.get("user_id"))){return}var j=this;i.find(".history-name").attr("title",e("Click to rename history")).tooltip({placement:"bottom"}).make_text_editable({on_finish:function(k){var l=j.model.get("name");if(k&&k!==l){j.$el.find(".history-name").text(k);j.model.save({name:k}).fail(function(){j.$el.find(".history-name").text(j.model.previous("name"))})}else{j.$el.find(".history-name").text(l)}}})},_setUpDatasetActionsPopup:function(i){var j=this,k=[{html:e("Hide datasets"),func:function(){var l=f.HistoryDatasetAssociation.prototype.hide;j.getSelectedHdaCollection().ajaxQueue(l)}},{html:e("Unhide datasets"),func:function(){var l=f.HistoryDatasetAssociation.prototype.unhide;j.getSelectedHdaCollection().ajaxQueue(l)}},{html:e("Delete datasets"),func:function(){var l=f.HistoryDatasetAssociation.prototype["delete"];j.getSelectedHdaCollection().ajaxQueue(l)}},{html:e("Undelete datasets"),func:function(){var l=f.HistoryDatasetAssociation.prototype.undelete;j.getSelectedHdaCollection().ajaxQueue(l)}}];if(j.purgeAllowed){k.push({html:e("Permanently delete datasets"),func:function(){if(confirm(e("This will permanently remove the data in your datasets. Are you sure?"))){var l=f.HistoryDatasetAssociation.prototype.purge;j.getSelectedHdaCollection().ajaxQueue(l)}}})}k.push({html:e("Build Dataset List (Experimental)"),func:function(){j.getSelectedHdaCollection().promoteToHistoryDatasetCollection(j.model,"list")}});k.push({html:e("Build Dataset Pair (Experimental)"),func:function(){j.getSelectedHdaCollection().promoteToHistoryDatasetCollection(j.model,"paired")}});k.push({html:e("Build List of Dataset Pairs (Experimental)"),func:_.bind(j._showPairedCollectionModal,j)});return new PopupMenu(i.find(".history-dataset-action-popup-btn"),k)},_showPairedCollectionModal:function(){var i=this,j=i.getSelectedHdaCollection().toJSON().filter(function(k){return k.history_content_type==="dataset"&&k.state===f.HistoryDatasetAssociation.STATES.OK});if(j.length){require(["mvc/collection/paired-collection-creator"],function(k){window.creator=k.pairedCollectionCreatorModal(j,{historyId:i.model.id})})}else{}},_handleHdaDeletionChange:function(i){if(i.get("deleted")&&!this.storage.get("show_deleted")){this.removeHdaView(this.hdaViews[i.id])}},_handleHdaVisibleChange:function(i){if(i.hidden()&&!this.storage.get("show_hidden")){this.removeHdaView(this.hdaViews[i.id])}},_createContentView:function(j){var i=j.id,l=j.get("history_content_type"),k=null;if(l==="dataset"){k=new this.HDAViewClass({model:j,linkTarget:this.linkTarget,expanded:this.storage.get("expandedHdas")[i],selectable:this.selecting,purgeAllowed:this.purgeAllowed,hasUser:this.model.ownedByCurrUser(),logger:this.logger,tagsEditorShown:(this.tagsEditor&&!this.tagsEditor.hidden),annotationEditorShown:(this.annotationEditor&&!this.annotationEditor.hidden)})}else{if(l==="dataset_collection"){k=new h.DatasetCollectionEditView({model:j,linkTarget:this.linkTarget,expanded:this.storage.get("expandedHdas")[i],hasUser:this.model.ownedByCurrUser(),logger:this.logger})}}this._setUpHdaListeners(k);return k},_setUpHdaListeners:function(j){var i=this;d.ReadOnlyHistoryPanel.prototype._setUpHdaListeners.call(this,j);j.on("selected",function(m,l){if(!l){return}var k=[];if((l.shiftKey)&&(i.lastSelectedViewId&&_.has(i.hdaViews,i.lastSelectedViewId))){var o=i.hdaViews[i.lastSelectedViewId];k=i.selectDatasetRange(m,o).map(function(p){return p.model.id})}else{var n=m.model.id;i.lastSelectedViewId=n;k=[n]}i.selectedHdaIds=_.union(i.selectedHdaIds,k)});j.on("de-selected",function(l,k){var m=l.model.id;i.selectedHdaIds=_.without(i.selectedHdaIds,m)})},toggleHDATagEditors:function(i){var j=arguments;_.each(this.hdaViews,function(k){if(k.tagsEditor){k.tagsEditor.toggle.apply(k.tagsEditor,j)}})},toggleHDAAnnotationEditors:function(i){var j=arguments;_.each(this.hdaViews,function(k){if(k.annotationEditor){k.annotationEditor.toggle.apply(k.annotationEditor,j)}})},removeHdaView:function(j){if(!j){return}var i=this;j.$el.fadeOut(i.fxSpeed,function(){j.off();j.remove();delete i.hdaViews[j.model.id];if(_.isEmpty(i.hdaViews)){i.trigger("empty-history",i);i._renderEmptyMsg()}})},events:_.extend(_.clone(d.ReadOnlyHistoryPanel.prototype.events),{"click .history-select-btn":"toggleSelectors","click .history-select-all-datasets-btn":"selectAllDatasets","click .history-deselect-all-datasets-btn":"deselectAllDatasets"}),updateHistoryDiskSize:function(){this.$el.find(".history-size").text(this.model.get("nice_size"))},showSelectors:function(i){i=(i!==undefined)?(i):(this.fxSpeed);this.selecting=true;this.$(".history-dataset-actions").slideDown(i);_.each(this.hdaViews,function(j){j.showSelector()});this.selectedHdaIds=[];this.lastSelectedViewId=null},hideSelectors:function(i){i=(i!==undefined)?(i):(this.fxSpeed);this.selecting=false;this.$(".history-dataset-actions").slideUp(i);_.each(this.hdaViews,function(j){j.hideSelector()});this.selectedHdaIds=[];this.lastSelectedViewId=null},toggleSelectors:function(){if(!this.selecting){this.showSelectors()}else{this.hideSelectors()}},selectAllDatasets:function(i){_.each(this.hdaViews,function(j){j.select(i)})},deselectAllDatasets:function(i){this.lastSelectedViewId=null;_.each(this.hdaViews,function(j){j.deselect(i)})},selectDatasetRange:function(k,j){var i=this.hdaViewRange(k,j);_.each(i,function(l){l.select()});return i},getSelectedHdaViews:function(){return _.filter(this.hdaViews,function(i){return i.selected})},getSelectedHdaCollection:function(){return new f.HDACollection(_.map(this.getSelectedHdaViews(),function(i){return i.model}),{historyId:this.model.id})},toString:function(){return"HistoryPanel("+((this.model)?(this.model.get("name")):(""))+")"}});return{HistoryPanel:g}}); \ No newline at end of file +define(["mvc/dataset/hda-model","mvc/dataset/hda-edit","mvc/collection/dataset-collection-edit","mvc/history/history-contents","mvc/history/readonly-history-panel","mvc/tags","mvc/annotations","utils/localization"],function(f,h,b,g,c,d,i,a){var e=c.ReadOnlyHistoryPanel.extend({HDAViewClass:h.HDAEditView,initialize:function(j){j=j||{};this.selectedHdaIds=[];this.lastSelectedViewId=null;this.tagsEditor=null;this.annotationEditor=null;this.purgeAllowed=j.purgeAllowed||false;this.selecting=j.selecting||false;this.annotationEditorShown=j.annotationEditorShown||false;this.tagsEditorShown=j.tagsEditorShown||false;c.ReadOnlyHistoryPanel.prototype.initialize.call(this,j)},_setUpModelEventHandlers:function(){c.ReadOnlyHistoryPanel.prototype._setUpModelEventHandlers.call(this);this.model.on("change:nice_size",this.updateHistoryDiskSize,this);this.model.hdas.on("change:deleted",this._handleHdaDeletionChange,this);this.model.hdas.on("change:visible",this._handleHdaVisibleChange,this);this.model.hdas.on("change:purged",function(j){this.model.fetch()},this)},renderModel:function(){var j=$("<div/>");j.append(e.templates.historyPanel(this.model.toJSON()));this.$emptyMessage(j).text(this.emptyMsg);if(Galaxy&&Galaxy.currUser&&Galaxy.currUser.id&&Galaxy.currUser.id===this.model.get("user_id")){this._renderTags(j);this._renderAnnotation(j)}j.find(".history-secondary-actions").prepend(this._renderSelectButton());j.find(".history-dataset-actions").toggle(this.selecting);j.find(".history-secondary-actions").prepend(this._renderSearchButton());this._setUpBehaviours(j);this.renderHdas(j);return j},_renderTags:function(j){var k=this;this.tagsEditor=new d.TagsEditor({model:this.model,el:j.find(".history-controls .tags-display"),onshowFirstTime:function(){this.render()},onshow:function(){k.toggleHDATagEditors(true,k.fxSpeed)},onhide:function(){k.toggleHDATagEditors(false,k.fxSpeed)},$activator:faIconButton({title:a("Edit history tags"),classes:"history-tag-btn",faIcon:"fa-tags"}).appendTo(j.find(".history-secondary-actions"))})},_renderAnnotation:function(j){var k=this;this.annotationEditor=new i.AnnotationEditor({model:this.model,el:j.find(".history-controls .annotation-display"),onshowFirstTime:function(){this.render()},onshow:function(){k.toggleHDAAnnotationEditors(true,k.fxSpeed)},onhide:function(){k.toggleHDAAnnotationEditors(false,k.fxSpeed)},$activator:faIconButton({title:a("Edit history annotation"),classes:"history-annotate-btn",faIcon:"fa-comment"}).appendTo(j.find(".history-secondary-actions"))})},_renderSelectButton:function(j){return faIconButton({title:a("Operations on multiple datasets"),classes:"history-select-btn",faIcon:"fa-check-square-o"})},_setUpBehaviours:function(j){j=j||this.$el;c.ReadOnlyHistoryPanel.prototype._setUpBehaviours.call(this,j);if(!this.model){return}this._setUpDatasetActionsPopup(j);if((!Galaxy.currUser||Galaxy.currUser.isAnonymous())||(Galaxy.currUser.id!==this.model.get("user_id"))){return}var k=this;j.find(".history-name").attr("title",a("Click to rename history")).tooltip({placement:"bottom"}).make_text_editable({on_finish:function(l){var m=k.model.get("name");if(l&&l!==m){k.$el.find(".history-name").text(l);k.model.save({name:l}).fail(function(){k.$el.find(".history-name").text(k.model.previous("name"))})}else{k.$el.find(".history-name").text(m)}}})},_setUpDatasetActionsPopup:function(j){var k=this,l=[{html:a("Hide datasets"),func:function(){var m=f.HistoryDatasetAssociation.prototype.hide;k.getSelectedHdaCollection().ajaxQueue(m)}},{html:a("Unhide datasets"),func:function(){var m=f.HistoryDatasetAssociation.prototype.unhide;k.getSelectedHdaCollection().ajaxQueue(m)}},{html:a("Delete datasets"),func:function(){var m=f.HistoryDatasetAssociation.prototype["delete"];k.getSelectedHdaCollection().ajaxQueue(m)}},{html:a("Undelete datasets"),func:function(){var m=f.HistoryDatasetAssociation.prototype.undelete;k.getSelectedHdaCollection().ajaxQueue(m)}}];if(k.purgeAllowed){l.push({html:a("Permanently delete datasets"),func:function(){if(confirm(a("This will permanently remove the data in your datasets. Are you sure?"))){var m=f.HistoryDatasetAssociation.prototype.purge;k.getSelectedHdaCollection().ajaxQueue(m)}}})}l.push({html:a("Build Dataset List (Experimental)"),func:function(){k.getSelectedHdaCollection().promoteToHistoryDatasetCollection(k.model,"list")}});l.push({html:a("Build Dataset Pair (Experimental)"),func:function(){k.getSelectedHdaCollection().promoteToHistoryDatasetCollection(k.model,"paired")}});l.push({html:a("Build List of Dataset Pairs (Experimental)"),func:_.bind(k._showPairedCollectionModal,k)});return new PopupMenu(j.find(".history-dataset-action-popup-btn"),l)},_showPairedCollectionModal:function(){var j=this,k=j.getSelectedHdaCollection().toJSON().filter(function(l){return l.history_content_type==="dataset"&&l.state===f.HistoryDatasetAssociation.STATES.OK});if(k.length){require(["mvc/collection/paired-collection-creator"],function(l){window.creator=l.pairedCollectionCreatorModal(k,{historyId:j.model.id})})}else{}},_handleHdaDeletionChange:function(j){if(j.get("deleted")&&!this.storage.get("show_deleted")){this.removeHdaView(this.hdaViews[j.id])}},_handleHdaVisibleChange:function(j){if(j.hidden()&&!this.storage.get("show_hidden")){this.removeHdaView(this.hdaViews[j.id])}},_createContentView:function(k){var j=k.id,m=k.get("history_content_type"),l=null;if(m==="dataset"){l=new this.HDAViewClass({model:k,linkTarget:this.linkTarget,expanded:this.storage.get("expandedHdas")[j],selectable:this.selecting,purgeAllowed:this.purgeAllowed,hasUser:this.model.ownedByCurrUser(),logger:this.logger,tagsEditorShown:(this.tagsEditor&&!this.tagsEditor.hidden),annotationEditorShown:(this.annotationEditor&&!this.annotationEditor.hidden)})}else{if(m==="dataset_collection"){l=new b.DatasetCollectionEditView({model:k,linkTarget:this.linkTarget,expanded:this.storage.get("expandedHdas")[j],hasUser:this.model.ownedByCurrUser(),logger:this.logger})}}this._setUpHdaListeners(l);return l},_setUpHdaListeners:function(k){var j=this;c.ReadOnlyHistoryPanel.prototype._setUpHdaListeners.call(this,k);k.on("selected",function(n,m){if(!m){return}var l=[];if((m.shiftKey)&&(j.lastSelectedViewId&&_.has(j.hdaViews,j.lastSelectedViewId))){var p=j.hdaViews[j.lastSelectedViewId];l=j.selectDatasetRange(n,p).map(function(q){return q.model.id})}else{var o=n.model.id;j.lastSelectedViewId=o;l=[o]}j.selectedHdaIds=_.union(j.selectedHdaIds,l)});k.on("de-selected",function(m,l){var n=m.model.id;j.selectedHdaIds=_.without(j.selectedHdaIds,n)})},toggleHDATagEditors:function(j){var k=arguments;_.each(this.hdaViews,function(l){if(l.tagsEditor){l.tagsEditor.toggle.apply(l.tagsEditor,k)}})},toggleHDAAnnotationEditors:function(j){var k=arguments;_.each(this.hdaViews,function(l){if(l.annotationEditor){l.annotationEditor.toggle.apply(l.annotationEditor,k)}})},removeHdaView:function(k){if(!k){return}var j=this;k.$el.fadeOut(j.fxSpeed,function(){k.off();k.remove();delete j.hdaViews[k.model.id];if(_.isEmpty(j.hdaViews)){j.trigger("empty-history",j);j._renderEmptyMsg()}})},events:_.extend(_.clone(c.ReadOnlyHistoryPanel.prototype.events),{"click .history-select-btn":"toggleSelectors","click .history-select-all-datasets-btn":"selectAllDatasets","click .history-deselect-all-datasets-btn":"deselectAllDatasets"}),updateHistoryDiskSize:function(){this.$el.find(".history-size").text(this.model.get("nice_size"))},showSelectors:function(j){j=(j!==undefined)?(j):(this.fxSpeed);this.selecting=true;this.$(".history-dataset-actions").slideDown(j);_.each(this.hdaViews,function(k){k.showSelector()});this.selectedHdaIds=[];this.lastSelectedViewId=null},hideSelectors:function(j){j=(j!==undefined)?(j):(this.fxSpeed);this.selecting=false;this.$(".history-dataset-actions").slideUp(j);_.each(this.hdaViews,function(k){k.hideSelector()});this.selectedHdaIds=[];this.lastSelectedViewId=null},toggleSelectors:function(){if(!this.selecting){this.showSelectors()}else{this.hideSelectors()}},selectAllDatasets:function(j){_.each(this.hdaViews,function(k){k.select(j)})},deselectAllDatasets:function(j){this.lastSelectedViewId=null;_.each(this.hdaViews,function(k){k.deselect(j)})},selectDatasetRange:function(l,k){var j=this.hdaViewRange(l,k);_.each(j,function(m){m.select()});return j},getSelectedHdaViews:function(){return _.filter(this.hdaViews,function(j){return j.selected})},getSelectedHdaCollection:function(){return new g.HistoryContents(_.map(this.getSelectedHdaViews(),function(j){return j.model}),{historyId:this.model.id})},toString:function(){return"HistoryPanel("+((this.model)?(this.model.get("name")):(""))+")"}});return{HistoryPanel:e}}); \ No newline at end of file diff -r 83a3792548db71c8bf69e278bf745bc5df123db7 -r 50a273de6cd76b770eb78861fee2b0a97621fa3b static/scripts/packed/viz/trackster/tracks.js --- a/static/scripts/packed/viz/trackster/tracks.js +++ b/static/scripts/packed/viz/trackster/tracks.js @@ -1,1 +1,1 @@ -define(["libs/underscore","viz/visualization","viz/trackster/util","viz/trackster/slotting","viz/trackster/painters","viz/trackster/filters","mvc/data","mvc/tools","utils/config"],function(aa,w,j,s,J,h,W,P,R){var o=aa.extend;var l={};var i=function(ab,ac){l[ab.attr("id")]=ac};var k=function(ab,ac,ae,ad){ae=".group";l[ab.attr("id")]=ad;ab.bind("drag",{handle:"."+ac,relative:true},function(am,an){var al=$(this),aq=$(this).parent(),ai=aq.children(".track,.group"),ak=l[$(this).attr("id")],ah,ag,ao,af,aj;ag=$(this).parents(ae);if(ag.length!==0){ao=ag.position().top;af=ao+ag.outerHeight();var ap=l[ag.attr("id")];if(an.offsetY<ao){$(this).insertBefore(ag);ap.remove_drawable(ak);ap.container.add_drawable_before(ak,ap);return}else{if(an.offsetY>af){$(this).insertAfter(ag);ap.remove_drawable(ak);ap.container.add_drawable(ak);return}}}ag=null;for(aj=0;aj<ai.length;aj++){ah=$(ai.get(aj));ao=ah.position().top;af=ao+ah.outerHeight();if(ah.is(ae)&&this!==ah.get(0)&&an.offsetY>=ao&&an.offsetY<=af){if(an.offsetY-ao<af-an.offsetY){ah.find(".content-div").prepend(this)}else{ah.find(".content-div").append(this)}if(ak.container){ak.container.remove_drawable(ak)}l[ah.attr("id")].add_drawable(ak);return}}for(aj=0;aj<ai.length;aj++){ah=$(ai.get(aj));if(an.offsetY<ah.position().top&&!(ah.hasClass("reference-track")||ah.hasClass("intro"))){break}}if(aj===ai.length){if(this!==ai.get(aj-1)){aq.append(this);l[aq.attr("id")].move_drawable(ak,aj)}}else{if(this!==ai.get(aj)){$(this).insertBefore(ai.get(aj));l[aq.attr("id")].move_drawable(ak,(an.deltaY>0?aj-1:aj))}}}).bind("dragstart",function(){$(this).addClass("dragging")}).bind("dragend",function(){$(this).removeClass("dragging")})};var D=20,z=100,G=12000,Q=400,I=5000,v=100,m="Cannot display dataset due to an error. ",H="A converter for this dataset is not installed. Please check your datatypes_conf.xml file.",E="No data for this chrom/contig.",u="Preparing data. This can take a while for a large dataset. If the visualization is saved and closed, preparation will continue in the background.",x="Tool cannot be rerun: ",a="Loading data...",T="Ready for display",O=10,F=20,A=["Histogram","Line","Filled","Intensity"];function U(ac,ab){if(!ab){ab=0}var ad=Math.pow(10,ab);return Math.round(ac*ad)/ad}var p=function(ac,ab,ae){if(!p.id_counter){p.id_counter=0}this.id=p.id_counter++;this.view=ac;this.container=ab;this.drag_handle_class=ae.drag_handle_class;this.is_overview=false;this.action_icons={};this.config=R.ConfigSettingCollection.from_models_and_saved_values(this.config_params,ae.prefs);if(!this.config.get_value("name")){this.config.set_value("name",ae.name)}if(this.config_onchange){this.config.on("change",this.config_onchange,this)}this.container_div=this.build_container_div();this.header_div=this.build_header_div();if(this.header_div){this.container_div.append(this.header_div);this.icons_div=$("<div/>").addClass("track-icons").hide().appendTo(this.header_div);this.build_action_icons(this.action_icons_def);this.header_div.append($("<div style='clear: both'/>"));this.header_div.dblclick(function(af){af.stopPropagation()});var ad=this;this.container_div.hover(function(){ad.icons_div.show()},function(){ad.icons_div.hide()});$("<div style='clear: both'/>").appendTo(this.container_div)}};p.prototype.action_icons_def=[{name:"toggle_icon",title:"Hide/show content",css_class:"toggle",on_click_fn:function(ab){if(ab.config.get_value("content_visible")){ab.action_icons.toggle_icon.addClass("toggle-expand").removeClass("toggle");ab.hide_contents();ab.config.set_value("content_visible",false)}else{ab.action_icons.toggle_icon.addClass("toggle").removeClass("toggle-expand");ab.config.set_value("content_visible",true);ab.show_contents()}}},{name:"settings_icon",title:"Edit settings",css_class:"gear",on_click_fn:function(ac){var ab=new R.ConfigSettingCollectionView({collection:ac.config});ab.render_in_modal("Configure Track")}},{name:"remove_icon",title:"Remove",css_class:"remove-icon",on_click_fn:function(ab){$(".tooltip").remove();ab.remove()}}];o(p.prototype,{config_params:[{key:"name",label:"Name",type:"text",default_value:""},{key:"content_visible",type:"bool",default_value:true,hidden:true}],config_onchange:function(){},init:function(){},changed:function(){this.view.changed()},can_draw:function(){if(this.enabled&&this.config.get_value("content_visible")){return true}return false},request_draw:function(){},_draw:function(ab){},to_dict:function(){},set_name:function(ab){this.old_name=this.config.get_value("name");this.config.set_value("name",ab);this.name_div.text(ab)},revert_name:function(){if(this.old_name){this.config.set_value("name",this.old_name);this.name_div.text(this.old_name)}},remove:function(){this.changed();this.container.remove_drawable(this);var ab=this.view;this.container_div.hide(0,function(){$(this).remove();ab.update_intro_div()})},build_container_div:function(){},build_header_div:function(){},add_action_icon:function(ac,ah,ag,af,ab,ae){var ad=this;this.action_icons[ac]=$("<a/>").attr("title",ah).addClass("icon-button").addClass(ag).tooltip().click(function(){af(ad)}).appendTo(this.icons_div);if(ae){this.action_icons[ac].hide()}},build_action_icons:function(ab){var ad;for(var ac=0;ac<ab.length;ac++){ad=ab[ac];this.add_action_icon(ad.name,ad.title,ad.css_class,ad.on_click_fn,ad.prepend,ad.hide)}},update_icons:function(){},hide_contents:function(){},show_contents:function(){},get_drawables:function(){}});var y=function(ac,ab,ad){p.call(this,ac,ab,ad);this.obj_type=ad.obj_type;this.drawables=[]};o(y.prototype,p.prototype,{unpack_drawables:function(ad){this.drawables=[];var ac;for(var ab=0;ab<ad.length;ab++){ac=n(ad[ab],this.view,this);this.add_drawable(ac)}},init:function(){for(var ab=0;ab<this.drawables.length;ab++){this.drawables[ab].init()}},_draw:function(ab){for(var ac=0;ac<this.drawables.length;ac++){this.drawables[ac]._draw(ab)}},to_dict:function(){var ac=[];for(var ab=0;ab<this.drawables.length;ab++){ac.push(this.drawables[ab].to_dict())}return{prefs:this.config.to_key_value_dict(),obj_type:this.obj_type,drawables:ac}},add_drawable:function(ab){this.drawables.push(ab);ab.container=this;this.changed()},add_drawable_before:function(ad,ab){this.changed();var ac=this.drawables.indexOf(ab);if(ac!==-1){this.drawables.splice(ac,0,ad);return true}return false},replace_drawable:function(ad,ab,ac){var ae=this.drawables.indexOf(ad);if(ae!==-1){this.drawables[ae]=ab;if(ac){ad.container_div.replaceWith(ab.container_div)}this.changed()}return ae},remove_drawable:function(ac){var ab=this.drawables.indexOf(ac);if(ab!==-1){this.drawables.splice(ab,1);ac.container=null;this.changed();return true}return false},move_drawable:function(ac,ad){var ab=this.drawables.indexOf(ac);if(ab!==-1){this.drawables.splice(ab,1);this.drawables.splice(ad,0,ac);this.changed();return true}return false},get_drawables:function(){return this.drawables},get_tracks:function(ae){var ab=this.drawables.slice(0),ac=[],ad;while(ab.length!==0){ad=ab.shift();if(ad instanceof ae){ac.push(ad)}else{if(ad.drawables){ab=ab.concat(ad.drawables)}}}return ac}});var N=function(ac,ab,ae){o(ae,{obj_type:"DrawableGroup",drag_handle_class:"group-handle"});y.call(this,ac,ab,ae);this.content_div=$("<div/>").addClass("content-div").attr("id","group_"+this.id+"_content_div").appendTo(this.container_div);i(this.container_div,this);i(this.content_div,this);k(this.container_div,this.drag_handle_class,".group",this);this.filters_manager=new h.FiltersManager(this);this.header_div.after(this.filters_manager.parent_div);this.saved_filters_managers=[];if("drawables" in ae){this.unpack_drawables(ae.drawables)}if("filters" in ae){var ad=this.filters_manager;this.filters_manager=new h.FiltersManager(this,ae.filters);ad.parent_div.replaceWith(this.filters_manager.parent_div);if(ae.filters.visible){this.setup_multitrack_filtering()}}};o(N.prototype,p.prototype,y.prototype,{action_icons_def:[p.prototype.action_icons_def[0],p.prototype.action_icons_def[1],{name:"composite_icon",title:"Show composite track",css_class:"layers-stack",on_click_fn:function(ab){$(".tooltip").remove();ab.show_composite_track()}},{name:"filters_icon",title:"Filters",css_class:"filters-icon",on_click_fn:function(ab){if(ab.filters_manager.visible()){ab.filters_manager.clear_filters();ab._restore_filter_managers()}else{ab.setup_multitrack_filtering();ab.request_draw({clear_tile_cache:true})}ab.filters_manager.toggle()}},p.prototype.action_icons_def[2]],build_container_div:function(){var ab=$("<div/>").addClass("group").attr("id","group_"+this.id);if(this.container){this.container.content_div.append(ab)}return ab},build_header_div:function(){var ab=$("<div/>").addClass("track-header");ab.append($("<div/>").addClass(this.drag_handle_class));this.name_div=$("<div/>").addClass("track-name").text(this.config.get_value("name")).appendTo(ab);return ab},hide_contents:function(){this.tiles_div.hide()},show_contents:function(){this.tiles_div.show();this.request_draw()},update_icons:function(){var ad=this.drawables.length;if(ad===0){this.action_icons.composite_icon.hide();this.action_icons.filters_icon.hide()}else{if(ad===1){if(this.drawables[0] instanceof e){this.action_icons.composite_icon.show()}this.action_icons.filters_icon.hide()}else{var ak,aj,ah,an=true,af=this.drawables[0].get_type(),ab=0;for(ak=0;ak<ad;ak++){ah=this.drawables[ak];if(ah.get_type()!==af){can_composite=false;break}if(ah instanceof c){ab++}}if(an&&this.drawables[0] instanceof g){this.action_icons.composite_icon.show()}else{this.action_icons.composite_icon.hide();$(".tooltip").remove()}if(ab>1&&ab===this.drawables.length){var ao={},ac;ah=this.drawables[0];for(aj=0;aj<ah.filters_manager.filters.length;aj++){ac=ah.filters_manager.filters[aj];ao[ac.name]=[ac]}for(ak=1;ak<this.drawables.length;ak++){ah=this.drawables[ak];for(aj=0;aj<ah.filters_manager.filters.length;aj++){ac=ah.filters_manager.filters[aj];if(ac.name in ao){ao[ac.name].push(ac)}}}this.filters_manager.remove_all();var ae,ag,ai,al;for(var am in ao){ae=ao[am];if(ae.length===ab){ag=new h.NumberFilter({name:ae[0].name,index:ae[0].index});this.filters_manager.add_filter(ag)}}if(this.filters_manager.filters.length>0){this.action_icons.filters_icon.show()}else{this.action_icons.filters_icon.hide()}}else{this.action_icons.filters_icon.hide()}}}},_restore_filter_managers:function(){for(var ab=0;ab<this.drawables.length;ab++){this.drawables[ab].filters_manager=this.saved_filters_managers[ab]}this.saved_filters_managers=[]},setup_multitrack_filtering:function(){if(this.filters_manager.filters.length>0){this.saved_filters_managers=[];for(var ab=0;ab<this.drawables.length;ab++){drawable=this.drawables[ab];this.saved_filters_managers.push(drawable.filters_manager);drawable.filters_manager=this.filters_manager}}this.filters_manager.init_filters()},show_composite_track:function(){var ac=new e(this.view,this.view,{name:this.config.get_value("name"),drawables:this.drawables});var ab=this.container.replace_drawable(this,ac,true);ac.request_draw()},add_drawable:function(ab){y.prototype.add_drawable.call(this,ab);this.update_icons()},remove_drawable:function(ab){y.prototype.remove_drawable.call(this,ab);this.update_icons()},to_dict:function(){if(this.filters_manager.visible()){this._restore_filter_managers()}var ab=o(y.prototype.to_dict.call(this),{filters:this.filters_manager.to_dict()});if(this.filters_manager.visible()){this.setup_multitrack_filtering()}return ab},request_draw:function(ab){aa.each(this.drawables,function(ac){ac.request_draw(ab)})}});var X=Backbone.View.extend({initialize:function(ab){o(ab,{obj_type:"View"});y.call(this,"View",ab.container,ab);this.chrom=null;this.vis_id=ab.vis_id;this.dbkey=ab.dbkey;this.label_tracks=[];this.tracks_to_be_redrawn=[];this.max_low=0;this.max_high=0;this.zoom_factor=3;this.min_separation=30;this.has_changes=false;this.load_chroms_deferred=null;this.render();this.canvas_manager=new w.CanvasManager(this.container.get(0).ownerDocument);this.reset();this.config=R.ConfigSettingCollection.from_models_and_saved_values([{key:"name",label:"Name",type:"text",default_value:""},{key:"a_color",label:"A Color",type:"color",default_value:"#FF0000"},{key:"c_color",label:"C Color",type:"color",default_value:"#00FF00"},{key:"g_color",label:"G Color",type:"color",default_value:"#0000FF"},{key:"t_color",label:"T Color",type:"color",default_value:"#FF00FF"},{key:"n_color",label:"N Color",type:"color",default_value:"#AAAAAA"}],{name:ab.name})},render:function(){this.requested_redraw=false;var ad=this.container,ab=this;this.top_container=$("<div/>").addClass("top-container").appendTo(ad);this.browser_content_div=$("<div/>").addClass("content").appendTo(ad);this.bottom_container=$("<div/>").addClass("bottom-container").appendTo(ad);this.top_labeltrack=$("<div/>").addClass("top-labeltrack").appendTo(this.top_container);this.viewport_container=$("<div/>").addClass("viewport-container").attr("id","viewport-container").appendTo(this.browser_content_div);this.content_div=this.viewport_container;i(this.viewport_container,ab);this.intro_div=$("<div/>").addClass("intro").appendTo(this.viewport_container).hide();var ae=$("<div/>").text("Add Datasets to Visualization").addClass("action-button").appendTo(this.intro_div).click(function(){w.select_datasets(galaxy_config.root+"visualization/list_current_history_datasets",galaxy_config.root+"api/datasets",{"f-dbkey":ab.dbkey},function(af){aa.each(af,function(ag){ab.add_drawable(n(ag,ab,ab))})})});this.nav_labeltrack=$("<div/>").addClass("nav-labeltrack").appendTo(this.bottom_container);this.nav_container=$("<div/>").addClass("trackster-nav-container").prependTo(this.top_container);this.nav=$("<div/>").addClass("trackster-nav").appendTo(this.nav_container);this.overview=$("<div/>").addClass("overview").appendTo(this.bottom_container);this.overview_viewport=$("<div/>").addClass("overview-viewport").appendTo(this.overview);this.overview_close=$("<a/>").attr("title","Close overview").addClass("icon-button overview-close tooltip").hide().appendTo(this.overview_viewport);this.overview_highlight=$("<div/>").addClass("overview-highlight").hide().appendTo(this.overview_viewport);this.overview_box_background=$("<div/>").addClass("overview-boxback").appendTo(this.overview_viewport);this.overview_box=$("<div/>").addClass("overview-box").appendTo(this.overview_viewport);this.default_overview_height=this.overview_box.height();this.nav_controls=$("<div/>").addClass("nav-controls").appendTo(this.nav);this.chrom_select=$("<select/>").attr({name:"chrom"}).addClass("chrom-nav").append("<option value=''>Loading</option>").appendTo(this.nav_controls);var ac=function(af){if(af.type==="focusout"||(af.keyCode||af.which)===13||(af.keyCode||af.which)===27){if((af.keyCode||af.which)!==27){ab.go_to($(this).val())}$(this).hide();$(this).val("");ab.location_span.show();ab.chrom_select.show()}af.stopPropagation()};this.nav_input=$("<input/>").addClass("nav-input").hide().bind("keyup focusout",ac).appendTo(this.nav_controls);this.location_span=$("<span/>").addClass("location").attr("title","Click to change location").tooltip({placement:"bottom"}).appendTo(this.nav_controls);this.location_span.click(function(){ab.location_span.hide();ab.chrom_select.hide();ab.nav_input.val(ab.chrom+":"+ab.low+"-"+ab.high);ab.nav_input.css("display","inline-block");ab.nav_input.select();ab.nav_input.focus();ab.nav_input.autocomplete({source:function(ah,af){var ai=[],ag=$.map(ab.get_tracks(c),function(aj){return aj.data_manager.search_features(ah.term).success(function(ak){ai=ai.concat(ak)})});$.when.apply($,ag).done(function(){af($.map(ai,function(aj){return{label:aj[0],value:aj[1]}}))})},minLength:2})});if(this.vis_id!==undefined){this.hidden_input=$("<input/>").attr("type","hidden").val(this.vis_id).appendTo(this.nav_controls)}this.zo_link=$("<a/>").attr("id","zoom-out").attr("title","Zoom out").tooltip({placement:"bottom"}).click(function(){ab.zoom_out()}).appendTo(this.nav_controls);this.zi_link=$("<a/>").attr("id","zoom-in").attr("title","Zoom in").tooltip({placement:"bottom"}).click(function(){ab.zoom_in()}).appendTo(this.nav_controls);this.load_chroms_deferred=this.load_chroms({low:0});this.chrom_select.bind("change",function(){ab.change_chrom(ab.chrom_select.val())});this.browser_content_div.click(function(af){$(this).find("input").trigger("blur")});this.browser_content_div.bind("dblclick",function(af){ab.zoom_in(af.pageX,this.viewport_container)});this.overview_box.bind("dragstart",function(af,ag){this.current_x=ag.offsetX}).bind("drag",function(af,ah){var ai=ah.offsetX-this.current_x;this.current_x=ah.offsetX;var ag=Math.round(ai/ab.viewport_container.width()*(ab.max_high-ab.max_low));ab.move_delta(-ag)});this.overview_close.click(function(){ab.reset_overview()});this.viewport_container.bind("draginit",function(af,ag){if(af.clientX>ab.viewport_container.width()-16){return false}}).bind("dragstart",function(af,ag){ag.original_low=ab.low;ag.current_height=af.clientY;ag.current_x=ag.offsetX}).bind("drag",function(ah,aj){var af=$(this);var ak=aj.offsetX-aj.current_x;var ag=af.scrollTop()-(ah.clientY-aj.current_height);af.scrollTop(ag);aj.current_height=ah.clientY;aj.current_x=aj.offsetX;var ai=Math.round(ak/ab.viewport_container.width()*(ab.high-ab.low));ab.move_delta(ai)});this.top_labeltrack.bind("dragstart",function(af,ag){return $("<div/>").addClass("zoom-area").css("height",ab.browser_content_div.height()+ab.top_labeltrack.height()+ab.nav_labeltrack.height()+1).appendTo($(this))}).bind("drag",function(aj,ak){$(ak.proxy).css({left:Math.min(aj.pageX,ak.startX)-ab.container.offset().left,width:Math.abs(aj.pageX-ak.startX)});var ag=Math.min(aj.pageX,ak.startX)-ab.container.offset().left,af=Math.max(aj.pageX,ak.startX)-ab.container.offset().left,ai=(ab.high-ab.low),ah=ab.viewport_container.width();ab.update_location(Math.round(ag/ah*ai)+ab.low,Math.round(af/ah*ai)+ab.low)}).bind("dragend",function(ak,al){var ag=Math.min(ak.pageX,al.startX),af=Math.max(ak.pageX,al.startX),ai=(ab.high-ab.low),ah=ab.viewport_container.width(),aj=ab.low;ab.low=Math.round(ag/ah*ai)+aj;ab.high=Math.round(af/ah*ai)+aj;$(al.proxy).remove();ab.request_redraw()});this.add_label_track(new V(this,{content_div:this.top_labeltrack}));this.add_label_track(new V(this,{content_div:this.nav_labeltrack}));$(window).bind("resize",function(){if(this.resize_timer){clearTimeout(this.resize_timer)}this.resize_timer=setTimeout(function(){ab.resize_window()},500)});$(document).bind("redraw",function(){ab.redraw()});this.reset();$(window).trigger("resize")},get_base_color:function(ab){return this.config.get_value(ab.toLowerCase()+"_color")||this.config.get_value("n_color")}});o(X.prototype,y.prototype,{changed:function(){this.has_changes=true},update_intro_div:function(){if(this.drawables.length===0){this.intro_div.show()}else{this.intro_div.hide()}},trigger_navigate:function(ac,ae,ab,af){if(this.timer){clearTimeout(this.timer)}if(af){var ad=this;this.timer=setTimeout(function(){ad.trigger("navigate",ac+":"+ae+"-"+ab)},500)}else{view.trigger("navigate",ac+":"+ae+"-"+ab)}},update_location:function(ab,ad){this.location_span.text(commatize(ab)+" - "+commatize(ad));this.nav_input.val(this.chrom+":"+commatize(ab)+"-"+commatize(ad));var ac=view.chrom_select.val();if(ac!==""){this.trigger_navigate(ac,view.low,view.high,true)}},load_chroms:function(ad){ad.num=v;var ab=this,ac=$.Deferred();$.ajax({url:galaxy_config.root+"api/genomes/"+this.dbkey,data:ad,dataType:"json",success:function(af){if(af.chrom_info.length===0){return}if(af.reference){var ag=new B(ab);ab.add_label_track(ag);ab.reference_track=ag}ab.chrom_data=af.chrom_info;var aj='<option value="">Select Chrom/Contig</option>';for(var ai=0,ae=ab.chrom_data.length;ai<ae;ai++){var ah=ab.chrom_data[ai].chrom;aj+='<option value="'+ah+'">'+ah+"</option>"}if(af.prev_chroms){aj+='<option value="previous">Previous '+v+"</option>"}if(af.next_chroms){aj+='<option value="next">Next '+v+"</option>"}ab.chrom_select.html(aj);ab.chrom_start_index=af.start_index;ac.resolve(af.chrom_info)},error:function(){alert("Could not load chroms for this dbkey: "+ab.dbkey)}});return ac},change_chrom:function(ag,ac,ai){var ad=this;if(!ad.chrom_data){ad.load_chroms_deferred.then(function(){ad.change_chrom(ag,ac,ai)});return}if(!ag||ag==="None"){return}if(ag==="previous"){ad.load_chroms({low:this.chrom_start_index-v});return}if(ag==="next"){ad.load_chroms({low:this.chrom_start_index+v});return}var ah=$.grep(ad.chrom_data,function(aj,ak){return aj.chrom===ag})[0];if(ah===undefined){ad.load_chroms({chrom:ag},function(){ad.change_chrom(ag,ac,ai)});return}else{if(ag!==ad.chrom){ad.chrom=ag;ad.chrom_select.val(ad.chrom);ad.max_high=ah.len-1;ad.reset();for(var af=0,ab=ad.drawables.length;af<ab;af++){var ae=ad.drawables[af];if(ae.init){ae.init()}}if(ad.reference_track){ad.reference_track.init()}}if(ac===undefined&&ai===undefined){ad.low=0;ad.high=ad.max_high}else{ad.low=(ac!==undefined?Math.max(ac,0):0);if(ai===undefined){ad.low=Math.max(ad.low-15,0);ad.high=ad.low+30}else{ad.high=Math.min(ai,ad.max_high)}}ad.reset_overview();ad.request_redraw()}},go_to:function(af){af=af.replace(/,/g,"");af=af.replace(/:|\-/g," ");var ac=af.split(/\s+/),ae=ac[0],ad=(ac[1]?parseInt(ac[1],10):undefined),ab=(ac[2]?parseInt(ac[2],10):undefined);this.change_chrom(ae,ad,ab)},move_fraction:function(ad){var ab=this;var ac=ab.high-ab.low;this.move_delta(ad*ac)},move_delta:function(ae){var ab=this;var ad=ab.high-ab.low;if(ab.low-ae<ab.max_low){ab.low=ab.max_low;ab.high=ab.max_low+ad}else{if(ab.high-ae>ab.max_high){ab.high=ab.max_high;ab.low=ab.max_high-ad}else{ab.high-=ae;ab.low-=ae}}ab.request_redraw({data_fetch:false});if(this.redraw_on_move_fn){clearTimeout(this.redraw_on_move_fn)}this.redraw_on_move_fn=setTimeout(function(){ab.request_redraw()},200);var ac=ab.chrom_select.val();this.trigger_navigate(ac,ab.low,ab.high,true)},add_drawable:function(ab){y.prototype.add_drawable.call(this,ab);ab.init();this.changed();this.update_intro_div()},add_label_track:function(ab){ab.view=this;ab.init();this.label_tracks.push(ab)},remove_drawable:function(ad,ac){y.prototype.remove_drawable.call(this,ad);if(ac){var ab=this;ad.container_div.hide(0,function(){$(this).remove();ab.update_intro_div()})}},reset:function(){this.low=this.max_low;this.high=this.max_high;this.viewport_container.find(".yaxislabel").remove()},request_redraw:function(ac,ad){var ab=this,ae=(ad?[ad]:ab.drawables);aa.each(ae,function(af){var ag=aa.find(ab.tracks_to_be_redrawn,function(ah){return ah[0]===af});if(ag){ag[1]=ac}else{ab.tracks_to_be_redrawn.push([af,ac])}});if(!this.requested_redraw){requestAnimationFrame(function(){ab._redraw()});this.requested_redraw=true}},_redraw:function(){this.requested_redraw=false;var ab=this.low,af=this.high;if(ab<this.max_low){ab=this.max_low}if(af>this.max_high){af=this.max_high}var ac=this.high-this.low;if(this.high!==0&&ac<this.min_separation){af=ab+this.min_separation}this.low=Math.floor(ab);this.high=Math.ceil(af);this.update_location(this.low,this.high);this.resolution_px_b=this.viewport_container.width()/(this.high-this.low);var ae=(this.low/(this.max_high-this.max_low)*this.overview_viewport.width())||0;var ag=((this.high-this.low)/(this.max_high-this.max_low)*this.overview_viewport.width())||0;var ad=13;this.overview_box.css({left:ae,width:Math.max(ad,ag)}).show();if(ag<ad){this.overview_box.css("left",ae-(ad-ag)/2)}if(this.overview_highlight){this.overview_highlight.css({left:ae,width:ag})}aa.each(this.tracks_to_be_redrawn,function(aj){var ah=aj[0],ai=aj[1];if(ah){ah._draw(ai)}});this.tracks_to_be_redrawn=[];aa.each(this.label_tracks,function(ah){ah._draw()})},zoom_in:function(ac,ad){if(this.max_high===0||this.high-this.low<=this.min_separation){return}var ae=this.high-this.low,af=ae/2+this.low,ab=(ae/this.zoom_factor)/2;if(ac){af=ac/this.viewport_container.width()*(this.high-this.low)+this.low}this.low=Math.round(af-ab);this.high=Math.round(af+ab);this.changed();this.request_redraw()},zoom_out:function(){if(this.max_high===0){return}var ac=this.high-this.low,ad=ac/2+this.low,ab=(ac*this.zoom_factor)/2;this.low=Math.round(ad-ab);this.high=Math.round(ad+ab);this.changed();this.request_redraw()},resize_viewport:function(){this.viewport_container.height(this.container.height()-this.top_container.height()-this.bottom_container.height())},resize_window:function(){this.resize_viewport();this.request_redraw()},set_overview:function(ad){if(this.overview_drawable){if(this.overview_drawable.dataset.id===ad.dataset.id){return}this.overview_viewport.find(".track").remove()}var ac=ad.copy({content_div:this.overview_viewport}),ab=this;ac.header_div.hide();ac.is_overview=true;ab.overview_drawable=ac;this.overview_drawable.postdraw_actions=function(){ab.overview_highlight.show().height(ab.overview_drawable.content_div.height());ab.overview_viewport.height(ab.overview_drawable.content_div.height()+ab.overview_box.outerHeight());ab.overview_close.show();ab.resize_window()};ab.overview_drawable.request_draw();this.changed()},reset_overview:function(){$(".tooltip").remove();this.overview_viewport.find(".track-tile").remove();this.overview_viewport.height(this.default_overview_height);this.overview_box.height(this.default_overview_height);this.overview_close.hide();this.overview_highlight.hide();view.resize_window();view.overview_drawable=null}});var q=P.Tool.extend({defaults:{track:null},initialize:function(ab){P.Tool.prototype.initialize.call(this,ab);var ac=true;if(ab.tool_state!==undefined&&ab.tool_state.hidden!==undefined){ac=ab.tool_state.hidden}this.set("hidden",ac);this.remove_inputs(["data","hidden_data","conditional"])},state_dict:function(ab){return aa.extend(this.get_inputs_dict(),{hidden:!this.is_visible()})}});var t=Backbone.View.extend({events:{"change :input":"update_value"},render:function(){var ad=this.$el.addClass("param-row"),ae=this.model;var ab=$("<div>").addClass("param-label").text(ae.get("label")).appendTo(ad);var ac=$("<div/>").addClass("param-input").html(ae.get("html")).appendTo(ad);ac.find(":input").val(ae.get("value"));$("<div style='clear: both;'/>").appendTo(ad)},update_value:function(ab){this.model.set_value($(ab.target).val())}});var Z=Backbone.View.extend({initialize:function(ab){this.model.on("change:hidden",this.set_visible,this)},render:function(){var ac=this;tool=this.model,parent_div=this.$el.addClass("dynamic-tool").hide();parent_div.bind("drag",function(ag){ag.stopPropagation()}).click(function(ag){ag.stopPropagation()}).bind("dblclick",function(ag){ag.stopPropagation()}).keydown(function(ag){ag.stopPropagation()});var ad=$("<div class='tool-name'>").appendTo(parent_div).text(tool.get("name"));tool.get("inputs").each(function(ah){var ag=new t({model:ah});ag.render();parent_div.append(ag.$el)});parent_div.find("input").click(function(){$(this).select()});var ae=$("<div>").addClass("param-row").appendTo(parent_div);var af=$("<input type='submit'>").attr("value","Run on complete dataset").appendTo(ae);var ab=$("<input type='submit'>").attr("value","Run on visible region").appendTo(ae);ab.click(function(){ac.run_on_region()});af.click(function(){ac.run_on_dataset()});if(tool.is_visible()){this.$el.show()}},set_visible:function(){if(this.model.is_visible()){this.$el.show()}else{this.$el.hide()}},update_params:function(){for(var ab=0;ab<this.params.length;ab++){this.params[ab].update_value()}},run_on_dataset:function(){var ab=this.model;this.run({target_dataset_id:this.model.get("track").dataset.id,action:"rerun",tool_id:ab.id},null,function(ac){Galaxy.modal.show({title:ab.get("name")+" is Running",body:ab.get("name")+" is running on the complete dataset. Tool outputs are in dataset's history.",buttons:{Close:function(){Galaxy.modal.hide()}}})})},run_on_region:function(){var ac=this.model.get("track"),af=this.model,ah=new w.GenomeRegion({chrom:ac.view.chrom,start:ac.view.low,end:ac.view.high}),ai={target_dataset_id:ac.dataset.id,action:"rerun",tool_id:af.id,regions:[ah.toJSON()]},ag=ac,ak=af.get("name")+ag.tool_region_and_parameters_str(ah),ab;if(ag.container===view){var aj=new N(view,view,{name:ac.config.get_value("name")});var ae=ag.container.replace_drawable(ag,aj,false);aj.container_div.insertBefore(ag.view.content_div.children()[ae]);aj.add_drawable(ag);ag.container_div.appendTo(aj.content_div);ab=aj}else{ab=ag.container}var ad=new ag.constructor(view,ab,{name:ak,hda_ldda:"hda"});ad.init_for_tool_data();ad.change_mode(ag.mode);ad.set_filters_manager(ag.filters_manager.copy(ad));ad.update_icons();ab.add_drawable(ad);ad.tiles_div.text("Starting job.");this.run(ai,ad,function(al){ad.set_dataset(new W.Dataset(al));ad.tiles_div.text("Running job.");ad.init()})},run:function(ab,ad,ae){ab.inputs=this.model.get_inputs_dict();var ac=new j.ServerStateDeferred({ajax_settings:{url:galaxy_config.root+"api/tools",data:JSON.stringify(ab),dataType:"json",contentType:"application/json",type:"POST"},interval:2000,success_fn:function(af){return af!=="pending"}});$.when(ac.go()).then(function(af){if(af==="no converter"){ad.container_div.addClass("error");ad.content_div.text(H)}else{if(af.error){ad.container_div.addClass("error");ad.content_div.text(x+af.message)}else{ae(af)}}})}});var C=function(ab,ac){J.Scaler.call(this,ac);this.filter=ab};C.prototype.gen_val=function(ab){if(this.filter.high===Number.MAX_VALUE||this.filter.low===-Number.MAX_VALUE||this.filter.low===this.filter.high){return this.default_val}return((parseFloat(ab[this.filter.index])-this.filter.low)/(this.filter.high-this.filter.low))};var b=function(ab,ae,af,ac,ad){this.track=ab;this.region=ae;this.low=ae.get("start");this.high=ae.get("end");this.w_scale=af;this.canvas=ac;this.html_elt=$("<div class='track-tile'/>").append(ac);this.data=ad;this.stale=false};b.prototype.predisplay_actions=function(){};var K=function(ab,ae,af,ac,ad){b.call(this,ab,ae,af,ac,ad)};K.prototype.predisplay_actions=function(){};var M=function(ad,ai,ak,ac,af,ag,al,ab,ah,ae,aj){b.call(this,ad,ai,ak,ac,af);this.mode=ag;this.all_slotted=ab;this.feature_mapper=ah;this.has_icons=false;this.incomplete_features=ae;this.seq_data=aj};o(M.prototype,b.prototype);M.prototype.predisplay_actions=function(){var ac=this,ab={};if(ac.mode!=="Pack"){return}$(this.html_elt).hover(function(){this.hovered=true;$(this).mousemove()},function(){this.hovered=false;$(this).parents(".track-content").children(".overlay").children(".feature-popup").remove()}).mousemove(function(an){if(!this.hovered){return}var ai=$(this).offset(),am=an.pageX-ai.left,al=an.pageY-ai.top,ar=ac.feature_mapper.get_feature_data(am,al),aj=(ar?ar[0]:null);$(this).parents(".track-content").children(".overlay").children(".feature-popup").each(function(){if(!aj||$(this).attr("id")!==aj.toString()){$(this).remove()}});if(ar){var ae=ab[aj];if(!ae){var ao={name:ar[3],start:ar[1],end:ar[2],strand:ar[4]},ah=ac.track.filters_manager.filters,ag;for(var ak=0;ak<ah.length;ak++){ag=ah[ak];ao[ag.name]=ar[ag.index]}ae=$("<div/>").attr("id",aj).addClass("feature-popup");var at=$("<table/>"),aq,ap,au;for(aq in ao){ap=ao[aq];au=$("<tr/>").appendTo(at);$("<th/>").appendTo(au).text(aq);$("<td/>").attr("align","left").appendTo(au).text(typeof(ap)==="number"?U(ap,2):ap)}ae.append($("<div class='feature-popup-inner'>").append(at));ab[aj]=ae}ae.appendTo($(this).parents(".track-content").children(".overlay"));var af=am+parseInt(ac.html_elt.css("left"),10)-ae.width()/2,ad=al+parseInt(ac.html_elt.css("top"),10)+7;ae.css("left",af+"px").css("top",ad+"px")}else{if(!an.isPropagationStopped()){an.stopPropagation();$(this).siblings().each(function(){$(this).trigger(an)})}}}).mouseleave(function(){$(this).parents(".track-content").children(".overlay").children(".feature-popup").remove()})};var f=function(ac,ab,ad){o(ad,{drag_handle_class:"draghandle"});p.call(this,ac,ab,ad);this.dataset=null;if(ad.dataset){this.dataset=(ad.dataset instanceof Backbone.Model?ad.dataset:new W.Dataset(ad.dataset))}this.dataset_check_type="converted_datasets_state";this.data_url_extra_params={};this.data_query_wait=("data_query_wait" in ad?ad.data_query_wait:I);this.data_manager=("data_manager" in ad?ad.data_manager:new w.GenomeDataManager({dataset:this.dataset,genome:new w.Genome({key:ac.dbkey,chroms_info:{chrom_info:ac.chrom_data}}),data_mode_compatible:this.data_and_mode_compatible,can_subset:this.can_subset}));this.min_height_px=16;this.max_height_px=800;this.visible_height_px=this.config.get_value("height");this.content_div=$("<div class='track-content'>").appendTo(this.container_div);if(this.container){this.container.content_div.append(this.container_div);if(!("resize" in ad)||ad.resize){this.add_resize_handle()}}};o(f.prototype,p.prototype,{action_icons_def:[{name:"mode_icon",title:"Set display mode",css_class:"chevron-expand",on_click_fn:function(){}},p.prototype.action_icons_def[0],{name:"overview_icon",title:"Set as overview",css_class:"application-dock-270",on_click_fn:function(ab){ab.view.set_overview(ab)}},p.prototype.action_icons_def[1],{name:"filters_icon",title:"Filters",css_class:"ui-slider-050",on_click_fn:function(ab){if(ab.filters_manager.visible()){ab.filters_manager.clear_filters()}else{ab.filters_manager.init_filters()}ab.filters_manager.toggle()}},{name:"tools_icon",title:"Tool",css_class:"hammer",on_click_fn:function(ab){ab.tool.toggle();if(ab.tool.is_visible()){ab.set_name(ab.config.get_value("name")+ab.tool_region_and_parameters_str())}else{ab.revert_name()}$(".tooltip").remove()}},{name:"param_space_viz_icon",title:"Tool parameter space visualization",css_class:"arrow-split",on_click_fn:function(ab){var ae='<strong>Tool</strong>: <%= track.tool.get("name") %><br/><strong>Dataset</strong>: <%= track.config.get_value("name") %><br/><strong>Region(s)</strong>: <select name="regions"><option value="cur">current viewing area</option><option value="bookmarks">bookmarks</option><option value="both">current viewing area and bookmarks</option></select>',ad=aa.template(ae,{track:ab});var ag=function(){Galaxy.modal.hide();$(window).unbind("keypress.check_enter_esc")},ac=function(){var ai=$('select[name="regions"] option:selected').val(),ak,ah=new w.GenomeRegion({chrom:view.chrom,start:view.low,end:view.high}),aj=aa.map($(".bookmark"),function(al){return new w.GenomeRegion({from_str:$(al).children(".position").text()})});if(ai==="cur"){ak=[ah]}else{if(ai==="bookmarks"){ak=aj}else{ak=[ah].concat(aj)}}Galaxy.modal.hide();window.location.href=galaxy_config.root+"visualization/sweepster?"+$.param({dataset_id:ab.dataset.id,hda_ldda:ab.dataset.get("hda_ldda"),regions:JSON.stringify(new Backbone.Collection(ak).toJSON())})},af=function(ah){if((ah.keyCode||ah.which)===27){ag()}else{if((ah.keyCode||ah.which)===13){ac()}}};Galaxy.modal.show({title:"Visualize tool parameter space and output from different parameter settings?",body:ad,buttons:{No:ag,Yes:ac}})}},p.prototype.action_icons_def[2]],can_draw:function(){return this.dataset&&p.prototype.can_draw.call(this)},build_container_div:function(){return $("<div/>").addClass("track").attr("id","track_"+this.id)},build_header_div:function(){var ab=$("<div class='track-header'/>");if(this.view.editor){this.drag_div=$("<div/>").addClass(this.drag_handle_class).appendTo(ab)}this.name_div=$("<div/>").addClass("track-name").appendTo(ab).text(this.config.get_value("name")).attr("id",this.config.get_value("name").replace(/\s+/g,"-").replace(/[^a-zA-Z0-9\-]/g,"").toLowerCase());return ab},set_dataset:function(ab){this.dataset=ab;this.data_manager.set("dataset",ab)},on_resize:function(){this.request_draw({clear_tile_cache:true})},add_resize_handle:function(){var ab=this;var ae=false;var ad=false;var ac=$("<div class='track-resize'>");$(ab.container_div).hover(function(){if(ab.config.get_value("content_visible")){ae=true;ac.show()}},function(){ae=false;if(!ad){ac.hide()}});ac.hide().bind("dragstart",function(af,ag){ad=true;ag.original_height=$(ab.content_div).height()}).bind("drag",function(ag,ah){var af=Math.min(Math.max(ah.original_height+ah.deltaY,ab.min_height_px),ab.max_height_px);$(ab.tiles_div).css("height",af);ab.visible_height_px=(ab.max_height_px===af?0:af);ab.on_resize()}).bind("dragend",function(af,ag){ab.tile_cache.clear();ad=false;if(!ae){ac.hide()}ab.config.set_value("height",ab.visible_height_px);ab.changed()}).appendTo(ab.container_div)},set_display_modes:function(ae,ah){this.display_modes=ae;this.mode=(ah?ah:(this.config&&this.config.get_value("mode")?this.config.get_value("mode"):this.display_modes[0]));this.action_icons.mode_icon.attr("title","Set display mode (now: "+this.mode+")");var ac=this,af={};for(var ad=0,ab=ac.display_modes.length;ad<ab;ad++){var ag=ac.display_modes[ad];af[ag]=function(ai){return function(){ac.change_mode(ai);ac.icons_div.show();ac.container_div.mouseleave(function(){ac.icons_div.hide()})}}(ag)}make_popupmenu(this.action_icons.mode_icon,af)},build_action_icons:function(){p.prototype.build_action_icons.call(this,this.action_icons_def);if(this.display_modes!==undefined){this.set_display_modes(this.display_modes)}},hide_contents:function(){this.tiles_div.hide();this.container_div.find(".yaxislabel, .track-resize").hide()},show_contents:function(){this.tiles_div.show();this.container_div.find(".yaxislabel, .track-resize").show();this.request_draw()},get_type:function(){if(this instanceof V){return"LabelTrack"}else{if(this instanceof B){return"ReferenceTrack"}else{if(this instanceof g){return"LineTrack"}else{if(this instanceof S){return"ReadTrack"}else{if(this instanceof Y){return"VariantTrack"}else{if(this instanceof e){return"CompositeTrack"}else{if(this instanceof c){return"FeatureTrack"}}}}}}}return""},show_message:function(ab){this.tiles_div.remove();return $("<span/>").addClass("message").html(ab).appendTo(this.content_div)},init:function(ad){var ac=this;ac.enabled=false;ac.tile_cache.clear();ac.data_manager.clear();ac.content_div.children().remove();ac.container_div.removeClass("nodata error pending");ac.tiles_div=$("<div/>").addClass("tiles").appendTo(ac.content_div);if(!ac.dataset.id){return}var ab=$.Deferred(),ae={hda_ldda:ac.dataset.get("hda_ldda"),data_type:this.dataset_check_type,chrom:ac.view.chrom,retry:ad};$.getJSON(this.dataset.url(),ae,function(af){if(!af||af==="error"||af.kind==="error"){ac.container_div.addClass("error");var ag=ac.show_message(m);if(af.message){ag.append($("<a href='javascript:void(0);'></a>").text("View error").click(function(){Galaxy.modal.show({title:"Trackster Error",body:"<pre>"+af.message+"</pre>",buttons:{Close:function(){Galaxy.modal.hide()}}})}));ag.append($("<span/>").text(" "));ag.append($("<a href='javascript:void(0);'></a>").text("Try again").click(function(){ac.init(true)}))}}else{if(af==="no converter"){ac.container_div.addClass("error");ac.show_message(H)}else{if(af==="no data"||(af.data!==undefined&&(af.data===null||af.data.length===0))){ac.container_div.addClass("nodata");ac.show_message(E)}else{if(af==="pending"){ac.container_div.addClass("pending");ac.show_message(u);setTimeout(function(){ac.init()},ac.data_query_wait)}else{if(af==="data"||af.status==="data"){if(af.valid_chroms){ac.valid_chroms=af.valid_chroms;ac.update_icons()}ac.tiles_div.text(T);if(ac.view.chrom){ac.tiles_div.text("");ac.tiles_div.css("height",ac.visible_height_px+"px");ac.enabled=true;$.when.apply($,ac.predraw_init()).done(function(){ab.resolve();ac.container_div.removeClass("nodata error pending");ac.request_draw()})}else{ab.resolve()}}}}}}});this.update_icons();return ab},predraw_init:function(){var ab=this;return $.getJSON(ab.dataset.url(),{data_type:"data",stats:true,chrom:ab.view.chrom,low:0,high:ab.view.max_high,hda_ldda:ab.dataset.get("hda_ldda")},function(ac){var ae=ac.data;if(ae&&ae.min&&ae.max){var ad=ae.min,af=ae.max;ad=Math.floor(Math.min(0,Math.max(ad,ae.mean-2*ae.sd)));af=Math.ceil(Math.max(0,Math.min(af,ae.mean+2*ae.sd)));ab.config.set_default_value("min_value",ad);ab.config.set_default_value("max_value",af);ab.config.set_value("min_value",ad);ab.config.set_value("max_value",af)}})},get_drawables:function(){return this}});var L=function(ad,ac,af){f.call(this,ad,ac,af);var ab=this;k(ab.container_div,ab.drag_handle_class,".group",ab);this.filters_manager=new h.FiltersManager(this,("filters" in af?af.filters:null));this.data_manager.set("filters_manager",this.filters_manager);this.filters_available=false;this.tool=(af.tool?new q(aa.extend(af.tool,{track:this,tool_state:af.tool_state})):null);this.tile_cache=new w.Cache(O);this.left_offset=0;if(this.header_div){this.set_filters_manager(this.filters_manager);if(this.tool){var ae=new Z({model:this.tool});ae.render();this.dynamic_tool_div=ae.$el;this.header_div.after(this.dynamic_tool_div)}}this.tiles_div=$("<div/>").addClass("tiles").appendTo(this.content_div);if(!this.config.get_value("content_visible")){this.tiles_div.hide()}this.overlay_div=$("<div/>").addClass("overlay").appendTo(this.content_div);if(af.mode){this.change_mode(af.mode)}};o(L.prototype,p.prototype,f.prototype,{action_icons_def:f.prototype.action_icons_def.concat([{name:"show_more_rows_icon",title:"To minimize track height, not all feature rows are displayed. Click to display more rows.",css_class:"exclamation",on_click_fn:function(ab){$(".tooltip").remove();ab.slotters[ab.view.resolution_px_b].max_rows*=2;ab.request_draw({clear_tile_cache:true})},hide:true}]),copy:function(ab){var ac=this.to_dict();o(ac,{data_manager:this.data_manager});var ad=new this.constructor(this.view,ab,ac);ad.change_mode(this.mode);ad.enabled=this.enabled;return ad},set_filters_manager:function(ab){this.filters_manager=ab;this.header_div.after(this.filters_manager.parent_div)},to_dict:function(){return{track_type:this.get_type(),dataset:{id:this.dataset.id,hda_ldda:this.dataset.get("hda_ldda")},prefs:this.config.to_key_value_dict(),mode:this.mode,filters:this.filters_manager.to_dict(),tool_state:(this.tool?this.tool.state_dict():{})}},set_min_max:function(){var ab=this;return $.getJSON(ab.dataset.url(),{data_type:"data",stats:true,chrom:ab.view.chrom,low:0,high:ab.view.max_high,hda_ldda:ab.dataset.get("hda_ldda")},function(ac){var ae=ac.data;if(isNaN(parseFloat(ab.config.get_value("min_value")))||isNaN(parseFloat(ab.config.get_value("max_value")))){var ad=ae.min,af=ae.max;ad=Math.floor(Math.min(0,Math.max(ad,ae.mean-2*ae.sd)));af=Math.ceil(Math.max(0,Math.min(af,ae.mean+2*ae.sd)));ab.config.set_value("min_value",ad);ab.config.set_value("max_value",af)}})},change_mode:function(ac){var ab=this;ab.mode=ac;ab.config.set_value("mode",ac);if(ac==="Auto"){this.data_manager.clear()}ab.request_draw({clear_tile_cache:true});this.action_icons.mode_icon.attr("title","Set display mode (now: "+ab.mode+")");return ab},update_icons:function(){var ab=this;if(ab.filters_available){ab.action_icons.filters_icon.show()}else{ab.action_icons.filters_icon.hide()}if(ab.tool){ab.action_icons.tools_icon.show();ab.action_icons.param_space_viz_icon.show()}else{ab.action_icons.tools_icon.hide();ab.action_icons.param_space_viz_icon.hide()}},_gen_tile_cache_key:function(ac,ab){return ac+"_"+ab},request_draw:function(ab){if(ab&&ab.clear_tile_cache){this.tile_cache.clear()}this.view.request_redraw(ab,this)},before_draw:function(){this.max_height_px=0},_draw:function(ap){if(!this.can_draw()){return}var am=ap&&ap.clear_after,ak=this.view.low,af=this.view.high,ai=af-ak,ac=this.view.container.width(),ao=this.view.resolution_px_b,ae=1/ao;if(this.is_overview){ak=this.view.max_low;af=this.view.max_high;ao=ac/(view.max_high-view.max_low);ae=1/ao}this.before_draw();this.tiles_div.children().addClass("remove");var ab=Math.floor(ak/(ae*Q)),aj,al,ag,ah=[],an=[];while((ab*Q*ae)<af){aj=Math.floor(ab*Q*ae);al=new w.GenomeRegion({chrom:this.view.chrom,start:aj,end:Math.min(aj+Math.ceil(Q*ae),this.view.max_high)});ag=this.draw_helper(al,ao,ap);ah.push(ag);$.when(ag).then(function(aq){an.push(aq)});ab+=1}if(!am){this.tiles_div.children(".remove").removeClass("remove").remove()}var ad=this;$.when.apply($,ah).then(function(){ad.tiles_div.children(".remove").remove();an=aa.filter(an,function(aq){return aq!==null});if(an.length!==0){ad.postdraw_actions(an,ac,ao,am)}})},_add_yaxis_label:function(ae,ag){var ac=this,af=(ae==="max"?"top":"bottom"),ah=(ae==="max"?"max":"min"),ab=(ae==="max"?"max_value":"min_value"),ad=this.container_div.find(".yaxislabel."+af);ag=ag||function(){ac.request_draw({clear_tile_cache:true})};if(ad.length!==0){ad.text(ac.config.get_value(ab))}else{ad=$("<div/>").text(ac.config.get_value(ab)).make_text_editable({num_cols:12,on_finish:function(ai){$(".tooltip").remove();ac.config.set_value(ab,ai);ag()},help_text:"Set "+ah+" value"}).addClass("yaxislabel "+af).css("color",this.config.get_value("label_color"));this.container_div.prepend(ad)}},postdraw_actions:function(ae,af,ah,ab){if(this.view.reference_track.tiles_div.is(":visible")){this.view.resize_viewport()}var ad=aa.filter(ae,function(ai){return(ai instanceof K)});if(ad.length>0){this.max_height_px=0;var ac=this;aa.each(ae,function(ai){if(!(ai instanceof K)){ai.html_elt.remove();ac.draw_helper(ai.region,ah,{force:true,mode:"Coverage"})}});ac._add_yaxis_label("max")}else{this.container_div.find(".yaxislabel").remove();var ag=aa.find(ae,function(ai){return ai.has_icons});if(ag){aa.each(ae,function(ai){if(!ai.has_icons){ai.html_elt.css("padding-top",D)}})}}},get_mode:function(ab){return this.mode},update_auto_mode:function(ab){},_get_drawables:function(){return[this]},draw_helper:function(ak,am,an){if(!an){an={}}var ac=an.force,ah=an.mode||this.mode,ae=1/am,ad=this,af=this._get_drawables(),al=this._gen_tile_cache_key(am,ak),ag=function(ao){return(ao&&"track" in ao)};var ai=(ac?undefined:ad.tile_cache.get_elt(al));if(ai){if(ag(ai)){ad.show_tile(ai,am)}return ai}if(an.data_fetch===false){return null}var aj=function(){var ao=(aa.find(A,function(aq){return aq===ah})?"Coverage":ah);var ap=aa.map(af,function(aq){return aq.data_manager.get_data(ak,ao,ae,ad.data_url_extra_params)});if(view.reference_track){ap.push(view.reference_track.data_manager.get_data(ak,ah,ae,view.reference_track.data_url_extra_params))}return ap};var ab=$.Deferred();ad.tile_cache.set_elt(al,ab);$.when.apply($,aj()).then(function(){var ao=aj(),au=ao,aA;if(aa.find(ao,function(aC){return j.is_deferred(aC)})){ad.tile_cache.set_elt(al,undefined);$.when(ad.draw_helper(ak,am,an)).then(function(aC){ab.resolve(aC)});return}if(view.reference_track){aA=view.reference_track.data_manager.subset_entry(ao.pop(),ak)}var av=[],ar=[];aa.each(af,function(aF,aC){var aE=aF.mode,aD=au[aC];if(aE==="Auto"){aE=aF.get_mode(aD);aF.update_auto_mode(aE)}av.push(aE);ar.push(aF.get_canvas_height(aD,aE,am,ap))});var at=ad.view.canvas_manager.new_canvas(),aw=ak.get("start"),aB=ak.get("end"),aq=0,ap=Math.ceil((aB-aw)*am)+ad.left_offset,ay=aa.max(ar),ax;at.width=ap;at.height=(an.height||ay);var az=at.getContext("2d");az.translate(ad.left_offset,0);if(af.length>1){az.globalAlpha=0.5;az.globalCompositeOperation="source-over"}aa.each(af,function(aD,aC){ax=aD.draw_tile(au[aC],az,av[aC],ak,am,aA)});if(ax!==undefined){ad.tile_cache.set_elt(al,ax);ad.show_tile(ax,am)}ab.resolve(ax)});return ab},get_canvas_height:function(ab,ad,ae,ac){return this.visible_height_px},_draw_line_track_tile:function(ab,ad,ag,af,ah){var ae=ad.canvas,ac=new J.LinePainter(ab.data,af.get("start"),af.get("end"),this.config.to_key_value_dict(),ag);ac.draw(ad,ae.width,ae.height,ah);return new K(this,af,ah,ae,ab.data)},draw_tile:function(ab,ac,af,ae,ag,ad){},show_tile:function(ad,ag){var ac=this,ab=ad.html_elt;ad.predisplay_actions();var af=(ad.low-(this.is_overview?this.view.max_low:this.view.low))*ag;if(this.left_offset){af-=this.left_offset}ab.css("left",af);if(ab.hasClass("remove")){ab.removeClass("remove")}else{this.tiles_div.append(ab)}ab.css("height","auto");this.max_height_px=Math.max(this.max_height_px,ab.height()-2);ab.parent().children().css("height",this.max_height_px+"px");var ae=this.max_height_px;if(this.visible_height_px!==0){ae=Math.min(this.max_height_px,this.visible_height_px)}this.tiles_div.css("height",ae+"px")},tool_region_and_parameters_str:function(ae){var ab=this,ad=(ae!==undefined?ae.toString():"all"),ac=aa.values(ab.tool.get_inputs_dict()).join(", ");return" - region=["+ad+"], parameters=["+ac+"]"},data_and_mode_compatible:function(ab,ac){if(ac==="Auto"){return true}else{if(ac==="Coverage"){return ab.dataset_type==="bigwig"}else{if(ab.dataset_type==="bigwig"||ab.extra_info==="no_detail"){return false}else{return true}}}},can_subset:function(ab){if(ab.message||ab.extra_info==="no_detail"){return false}else{if(ab.dataset_type==="bigwig"){return(ab.data[1][0]-ab.data[0][0]===1)}}return true},init_for_tool_data:function(){this.data_manager.set("data_type","raw_data");this.data_query_wait=1000;this.dataset_check_type="state"}});var V=function(ac,ab){var ad={resize:false};f.call(this,ac,ab,ad);this.container_div.addClass("label-track")};o(V.prototype,f.prototype,{build_header_div:function(){},init:function(){this.enabled=true},predraw_init:function(){},_draw:function(af){var ad=this.view,ae=ad.high-ad.low,ai=Math.floor(Math.pow(10,Math.floor(Math.log(ae)/Math.log(10)))),ab=Math.floor(ad.low/ai)*ai,ag=this.view.container.width(),ac=$("<div/>").addClass("label-container");while(ab<ad.high){var ah=(ab-ad.low)/ae*ag;ac.append($("<div/>").addClass("label").text(commatize(ab)).css({left:ah}));ab+=ai}this.content_div.children(":first").remove();this.content_div.append(ac)}});var e=function(ac,ab,af){L.call(this,ac,ab,af);this.drawables=[];if("drawables" in af){var ae;for(var ad=0;ad<af.drawables.length;ad++){ae=af.drawables[ad];this.drawables[ad]=n(ae,ac,null);if(ae.left_offset>this.left_offset){this.left_offset=ae.left_offset}}this.enabled=true}aa.each(this.drawables,function(ag){if(ag instanceof c||ag instanceof S){ag.change_mode("Coverage")}});this.update_icons();this.obj_type="CompositeTrack"};o(e.prototype,L.prototype,{display_modes:A,config_params:aa.union(p.prototype.config_params,[{key:"min_value",label:"Min Value",type:"float",default_value:undefined},{key:"max_value",label:"Max Value",type:"float",default_value:undefined},{key:"mode",type:"string",default_value:this.mode,hidden:true},{key:"height",type:"int",default_value:30,hidden:true}]),action_icons_def:[{name:"composite_icon",title:"Show individual tracks",css_class:"layers-stack",on_click_fn:function(ab){$(".tooltip").remove();ab.show_group()}}].concat(L.prototype.action_icons_def),to_dict:y.prototype.to_dict,add_drawable:y.prototype.add_drawable,unpack_drawables:y.prototype.unpack_drawables,config_onchange:function(){this.set_name(this.config.get_value("name"));this.request_draw({clear_tile_cache:true})},on_resize:function(){var ab=this.visible_height_px;aa.each(this.drawables,function(ac){ac.visible_height_px=ab});f.prototype.on_resize.call(this)},change_mode:function(ab){L.prototype.change_mode.call(this,ab);for(var ac=0;ac<this.drawables.length;ac++){this.drawables[ac].change_mode(ab)}},init:function(){var ad=[];for(var ac=0;ac<this.drawables.length;ac++){ad.push(this.drawables[ac].init())}var ab=this;$.when.apply($,ad).then(function(){ab.enabled=true;ab.request_draw()})},update_icons:function(){this.action_icons.filters_icon.hide();this.action_icons.tools_icon.hide();this.action_icons.param_space_viz_icon.hide()},can_draw:p.prototype.can_draw,_get_drawables:function(){return this.drawables},show_group:function(){var ae=new N(this.view,this.container,{name:this.config.get_value("name")}),ab;for(var ad=0;ad<this.drawables.length;ad++){ab=this.drawables[ad];ab.update_icons();ae.add_drawable(ab);ab.container=ae;ae.content_div.append(ab.container_div)}var ac=this.container.replace_drawable(this,ae,true);ae.request_draw({clear_tile_cache:true})},before_draw:function(){var ac=aa.min(aa.map(this.drawables,function(ad){return ad.config.get_value("min_value")})),ab=aa.max(aa.map(this.drawables,function(ad){return ad.config.get_value("max_value")}));this.config.set_value("min_value",ac);this.config.set_value("max_value",ab);aa.each(this.drawables,function(ad){ad.config.set_value("min_value",ac);ad.config.set_value("max_value",ab)})},update_all_min_max:function(){var ac=this,ab=this.config.get_value("min_value"),ad=this.config.get_value("max_value");aa.each(this.drawables,function(ae){ae.config.set_value("min_value",ab);ae.config.set_value("max_value",ad)});this.request_draw({clear_tile_cache:true})},postdraw_actions:function(ah,ab,ak,ag){var af=-1,ad;for(ad=0;ad<ah.length;ad++){var ai=ah[ad].html_elt.find("canvas").height();if(ai>af){af=ai}}for(ad=0;ad<ah.length;ad++){var ae=ah[ad];if(ae.html_elt.find("canvas").height()!==af){this.draw_helper(ae.region,ak,{force:true,height:af});ae.html_elt.remove()}}var ac=this,aj=function(){ac.update_all_min_max()};this._add_yaxis_label("min",aj);this._add_yaxis_label("max",aj)}});var B=function(ab){L.call(this,ab,{content_div:ab.top_labeltrack},{resize:false});this.left_offset=ab.canvas_manager.char_width_px;this.container_div.addClass("reference-track");this.data_url=galaxy_config.root+"api/genomes/"+this.view.dbkey;this.data_url_extra_params={reference:true};this.data_manager=new w.GenomeReferenceDataManager({data_url:this.data_url,can_subset:this.can_subset});this.hide_contents()};o(B.prototype,p.prototype,L.prototype,{config_params:aa.union(p.prototype.config_params,[{key:"height",type:"int",default_value:13,hidden:true}]),build_header_div:function(){},init:function(){this.data_manager.clear();this.enabled=true},predraw_init:function(){},can_draw:p.prototype.can_draw,draw_helper:function(ac,ad,ab){if(ad>this.view.canvas_manager.char_width_px){this.tiles_div.show();return L.prototype.draw_helper.call(this,ac,ad,ab)}else{this.tiles_div.hide();return null}},can_subset:function(ab){return true},draw_tile:function(ad,aj,ae,ag,ak){var ac=this.data_manager.subset_entry(ad,ag),ai=ac.data;var ab=aj.canvas;aj.font=aj.canvas.manager.default_font;aj.textAlign="center";for(var af=0,ah=ai.length;af<ah;af++){aj.fillStyle=this.view.get_base_color(ai[af]);aj.fillText(ai[af],Math.floor(af*ak),10)}return new b(this,ag,ak,ab,ac)}});var g=function(ac,ab,ad){this.mode="Histogram";L.call(this,ac,ab,ad)};o(g.prototype,p.prototype,L.prototype,{display_modes:A,config_params:aa.union(p.prototype.config_params,[{key:"color",label:"Color",type:"color"},{key:"min_value",label:"Min Value",type:"float",default_value:undefined},{key:"max_value",label:"Max Value",type:"float",default_value:undefined},{key:"mode",type:"string",default_value:this.mode,hidden:true},{key:"height",type:"int",default_value:30,hidden:true}]),config_onchange:function(){this.set_name(this.config.get_value("name"));this.request_draw({clear_tile_cache:true})},before_draw:function(){},draw_tile:function(ab,ac,ae,ad,af){return this._draw_line_track_tile(ab,ac,ae,ad,af)},can_subset:function(ab){return(ab.data[1][0]-ab.data[0][0]===1)},postdraw_actions:function(ac,ad,ae,ab){this._add_yaxis_label("max");this._add_yaxis_label("min")}});var r=function(ac,ab,ad){this.mode="Heatmap";L.call(this,ac,ab,ad)};o(r.prototype,p.prototype,L.prototype,{display_modes:["Heatmap"],config_params:aa.union(p.prototype.config_params,[{key:"pos_color",label:"Positive Color",type:"color",default_value:"#FF8C00"},{key:"neg_color",label:"Negative Color",type:"color",default_value:"#4169E1"},{key:"min_value",label:"Min Value",type:"float",default_value:-1},{key:"max_value",label:"Max Value",type:"float",default_value:1},{key:"mode",type:"string",default_value:this.mode,hidden:true},{key:"height",type:"int",default_value:500,hidden:true}]),config_onchange:function(){this.set_name(this.config.get_value("name"));this.request_draw({clear_tile_cache:true})},draw_tile:function(ab,ad,ag,af,ah){var ae=ad.canvas,ac=new J.DiagonalHeatmapPainter(ab.data,af.get("start"),af.get("end"),this.config.to_key_value_dict(),ag);ac.draw(ad,ae.width,ae.height,ah);return new b(this,af,ah,ae,ab.data)}});var c=function(ac,ab,ad){L.call(this,ac,ab,ad);this.container_div.addClass("feature-track");this.summary_draw_height=30;this.slotters={};this.start_end_dct={};this.left_offset=200;this.set_painter_from_config()};o(c.prototype,p.prototype,L.prototype,{display_modes:["Auto","Coverage","Dense","Squish","Pack"],config_params:aa.union(p.prototype.config_params,[{key:"block_color",label:"Block color",type:"color"},{key:"reverse_strand_color",label:"Antisense strand color",type:"color"},{key:"label_color",label:"Label color",type:"color",default_value:"black"},{key:"show_counts",label:"Show summary counts",type:"bool",default_value:true,help:"Show the number of items in each bin when drawing summary histogram"},{key:"min_value",label:"Histogram minimum",type:"float",default_value:null,help:"clear value to set automatically"},{key:"max_value",label:"Histogram maximum",type:"float",default_value:null,help:"clear value to set automatically"},{key:"connector_style",label:"Connector style",type:"select",default_value:"fishbones",options:[{label:"Line with arrows",value:"fishbone"},{label:"Arcs",value:"arcs"}]},{key:"mode",type:"string",default_value:this.mode,hidden:true},{key:"height",type:"int",default_value:0,hidden:true}]),config_onchange:function(){this.set_name(this.config.get_value("name"));this.set_painter_from_config();this.request_draw({clear_tile_cache:true})},set_painter_from_config:function(){if(this.config.get_value("connector_style")==="arcs"){this.painter=J.ArcLinkedFeaturePainter}else{this.painter=J.LinkedFeaturePainter}},postdraw_actions:function(an,ae,ap,am){L.prototype.postdraw_actions.call(this,an,ae,ap,am);var ag=this,ah,al=aa.filter(an,function(aq){return(aq instanceof K)});if(al.length===0){var ab={};aa.each(aa.pluck(an,"incomplete_features"),function(aq){aa.each(aq,function(ar){ab[ar[0]]=ar})});var ao=this;aa.each(an,function(aq){ao.draw_tile({data:aa.values(ab)},aq.canvas.getContext("2d"),aq.mode,aq.region,ap,aq.seq_data,true)})}if(ag.filters_manager){var af=ag.filters_manager.filters,aj;for(aj=0;aj<af.length;aj++){af[aj].update_ui_elt()}var ai=false,ak,ad;for(ah=0;ah<an.length;ah++){if(an[ah].data.length){ak=an[ah].data[0];for(aj=0;aj<af.length;aj++){ad=af[aj];if(ad.applies_to(ak)&&ad.min!==ad.max){ai=true;break}}}}if(ag.filters_available!==ai){ag.filters_available=ai;if(!ag.filters_available){ag.filters_manager.hide()}ag.update_icons()}}if(an[0] instanceof M){var ac=true;for(ah=0;ah<an.length;ah++){if(!an[ah].all_slotted){ac=false;break}}if(!ac){this.action_icons.show_more_rows_icon.show()}else{this.action_icons.show_more_rows_icon.hide()}}else{this.action_icons.show_more_rows_icon.hide()}},update_auto_mode:function(ab){if(this.mode==="Auto"){if(ab==="no_detail"){ab="feature spans"}this.action_icons.mode_icon.attr("title","Set display mode (now: Auto/"+ab+")")}},incremental_slots:function(af,ab,ae){var ac=this.view.canvas_manager.dummy_context,ad=this.slotters[af];if(!ad||(ad.mode!==ae)){ad=new (s.FeatureSlotter)(af,ae,z,function(ag){return ac.measureText(ag)});this.slotters[af]=ad}return ad.slot_features(ab)},get_mode:function(ab){if(ab.extra_info==="no_detail"||this.is_overview){mode="no_detail"}else{if(this.view.high-this.view.low>G){mode="Squish"}else{mode="Pack"}}return mode},get_canvas_height:function(ab,af,ag,ac){if(af==="Coverage"||ab.dataset_type==="bigwig"){return this.summary_draw_height}else{var ae=this.incremental_slots(ag,ab.data,af);var ad=new (this.painter)(null,null,null,this.config.to_key_value_dict(),af);return Math.max(this.min_height_px,ad.get_required_height(ae,ac))}},draw_tile:function(am,ar,ap,af,aj,ae,an){var aq=this,ad=ar.canvas,ay=af.get("start"),ac=af.get("end"),ag=this.left_offset;if(am.dataset_type==="bigwig"){return this._draw_line_track_tile(am,ar,ap,af,aj)}var ai=[],ao=this.slotters[aj].slots;all_slotted=true;if(am.data){var ak=this.filters_manager.filters;for(var at=0,av=am.data.length;at<av;at++){var ah=am.data[at];var au=false;var al;for(var ax=0,aC=ak.length;ax<aC;ax++){al=ak[ax];al.update_attrs(ah);if(!al.keep(ah)){au=true;break}}if(!au){ai.push(ah);if(!(ah[0] in ao)){all_slotted=false}}}}var aB=(this.filters_manager.alpha_filter?new C(this.filters_manager.alpha_filter):null),az=(this.filters_manager.height_filter?new C(this.filters_manager.height_filter):null),aA=new (this.painter)(ai,ay,ac,this.config.to_key_value_dict(),ap,aB,az,ae,function(aD){return aq.view.get_base_color(aD)});var aw=null;ar.fillStyle=this.config.get_value("block_color");ar.font=ar.canvas.manager.default_font;ar.textAlign="right";if(am.data){var ab=aA.draw(ar,ad.width,ad.height,aj,ao);aw=ab.feature_mapper;incomplete_features=ab.incomplete_features;aw.translation=-ag}if(!an){return new M(aq,af,aj,ad,am.data,ap,am.message,all_slotted,aw,incomplete_features,ae)}}});var Y=function(ac,ab,ad){L.call(this,ac,ab,ad);this.painter=J.VariantPainter;this.summary_draw_height=30;this.left_offset=30};o(Y.prototype,p.prototype,L.prototype,{display_modes:["Auto","Coverage","Dense","Squish","Pack"],config_params:aa.union(p.prototype.config_params,[{key:"color",label:"Histogram color",type:"color"},{key:"show_sample_data",label:"Show sample data",type:"bool",default_value:true},{key:"show_labels",label:"Show summary and sample labels",type:"bool",default_value:true},{key:"summary_height",label:"Locus summary height",type:"float",default_value:20},{key:"mode",type:"string",default_value:this.mode,hidden:true},{key:"height",type:"int",default_value:0,hidden:true}]),config_onchange:function(){this.set_name(this.config.get_value("name"));this.request_draw({clear_tile_cache:true})},draw_tile:function(ab,ae,ag,af,ah){if(ab.dataset_type==="bigwig"){return this._draw_line_track_tile(ab,ae,"Histogram",af,ah)}else{var ad=this.view,ac=new (this.painter)(ab.data,af.get("start"),af.get("end"),this.config.to_key_value_dict(),ag,function(ai){return ad.get_base_color(ai)});ac.draw(ae,ae.canvas.width,ae.canvas.height,ah);return new b(this,af,ah,ae.canvas,ab.data)}},get_canvas_height:function(ab,af,ag,ad){if(ab.dataset_type==="bigwig"){return this.summary_draw_height}else{var ac=(this.dataset.get_metadata("sample_names")?this.dataset.get_metadata("sample_names").length:0);if(ac===0&&ab.data.length!==0){ac=ab.data[0][7].match(/,/g);if(ac===null){ac=1}else{ac=ac.length+1}}var ae=new (this.painter)(null,null,null,this.config.to_key_value_dict(),af);return ae.get_required_height(ac)}},predraw_init:function(){var ab=[f.prototype.predraw_init.call(this)];if(!this.dataset.get_metadata("sample_names")){ab.push(this.dataset.fetch())}return ab},postdraw_actions:function(af,ag,ai,ac){L.prototype.postdraw_actions.call(this,af,ag,ai,ac);var ae=aa.filter(af,function(aj){return(aj instanceof K)});var ad=this.dataset.get_metadata("sample_names");if(ae.length===0&&this.config.get_value("show_labels")&&ad&&ad.length>1){var ab;if(this.container_div.find(".yaxislabel.variant").length===0){ab=this.config.get_value("summary_height")/2;this.tiles_div.prepend($("<div/>").text("Summary").addClass("yaxislabel variant top").css({"font-size":ab+"px",top:(this.config.get_value("summary_height")-ab)/2+"px"}));if(this.config.get_value("show_sample_data")){var ah=ad.join("<br/>");this.tiles_div.prepend($("<div/>").html(ah).addClass("yaxislabel variant top sample").css({top:this.config.get_value("summary_height")}))}}ab=(this.mode==="Squish"?5:10)+"px";$(this.tiles_div).find(".sample").css({"font-size":ab,"line-height":ab});$(this.tiles_div).find(".yaxislabel").css("color",this.config.get_value("label_color"))}else{this.container_div.find(".yaxislabel.variant").remove()}}});var S=function(ac,ab,ad){c.call(this,ac,ab,ad);this.painter=J.ReadPainter;this.update_icons()};o(S.prototype,p.prototype,L.prototype,c.prototype,{config_params:aa.union(p.prototype.config_params,[{key:"block_color",label:"Histogram color",type:"color"},{key:"detail_block_color",label:"Sense strand block color",type:"color",default_value:"#AAAAAA"},{key:"reverse_strand_color",label:"Antisense strand block color",type:"color",default_value:"#DDDDDD"},{key:"label_color",label:"Label color",type:"color",default_value:"black"},{key:"show_insertions",label:"Show insertions",type:"bool",default_value:false},{key:"show_differences",label:"Show differences only",type:"bool",default_value:true},{key:"show_counts",label:"Show summary counts",type:"bool",default_value:true},{key:"mode",type:"string",default_value:this.mode,hidden:true},{key:"min_value",label:"Histogram minimum",type:"float",default_value:null,help:"clear value to set automatically"},{key:"max_value",label:"Histogram maximum",type:"float",default_value:null,help:"clear value to set automatically"},{key:"height",type:"int",default_value:0,hidden:true}]),config_onchange:function(){this.set_name(this.config.get_value("name"));this.request_draw({clear_tile_cache:true})}});var d={CompositeTrack:e,DrawableGroup:N,DiagonalHeatmapTrack:r,FeatureTrack:c,LineTrack:g,ReadTrack:S,VariantTrack:Y,VcfTrack:Y};var n=function(ad,ac,ab){if("copy" in ad){return ad.copy(ab)}else{var ae=ad.obj_type;if(!ae){ae=ad.track_type}return new d[ae](ac,ab,ad)}};return{TracksterView:X,DrawableGroup:N,LineTrack:g,FeatureTrack:c,DiagonalHeatmapTrack:r,ReadTrack:S,VariantTrack:Y,CompositeTrack:e,object_from_template:n}}); \ No newline at end of file +define(["libs/underscore","viz/visualization","viz/viz_views","viz/trackster/util","viz/trackster/slotting","viz/trackster/painters","viz/trackster/filters","mvc/data","mvc/tools","utils/config"],function(ab,w,V,j,s,J,h,X,P,R){var o=ab.extend;var l={};var i=function(ac,ad){l[ac.attr("id")]=ad};var k=function(ac,ad,af,ae){af=".group";l[ac.attr("id")]=ae;ac.bind("drag",{handle:"."+ad,relative:true},function(an,ao){var am=$(this),ar=$(this).parent(),aj=ar.children(".track,.group"),al=l[$(this).attr("id")],ai,ah,ap,ag,ak;ah=$(this).parents(af);if(ah.length!==0){ap=ah.position().top;ag=ap+ah.outerHeight();var aq=l[ah.attr("id")];if(ao.offsetY<ap){$(this).insertBefore(ah);aq.remove_drawable(al);aq.container.add_drawable_before(al,aq);return}else{if(ao.offsetY>ag){$(this).insertAfter(ah);aq.remove_drawable(al);aq.container.add_drawable(al);return}}}ah=null;for(ak=0;ak<aj.length;ak++){ai=$(aj.get(ak));ap=ai.position().top;ag=ap+ai.outerHeight();if(ai.is(af)&&this!==ai.get(0)&&ao.offsetY>=ap&&ao.offsetY<=ag){if(ao.offsetY-ap<ag-ao.offsetY){ai.find(".content-div").prepend(this)}else{ai.find(".content-div").append(this)}if(al.container){al.container.remove_drawable(al)}l[ai.attr("id")].add_drawable(al);return}}for(ak=0;ak<aj.length;ak++){ai=$(aj.get(ak));if(ao.offsetY<ai.position().top&&!(ai.hasClass("reference-track")||ai.hasClass("intro"))){break}}if(ak===aj.length){if(this!==aj.get(ak-1)){ar.append(this);l[ar.attr("id")].move_drawable(al,ak)}}else{if(this!==aj.get(ak)){$(this).insertBefore(aj.get(ak));l[ar.attr("id")].move_drawable(al,(ao.deltaY>0?ak-1:ak))}}}).bind("dragstart",function(){$(this).addClass("dragging")}).bind("dragend",function(){$(this).removeClass("dragging")})};var D=20,z=100,G=12000,Q=400,I=5000,v=100,m="Cannot display dataset due to an error. ",H="A converter for this dataset is not installed. Please check your datatypes_conf.xml file.",E="No data for this chrom/contig.",u="Preparing data. This can take a while for a large dataset. If the visualization is saved and closed, preparation will continue in the background.",x="Tool cannot be rerun: ",a="Loading data...",T="Ready for display",O=10,F=20,A=["Histogram","Line","Filled","Intensity"];function U(ad,ac){if(!ac){ac=0}var ae=Math.pow(10,ac);return Math.round(ad*ae)/ae}var p=function(ad,ac,ag){if(!p.id_counter){p.id_counter=0}this.id=p.id_counter++;this.view=ad;this.container=ac;this.drag_handle_class=ag.drag_handle_class;this.is_overview=false;this.action_icons={};this.config=R.ConfigSettingCollection.from_models_and_saved_values(this.config_params,ag.prefs);if(!this.config.get_value("name")){this.config.set_value("name",ag.name)}if(this.config_onchange){this.config.on("change",this.config_onchange,this)}this.container_div=this.build_container_div();this.header_div=null;if(ag.header!==false){var ae=new V.TrackHeaderView({model:this,id:this.id});this.header_div=ae.$el;this.container_div.append(this.header_div);var af=ae.icons_div;this.action_icons=ae.action_icons;this.container_div.hover(function(){af.show()},function(){af.hide()})}};p.prototype.action_icons_def=[{name:"toggle_icon",title:"Hide/show content",css_class:"toggle",on_click_fn:function(ac){if(ac.config.get_value("content_visible")){ac.action_icons.toggle_icon.addClass("toggle-expand").removeClass("toggle");ac.hide_contents();ac.config.set_value("content_visible",false)}else{ac.action_icons.toggle_icon.addClass("toggle").removeClass("toggle-expand");ac.config.set_value("content_visible",true);ac.show_contents()}}},{name:"settings_icon",title:"Edit settings",css_class:"gear",on_click_fn:function(ad){var ac=new R.ConfigSettingCollectionView({collection:ad.config});ac.render_in_modal("Configure Track")}},{name:"remove_icon",title:"Remove",css_class:"remove-icon",on_click_fn:function(ac){$(".tooltip").remove();ac.remove()}}];o(p.prototype,{config_params:[{key:"name",label:"Name",type:"text",default_value:""},{key:"content_visible",type:"bool",default_value:true,hidden:true}],config_onchange:function(){},init:function(){},changed:function(){this.view.changed()},can_draw:function(){if(this.enabled&&this.config.get_value("content_visible")){return true}return false},request_draw:function(){},_draw:function(ac){},to_dict:function(){},set_name:function(ac){this.old_name=this.config.get_value("name");this.config.set_value("name",ac)},revert_name:function(){if(this.old_name){this.config.set_value("name",this.old_name)}},remove:function(){this.changed();this.container.remove_drawable(this);var ac=this.view;this.container_div.hide(0,function(){$(this).remove();ac.update_intro_div()})},build_container_div:function(){},update_icons:function(){},hide_contents:function(){},show_contents:function(){},get_drawables:function(){}});var y=function(ad,ac,ae){p.call(this,ad,ac,ae);this.obj_type=ae.obj_type;this.drawables=[]};o(y.prototype,p.prototype,{unpack_drawables:function(ae){this.drawables=[];var ad;for(var ac=0;ac<ae.length;ac++){ad=n(ae[ac],this.view,this);this.add_drawable(ad)}},init:function(){for(var ac=0;ac<this.drawables.length;ac++){this.drawables[ac].init()}},_draw:function(ac){for(var ad=0;ad<this.drawables.length;ad++){this.drawables[ad]._draw(ac)}},to_dict:function(){var ad=[];for(var ac=0;ac<this.drawables.length;ac++){ad.push(this.drawables[ac].to_dict())}return{prefs:this.config.to_key_value_dict(),obj_type:this.obj_type,drawables:ad}},add_drawable:function(ac){this.drawables.push(ac);ac.container=this;this.changed()},add_drawable_before:function(ae,ac){this.changed();var ad=this.drawables.indexOf(ac);if(ad!==-1){this.drawables.splice(ad,0,ae);return true}return false},replace_drawable:function(ae,ac,ad){var af=this.drawables.indexOf(ae);if(af!==-1){this.drawables[af]=ac;if(ad){ae.container_div.replaceWith(ac.container_div)}this.changed()}return af},remove_drawable:function(ad){var ac=this.drawables.indexOf(ad);if(ac!==-1){this.drawables.splice(ac,1);ad.container=null;this.changed();return true}return false},move_drawable:function(ad,ae){var ac=this.drawables.indexOf(ad);if(ac!==-1){this.drawables.splice(ac,1);this.drawables.splice(ae,0,ad);this.changed();return true}return false},get_drawables:function(){return this.drawables},get_tracks:function(af){var ac=this.drawables.slice(0),ad=[],ae;while(ac.length!==0){ae=ac.shift();if(ae instanceof af){ad.push(ae)}else{if(ae.drawables){ac=ac.concat(ae.drawables)}}}return ad}});var N=function(ad,ac,af){o(af,{obj_type:"DrawableGroup",drag_handle_class:"group-handle"});y.call(this,ad,ac,af);this.content_div=$("<div/>").addClass("content-div").attr("id","group_"+this.id+"_content_div").appendTo(this.container_div);i(this.container_div,this);i(this.content_div,this);k(this.container_div,this.drag_handle_class,".group",this);this.filters_manager=new h.FiltersManager(this);this.header_div.after(this.filters_manager.parent_div);this.filters_manager.parent_div.after($("<div style='clear: both'/>"));this.saved_filters_managers=[];if("drawables" in af){this.unpack_drawables(af.drawables)}if("filters" in af){var ae=this.filters_manager;this.filters_manager=new h.FiltersManager(this,af.filters);ae.parent_div.replaceWith(this.filters_manager.parent_div);if(af.filters.visible){this.setup_multitrack_filtering()}}};o(N.prototype,p.prototype,y.prototype,{action_icons_def:[p.prototype.action_icons_def[0],p.prototype.action_icons_def[1],{name:"composite_icon",title:"Show composite track",css_class:"layers-stack",on_click_fn:function(ac){$(".tooltip").remove();ac.show_composite_track()}},{name:"filters_icon",title:"Filters",css_class:"ui-slider-050",on_click_fn:function(ac){if(ac.filters_manager.visible()){ac.filters_manager.clear_filters();ac._restore_filter_managers()}else{ac.setup_multitrack_filtering();ac.request_draw({clear_tile_cache:true})}ac.filters_manager.toggle()}},p.prototype.action_icons_def[2]],build_container_div:function(){var ac=$("<div/>").addClass("group").attr("id","group_"+this.id);if(this.container){this.container.content_div.append(ac)}return ac},hide_contents:function(){this.tiles_div.hide()},show_contents:function(){this.tiles_div.show();this.request_draw()},update_icons:function(){var ae=this.drawables.length;if(ae===0){this.action_icons.composite_icon.hide();this.action_icons.filters_icon.hide()}else{if(ae===1){this.action_icons.composite_icon.toggle(this.drawables[0] instanceof e);this.action_icons.filters_icon.hide()}else{var al,ak,ai,ao=true,ag=this.drawables[0].get_type(),ac=0;for(al=0;al<ae;al++){ai=this.drawables[al];if(ai.get_type()!==ag){can_composite=false;break}if(ai instanceof c){ac++}}if(ao&&this.drawables[0] instanceof g){this.action_icons.composite_icon.show()}else{this.action_icons.composite_icon.hide();$(".tooltip").remove()}if(ac>1&&ac===this.drawables.length){var ap={},ad;ai=this.drawables[0];for(ak=0;ak<ai.filters_manager.filters.length;ak++){ad=ai.filters_manager.filters[ak];ap[ad.name]=[ad]}for(al=1;al<this.drawables.length;al++){ai=this.drawables[al];for(ak=0;ak<ai.filters_manager.filters.length;ak++){ad=ai.filters_manager.filters[ak];if(ad.name in ap){ap[ad.name].push(ad)}}}this.filters_manager.remove_all();var af,ah,aj,am;for(var an in ap){af=ap[an];if(af.length===ac){ah=new h.NumberFilter({name:af[0].name,index:af[0].index});this.filters_manager.add_filter(ah)}}this.action_icons.filters_icon.toggle(this.filters_manager.filters.length>0)}else{this.action_icons.filters_icon.hide()}}}},_restore_filter_managers:function(){for(var ac=0;ac<this.drawables.length;ac++){this.drawables[ac].filters_manager=this.saved_filters_managers[ac]}this.saved_filters_managers=[]},setup_multitrack_filtering:function(){if(this.filters_manager.filters.length>0){this.saved_filters_managers=[];for(var ac=0;ac<this.drawables.length;ac++){drawable=this.drawables[ac];this.saved_filters_managers.push(drawable.filters_manager);drawable.filters_manager=this.filters_manager}}this.filters_manager.init_filters()},show_composite_track:function(){var ad=new e(this.view,this.view,{name:this.config.get_value("name"),drawables:this.drawables});var ac=this.container.replace_drawable(this,ad,true);ad.request_draw()},add_drawable:function(ac){y.prototype.add_drawable.call(this,ac);this.update_icons()},remove_drawable:function(ac){y.prototype.remove_drawable.call(this,ac);this.update_icons()},to_dict:function(){if(this.filters_manager.visible()){this._restore_filter_managers()}var ac=o(y.prototype.to_dict.call(this),{filters:this.filters_manager.to_dict()});if(this.filters_manager.visible()){this.setup_multitrack_filtering()}return ac},request_draw:function(ac){ab.each(this.drawables,function(ad){ad.request_draw(ac)})}});var Y=Backbone.View.extend({initialize:function(ac){o(ac,{obj_type:"View"});y.call(this,"View",ac.container,ac);this.chrom=null;this.vis_id=ac.vis_id;this.dbkey=ac.dbkey;this.label_tracks=[];this.tracks_to_be_redrawn=[];this.max_low=0;this.max_high=0;this.zoom_factor=3;this.min_separation=30;this.has_changes=false;this.load_chroms_deferred=null;this.render();this.canvas_manager=new w.CanvasManager(this.container.get(0).ownerDocument);this.reset();this.config=R.ConfigSettingCollection.from_models_and_saved_values([{key:"name",label:"Name",type:"text",default_value:""},{key:"a_color",label:"A Color",type:"color",default_value:"#FF0000"},{key:"c_color",label:"C Color",type:"color",default_value:"#00FF00"},{key:"g_color",label:"G Color",type:"color",default_value:"#0000FF"},{key:"t_color",label:"T Color",type:"color",default_value:"#FF00FF"},{key:"n_color",label:"N Color",type:"color",default_value:"#AAAAAA"}],{name:ac.name})},render:function(){this.requested_redraw=false;var ae=this.container,ac=this;this.top_container=$("<div/>").addClass("top-container").appendTo(ae);this.browser_content_div=$("<div/>").addClass("content").appendTo(ae);this.bottom_container=$("<div/>").addClass("bottom-container").appendTo(ae);this.top_labeltrack=$("<div/>").addClass("top-labeltrack").appendTo(this.top_container);this.viewport_container=$("<div/>").addClass("viewport-container").attr("id","viewport-container").appendTo(this.browser_content_div);this.content_div=this.viewport_container;i(this.viewport_container,ac);this.intro_div=$("<div/>").addClass("intro").appendTo(this.viewport_container).hide();var af=$("<div/>").text("Add Datasets to Visualization").addClass("action-button").appendTo(this.intro_div).click(function(){w.select_datasets(galaxy_config.root+"visualization/list_current_history_datasets",galaxy_config.root+"api/datasets",{"f-dbkey":ac.dbkey},function(ag){ab.each(ag,function(ah){ac.add_drawable(n(ah,ac,ac))})})});this.nav_labeltrack=$("<div/>").addClass("nav-labeltrack").appendTo(this.bottom_container);this.nav_container=$("<div/>").addClass("trackster-nav-container").prependTo(this.top_container);this.nav=$("<div/>").addClass("trackster-nav").appendTo(this.nav_container);this.overview=$("<div/>").addClass("overview").appendTo(this.bottom_container);this.overview_viewport=$("<div/>").addClass("overview-viewport").appendTo(this.overview);this.overview_close=$("<a/>").attr("title","Close overview").addClass("icon-button overview-close tooltip").hide().appendTo(this.overview_viewport);this.overview_highlight=$("<div/>").addClass("overview-highlight").hide().appendTo(this.overview_viewport);this.overview_box_background=$("<div/>").addClass("overview-boxback").appendTo(this.overview_viewport);this.overview_box=$("<div/>").addClass("overview-box").appendTo(this.overview_viewport);this.default_overview_height=this.overview_box.height();this.nav_controls=$("<div/>").addClass("nav-controls").appendTo(this.nav);this.chrom_select=$("<select/>").attr({name:"chrom"}).addClass("chrom-nav").append("<option value=''>Loading</option>").appendTo(this.nav_controls);var ad=function(ag){if(ag.type==="focusout"||(ag.keyCode||ag.which)===13||(ag.keyCode||ag.which)===27){if((ag.keyCode||ag.which)!==27){ac.go_to($(this).val())}$(this).hide();$(this).val("");ac.location_span.show();ac.chrom_select.show()}ag.stopPropagation()};this.nav_input=$("<input/>").addClass("nav-input").hide().bind("keyup focusout",ad).appendTo(this.nav_controls);this.location_span=$("<span/>").addClass("location").attr("title","Click to change location").tooltip({placement:"bottom"}).appendTo(this.nav_controls);this.location_span.click(function(){ac.location_span.hide();ac.chrom_select.hide();ac.nav_input.val(ac.chrom+":"+ac.low+"-"+ac.high);ac.nav_input.css("display","inline-block");ac.nav_input.select();ac.nav_input.focus();ac.nav_input.autocomplete({source:function(ai,ag){var aj=[],ah=$.map(ac.get_tracks(c),function(ak){return ak.data_manager.search_features(ai.term).success(function(al){aj=aj.concat(al)})});$.when.apply($,ah).done(function(){ag($.map(aj,function(ak){return{label:ak[0],value:ak[1]}}))})},minLength:2})});if(this.vis_id!==undefined){this.hidden_input=$("<input/>").attr("type","hidden").val(this.vis_id).appendTo(this.nav_controls)}this.zo_link=$("<a/>").attr("id","zoom-out").attr("title","Zoom out").tooltip({placement:"bottom"}).click(function(){ac.zoom_out()}).appendTo(this.nav_controls);this.zi_link=$("<a/>").attr("id","zoom-in").attr("title","Zoom in").tooltip({placement:"bottom"}).click(function(){ac.zoom_in()}).appendTo(this.nav_controls);this.load_chroms_deferred=this.load_chroms({low:0});this.chrom_select.bind("change",function(){ac.change_chrom(ac.chrom_select.val())});this.browser_content_div.click(function(ag){$(this).find("input").trigger("blur")});this.browser_content_div.bind("dblclick",function(ag){ac.zoom_in(ag.pageX,this.viewport_container)});this.overview_box.bind("dragstart",function(ag,ah){this.current_x=ah.offsetX}).bind("drag",function(ag,ai){var aj=ai.offsetX-this.current_x;this.current_x=ai.offsetX;var ah=Math.round(aj/ac.viewport_container.width()*(ac.max_high-ac.max_low));ac.move_delta(-ah)});this.overview_close.click(function(){ac.reset_overview()});this.viewport_container.bind("draginit",function(ag,ah){if(ag.clientX>ac.viewport_container.width()-16){return false}}).bind("dragstart",function(ag,ah){ah.original_low=ac.low;ah.current_height=ag.clientY;ah.current_x=ah.offsetX}).bind("drag",function(ai,ak){var ag=$(this);var al=ak.offsetX-ak.current_x;var ah=ag.scrollTop()-(ai.clientY-ak.current_height);ag.scrollTop(ah);ak.current_height=ai.clientY;ak.current_x=ak.offsetX;var aj=Math.round(al/ac.viewport_container.width()*(ac.high-ac.low));ac.move_delta(aj)});this.top_labeltrack.bind("dragstart",function(ag,ah){return $("<div/>").addClass("zoom-area").css("height",ac.browser_content_div.height()+ac.top_labeltrack.height()+ac.nav_labeltrack.height()+1).appendTo($(this))}).bind("drag",function(ak,al){$(al.proxy).css({left:Math.min(ak.pageX,al.startX)-ac.container.offset().left,width:Math.abs(ak.pageX-al.startX)});var ah=Math.min(ak.pageX,al.startX)-ac.container.offset().left,ag=Math.max(ak.pageX,al.startX)-ac.container.offset().left,aj=(ac.high-ac.low),ai=ac.viewport_container.width();ac.update_location(Math.round(ah/ai*aj)+ac.low,Math.round(ag/ai*aj)+ac.low)}).bind("dragend",function(al,am){var ah=Math.min(al.pageX,am.startX),ag=Math.max(al.pageX,am.startX),aj=(ac.high-ac.low),ai=ac.viewport_container.width(),ak=ac.low;ac.low=Math.round(ah/ai*aj)+ak;ac.high=Math.round(ag/ai*aj)+ak;$(am.proxy).remove();ac.request_redraw()});this.add_label_track(new W(this,{content_div:this.top_labeltrack}));this.add_label_track(new W(this,{content_div:this.nav_labeltrack}));$(window).bind("resize",function(){if(this.resize_timer){clearTimeout(this.resize_timer)}this.resize_timer=setTimeout(function(){ac.resize_window()},500)});$(document).bind("redraw",function(){ac.redraw()});this.reset();$(window).trigger("resize")},get_base_color:function(ac){return this.config.get_value(ac.toLowerCase()+"_color")||this.config.get_value("n_color")}});o(Y.prototype,y.prototype,{changed:function(){this.has_changes=true},update_intro_div:function(){this.intro_div.toggle(this.drawables.length===0)},trigger_navigate:function(ad,af,ac,ag){if(this.timer){clearTimeout(this.timer)}if(ag){var ae=this;this.timer=setTimeout(function(){ae.trigger("navigate",ad+":"+af+"-"+ac)},500)}else{view.trigger("navigate",ad+":"+af+"-"+ac)}},update_location:function(ac,ae){this.location_span.text(commatize(ac)+" - "+commatize(ae));this.nav_input.val(this.chrom+":"+commatize(ac)+"-"+commatize(ae));var ad=view.chrom_select.val();if(ad!==""){this.trigger_navigate(ad,view.low,view.high,true)}},load_chroms:function(ae){ae.num=v;var ac=this,ad=$.Deferred();$.ajax({url:galaxy_config.root+"api/genomes/"+this.dbkey,data:ae,dataType:"json",success:function(ag){if(ag.chrom_info.length===0){return}if(ag.reference){var ah=new B(ac);ac.add_label_track(ah);ac.reference_track=ah}ac.chrom_data=ag.chrom_info;var ak='<option value="">Select Chrom/Contig</option>';for(var aj=0,af=ac.chrom_data.length;aj<af;aj++){var ai=ac.chrom_data[aj].chrom;ak+='<option value="'+ai+'">'+ai+"</option>"}if(ag.prev_chroms){ak+='<option value="previous">Previous '+v+"</option>"}if(ag.next_chroms){ak+='<option value="next">Next '+v+"</option>"}ac.chrom_select.html(ak);ac.chrom_start_index=ag.start_index;ad.resolve(ag.chrom_info)},error:function(){alert("Could not load chroms for this dbkey: "+ac.dbkey)}});return ad},change_chrom:function(ah,ad,aj){var ae=this;if(!ae.chrom_data){ae.load_chroms_deferred.then(function(){ae.change_chrom(ah,ad,aj)});return}if(!ah||ah==="None"){return}if(ah==="previous"){ae.load_chroms({low:this.chrom_start_index-v});return}if(ah==="next"){ae.load_chroms({low:this.chrom_start_index+v});return}var ai=$.grep(ae.chrom_data,function(ak,al){return ak.chrom===ah})[0];if(ai===undefined){ae.load_chroms({chrom:ah},function(){ae.change_chrom(ah,ad,aj)});return}else{if(ah!==ae.chrom){ae.chrom=ah;ae.chrom_select.val(ae.chrom);ae.max_high=ai.len-1;ae.reset();for(var ag=0,ac=ae.drawables.length;ag<ac;ag++){var af=ae.drawables[ag];if(af.init){af.init()}}if(ae.reference_track){ae.reference_track.init()}}if(ad===undefined&&aj===undefined){ae.low=0;ae.high=ae.max_high}else{ae.low=(ad!==undefined?Math.max(ad,0):0);if(aj===undefined){ae.low=Math.max(ae.low-15,0);ae.high=ae.low+30}else{ae.high=Math.min(aj,ae.max_high)}}ae.reset_overview();ae.request_redraw()}},go_to:function(ag){ag=ag.replace(/,/g,"");ag=ag.replace(/:|\-/g," ");var ad=ag.split(/\s+/),af=ad[0],ae=(ad[1]?parseInt(ad[1],10):undefined),ac=(ad[2]?parseInt(ad[2],10):undefined);this.change_chrom(af,ae,ac)},move_fraction:function(ae){var ac=this;var ad=ac.high-ac.low;this.move_delta(ae*ad)},move_delta:function(af){var ac=this;var ae=ac.high-ac.low;if(ac.low-af<ac.max_low){ac.low=ac.max_low;ac.high=ac.max_low+ae}else{if(ac.high-af>ac.max_high){ac.high=ac.max_high;ac.low=ac.max_high-ae}else{ac.high-=af;ac.low-=af}}ac.request_redraw({data_fetch:false});if(this.redraw_on_move_fn){clearTimeout(this.redraw_on_move_fn)}this.redraw_on_move_fn=setTimeout(function(){ac.request_redraw()},200);var ad=ac.chrom_select.val();this.trigger_navigate(ad,ac.low,ac.high,true)},add_drawable:function(ac){y.prototype.add_drawable.call(this,ac);ac.init();this.changed();this.update_intro_div()},add_label_track:function(ac){ac.view=this;ac.init();this.label_tracks.push(ac)},remove_drawable:function(ae,ad){y.prototype.remove_drawable.call(this,ae);if(ad){var ac=this;ae.container_div.hide(0,function(){$(this).remove();ac.update_intro_div()})}},reset:function(){this.low=this.max_low;this.high=this.max_high;this.viewport_container.find(".yaxislabel").remove()},request_redraw:function(ad,ae){var ac=this,af=(ae?[ae]:ac.drawables);ab.each(af,function(ag){var ah=ab.find(ac.tracks_to_be_redrawn,function(ai){return ai[0]===ag});if(ah){ah[1]=ad}else{ac.tracks_to_be_redrawn.push([ag,ad])}});if(!this.requested_redraw){requestAnimationFrame(function(){ac._redraw()});this.requested_redraw=true}},_redraw:function(){this.requested_redraw=false;var ac=this.low,ag=this.high;if(ac<this.max_low){ac=this.max_low}if(ag>this.max_high){ag=this.max_high}var ad=this.high-this.low;if(this.high!==0&&ad<this.min_separation){ag=ac+this.min_separation}this.low=Math.floor(ac);this.high=Math.ceil(ag);this.update_location(this.low,this.high);this.resolution_px_b=this.viewport_container.width()/(this.high-this.low);var af=(this.low/(this.max_high-this.max_low)*this.overview_viewport.width())||0;var ah=((this.high-this.low)/(this.max_high-this.max_low)*this.overview_viewport.width())||0;var ae=13;this.overview_box.css({left:af,width:Math.max(ae,ah)}).show();if(ah<ae){this.overview_box.css("left",af-(ae-ah)/2)}if(this.overview_highlight){this.overview_highlight.css({left:af,width:ah})}ab.each(this.tracks_to_be_redrawn,function(ak){var ai=ak[0],aj=ak[1];if(ai){ai._draw(aj)}});this.tracks_to_be_redrawn=[];ab.each(this.label_tracks,function(ai){ai._draw()})},zoom_in:function(ad,ae){if(this.max_high===0||this.high-this.low<=this.min_separation){return}var af=this.high-this.low,ag=af/2+this.low,ac=(af/this.zoom_factor)/2;if(ad){ag=ad/this.viewport_container.width()*(this.high-this.low)+this.low}this.low=Math.round(ag-ac);this.high=Math.round(ag+ac);this.changed();this.request_redraw()},zoom_out:function(){if(this.max_high===0){return}var ad=this.high-this.low,ae=ad/2+this.low,ac=(ad*this.zoom_factor)/2;this.low=Math.round(ae-ac);this.high=Math.round(ae+ac);this.changed();this.request_redraw()},resize_viewport:function(){this.viewport_container.height(this.container.height()-this.top_container.height()-this.bottom_container.height())},resize_window:function(){this.resize_viewport();this.request_redraw()},set_overview:function(ae){if(this.overview_drawable){if(this.overview_drawable.dataset.id===ae.dataset.id){return}this.overview_viewport.find(".track").remove()}var ad=ae.copy({content_div:this.overview_viewport}),ac=this;ad.header_div.hide();ad.is_overview=true;ac.overview_drawable=ad;this.overview_drawable.postdraw_actions=function(){ac.overview_highlight.show().height(ac.overview_drawable.content_div.height());ac.overview_viewport.height(ac.overview_drawable.content_div.height()+ac.overview_box.outerHeight());ac.overview_close.show();ac.resize_window()};ac.overview_drawable.request_draw();this.changed()},reset_overview:function(){$(".tooltip").remove();this.overview_viewport.find(".track-tile").remove();this.overview_viewport.height(this.default_overview_height);this.overview_box.height(this.default_overview_height);this.overview_close.hide();this.overview_highlight.hide();view.resize_window();view.overview_drawable=null}});var q=P.Tool.extend({defaults:{track:null},initialize:function(ac){P.Tool.prototype.initialize.call(this,ac);var ad=true;if(ac.tool_state!==undefined&&ac.tool_state.hidden!==undefined){ad=ac.tool_state.hidden}this.set("hidden",ad);this.remove_inputs(["data","hidden_data","conditional"])},state_dict:function(ac){return ab.extend(this.get_inputs_dict(),{hidden:!this.is_visible()})}});var t=Backbone.View.extend({events:{"change :input":"update_value"},render:function(){var ae=this.$el.addClass("param-row"),af=this.model;var ac=$("<div>").addClass("param-label").text(af.get("label")).appendTo(ae);var ad=$("<div/>").addClass("param-input").html(af.get("html")).appendTo(ae);ad.find(":input").val(af.get("value"));$("<div style='clear: both;'/>").appendTo(ae)},update_value:function(ac){this.model.set_value($(ac.target).val())}});var aa=Backbone.View.extend({initialize:function(ac){this.model.on("change:hidden",this.set_visible,this)},render:function(){var ad=this;tool=this.model,parent_div=this.$el.addClass("dynamic-tool").hide();parent_div.bind("drag",function(ah){ah.stopPropagation()}).click(function(ah){ah.stopPropagation()}).bind("dblclick",function(ah){ah.stopPropagation()}).keydown(function(ah){ah.stopPropagation()});var ae=$("<div class='tool-name'>").appendTo(parent_div).text(tool.get("name"));tool.get("inputs").each(function(ai){var ah=new t({model:ai});ah.render();parent_div.append(ah.$el)});parent_div.find("input").click(function(){$(this).select()});var af=$("<div>").addClass("param-row").appendTo(parent_div);var ag=$("<input type='submit'>").attr("value","Run on complete dataset").appendTo(af);var ac=$("<input type='submit'>").attr("value","Run on visible region").appendTo(af);ac.click(function(){ad.run_on_region()});ag.click(function(){ad.run_on_dataset()});if(tool.is_visible()){this.$el.show()}},set_visible:function(){this.$el.toggle(this.model.is_visible())},update_params:function(){for(var ac=0;ac<this.params.length;ac++){this.params[ac].update_value()}},run_on_dataset:function(){var ac=this.model;this.run({target_dataset_id:this.model.get("track").dataset.id,action:"rerun",tool_id:ac.id},null,function(ad){Galaxy.modal.show({title:ac.get("name")+" is Running",body:ac.get("name")+" is running on the complete dataset. Tool outputs are in dataset's history.",buttons:{Close:function(){Galaxy.modal.hide()}}})})},run_on_region:function(){var ad=this.model.get("track"),ag=this.model,ai=new w.GenomeRegion({chrom:ad.view.chrom,start:ad.view.low,end:ad.view.high}),aj={target_dataset_id:ad.dataset.id,action:"rerun",tool_id:ag.id,regions:[ai.toJSON()]},ah=ad,al=ag.get("name")+ah.tool_region_and_parameters_str(ai),ac;if(ah.container===view){var ak=new N(view,view,{name:ad.config.get_value("name")});var af=ah.container.replace_drawable(ah,ak,false);ak.container_div.insertBefore(ah.view.content_div.children()[af]);ak.add_drawable(ah);ah.container_div.appendTo(ak.content_div);ac=ak}else{ac=ah.container}var ae=new ah.constructor(view,ac,{name:al,hda_ldda:"hda"});ae.init_for_tool_data();ae.change_mode(ah.mode);ae.set_filters_manager(ah.filters_manager.copy(ae));ae.update_icons();ac.add_drawable(ae);ae.tiles_div.text("Starting job.");this.run(aj,ae,function(am){ae.set_dataset(new X.Dataset(am));ae.tiles_div.text("Running job.");ae.init()})},run:function(ac,ae,af){ac.inputs=this.model.get_inputs_dict();var ad=new j.ServerStateDeferred({ajax_settings:{url:galaxy_config.root+"api/tools",data:JSON.stringify(ac),dataType:"json",contentType:"application/json",type:"POST"},interval:2000,success_fn:function(ag){return ag!=="pending"}});$.when(ad.go()).then(function(ag){if(ag==="no converter"){ae.container_div.addClass("error");ae.content_div.text(H)}else{if(ag.error){ae.container_div.addClass("error");ae.content_div.text(x+ag.message)}else{af(ag)}}})}});var C=function(ac,ad){J.Scaler.call(this,ad);this.filter=ac};C.prototype.gen_val=function(ac){if(this.filter.high===Number.MAX_VALUE||this.filter.low===-Number.MAX_VALUE||this.filter.low===this.filter.high){return this.default_val}return((parseFloat(ac[this.filter.index])-this.filter.low)/(this.filter.high-this.filter.low))};var b=function(ac,af,ag,ad,ae){this.track=ac;this.region=af;this.low=af.get("start");this.high=af.get("end");this.w_scale=ag;this.canvas=ad;this.html_elt=$("<div class='track-tile'/>").append(ad);this.data=ae;this.stale=false};b.prototype.predisplay_actions=function(){};var K=function(ac,af,ag,ad,ae){b.call(this,ac,af,ag,ad,ae)};K.prototype.predisplay_actions=function(){};var M=function(ae,aj,al,ad,ag,ah,am,ac,ai,af,ak){b.call(this,ae,aj,al,ad,ag);this.mode=ah;this.all_slotted=ac;this.feature_mapper=ai;this.has_icons=false;this.incomplete_features=af;this.seq_data=ak};o(M.prototype,b.prototype);M.prototype.predisplay_actions=function(){var ad=this,ac={};if(ad.mode!=="Pack"){return}$(this.html_elt).hover(function(){this.hovered=true;$(this).mousemove()},function(){this.hovered=false;$(this).parents(".track-content").children(".overlay").children(".feature-popup").remove()}).mousemove(function(ao){if(!this.hovered){return}var aj=$(this).offset(),an=ao.pageX-aj.left,am=ao.pageY-aj.top,at=ad.feature_mapper.get_feature_data(an,am),ak=(at?at[0]:null);$(this).parents(".track-content").children(".overlay").children(".feature-popup").each(function(){if(!ak||$(this).attr("id")!==ak.toString()){$(this).remove()}});if(at){var af=ac[ak];if(!af){var ap={name:at[3],start:at[1],end:at[2],strand:at[4]},ai=ad.track.filters_manager.filters,ah;for(var al=0;al<ai.length;al++){ah=ai[al];ap[ah.name]=at[ah.index]}af=$("<div/>").attr("id",ak).addClass("feature-popup");var au=$("<table/>"),ar,aq,av;for(ar in ap){aq=ap[ar];av=$("<tr/>").appendTo(au);$("<th/>").appendTo(av).text(ar);$("<td/>").attr("align","left").appendTo(av).text(typeof(aq)==="number"?U(aq,2):aq)}af.append($("<div class='feature-popup-inner'>").append(au));ac[ak]=af}af.appendTo($(this).parents(".track-content").children(".overlay"));var ag=an+parseInt(ad.html_elt.css("left"),10)-af.width()/2,ae=am+parseInt(ad.html_elt.css("top"),10)+7;af.css("left",ag+"px").css("top",ae+"px")}else{if(!ao.isPropagationStopped()){ao.stopPropagation();$(this).siblings().each(function(){$(this).trigger(ao)})}}}).mouseleave(function(){$(this).parents(".track-content").children(".overlay").children(".feature-popup").remove()})};var f=function(ad,ac,ae){o(ae,{drag_handle_class:"draghandle"});p.call(this,ad,ac,ae);this.dataset=null;if(ae.dataset){this.dataset=(ae.dataset instanceof Backbone.Model?ae.dataset:new X.Dataset(ae.dataset))}this.dataset_check_type="converted_datasets_state";this.data_url_extra_params={};this.data_query_wait=("data_query_wait" in ae?ae.data_query_wait:I);this.data_manager=("data_manager" in ae?ae.data_manager:new w.GenomeDataManager({dataset:this.dataset,genome:new w.Genome({key:ad.dbkey,chroms_info:{chrom_info:ad.chrom_data}}),data_mode_compatible:this.data_and_mode_compatible,can_subset:this.can_subset}));this.min_height_px=16;this.max_height_px=800;this.visible_height_px=this.config.get_value("height");this.content_div=$("<div class='track-content'>").appendTo(this.container_div);if(this.container){this.container.content_div.append(this.container_div);if(!("resize" in ae)||ae.resize){this.add_resize_handle()}}};o(f.prototype,p.prototype,{action_icons_def:[{name:"mode_icon",title:"Set display mode",css_class:"chevron-expand",on_click_fn:function(){}},p.prototype.action_icons_def[0],{name:"overview_icon",title:"Set as overview",css_class:"application-dock-270",on_click_fn:function(ac){ac.view.set_overview(ac)}},p.prototype.action_icons_def[1],{name:"filters_icon",title:"Filters",css_class:"ui-slider-050",on_click_fn:function(ac){if(ac.filters_manager.visible()){ac.filters_manager.clear_filters()}else{ac.filters_manager.init_filters()}ac.filters_manager.toggle()}},{name:"tools_icon",title:"Tool",css_class:"hammer",on_click_fn:function(ac){ac.tool.toggle();if(ac.tool.is_visible()){ac.set_name(ac.config.get_value("name")+ac.tool_region_and_parameters_str())}else{ac.revert_name()}$(".tooltip").remove()}},{name:"param_space_viz_icon",title:"Tool parameter space visualization",css_class:"arrow-split",on_click_fn:function(ac){var af='<strong>Tool</strong>: <%= track.tool.get("name") %><br/><strong>Dataset</strong>: <%= track.config.get_value("name") %><br/><strong>Region(s)</strong>: <select name="regions"><option value="cur">current viewing area</option><option value="bookmarks">bookmarks</option><option value="both">current viewing area and bookmarks</option></select>',ae=ab.template(af,{track:ac});var ah=function(){Galaxy.modal.hide();$(window).unbind("keypress.check_enter_esc")},ad=function(){var aj=$('select[name="regions"] option:selected').val(),al,ai=new w.GenomeRegion({chrom:view.chrom,start:view.low,end:view.high}),ak=ab.map($(".bookmark"),function(am){return new w.GenomeRegion({from_str:$(am).children(".position").text()})});if(aj==="cur"){al=[ai]}else{if(aj==="bookmarks"){al=ak}else{al=[ai].concat(ak)}}Galaxy.modal.hide();window.location.href=galaxy_config.root+"visualization/sweepster?"+$.param({dataset_id:ac.dataset.id,hda_ldda:ac.dataset.get("hda_ldda"),regions:JSON.stringify(new Backbone.Collection(al).toJSON())})},ag=function(ai){if((ai.keyCode||ai.which)===27){ah()}else{if((ai.keyCode||ai.which)===13){ad()}}};Galaxy.modal.show({title:"Visualize tool parameter space and output from different parameter settings?",body:ae,buttons:{No:ah,Yes:ad}})}},p.prototype.action_icons_def[2]],can_draw:function(){return this.dataset&&p.prototype.can_draw.call(this)},build_container_div:function(){return $("<div/>").addClass("track").attr("id","track_"+this.id)},set_dataset:function(ac){this.dataset=ac;this.data_manager.set("dataset",ac)},on_resize:function(){this.request_draw({clear_tile_cache:true})},add_resize_handle:function(){var ac=this;var af=false;var ae=false;var ad=$("<div class='track-resize'>");$(ac.container_div).hover(function(){if(ac.config.get_value("content_visible")){af=true;ad.show()}},function(){af=false;if(!ae){ad.hide()}});ad.hide().bind("dragstart",function(ag,ah){ae=true;ah.original_height=$(ac.content_div).height()}).bind("drag",function(ah,ai){var ag=Math.min(Math.max(ai.original_height+ai.deltaY,ac.min_height_px),ac.max_height_px);$(ac.tiles_div).css("height",ag);ac.visible_height_px=(ac.max_height_px===ag?0:ag);ac.on_resize()}).bind("dragend",function(ag,ah){ac.tile_cache.clear();ae=false;if(!af){ad.hide()}ac.config.set_value("height",ac.visible_height_px);ac.changed()}).appendTo(ac.container_div)},hide_contents:function(){this.tiles_div.hide();this.container_div.find(".yaxislabel, .track-resize").hide()},show_contents:function(){this.tiles_div.show();this.container_div.find(".yaxislabel, .track-resize").show();this.request_draw()},get_type:function(){if(this instanceof W){return"LabelTrack"}else{if(this instanceof B){return"ReferenceTrack"}else{if(this instanceof g){return"LineTrack"}else{if(this instanceof S){return"ReadTrack"}else{if(this instanceof Z){return"VariantTrack"}else{if(this instanceof e){return"CompositeTrack"}else{if(this instanceof c){return"FeatureTrack"}}}}}}}return""},show_message:function(ac){this.tiles_div.remove();return $("<span/>").addClass("message").html(ac).appendTo(this.content_div)},init:function(ae){var ad=this;ad.enabled=false;ad.tile_cache.clear();ad.data_manager.clear();ad.content_div.children().remove();ad.container_div.removeClass("nodata error pending");ad.tiles_div=$("<div/>").addClass("tiles").appendTo(ad.content_div);if(!ad.dataset.id){return}var ac=$.Deferred(),af={hda_ldda:ad.dataset.get("hda_ldda"),data_type:this.dataset_check_type,chrom:ad.view.chrom,retry:ae};$.getJSON(this.dataset.url(),af,function(ag){if(!ag||ag==="error"||ag.kind==="error"){ad.container_div.addClass("error");var ah=ad.show_message(m);if(ag.message){ah.append($("<a href='javascript:void(0);'></a>").text("View error").click(function(){Galaxy.modal.show({title:"Trackster Error",body:"<pre>"+ag.message+"</pre>",buttons:{Close:function(){Galaxy.modal.hide()}}})}));ah.append($("<span/>").text(" "));ah.append($("<a href='javascript:void(0);'></a>").text("Try again").click(function(){ad.init(true)}))}}else{if(ag==="no converter"){ad.container_div.addClass("error");ad.show_message(H)}else{if(ag==="no data"||(ag.data!==undefined&&(ag.data===null||ag.data.length===0))){ad.container_div.addClass("nodata");ad.show_message(E)}else{if(ag==="pending"){ad.container_div.addClass("pending");ad.show_message(u);setTimeout(function(){ad.init()},ad.data_query_wait)}else{if(ag==="data"||ag.status==="data"){if(ag.valid_chroms){ad.valid_chroms=ag.valid_chroms;ad.update_icons()}ad.tiles_div.text(T);if(ad.view.chrom){ad.tiles_div.text("");ad.tiles_div.css("height",ad.visible_height_px+"px");ad.enabled=true;$.when.apply($,ad.predraw_init()).done(function(){ac.resolve();ad.container_div.removeClass("nodata error pending");ad.request_draw()})}else{ac.resolve()}}}}}}});this.update_icons();return ac},predraw_init:function(){var ac=this;return $.getJSON(ac.dataset.url(),{data_type:"data",stats:true,chrom:ac.view.chrom,low:0,high:ac.view.max_high,hda_ldda:ac.dataset.get("hda_ldda")},function(ad){var af=ad.data;if(af&&af.min&&af.max){var ae=af.min,ag=af.max;ae=Math.floor(Math.min(0,Math.max(ae,af.mean-2*af.sd)));ag=Math.ceil(Math.max(0,Math.min(ag,af.mean+2*af.sd)));ac.config.set_default_value("min_value",ae);ac.config.set_default_value("max_value",ag);ac.config.set_value("min_value",ae);ac.config.set_value("max_value",ag)}})},get_drawables:function(){return this}});var L=function(ae,ad,ag){f.call(this,ae,ad,ag);var ac=this;k(ac.container_div,ac.drag_handle_class,".group",ac);this.filters_manager=new h.FiltersManager(this,("filters" in ag?ag.filters:null));this.data_manager.set("filters_manager",this.filters_manager);this.filters_available=false;this.tool=(ag.tool?new q(ab.extend(ag.tool,{track:this,tool_state:ag.tool_state})):null);this.tile_cache=new w.Cache(O);this.left_offset=0;if(this.header_div){this.set_filters_manager(this.filters_manager);if(this.tool){var af=new aa({model:this.tool});af.render();this.dynamic_tool_div=af.$el;this.header_div.after(this.dynamic_tool_div)}}this.tiles_div=$("<div/>").addClass("tiles").appendTo(this.content_div);if(!this.config.get_value("content_visible")){this.tiles_div.hide()}this.overlay_div=$("<div/>").addClass("overlay").appendTo(this.content_div);if(ag.mode){this.change_mode(ag.mode)}};o(L.prototype,p.prototype,f.prototype,{action_icons_def:f.prototype.action_icons_def.concat([{name:"show_more_rows_icon",title:"To minimize track height, not all feature rows are displayed. Click to display more rows.",css_class:"exclamation",on_click_fn:function(ac){$(".tooltip").remove();ac.slotters[ac.view.resolution_px_b].max_rows*=2;ac.request_draw({clear_tile_cache:true})},hide:true}]),copy:function(ac){var ad=this.to_dict();o(ad,{data_manager:this.data_manager});var ae=new this.constructor(this.view,ac,ad);ae.change_mode(this.mode);ae.enabled=this.enabled;return ae},set_filters_manager:function(ac){this.filters_manager=ac;this.header_div.after(this.filters_manager.parent_div)},to_dict:function(){return{track_type:this.get_type(),dataset:{id:this.dataset.id,hda_ldda:this.dataset.get("hda_ldda")},prefs:this.config.to_key_value_dict(),mode:this.mode,filters:this.filters_manager.to_dict(),tool_state:(this.tool?this.tool.state_dict():{})}},set_min_max:function(){var ac=this;return $.getJSON(ac.dataset.url(),{data_type:"data",stats:true,chrom:ac.view.chrom,low:0,high:ac.view.max_high,hda_ldda:ac.dataset.get("hda_ldda")},function(ad){var af=ad.data;if(isNaN(parseFloat(ac.config.get_value("min_value")))||isNaN(parseFloat(ac.config.get_value("max_value")))){var ae=af.min,ag=af.max;ae=Math.floor(Math.min(0,Math.max(ae,af.mean-2*af.sd)));ag=Math.ceil(Math.max(0,Math.min(ag,af.mean+2*af.sd)));ac.config.set_value("min_value",ae);ac.config.set_value("max_value",ag)}})},change_mode:function(ad){var ac=this;ac.mode=ad;ac.config.set_value("mode",ad);if(ad==="Auto"){this.data_manager.clear()}ac.request_draw({clear_tile_cache:true});this.action_icons.mode_icon.attr("title","Set display mode (now: "+ac.mode+")");return ac},update_icons:function(){var ac=this;ac.action_icons.filters_icon.toggle(ac.filters_available);ac.action_icons.tools_icon.toggle(ac.tool!==null);ac.action_icons.param_space_viz_icon.toggle(ac.tool!==null)},_gen_tile_cache_key:function(ad,ac){return ad+"_"+ac},request_draw:function(ac){if(ac&&ac.clear_tile_cache){this.tile_cache.clear()}this.view.request_redraw(ac,this)},before_draw:function(){this.max_height_px=0},_draw:function(aq){if(!this.can_draw()){return}var an=aq&&aq.clear_after,al=this.view.low,ag=this.view.high,aj=ag-al,ad=this.view.container.width(),ap=this.view.resolution_px_b,af=1/ap;if(this.is_overview){al=this.view.max_low;ag=this.view.max_high;ap=ad/(view.max_high-view.max_low);af=1/ap}this.before_draw();this.tiles_div.children().addClass("remove");var ac=Math.floor(al/(af*Q)),ak,am,ah,ai=[],ao=[];while((ac*Q*af)<ag){ak=Math.floor(ac*Q*af);am=new w.GenomeRegion({chrom:this.view.chrom,start:ak,end:Math.min(ak+Math.ceil(Q*af),this.view.max_high)});ah=this.draw_helper(am,ap,aq);ai.push(ah);$.when(ah).then(function(ar){ao.push(ar)});ac+=1}if(!an){this.tiles_div.children(".remove").removeClass("remove").remove()}var ae=this;$.when.apply($,ai).then(function(){ae.tiles_div.children(".remove").remove();ao=ab.filter(ao,function(ar){return ar!==null});if(ao.length!==0){ae.postdraw_actions(ao,ad,ap,an)}})},_add_yaxis_label:function(af,ah){var ad=this,ag=(af==="max"?"top":"bottom"),ai=(af==="max"?"max":"min"),ac=(af==="max"?"max_value":"min_value"),ae=this.container_div.find(".yaxislabel."+ag);ah=ah||function(){ad.request_draw({clear_tile_cache:true})};if(ae.length!==0){ae.text(ad.config.get_value(ac))}else{ae=$("<div/>").text(ad.config.get_value(ac)).make_text_editable({num_cols:12,on_finish:function(aj){$(".tooltip").remove();ad.config.set_value(ac,aj);ah()},help_text:"Set "+ai+" value"}).addClass("yaxislabel "+ag).css("color",this.config.get_value("label_color"));this.container_div.prepend(ae)}},postdraw_actions:function(af,ag,ai,ac){var ae=ab.filter(af,function(aj){return(aj instanceof K)});if(ae.length>0){this.max_height_px=0;var ad=this;ab.each(af,function(aj){if(!(aj instanceof K)){aj.html_elt.remove();ad.draw_helper(aj.region,ai,{force:true,mode:"Coverage"})}});ad._add_yaxis_label("max")}else{this.container_div.find(".yaxislabel").remove();var ah=ab.find(af,function(aj){return aj.has_icons});if(ah){ab.each(af,function(aj){if(!aj.has_icons){aj.html_elt.css("padding-top",D)}})}}},get_mode:function(ac){return this.mode},update_auto_mode:function(ac){},_get_drawables:function(){return[this]},draw_helper:function(al,an,ao){if(!ao){ao={}}var ad=ao.force,ai=ao.mode||this.mode,af=1/an,ae=this,ag=this._get_drawables(),am=this._gen_tile_cache_key(an,al),ah=function(ap){return(ap&&"track" in ap)};var aj=(ad?undefined:ae.tile_cache.get_elt(am));if(aj){if(ah(aj)){ae.show_tile(aj,an)}return aj}if(ao.data_fetch===false){return null}var ak=function(){var ap=(ab.find(A,function(ar){return ar===ai})?"Coverage":ai);var aq=ab.map(ag,function(ar){return ar.data_manager.get_data(al,ap,af,ae.data_url_extra_params)});if(view.reference_track){aq.push(view.reference_track.data_manager.get_data(al,ai,af,view.reference_track.data_url_extra_params))}return aq};var ac=$.Deferred();ae.tile_cache.set_elt(am,ac);$.when.apply($,ak()).then(function(){var ap=ak(),av=ap,aB;if(ab.find(ap,function(aD){return j.is_deferred(aD)})){ae.tile_cache.set_elt(am,undefined);$.when(ae.draw_helper(al,an,ao)).then(function(aD){ac.resolve(aD)});return}if(view.reference_track){aB=view.reference_track.data_manager.subset_entry(ap.pop(),al)}var aw=[],at=[];ab.each(ag,function(aG,aD){var aF=aG.mode,aE=av[aD];if(aF==="Auto"){aF=aG.get_mode(aE);aG.update_auto_mode(aF)}aw.push(aF);at.push(aG.get_canvas_height(aE,aF,an,aq))});var au=ae.view.canvas_manager.new_canvas(),ax=al.get("start"),aC=al.get("end"),ar=0,aq=Math.ceil((aC-ax)*an)+ae.left_offset,az=ab.max(at),ay;au.width=aq;au.height=(ao.height||az);var aA=au.getContext("2d");aA.translate(ae.left_offset,0);if(ag.length>1){aA.globalAlpha=0.5;aA.globalCompositeOperation="source-over"}ab.each(ag,function(aE,aD){ay=aE.draw_tile(av[aD],aA,aw[aD],al,an,aB)});if(ay!==undefined){ae.tile_cache.set_elt(am,ay);ae.show_tile(ay,an)}ac.resolve(ay)});return ac},get_canvas_height:function(ac,ae,af,ad){return this.visible_height_px},_draw_line_track_tile:function(ac,ae,ah,ag,ai){var af=ae.canvas,ad=new J.LinePainter(ac.data,ag.get("start"),ag.get("end"),this.config.to_key_value_dict(),ah);ad.draw(ae,af.width,af.height,ai);return new K(this,ag,ai,af,ac.data)},draw_tile:function(ac,ad,ag,af,ah,ae){},show_tile:function(ae,ah){var ad=this,ac=ae.html_elt;ae.predisplay_actions();var ag=(ae.low-(this.is_overview?this.view.max_low:this.view.low))*ah;if(this.left_offset){ag-=this.left_offset}ac.css("left",ag);if(ac.hasClass("remove")){ac.removeClass("remove")}else{this.tiles_div.append(ac)}ac.css("height","auto");this.max_height_px=Math.max(this.max_height_px,ac.height()-2);ac.parent().children().css("height",this.max_height_px+"px");var af=this.max_height_px;if(this.visible_height_px!==0){af=Math.min(this.max_height_px,this.visible_height_px)}this.tiles_div.css("height",af+"px")},tool_region_and_parameters_str:function(af){var ac=this,ae=(af!==undefined?af.toString():"all"),ad=ab.values(ac.tool.get_inputs_dict()).join(", ");return" - region=["+ae+"], parameters=["+ad+"]"},data_and_mode_compatible:function(ac,ad){if(ad==="Auto"){return true}else{if(ad==="Coverage"){return ac.dataset_type==="bigwig"}else{if(ac.dataset_type==="bigwig"||ac.extra_info==="no_detail"){return false}else{return true}}}},can_subset:function(ac){if(ac.message||ac.extra_info==="no_detail"){return false}else{if(ac.dataset_type==="bigwig"){return(ac.data[1][0]-ac.data[0][0]===1)}}return true},init_for_tool_data:function(){this.data_manager.set("data_type","raw_data");this.data_query_wait=1000;this.dataset_check_type="state"}});var W=function(ad,ac){f.call(this,ad,ac,{resize:false,header:false});this.container_div.addClass("label-track")};o(W.prototype,f.prototype,{init:function(){this.enabled=true},predraw_init:function(){},_draw:function(ag){var ae=this.view,af=ae.high-ae.low,aj=Math.floor(Math.pow(10,Math.floor(Math.log(af)/Math.log(10)))),ac=Math.floor(ae.low/aj)*aj,ah=this.view.container.width(),ad=$("<div/>").addClass("label-container");while(ac<ae.high){var ai=(ac-ae.low)/af*ah;ad.append($("<div/>").addClass("label").text(commatize(ac)).css({left:ai}));ac+=aj}this.content_div.children(":first").remove();this.content_div.append(ad)}});var e=function(ad,ac,ag){L.call(this,ad,ac,ag);this.drawables=[];if("drawables" in ag){var af;for(var ae=0;ae<ag.drawables.length;ae++){af=ag.drawables[ae];this.drawables[ae]=n(af,ad,null);if(af.left_offset>this.left_offset){this.left_offset=af.left_offset}}this.enabled=true}ab.each(this.drawables,function(ah){if(ah instanceof c||ah instanceof S){ah.change_mode("Coverage")}});this.update_icons();this.obj_type="CompositeTrack"};o(e.prototype,L.prototype,{display_modes:A,config_params:ab.union(p.prototype.config_params,[{key:"min_value",label:"Min Value",type:"float",default_value:undefined},{key:"max_value",label:"Max Value",type:"float",default_value:undefined},{key:"mode",type:"string",default_value:this.mode,hidden:true},{key:"height",type:"int",default_value:30,hidden:true}]),action_icons_def:[{name:"composite_icon",title:"Show individual tracks",css_class:"layers-stack",on_click_fn:function(ac){$(".tooltip").remove();ac.show_group()}}].concat(L.prototype.action_icons_def),to_dict:y.prototype.to_dict,add_drawable:y.prototype.add_drawable,unpack_drawables:y.prototype.unpack_drawables,config_onchange:function(){this.set_name(this.config.get_value("name"));this.request_draw({clear_tile_cache:true})},on_resize:function(){var ac=this.visible_height_px;ab.each(this.drawables,function(ad){ad.visible_height_px=ac});f.prototype.on_resize.call(this)},change_mode:function(ac){L.prototype.change_mode.call(this,ac);for(var ad=0;ad<this.drawables.length;ad++){this.drawables[ad].change_mode(ac)}},init:function(){var ae=[];for(var ad=0;ad<this.drawables.length;ad++){ae.push(this.drawables[ad].init())}var ac=this;$.when.apply($,ae).then(function(){ac.enabled=true;ac.request_draw()})},update_icons:function(){this.action_icons.filters_icon.hide();this.action_icons.tools_icon.hide();this.action_icons.param_space_viz_icon.hide()},can_draw:p.prototype.can_draw,_get_drawables:function(){return this.drawables},show_group:function(){var af=new N(this.view,this.container,{name:this.config.get_value("name")}),ac;for(var ae=0;ae<this.drawables.length;ae++){ac=this.drawables[ae];ac.update_icons();af.add_drawable(ac);ac.container=af;af.content_div.append(ac.container_div)}var ad=this.container.replace_drawable(this,af,true);af.request_draw({clear_tile_cache:true})},before_draw:function(){var ad=ab.min(ab.map(this.drawables,function(ae){return ae.config.get_value("min_value")})),ac=ab.max(ab.map(this.drawables,function(ae){return ae.config.get_value("max_value")}));this.config.set_value("min_value",ad);this.config.set_value("max_value",ac);ab.each(this.drawables,function(ae){ae.config.set_value("min_value",ad);ae.config.set_value("max_value",ac)})},update_all_min_max:function(){var ad=this,ac=this.config.get_value("min_value"),ae=this.config.get_value("max_value");ab.each(this.drawables,function(af){af.config.set_value("min_value",ac);af.config.set_value("max_value",ae)});this.request_draw({clear_tile_cache:true})},postdraw_actions:function(ai,ac,al,ah){var ag=-1,ae;for(ae=0;ae<ai.length;ae++){var aj=ai[ae].html_elt.find("canvas").height();if(aj>ag){ag=aj}}for(ae=0;ae<ai.length;ae++){var af=ai[ae];if(af.html_elt.find("canvas").height()!==ag){this.draw_helper(af.region,al,{force:true,height:ag});af.html_elt.remove()}}var ad=this,ak=function(){ad.update_all_min_max()};this._add_yaxis_label("min",ak);this._add_yaxis_label("max",ak)}});var B=function(ac){L.call(this,ac,{content_div:ac.top_labeltrack},{resize:false,header:false});this.left_offset=ac.canvas_manager.char_width_px;this.container_div.addClass("reference-track");this.data_url=galaxy_config.root+"api/genomes/"+this.view.dbkey;this.data_url_extra_params={reference:true};this.data_manager=new w.GenomeReferenceDataManager({data_url:this.data_url,can_subset:this.can_subset});this.hide_contents()};o(B.prototype,p.prototype,L.prototype,{config_params:ab.union(p.prototype.config_params,[{key:"height",type:"int",default_value:13,hidden:true}]),init:function(){this.data_manager.clear();this.enabled=true},predraw_init:function(){},can_draw:p.prototype.can_draw,draw_helper:function(af,ah,ad){var ac=this.tiles_div.is(":visible"),ag,ae=null;if(ah>this.view.canvas_manager.char_width_px){this.tiles_div.show();ag=true;ae=L.prototype.draw_helper.call(this,af,ah,ad)}else{ag=false;this.tiles_div.hide()}if(ac!==ag){this.view.resize_viewport()}return ae},can_subset:function(ac){return true},draw_tile:function(ae,ak,af,ah,al){var ad=this.data_manager.subset_entry(ae,ah),aj=ad.data;var ac=ak.canvas;ak.font=ak.canvas.manager.default_font;ak.textAlign="center";for(var ag=0,ai=aj.length;ag<ai;ag++){ak.fillStyle=this.view.get_base_color(aj[ag]);ak.fillText(aj[ag],Math.floor(ag*al),10)}return new b(this,ah,al,ac,ad)}});var g=function(ad,ac,ae){this.mode="Histogram";L.call(this,ad,ac,ae)};o(g.prototype,p.prototype,L.prototype,{display_modes:A,config_params:ab.union(p.prototype.config_params,[{key:"color",label:"Color",type:"color"},{key:"min_value",label:"Min Value",type:"float",default_value:undefined},{key:"max_value",label:"Max Value",type:"float",default_value:undefined},{key:"mode",type:"string",default_value:this.mode,hidden:true},{key:"height",type:"int",default_value:30,hidden:true}]),config_onchange:function(){this.set_name(this.config.get_value("name"));this.request_draw({clear_tile_cache:true})},before_draw:function(){},draw_tile:function(ac,ad,af,ae,ag){return this._draw_line_track_tile(ac,ad,af,ae,ag)},can_subset:function(ac){return(ac.data[1][0]-ac.data[0][0]===1)},postdraw_actions:function(ad,ae,af,ac){this._add_yaxis_label("max");this._add_yaxis_label("min")}});var r=function(ad,ac,ae){this.mode="Heatmap";L.call(this,ad,ac,ae)};o(r.prototype,p.prototype,L.prototype,{display_modes:["Heatmap"],config_params:ab.union(p.prototype.config_params,[{key:"pos_color",label:"Positive Color",type:"color",default_value:"#FF8C00"},{key:"neg_color",label:"Negative Color",type:"color",default_value:"#4169E1"},{key:"min_value",label:"Min Value",type:"float",default_value:-1},{key:"max_value",label:"Max Value",type:"float",default_value:1},{key:"mode",type:"string",default_value:this.mode,hidden:true},{key:"height",type:"int",default_value:500,hidden:true}]),config_onchange:function(){this.set_name(this.config.get_value("name"));this.request_draw({clear_tile_cache:true})},draw_tile:function(ac,ae,ah,ag,ai){var af=ae.canvas,ad=new J.DiagonalHeatmapPainter(ac.data,ag.get("start"),ag.get("end"),this.config.to_key_value_dict(),ah);ad.draw(ae,af.width,af.height,ai);return new b(this,ag,ai,af,ac.data)}});var c=function(ad,ac,ae){L.call(this,ad,ac,ae);this.container_div.addClass("feature-track");this.summary_draw_height=30;this.slotters={};this.start_end_dct={};this.left_offset=200;this.set_painter_from_config()};o(c.prototype,p.prototype,L.prototype,{display_modes:["Auto","Coverage","Dense","Squish","Pack"],config_params:ab.union(p.prototype.config_params,[{key:"block_color",label:"Block color",type:"color"},{key:"reverse_strand_color",label:"Antisense strand color",type:"color"},{key:"label_color",label:"Label color",type:"color",default_value:"black"},{key:"show_counts",label:"Show summary counts",type:"bool",default_value:true,help:"Show the number of items in each bin when drawing summary histogram"},{key:"min_value",label:"Histogram minimum",type:"float",default_value:null,help:"clear value to set automatically"},{key:"max_value",label:"Histogram maximum",type:"float",default_value:null,help:"clear value to set automatically"},{key:"connector_style",label:"Connector style",type:"select",default_value:"fishbones",options:[{label:"Line with arrows",value:"fishbone"},{label:"Arcs",value:"arcs"}]},{key:"mode",type:"string",default_value:this.mode,hidden:true},{key:"height",type:"int",default_value:0,hidden:true}]),config_onchange:function(){this.set_name(this.config.get_value("name"));this.set_painter_from_config();this.request_draw({clear_tile_cache:true})},set_painter_from_config:function(){if(this.config.get_value("connector_style")==="arcs"){this.painter=J.ArcLinkedFeaturePainter}else{this.painter=J.LinkedFeaturePainter}},postdraw_actions:function(ao,af,aq,an){L.prototype.postdraw_actions.call(this,ao,af,aq,an);var ah=this,ai,am=ab.filter(ao,function(ar){return(ar instanceof K)});if(am.length===0){var ac={};ab.each(ab.pluck(ao,"incomplete_features"),function(ar){ab.each(ar,function(at){ac[at[0]]=at})});var ap=this;ab.each(ao,function(ar){ap.draw_tile({data:ab.values(ac)},ar.canvas.getContext("2d"),ar.mode,ar.region,aq,ar.seq_data,true)})}if(ah.filters_manager){var ag=ah.filters_manager.filters,ak;for(ak=0;ak<ag.length;ak++){ag[ak].update_ui_elt()}var aj=false,al,ae;for(ai=0;ai<ao.length;ai++){if(ao[ai].data.length){al=ao[ai].data[0];for(ak=0;ak<ag.length;ak++){ae=ag[ak];if(ae.applies_to(al)&&ae.min!==ae.max){aj=true;break}}}}if(ah.filters_available!==aj){ah.filters_available=aj;if(!ah.filters_available){ah.filters_manager.hide()}ah.update_icons()}}if(ao[0] instanceof M){var ad=true;for(ai=0;ai<ao.length;ai++){if(!ao[ai].all_slotted){ad=false;break}}this.action_icons.show_more_rows_icon.toggle(!ad)}else{this.action_icons.show_more_rows_icon.hide()}},update_auto_mode:function(ac){if(this.mode==="Auto"){if(ac==="no_detail"){ac="feature spans"}this.action_icons.mode_icon.attr("title","Set display mode (now: Auto/"+ac+")")}},incremental_slots:function(ag,ac,af){var ad=this.view.canvas_manager.dummy_context,ae=this.slotters[ag];if(!ae||(ae.mode!==af)){ae=new (s.FeatureSlotter)(ag,af,z,function(ah){return ad.measureText(ah)});this.slotters[ag]=ae}return ae.slot_features(ac)},get_mode:function(ac){if(ac.extra_info==="no_detail"||this.is_overview){mode="no_detail"}else{if(this.view.high-this.view.low>G){mode="Squish"}else{mode="Pack"}}return mode},get_canvas_height:function(ac,ag,ah,ad){if(ag==="Coverage"||ac.dataset_type==="bigwig"){return this.summary_draw_height}else{var af=this.incremental_slots(ah,ac.data,ag);var ae=new (this.painter)(null,null,null,this.config.to_key_value_dict(),ag);return Math.max(this.min_height_px,ae.get_required_height(af,ad))}},draw_tile:function(an,at,aq,ag,ak,af,ao){var ar=this,ae=at.canvas,az=ag.get("start"),ad=ag.get("end"),ah=this.left_offset;if(an.dataset_type==="bigwig"){return this._draw_line_track_tile(an,at,aq,ag,ak)}var aj=[],ap=this.slotters[ak].slots;all_slotted=true;if(an.data){var al=this.filters_manager.filters;for(var au=0,aw=an.data.length;au<aw;au++){var ai=an.data[au];var av=false;var am;for(var ay=0,aD=al.length;ay<aD;ay++){am=al[ay];am.update_attrs(ai);if(!am.keep(ai)){av=true;break}}if(!av){aj.push(ai);if(!(ai[0] in ap)){all_slotted=false}}}}var aC=(this.filters_manager.alpha_filter?new C(this.filters_manager.alpha_filter):null),aA=(this.filters_manager.height_filter?new C(this.filters_manager.height_filter):null),aB=new (this.painter)(aj,az,ad,this.config.to_key_value_dict(),aq,aC,aA,af,function(aE){return ar.view.get_base_color(aE)});var ax=null;at.fillStyle=this.config.get_value("block_color");at.font=at.canvas.manager.default_font;at.textAlign="right";if(an.data){var ac=aB.draw(at,ae.width,ae.height,ak,ap);ax=ac.feature_mapper;incomplete_features=ac.incomplete_features;ax.translation=-ah}if(!ao){return new M(ar,ag,ak,ae,an.data,aq,an.message,all_slotted,ax,incomplete_features,af)}}});var Z=function(ad,ac,ae){L.call(this,ad,ac,ae);this.painter=J.VariantPainter;this.summary_draw_height=30;this.left_offset=30};o(Z.prototype,p.prototype,L.prototype,{display_modes:["Auto","Coverage","Dense","Squish","Pack"],config_params:ab.union(p.prototype.config_params,[{key:"color",label:"Histogram color",type:"color"},{key:"show_sample_data",label:"Show sample data",type:"bool",default_value:true},{key:"show_labels",label:"Show summary and sample labels",type:"bool",default_value:true},{key:"summary_height",label:"Locus summary height",type:"float",default_value:20},{key:"mode",type:"string",default_value:this.mode,hidden:true},{key:"height",type:"int",default_value:0,hidden:true}]),config_onchange:function(){this.set_name(this.config.get_value("name"));this.request_draw({clear_tile_cache:true})},draw_tile:function(ac,af,ah,ag,ai){if(ac.dataset_type==="bigwig"){return this._draw_line_track_tile(ac,af,"Histogram",ag,ai)}else{var ae=this.view,ad=new (this.painter)(ac.data,ag.get("start"),ag.get("end"),this.config.to_key_value_dict(),ah,function(aj){return ae.get_base_color(aj)});ad.draw(af,af.canvas.width,af.canvas.height,ai);return new b(this,ag,ai,af.canvas,ac.data)}},get_canvas_height:function(ac,ag,ah,ae){if(ac.dataset_type==="bigwig"){return this.summary_draw_height}else{var ad=(this.dataset.get_metadata("sample_names")?this.dataset.get_metadata("sample_names").length:0);if(ad===0&&ac.data.length!==0){ad=ac.data[0][7].match(/,/g);if(ad===null){ad=1}else{ad=ad.length+1}}var af=new (this.painter)(null,null,null,this.config.to_key_value_dict(),ag);return af.get_required_height(ad)}},predraw_init:function(){var ac=[f.prototype.predraw_init.call(this)];if(!this.dataset.get_metadata("sample_names")){ac.push(this.dataset.fetch())}return ac},postdraw_actions:function(ag,ah,aj,ad){L.prototype.postdraw_actions.call(this,ag,ah,aj,ad);var af=ab.filter(ag,function(ak){return(ak instanceof K)});var ae=this.dataset.get_metadata("sample_names");if(af.length===0&&this.config.get_value("show_labels")&&ae&&ae.length>1){var ac;if(this.container_div.find(".yaxislabel.variant").length===0){ac=this.config.get_value("summary_height")/2;this.tiles_div.prepend($("<div/>").text("Summary").addClass("yaxislabel variant top").css({"font-size":ac+"px",top:(this.config.get_value("summary_height")-ac)/2+"px"}));if(this.config.get_value("show_sample_data")){var ai=ae.join("<br/>");this.tiles_div.prepend($("<div/>").html(ai).addClass("yaxislabel variant top sample").css({top:this.config.get_value("summary_height")}))}}ac=(this.mode==="Squish"?5:10)+"px";$(this.tiles_div).find(".sample").css({"font-size":ac,"line-height":ac});$(this.tiles_div).find(".yaxislabel").css("color",this.config.get_value("label_color"))}else{this.container_div.find(".yaxislabel.variant").remove()}}});var S=function(ad,ac,ae){c.call(this,ad,ac,ae);this.painter=J.ReadPainter;this.update_icons()};o(S.prototype,p.prototype,L.prototype,c.prototype,{config_params:ab.union(p.prototype.config_params,[{key:"block_color",label:"Histogram color",type:"color"},{key:"detail_block_color",label:"Sense strand block color",type:"color",default_value:"#AAAAAA"},{key:"reverse_strand_color",label:"Antisense strand block color",type:"color",default_value:"#DDDDDD"},{key:"label_color",label:"Label color",type:"color",default_value:"black"},{key:"show_insertions",label:"Show insertions",type:"bool",default_value:false},{key:"show_differences",label:"Show differences only",type:"bool",default_value:true},{key:"show_counts",label:"Show summary counts",type:"bool",default_value:true},{key:"mode",type:"string",default_value:this.mode,hidden:true},{key:"min_value",label:"Histogram minimum",type:"float",default_value:null,help:"clear value to set automatically"},{key:"max_value",label:"Histogram maximum",type:"float",default_value:null,help:"clear value to set automatically"},{key:"height",type:"int",default_value:0,hidden:true}]),config_onchange:function(){this.set_name(this.config.get_value("name"));this.request_draw({clear_tile_cache:true})}});var d={CompositeTrack:e,DrawableGroup:N,DiagonalHeatmapTrack:r,FeatureTrack:c,LineTrack:g,ReadTrack:S,VariantTrack:Z,VcfTrack:Z};var n=function(ae,ad,ac){if("copy" in ae){return ae.copy(ac)}else{var af=ae.obj_type;if(!af){af=ae.track_type}return new d[af](ad,ac,ae)}};return{TracksterView:Y,DrawableGroup:N,LineTrack:g,FeatureTrack:c,DiagonalHeatmapTrack:r,ReadTrack:S,VariantTrack:Z,CompositeTrack:e,object_from_template:n}}); \ No newline at end of file diff -r 83a3792548db71c8bf69e278bf745bc5df123db7 -r 50a273de6cd76b770eb78861fee2b0a97621fa3b static/scripts/packed/viz/trackster_ui.js --- a/static/scripts/packed/viz/trackster_ui.js +++ b/static/scripts/packed/viz/trackster_ui.js @@ -1,1 +1,1 @@ -define(["base","libs/underscore","viz/trackster/slotting","viz/trackster/painters","viz/trackster/tracks","viz/visualization"],function(a,f,e,c,d,h){var j=d.object_from_template;var b=function(l,k){if(!k){k={}}var m=new IconButtonCollection(f.map(l,function(n){return new IconButton(f.extend(n,k))}));return new IconButtonMenuView({collection:m})};var g=a.Base.extend({initialize:function(k){this.baseURL=k},createButtonMenu:function(){var k=this,l=b([{icon_class:"plus-button",title:"Add tracks",on_click:function(){h.select_datasets(galaxy_config.root+"visualization/list_current_history_datasets",galaxy_config.root+"api/datasets",{"f-dbkey":view.dbkey},function(m){f.each(m,function(n){view.add_drawable(j(n,view,view))})})}},{icon_class:"block--plus",title:"Add group",on_click:function(){view.add_drawable(new d.DrawableGroup(view,view,{name:"New Group"}))}},{icon_class:"bookmarks",title:"Bookmarks",on_click:function(){force_right_panel(($("div#right").css("right")=="0px"?"hide":"show"))}},{icon_class:"globe",title:"Circster",on_click:function(){window.location=k.baseURL+"visualization/circster?id="+view.vis_id}},{icon_class:"disk--arrow",title:"Save",on_click:function(){Galaxy.modal.show({title:"Saving...",body:"progress"});var m=[];$(".bookmark").each(function(){m.push({position:$(this).children(".position").text(),annotation:$(this).children(".annotation").text()})});var n=(view.overview_drawable?view.overview_drawable.config.get_value("name"):null),o={view:view.to_dict(),viewport:{chrom:view.chrom,start:view.low,end:view.high,overview:n},bookmarks:m};$.ajax({url:galaxy_config.root+"visualization/save",type:"POST",dataType:"json",data:{id:view.vis_id,title:view.config.get_value("name"),dbkey:view.dbkey,type:"trackster",vis_json:JSON.stringify(o)}}).success(function(p){Galaxy.modal.hide();view.vis_id=p.vis_id;view.has_changes=false;window.history.pushState({},"",p.url+window.location.hash)}).error(function(){Galaxy.modal.show({title:"Could Not Save",body:"Could not save visualization. Please try again later.",buttons:{Cancel:function(){Galaxy.modal.hide()}}})})}},{icon_class:"cross-circle",title:"Close",on_click:function(){window.location=galaxy_config.root+"visualization"}}],{tooltip_config:{placement:"bottom"}});this.buttonMenu=l;return l},add_bookmarks:function(){var k=this,l=this.baseURL;Galaxy.modal.show({title:"Select dataset for new bookmarks",body:"progress"});$.ajax({url:this.baseURL+"/visualization/list_histories",data:{"f-dbkey":view.dbkey},error:function(){alert("Grid failed")},success:function(m){Galaxy.modal.show({title:"Select dataset for new bookmarks",body:m,buttons:{Cancel:function(){Galaxy.modal.hide()},Insert:function(){$("input[name=id]:checked,input[name=ldda_ids]:checked").first().each(function(){var n,o=$(this).val();if($(this).attr("name")==="id"){n={hda_id:o}}else{n={ldda_id:o}}$.ajax({url:this.baseURL+"/visualization/bookmarks_from_dataset",data:n,dataType:"json"}).then(function(p){for(i=0;i<p.data.length;i++){var q=p.data[i];k.add_bookmark(q[0],q[1])}})});Galaxy.modal.hide()}}})}})},add_bookmark:function(o,m,k){var q=$("#right .unified-panel-body"),s=$("<div/>").addClass("bookmark").appendTo(q);var t=$("<div/>").addClass("position").appendTo(s),p=$("<a href=''/>").text(o).appendTo(t).click(function(){view.go_to(o);return false}),n=$("<div/>").text(m).appendTo(s);if(k){var r=$("<div/>").addClass("delete-icon-container").prependTo(s).click(function(){s.slideUp("fast");s.remove();view.has_changes=true;return false}),l=$("<a href=''/>").addClass("icon-button delete").appendTo(r);n.make_text_editable({num_rows:3,use_textarea:true,help_text:"Edit bookmark note"}).addClass("annotation")}view.has_changes=true;return s},create_visualization:function(p,k,o,q,n){var m=this,l=new d.TracksterView(p);l.editor=true;$.when(l.load_chroms_deferred).then(function(B){if(k){var z=k.chrom,r=k.start,w=k.end,t=k.overview;if(z&&(r!==undefined)&&w){l.change_chrom(z,r,w)}else{l.change_chrom(B[0].chrom)}}else{l.change_chrom(B[0].chrom)}if(o){var u,s,v;for(var x=0;x<o.length;x++){l.add_drawable(j(o[x],l,l))}}l.update_intro_div();var A;for(var x=0;x<l.drawables.length;x++){if(l.drawables[x].config.get_value("name")===t){l.set_overview(l.drawables[x]);break}}if(q){var y;for(var x=0;x<q.length;x++){y=q[x];m.add_bookmark(y.position,y.annotation,n)}}l.has_changes=false});this.set_up_router({view:l});return l},set_up_router:function(k){new h.TrackBrowserRouter(k);Backbone.history.start()},init_keyboard_nav:function(k){$(document).keyup(function(l){if($(l.srcElement).is(":input")){return}switch(l.which){case 37:k.move_fraction(0.25);break;case 38:var m=Math.round(k.viewport_container.height()/15);k.viewport_container.scrollTop(k.viewport_container.scrollTop()-20);break;case 39:k.move_fraction(-0.25);break;case 40:var m=Math.round(k.viewport_container.height()/15);k.viewport_container.scrollTop(k.viewport_container.scrollTop()+20);break}})}});return{object_from_template:j,TracksterUI:g}}); \ No newline at end of file +define(["base","libs/underscore","viz/trackster/slotting","viz/trackster/painters","viz/trackster/tracks","viz/visualization"],function(a,f,e,c,d,h){var j=d.object_from_template;var b=function(l,k){if(!k){k={}}var m=new IconButtonCollection(f.map(l,function(n){return new IconButton(f.extend(n,k))}));return new IconButtonMenuView({collection:m})};var g=a.Base.extend({initialize:function(k){this.baseURL=k},createButtonMenu:function(){var k=this,l=b([{icon_class:"plus-button",title:"Add tracks",on_click:function(){h.select_datasets(galaxy_config.root+"visualization/list_current_history_datasets",galaxy_config.root+"api/datasets",{"f-dbkey":view.dbkey},function(m){f.each(m,function(n){view.add_drawable(j(n,view,view))})})}},{icon_class:"block--plus",title:"Add group",on_click:function(){view.add_drawable(new d.DrawableGroup(view,view,{name:"New Group"}))}},{icon_class:"bookmarks",title:"Bookmarks",on_click:function(){force_right_panel(($("div#right").css("right")=="0px"?"hide":"show"))}},{icon_class:"globe",title:"Circster",on_click:function(){window.location=k.baseURL+"visualization/circster?id="+view.vis_id}},{icon_class:"disk--arrow",title:"Save",on_click:function(){Galaxy.modal.show({title:"Saving...",body:"progress"});var m=[];$(".bookmark").each(function(){m.push({position:$(this).children(".position").text(),annotation:$(this).children(".annotation").text()})});var n=(view.overview_drawable?view.overview_drawable.config.get_value("name"):null),o={view:view.to_dict(),viewport:{chrom:view.chrom,start:view.low,end:view.high,overview:n},bookmarks:m};$.ajax({url:galaxy_config.root+"visualization/save",type:"POST",dataType:"json",data:{id:view.vis_id,title:view.config.get_value("name"),dbkey:view.dbkey,type:"trackster",vis_json:JSON.stringify(o)}}).success(function(p){Galaxy.modal.hide();view.vis_id=p.vis_id;view.has_changes=false;window.history.pushState({},"",p.url+window.location.hash)}).error(function(){Galaxy.modal.show({title:"Could Not Save",body:"Could not save visualization. Please try again later.",buttons:{Cancel:function(){Galaxy.modal.hide()}}})})}},{icon_class:"cross-circle",title:"Close",on_click:function(){window.location=galaxy_config.root+"visualization"}}],{tooltip_config:{placement:"bottom"}});this.buttonMenu=l;return l},add_bookmarks:function(){var k=this,l=this.baseURL;Galaxy.modal.show({title:"Select dataset for new bookmarks",body:"progress"});$.ajax({url:this.baseURL+"/visualization/list_histories",data:{"f-dbkey":view.dbkey},error:function(){alert("Grid failed")},success:function(m){Galaxy.modal.show({title:"Select dataset for new bookmarks",body:m,buttons:{Cancel:function(){Galaxy.modal.hide()},Insert:function(){$("input[name=id]:checked,input[name=ldda_ids]:checked").first().each(function(){var n,o=$(this).val();if($(this).attr("name")==="id"){n={hda_id:o}}else{n={ldda_id:o}}$.ajax({url:this.baseURL+"/visualization/bookmarks_from_dataset",data:n,dataType:"json"}).then(function(p){for(i=0;i<p.data.length;i++){var q=p.data[i];k.add_bookmark(q[0],q[1])}})});Galaxy.modal.hide()}}})}})},add_bookmark:function(o,m,k){var q=$("#right .unified-panel-body"),s=$("<div/>").addClass("bookmark").appendTo(q);var t=$("<div/>").addClass("position").appendTo(s),p=$("<a href=''/>").text(o).appendTo(t).click(function(){view.go_to(o);return false}),n=$("<div/>").text(m).appendTo(s);if(k){var r=$("<div/>").addClass("delete-icon-container").prependTo(s).click(function(){s.slideUp("fast");s.remove();view.has_changes=true;return false}),l=$("<a href=''/>").addClass("icon-button delete").appendTo(r);n.make_text_editable({num_rows:3,use_textarea:true,help_text:"Edit bookmark note"}).addClass("annotation")}view.has_changes=true;return s},create_visualization:function(p,k,o,q,n){var m=this,l=new d.TracksterView(f.extend(p,{header:false}));l.editor=true;$.when(l.load_chroms_deferred).then(function(B){if(k){var z=k.chrom,r=k.start,w=k.end,t=k.overview;if(z&&(r!==undefined)&&w){l.change_chrom(z,r,w)}else{l.change_chrom(B[0].chrom)}}else{l.change_chrom(B[0].chrom)}if(o){var u,s,v;for(var x=0;x<o.length;x++){l.add_drawable(j(o[x],l,l))}}l.update_intro_div();var A;for(var x=0;x<l.drawables.length;x++){if(l.drawables[x].config.get_value("name")===t){l.set_overview(l.drawables[x]);break}}if(q){var y;for(var x=0;x<q.length;x++){y=q[x];m.add_bookmark(y.position,y.annotation,n)}}l.has_changes=false});this.set_up_router({view:l});return l},set_up_router:function(k){new h.TrackBrowserRouter(k);Backbone.history.start()},init_keyboard_nav:function(k){$(document).keyup(function(l){if($(l.srcElement).is(":input")){return}switch(l.which){case 37:k.move_fraction(0.25);break;case 38:var m=Math.round(k.viewport_container.height()/15);k.viewport_container.scrollTop(k.viewport_container.scrollTop()-20);break;case 39:k.move_fraction(-0.25);break;case 40:var m=Math.round(k.viewport_container.height()/15);k.viewport_container.scrollTop(k.viewport_container.scrollTop()+20);break}})}});return{object_from_template:j,TracksterUI:g}}); \ No newline at end of file diff -r 83a3792548db71c8bf69e278bf745bc5df123db7 -r 50a273de6cd76b770eb78861fee2b0a97621fa3b static/scripts/packed/viz/viz_views.js --- /dev/null +++ b/static/scripts/packed/viz/viz_views.js @@ -0,0 +1,1 @@ +define(["libs/underscore"],function(a){var b=Backbone.View.extend({className:"track-header",initialize:function(){this.model.config.get("name").on("change:value",this.update_name,this);this.render()},render:function(){this.$el.append($("<div/>").addClass(this.model.drag_handle_class));this.$el.append($("<div/>").addClass("track-name").text(this.model.config.get_value("name")));this.action_icons={};this.render_action_icons();this.$el.dblclick(function(c){c.stopPropagation()});this.$el.append($("<div style='clear: both'/>"))},update_name:function(){this.$el.find(".track-name").text(this.model.config.get_value("name"))},render_action_icons:function(){var c=this;this.icons_div=$("<div/>").addClass("track-icons").hide().appendTo(this.$el);a.each(this.model.action_icons_def,function(d){c.add_action_icon(d.name,d.title,d.css_class,d.on_click_fn,d.prepend,d.hide)});this.set_display_modes(this.model.display_modes)},add_action_icon:function(e,i,h,g,d,f){var c=this;this.action_icons[e]=$("<a/>").attr("title",i).addClass("icon-button").addClass(h).tooltip().click(function(){g(c.model)}).appendTo(this.icons_div);if(f){this.action_icons[e].hide()}},set_display_modes:function(g,k){if(!g){return}this.model.display_modes=g;this.model.mode=(k||this.model.config.get_value("mode")||this.model.display_modes[0]);this.action_icons.mode_icon.attr("title","Set display mode (now: "+this.mode+")");var e=this,d=this.model,h={};for(var f=0,c=d.display_modes.length;f<c;f++){var j=d.display_modes[f];h[j]=function(i){return function(){d.change_mode(i)}}(j)}make_popupmenu(this.action_icons.mode_icon,h)}});return{TrackHeaderView:b}}); \ No newline at end of file Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: natefoo: In the dynamic job function mapper, get the user directly from the job instead of from the history.
by commits-noreply＠bitbucket.org 09 Jul '14

09 Jul '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/83a3792548db/ Changeset: 83a3792548db User: natefoo Date: 2014-07-09 19:10:43 Summary: In the dynamic job function mapper, get the user directly from the job instead of from the history. Affected #: 1 file diff -r cbe3fe407093b0161469e1de662623d1d13bf532 -r 83a3792548db71c8bf69e278bf745bc5df123db7 lib/galaxy/jobs/mapper.py --- a/lib/galaxy/jobs/mapper.py +++ b/lib/galaxy/jobs/mapper.py @@ -83,7 +83,7 @@ if "job" in function_arg_names or "user" in function_arg_names or "user_email" in function_arg_names or "resource_params" in function_arg_names: job = self.job_wrapper.get_job() history = job.history - user = history and history.user + user = job.user user_email = user and str(user.email) if "job" in function_arg_names: Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: 2 new changesets
by commits-noreply＠bitbucket.org 09 Jul '14

09 Jul '14

2 new commits in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/5a5f22a64812/ Changeset: 5a5f22a64812 User: jgoecks Date: 2014-07-09 17:46:31 Summary: Trackster: truncate long track names. Affected #: 2 files diff -r d1d5fcd5bec6d4d48908f6da58a31ca9242e694e -r 5a5f22a6481261d44ac2b4c308dbbfa87c93a457 static/style/blue/trackster.css --- a/static/style/blue/trackster.css +++ b/static/style/blue/trackster.css @@ -22,6 +22,7 @@ .group-handle{cursor:move;float:left;background:#eee url('../images/tracks/block.png');width:12px;height:12px} .group{min-height:20px;border-top:1px solid #888;border-bottom:1px solid #888}.group>.track-header{position:relative;float:left} .track-header{height:16px;position:absolute;z-index:2;background-color:rgba(1,1,1,0.1);border-radius:5px;padding:0px 2px;text-align:left;margin:2px;}.track-header:hover{background-color:#DDDDDD} +.track-header .track-name{max-width:200px;white-space:nowrap;overflow:hidden;text-overflow:ellipsis} .track-header .menubutton{margin-left:0px} .track-name{float:left;margin-top:2px} .tiles{background:url('../images/tracks/diag_bg.gif');position:relative;overflow:hidden} diff -r d1d5fcd5bec6d4d48908f6da58a31ca9242e694e -r 5a5f22a6481261d44ac2b4c308dbbfa87c93a457 static/style/src/less/trackster.less --- a/static/style/src/less/trackster.less +++ b/static/style/src/less/trackster.less @@ -200,6 +200,14 @@ background-color: #DDDDDD; } + // Truncate long track names. + .track-name { + max-width: 200px; + white-space: nowrap; + overflow: hidden; + text-overflow: ellipsis; + } + .menubutton { margin-left: 0px; } https://bitbucket.org/galaxy/galaxy-central/commits/cbe3fe407093/ Changeset: cbe3fe407093 User: jgoecks Date: 2014-07-09 17:46:51 Summary: Automated merge Affected #: 4 files diff -r 5a5f22a6481261d44ac2b4c308dbbfa87c93a457 -r cbe3fe407093b0161469e1de662623d1d13bf532 lib/tool_shed/galaxy_install/install_manager.py --- a/lib/tool_shed/galaxy_install/install_manager.py +++ b/lib/tool_shed/galaxy_install/install_manager.py @@ -44,7 +44,8 @@ def __init__( self, app ): self.app = app - self.INSTALL_ACTIONS = [ 'download_binary', 'download_by_url', 'download_file', 'setup_perl_environment', + self.INSTALL_ACTIONS = [ 'download_binary', 'download_by_url', 'download_file', + 'setup_perl_environment', 'setup_python_environment', 'setup_r_environment', 'setup_ruby_environment', 'shell_command' ] def format_traceback( self ): diff -r 5a5f22a6481261d44ac2b4c308dbbfa87c93a457 -r cbe3fe407093b0161469e1de662623d1d13bf532 lib/tool_shed/galaxy_install/tool_dependencies/env_manager.py --- a/lib/tool_shed/galaxy_install/tool_dependencies/env_manager.py +++ b/lib/tool_shed/galaxy_install/tool_dependencies/env_manager.py @@ -124,7 +124,7 @@ Parse an XML tag set to discover all child repository dependency tags and define the path to an env.sh file associated with the repository (this requires the repository dependency to be in an installed state). The received action_dict will be updated with these discovered paths and returned to the caller. This method handles tool dependency definition - tag sets <setup_r_environment>, <setup_ruby_environment> and <setup_perl_environment>. + tag sets <setup_r_environment>, <setup_ruby_environment>, <setup_python_environment> and <setup_perl_environment>. """ # An example elem is: # <action type="setup_perl_environment"> diff -r 5a5f22a6481261d44ac2b4c308dbbfa87c93a457 -r cbe3fe407093b0161469e1de662623d1d13bf532 lib/tool_shed/galaxy_install/tool_dependencies/recipe/recipe_manager.py --- a/lib/tool_shed/galaxy_install/tool_dependencies/recipe/recipe_manager.py +++ b/lib/tool_shed/galaxy_install/tool_dependencies/recipe/recipe_manager.py @@ -54,6 +54,7 @@ setup_perl_environment=step_handler.SetupPerlEnvironment( self.app ), setup_r_environment=step_handler.SetupREnvironment( self.app ), setup_ruby_environment=step_handler.SetupRubyEnvironment( self.app ), + setup_python_environment=step_handler.SetupPythonEnvironment( self.app ), setup_virtualenv=step_handler.SetupVirtualEnv( self.app ), shell_command=step_handler.ShellCommand( self.app ), template_command=step_handler.TemplateCommand( self.app ) ) diff -r 5a5f22a6481261d44ac2b4c308dbbfa87c93a457 -r cbe3fe407093b0161469e1de662623d1d13bf532 lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py --- a/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py +++ b/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py @@ -8,6 +8,7 @@ import time import urllib2 import zipfile +import hashlib from galaxy.util import asbool from galaxy.util.template import fill_template @@ -139,10 +140,29 @@ class Download( object ): def url_download( self, install_dir, downloaded_file_name, download_url, extract=True ): + """ + The given download_url can have an extension like #md5# or #sha256#. + This indicates a checksum which will be chekced after download. + If the checksum does not match an exception is thrown. + + https://pypi.python.org/packages/source/k/khmer/khmer-1.0.tar.gz#md5#b60639… + """ + file_path = os.path.join( install_dir, downloaded_file_name ) src = None dst = None + checksum = None + sha256 = False + md5 = False # Set a timer so we don't sit here forever. + + if '#md5#' in download_url: + md5 = True + download_url, checksum = download_url.split('#md5#') + elif '#sha256#' in download_url: + sha256 = True + download_url, checksum = download_url.split('#sha256#') + start_time = time.time() try: src = urllib2.urlopen( download_url ) @@ -166,6 +186,18 @@ src.close() if dst: dst.close() + + try: + if sha256: + downloaded_checksum = hashlib.sha256(open(file_path, 'rb').read()).hexdigest() + elif md5: + downloaded_checksum = hashlib.md5(open(file_path, 'rb').read()).hexdigest() + + if checksum and downloaded_checksum != checksum: + raise Exception( 'Given checksum does not match with the one from the downloaded file (%s).' % (downloaded_checksum) ) + except Exception, e: + raise + if extract: if tarfile.is_tarfile( file_path ) or ( zipfile.is_zipfile( file_path ) and not file_path.endswith( '.jar' ) ): archive = CompressedFile( file_path ) @@ -174,6 +206,7 @@ extraction_path = os.path.abspath( install_dir ) else: extraction_path = os.path.abspath( install_dir ) + return extraction_path @@ -1390,6 +1423,139 @@ return action_dict +class SetupPythonEnvironment( Download, RecipeStep ): + + def __init__( self, app ): + self.app = app + self.type = 'setup_python_environment' + + def execute_step( self, tool_dependency, package_name, actions, action_dict, filtered_actions, env_file_builder, + install_environment, work_dir, current_dir=None, initial_download=False ): + """ + Initialize the environment for installing Python packages. The class is called during the initial + download stage when installing packages, so the value of initial_download will generally be True. + However, the parameter value allows this class to also be used in the second stage of the installation, + although it may never be necessary. If initial_download is True, the recipe steps will be filtered + and returned and the installation directory (i.e., dir) will be defined and returned. If we're not + in the initial download stage, these actions will not occur, and None values will be returned for them. + + Warning: easy_install is configured that it will not be install any dependency, the tool developer needs + to specify every dependency explicitly + """ + # <action type="setup_python_environment"> + # <repository name="package_python_2_7" owner="bgruening"> + # <package name="python" version="2.7" /> + # </repository> + #  + # <package>pysam.tar.gz</package> + # <package>http://url-to-some-python-package.de/pysam.tar.gz</package> + # </action> + dir = None + if initial_download: + filtered_actions = actions[ 1: ] + env_shell_file_paths = action_dict.get( 'env_shell_file_paths', None ) + if env_shell_file_paths is None: + log.debug( 'Missing Python environment, make sure your specified Python installation exists.' ) + if initial_download: + return tool_dependency, filtered_actions, dir + return tool_dependency, None, None + else: + install_environment.add_env_shell_file_paths( env_shell_file_paths ) + log.debug( 'Handling setup_python_environment for tool dependency %s with install_environment.env_shell_file_paths:\n%s' % \ + ( str( tool_dependency.name ), str( install_environment.env_shell_file_paths ) ) ) + dir = os.path.curdir + current_dir = os.path.abspath( os.path.join( work_dir, dir ) ) + with lcd( current_dir ): + with settings( warn_only=True ): + python_package_tups = action_dict.get( 'python_package_tups', [] ) + for python_package_tup in python_package_tups: + package, package_version = python_package_tup + package_path = os.path.join( install_environment.tool_shed_repository_install_dir, package ) + if os.path.isfile( package_path ): + # we assume a local shipped python package + + cmd = r'''PATH=$PATH:$PYTHONHOME/bin; export PATH; + export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR; + easy_install --no-deps --install-dir $INSTALL_DIR --script-dir $INSTALL_DIR/bin %s + ''' % ( package_path ) + elif package.find( '://' ) != -1: + # We assume a URL to a python package. + url = package + package_name = url.split( '/' )[ -1 ] + self.url_download( work_dir, package_name, url, extract=False ) + + cmd = r'''PATH=$PATH:$PYTHONHOME/bin; export PATH; + export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR; + easy_install --no-deps --install-dir $INSTALL_DIR --script-dir $INSTALL_DIR/bin %s + ''' % ( package_name ) + else: + pass + # pypi can be implemented or for > python3.4 we can use the build-in system + cmd = install_environment.build_command( basic_util.evaluate_template( cmd, install_environment ) ) + return_code = install_environment.handle_command( tool_dependency=tool_dependency, + cmd=cmd, + return_output=False ) + if return_code: + if initial_download: + return tool_dependency, filtered_actions, dir + return tool_dependency, None, None + # Pull in python dependencies (runtime). + env_file_builder.handle_action_shell_file_paths( action_dict ) + env_file_builder.append_line( name="PYTHONPATH", + action="prepend_to", + value= os.path.join( install_environment.install_dir, 'lib', 'python') ) + env_file_builder.append_line( name="PATH", + action="prepend_to", + value=os.path.join( install_environment.install_dir, 'bin' ) ) + return_code = env_file_builder.return_code + if return_code: + if initial_download: + return tool_dependency, filtered_actions, dir + return tool_dependency, None, None + if initial_download: + return tool_dependency, filtered_actions, dir + return tool_dependency, None, None + + def prepare_step( self, tool_dependency, action_elem, action_dict, install_environment, is_binary_download ): + # setup a Python environment. + # <action type="setup_python_environment"> + # <repository name="package_python_2_7" owner="bgruening"> + # <package name="python" version="2.7" /> + # </repository> + #  + # <package>pysam.tar.gz</package> + # <package>http://url-to-some-python-package.de/pysam.tar.gz</package> + # </action> + # Discover all child repository dependency tags and define the path to an env.sh file + # associated with each repository. This will potentially update the value of the + # 'env_shell_file_paths' entry in action_dict. + all_env_shell_file_paths = [] + env_manager = EnvManager( self.app ) + action_dict = env_manager.get_env_shell_file_paths_from_setup_environment_elem( all_env_shell_file_paths, + action_elem, + action_dict ) + python_package_tups = [] + for env_elem in action_elem: + if env_elem.tag == 'package': + #A valid package definitions can be: + # pysam.tar.gz -> locally shipped tarball + # ftp://ftp.gruening.de/pysam.tar.gz -> online tarball + python_token = env_elem.text.strip().split( '=' ) + if len( python_token ) == 2: + # version string + package_name = python_token[ 0 ] + package_version = python_token[ 1 ] + python_package_tups.append( ( package_name, package_version ) ) + else: + # package name for pypi.org without version number + package = env_elem.text.strip() + python_package_tups.append( ( package, None ) ) + if python_package_tups: + action_dict[ 'python_package_tups' ] = python_package_tups + return action_dict + + + class SetupVirtualEnv( Download, RecipeStep ): def __init__( self, app ): Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: dannon: Close branch tool_shed_checksum
by commits-noreply＠bitbucket.org 09 Jul '14

09 Jul '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/ed443abea720/ Changeset: ed443abea720 Branch: tool_shed_checksum User: dannon Date: 2014-07-09 17:39:45 Summary: Close branch tool_shed_checksum Affected #: 0 files Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: 3 new changesets
by commits-noreply＠bitbucket.org 09 Jul '14

09 Jul '14

3 new commits in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/d1572a4a0f52/ Changeset: d1572a4a0f52 Branch: tool_shed_checksum User: Bjoern Gruening Date: 2014-06-29 21:35:02 Summary: With that PR the Tool Shed will be able to get checksums from the Tool Developer. These checksums will be verified after download and in case of an mismatch an error is thrown. Currently, md5 and sha256 checksums are supported. Example: <package>https://pypi.python.org/packages/source/k/khmer/khmer-1.0.tar.gz#md5=b60639…</package> Affected #: 1 file diff -r 7b424e9c2e57ec12eca26f35c8f4259bbcc55cdb -r d1572a4a0f529fb20f2c7036eb7dfed19563ac89 lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py --- a/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py +++ b/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py @@ -8,6 +8,7 @@ import time import urllib2 import zipfile +import hashlib from galaxy.util import asbool from galaxy.util.template import fill_template @@ -139,10 +140,29 @@ class Download( object ): def url_download( self, install_dir, downloaded_file_name, download_url, extract=True ): + """ + The given download_url can have an extension like #md5# or #sha256#. + This indicates a checksum which will be chekced after download. + If the checksum does not match an exception is thrown. + + https://pypi.python.org/packages/source/k/khmer/khmer-1.0.tar.gz#md5#b60639… + """ + file_path = os.path.join( install_dir, downloaded_file_name ) src = None dst = None + checksum = None + sha256 = False + md5 = False # Set a timer so we don't sit here forever. + + if '#md5#' in download_url: + md5 = True + dowonload_url, checksum = download_url.split('#md5#') + elif '#sha256#' in download_url: + sha256 = True + download_url, checksum = download_url.split('#sha256#') + start_time = time.time() try: src = urllib2.urlopen( download_url ) @@ -166,6 +186,18 @@ src.close() if dst: dst.close() + + try: + if sha256: + downloaded_checksum = hashlib.sha256(open(file_path, 'rb').read()).hexdigest() + elif md5: + downloaded_checksum = hashlib.md5(open(file_path, 'rb').read()).hexdigest() + + if checksum and downloaded_checksum != checksum: + raise Exception( 'Given checksum does not match with the one from the downloaded file (%s).' % (downloaded_checksum) ) + except Exception, e: + raise + if extract: if tarfile.is_tarfile( file_path ) or ( zipfile.is_zipfile( file_path ) and not file_path.endswith( '.jar' ) ): archive = CompressedFile( file_path ) @@ -174,6 +206,7 @@ extraction_path = os.path.abspath( install_dir ) else: extraction_path = os.path.abspath( install_dir ) + return extraction_path @@ -1421,7 +1454,6 @@ if initial_download: filtered_actions = actions[ 1: ] env_shell_file_paths = action_dict.get( 'env_shell_file_paths', None ) - log.debug( '\n%s\n' % env_shell_file_paths ) if env_shell_file_paths is None: log.debug( 'Missing Python environment, make sure your specified Python installation exists.' ) if initial_download: https://bitbucket.org/galaxy/galaxy-central/commits/848a727a1141/ Changeset: 848a727a1141 Branch: tool_shed_checksum User: BjoernGruening Date: 2014-06-29 22:34:56 Summary: spelling fix Affected #: 1 file diff -r d1572a4a0f529fb20f2c7036eb7dfed19563ac89 -r 848a727a1141aa65a0cce41f9c046ff3296bb504 lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py --- a/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py +++ b/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py @@ -158,7 +158,7 @@ if '#md5#' in download_url: md5 = True - dowonload_url, checksum = download_url.split('#md5#') + download_url, checksum = download_url.split('#md5#') elif '#sha256#' in download_url: sha256 = True download_url, checksum = download_url.split('#sha256#') https://bitbucket.org/galaxy/galaxy-central/commits/b86bab7dad7d/ Changeset: b86bab7dad7d User: dannon Date: 2014-07-09 17:39:45 Summary: Merged in BjoernGruening/galaxy-central-bgruening/tool_shed_checksum (pull request #432) Implement Tool Shed checksums Affected #: 1 file diff -r 4411a021a9fad918cef26e00adf6f49e247fb0bd -r b86bab7dad7d744c57f6eebe9f5b390ad083a8f6 lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py --- a/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py +++ b/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py @@ -8,6 +8,7 @@ import time import urllib2 import zipfile +import hashlib from galaxy.util import asbool from galaxy.util.template import fill_template @@ -139,10 +140,29 @@ class Download( object ): def url_download( self, install_dir, downloaded_file_name, download_url, extract=True ): + """ + The given download_url can have an extension like #md5# or #sha256#. + This indicates a checksum which will be chekced after download. + If the checksum does not match an exception is thrown. + + https://pypi.python.org/packages/source/k/khmer/khmer-1.0.tar.gz#md5#b60639… + """ + file_path = os.path.join( install_dir, downloaded_file_name ) src = None dst = None + checksum = None + sha256 = False + md5 = False # Set a timer so we don't sit here forever. + + if '#md5#' in download_url: + md5 = True + download_url, checksum = download_url.split('#md5#') + elif '#sha256#' in download_url: + sha256 = True + download_url, checksum = download_url.split('#sha256#') + start_time = time.time() try: src = urllib2.urlopen( download_url ) @@ -166,6 +186,18 @@ src.close() if dst: dst.close() + + try: + if sha256: + downloaded_checksum = hashlib.sha256(open(file_path, 'rb').read()).hexdigest() + elif md5: + downloaded_checksum = hashlib.md5(open(file_path, 'rb').read()).hexdigest() + + if checksum and downloaded_checksum != checksum: + raise Exception( 'Given checksum does not match with the one from the downloaded file (%s).' % (downloaded_checksum) ) + except Exception, e: + raise + if extract: if tarfile.is_tarfile( file_path ) or ( zipfile.is_zipfile( file_path ) and not file_path.endswith( '.jar' ) ): archive = CompressedFile( file_path ) @@ -174,6 +206,7 @@ extraction_path = os.path.abspath( install_dir ) else: extraction_path = os.path.abspath( install_dir ) + return extraction_path @@ -1421,7 +1454,6 @@ if initial_download: filtered_actions = actions[ 1: ] env_shell_file_paths = action_dict.get( 'env_shell_file_paths', None ) - log.debug( '\n%s\n' % env_shell_file_paths ) if env_shell_file_paths is None: log.debug( 'Missing Python environment, make sure your specified Python installation exists.' ) if initial_download: Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: dannon: Merged in BjoernGruening/galaxy-central-bgruening/tool_shed_checksum (pull request #432)
by commits-noreply＠bitbucket.org 09 Jul '14

09 Jul '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/b86bab7dad7d/ Changeset: b86bab7dad7d User: dannon Date: 2014-07-09 17:39:45 Summary: Merged in BjoernGruening/galaxy-central-bgruening/tool_shed_checksum (pull request #432) Implement Tool Shed checksums Affected #: 1 file diff -r 4411a021a9fad918cef26e00adf6f49e247fb0bd -r b86bab7dad7d744c57f6eebe9f5b390ad083a8f6 lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py --- a/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py +++ b/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py @@ -8,6 +8,7 @@ import time import urllib2 import zipfile +import hashlib from galaxy.util import asbool from galaxy.util.template import fill_template @@ -139,10 +140,29 @@ class Download( object ): def url_download( self, install_dir, downloaded_file_name, download_url, extract=True ): + """ + The given download_url can have an extension like #md5# or #sha256#. + This indicates a checksum which will be chekced after download. + If the checksum does not match an exception is thrown. + + https://pypi.python.org/packages/source/k/khmer/khmer-1.0.tar.gz#md5#b60639… + """ + file_path = os.path.join( install_dir, downloaded_file_name ) src = None dst = None + checksum = None + sha256 = False + md5 = False # Set a timer so we don't sit here forever. + + if '#md5#' in download_url: + md5 = True + download_url, checksum = download_url.split('#md5#') + elif '#sha256#' in download_url: + sha256 = True + download_url, checksum = download_url.split('#sha256#') + start_time = time.time() try: src = urllib2.urlopen( download_url ) @@ -166,6 +186,18 @@ src.close() if dst: dst.close() + + try: + if sha256: + downloaded_checksum = hashlib.sha256(open(file_path, 'rb').read()).hexdigest() + elif md5: + downloaded_checksum = hashlib.md5(open(file_path, 'rb').read()).hexdigest() + + if checksum and downloaded_checksum != checksum: + raise Exception( 'Given checksum does not match with the one from the downloaded file (%s).' % (downloaded_checksum) ) + except Exception, e: + raise + if extract: if tarfile.is_tarfile( file_path ) or ( zipfile.is_zipfile( file_path ) and not file_path.endswith( '.jar' ) ): archive = CompressedFile( file_path ) @@ -174,6 +206,7 @@ extraction_path = os.path.abspath( install_dir ) else: extraction_path = os.path.abspath( install_dir ) + return extraction_path @@ -1421,7 +1454,6 @@ if initial_download: filtered_actions = actions[ 1: ] env_shell_file_paths = action_dict.get( 'env_shell_file_paths', None ) - log.debug( '\n%s\n' % env_shell_file_paths ) if env_shell_file_paths is None: log.debug( 'Missing Python environment, make sure your specified Python installation exists.' ) if initial_download: Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

Jump to page: