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commit/galaxy-central: richard_burhans: name change: _BX main_ browser -> _BX_ table browser
by Bitbucket 22 Aug '12

22 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/bf6517b2b336/ changeset: bf6517b2b336 user: richard_burhans date: 2012-08-22 21:31:23 summary: name change: _BX main_ browser -> _BX_ table browser affected #: 1 file diff -r 863e1150c85b7383a1b136c9b3c9376da81bc16b -r bf6517b2b336113964fe90ef74b6db333ee97f63 tools/data_source/bx_browser.xml --- a/tools/data_source/bx_browser.xml +++ b/tools/data_source/bx_browser.xml @@ -4,8 +4,8 @@ the initial response. If value of 'URL_method' is 'post', any additional params coming back in the initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed. --> -<tool name="BX main" id="bx_browser" tool_type="data_source"> - <description>browser</description> +<tool name="BX" id="bx_browser" tool_type="data_source"> + <description>table browser</description><command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command><inputs action="http://main.genome-browser.bx.psu.edu/cgi-bin/hgTables" check_values="false" method="get"><display>go to BX Browser $GALAXY_URL</display> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: jgoecks: Add data placeholders so that BED files without all optional fields can be dynamically filtered.
by Bitbucket 22 Aug '12

22 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/863e1150c85b/ changeset: 863e1150c85b user: jgoecks date: 2012-08-22 20:42:05 summary: Add data placeholders so that BED files without all optional fields can be dynamically filtered. affected #: 1 file diff -r 931382e567f501ff8529cdd3c7b45c2d08d0ab23 -r 863e1150c85b7383a1b136c9b3c9376da81bc16b lib/galaxy/visualization/tracks/data_providers.py --- a/lib/galaxy/visualization/tracks/data_providers.py +++ b/lib/galaxy/visualization/tracks/data_providers.py @@ -484,6 +484,11 @@ # Score (filter data) if length >= 5 and filter_cols and filter_cols[0] == "Score": + # If dataset doesn't have name/strand/thick start/thick end/blocks, + # add placeholders. There should be 8 entries if all attributes + # are present. + payload.extend( [ None for i in range( 8 - len( payload ) ) ] ) + try: payload.append( float( feature[4] ) ) except: Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: dan: Refactor GBrowse external display application. Update WormBase with latest builds and to be able to use reference sites.
by Bitbucket 22 Aug '12

22 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/931382e567f5/ changeset: 931382e567f5 user: dan date: 2012-08-22 18:35:23 summary: Refactor GBrowse external display application. Update WormBase with latest builds and to be able to use reference sites. affected #: 6 files diff -r 7eeee803345e111b9485cc9b9c2b397a6623fa5f -r 931382e567f501ff8529cdd3c7b45c2d08d0ab23 display_applications/gbrowse/gbrowse_gff.xml --- a/display_applications/gbrowse/gbrowse_gff.xml +++ b/display_applications/gbrowse/gbrowse_gff.xml @@ -1,16 +1,24 @@ <display id="gbrowse_gff" version="1.0.0" name="display at GBrowse"> - <dynamic_links from_file="tool-data/shared/gbrowse/gbrowse_build_sites.txt" skip_startswith="#" id="0" name="0"> + <dynamic_links from_file="tool-data/shared/gbrowse/gbrowse_build_sites.txt" skip_startswith="#" id="0" name="1"> + <dynamic_param name="site_id" value="0"/> - <dynamic_param name="gbrowse_link" value="1"/> - <dynamic_param name="builds" value="2" split="True" separator="," /> + <dynamic_param name="site_name" value="1"/> + <dynamic_param name="site_link" value="2"/> + <dynamic_param name="site_dbkeys" value="3" split="True" separator="," /> + <dynamic_param name="site_organisms" value="4" split="True" separator="," /> + <filter>${site_id in $APP.config.gbrowse_display_sites}</filter> - <filter>${dataset.dbkey in $builds}</filter> + <filter>${dataset.dbkey in $site_dbkeys}</filter> +  - <url>${gbrowse_link}/?${position}eurl=${gff_file.qp}</url> + <url>${site_link}${site_organism}/?${position}eurl=${gff_file.qp}</url><param type="data" name="gff_file" url="galaxy_${DATASET_HASH}.gff" /> + <param type="template" name="site_organism" strip="True" > + $site_organisms[ $site_dbkeys.index( $gff_file.dbkey ) ] + </param><param type="template" name="position" strip="True" > #set chrom, start, end = $gff_file.datatype.get_estimated_display_viewport( $gff_file ) #if $chrom is not None: diff -r 7eeee803345e111b9485cc9b9c2b397a6623fa5f -r 931382e567f501ff8529cdd3c7b45c2d08d0ab23 display_applications/gbrowse/gbrowse_interval_as_bed.xml --- a/display_applications/gbrowse/gbrowse_interval_as_bed.xml +++ b/display_applications/gbrowse/gbrowse_interval_as_bed.xml @@ -1,16 +1,24 @@ <display id="gbrowse_interval_as_bed" version="1.0.0" name="display at GBrowse"> - <dynamic_links from_file="tool-data/shared/gbrowse/gbrowse_build_sites.txt" skip_startswith="#" id="0" name="0"> + <dynamic_links from_file="tool-data/shared/gbrowse/gbrowse_build_sites.txt" skip_startswith="#" id="0" name="1"> + <dynamic_param name="site_id" value="0"/> - <dynamic_param name="gbrowse_link" value="1"/> - <dynamic_param name="builds" value="2" split="True" separator="," /> + <dynamic_param name="site_name" value="1"/> + <dynamic_param name="site_link" value="2"/> + <dynamic_param name="site_dbkeys" value="3" split="True" separator="," /> + <dynamic_param name="site_organisms" value="4" split="True" separator="," /> + <filter>${site_id in $APP.config.gbrowse_display_sites}</filter> - <filter>${dataset.dbkey in $builds}</filter> + <filter>${dataset.dbkey in $site_dbkeys}</filter> +  - <url>${gbrowse_link}/?${position}eurl=${bed_file.qp}</url> + <url>${site_link}${site_organism}/?${position}eurl=${bed_file.qp}</url><param type="data" name="bed_file" url="galaxy_${DATASET_HASH}.bed" format="bedstrict"/> + <param type="template" name="site_organism" strip="True" > + $site_organisms[ $site_dbkeys.index( $bed_file.dbkey ) ] + </param><param type="template" name="position" strip="True" > #set chrom, start, end = $bed_file.datatype.get_estimated_display_viewport( $bed_file ) #if $chrom is not None: diff -r 7eeee803345e111b9485cc9b9c2b397a6623fa5f -r 931382e567f501ff8529cdd3c7b45c2d08d0ab23 display_applications/gbrowse/gbrowse_wig.xml --- a/display_applications/gbrowse/gbrowse_wig.xml +++ b/display_applications/gbrowse/gbrowse_wig.xml @@ -1,16 +1,24 @@ <display id="gbrowse_wig" version="1.0.0" name="display at GBrowse"> - <dynamic_links from_file="tool-data/shared/gbrowse/gbrowse_build_sites.txt" skip_startswith="#" id="0" name="0"> + <dynamic_links from_file="tool-data/shared/gbrowse/gbrowse_build_sites.txt" skip_startswith="#" id="0" name="1"> + <dynamic_param name="site_id" value="0"/> - <dynamic_param name="gbrowse_link" value="1"/> - <dynamic_param name="builds" value="2" split="True" separator="," /> + <dynamic_param name="site_name" value="1"/> + <dynamic_param name="site_link" value="2"/> + <dynamic_param name="site_dbkeys" value="3" split="True" separator="," /> + <dynamic_param name="site_organisms" value="4" split="True" separator="," /> + <filter>${site_id in $APP.config.gbrowse_display_sites}</filter> - <filter>${dataset.dbkey in $builds}</filter> + <filter>${dataset.dbkey in $site_dbkeys}</filter> +  - <url>${gbrowse_link}/?${position}eurl=${wig_file.qp}</url> + <url>${site_link}${site_organism}/?${position}eurl=${wig_file.qp}</url><param type="data" name="wig_file" url="galaxy_${DATASET_HASH}.wig" format="wig"/> + <param type="template" name="site_organism" strip="True" > + $site_organisms[ $site_dbkeys.index( $wig_file.dbkey ) ] + </param><param type="template" name="position" strip="True" > #set chrom, start, end = $wig_file.datatype.get_estimated_display_viewport( $wig_file ) #if $chrom is not None: diff -r 7eeee803345e111b9485cc9b9c2b397a6623fa5f -r 931382e567f501ff8529cdd3c7b45c2d08d0ab23 lib/galaxy/config.py --- a/lib/galaxy/config.py +++ b/lib/galaxy/config.py @@ -132,7 +132,7 @@ self.log_events = string_as_bool( kwargs.get( 'log_events', 'False' ) ) self.sanitize_all_html = string_as_bool( kwargs.get( 'sanitize_all_html', True ) ) self.ucsc_display_sites = kwargs.get( 'ucsc_display_sites', "main,test,archaea,ucla" ).lower().split(",") - self.gbrowse_display_sites = kwargs.get( 'gbrowse_display_sites', "wormbase,tair,modencode_worm,modencode_fly,sgd_yeast" ).lower().split(",") + self.gbrowse_display_sites = kwargs.get( 'gbrowse_display_sites', "modencode,sgd_yeast,tair,wormbase,wormbase_ws120,wormbase_ws140,wormbase_ws170,wormbase_ws180,wormbase_ws190,wormbase_ws200,wormbase_ws204,wormbase_ws210,wormbase_ws220,wormbase_ws225" ).lower().split(",") self.genetrack_display_sites = kwargs.get( 'genetrack_display_sites', "main,test" ).lower().split(",") self.brand = kwargs.get( 'brand', None ) self.support_url = kwargs.get( 'support_url', 'http://wiki.g2.bx.psu.edu/Support' ) diff -r 7eeee803345e111b9485cc9b9c2b397a6623fa5f -r 931382e567f501ff8529cdd3c7b45c2d08d0ab23 tool-data/shared/gbrowse/gbrowse_build_sites.txt --- a/tool-data/shared/gbrowse/gbrowse_build_sites.txt +++ b/tool-data/shared/gbrowse/gbrowse_build_sites.txt @@ -1,14 +1,24 @@ -# wormbase sites / supported genomes -wormbase http://www.wormbase.org/db/gb2/gbrowse/c_elegans ce8,ce7,ce6,ce5,ce4,ce3,ce2,cb3,cb2,cb1,caeRem3,caeRem2,caeRem1,caePb2,caePb1,caeJap2,caeJap1 -#test http://dev.wormbase.org/db/seq/gbrowse/c_elegans/ ce8,ce7,ce6,ce5,ce4,ce3,ce2,cb3,cb2,cb1,caeRem3,caeRem2,caeRem1,caePb2,caePb1,caeJap2,caeJap1 +#GBrowse Sites +#site_id site_name site_link site_dbkeys site_organisms -# UCSC mirror that includes arabidopsis -tair http://arabidopsis.org/cgi-bin/gbrowse/ arabidopsis_tair8,arabidopsis +#WormBase +wormbase WormBase current http://www.wormbase.org/db/gb2/gbrowse/ ce10,ce9,ce8,ce7,ce6,ce5,ce4,ce3,ce2,cb4,cb3,cb2,cb1,caeRem4,caeRem3,caeRem2,caeRem1,caePb2,caePb1,caeJap4,caeJap3,caeJap2,caeJap1,caeAng1 c_elegans,c_elegans,c_elegans,c_elegans,c_elegans,c_elegans,c_elegans,c_elegans,c_elegans,c_briggsae,c_briggsae,c_briggsae,c_briggsae,c_remanei,c_remanei,c_remanei,c_remanei,c_brenneri,c_brenneri,c_japonica,c_japonica,c_japonica,c_japonica,c_angaria +wormbase_ws120 WormBase WS120 http://ws120.wormbase.org/db/seq/gbrowse/ ce2 wormbase +wormbase_ws140 WormBase WS140 http://ws140.wormbase.org/db/seq/gbrowse/ ce3 wormbase +wormbase_ws170 WormBase WS170 http://ws170.wormbase.org/db/seq/gbrowse/ ce4 wormbase +wormbase_ws180 WormBase WS180 http://ws180.wormbase.org/db/seq/gbrowse/ ce5 elegans +wormbase_ws190 WormBase WS190 http://ws190.wormbase.org/db/seq/gbrowse/ ce6 elegans +wormbase_ws200 WormBase WS200 http://ws200.wormbase.org/db/seq/gbrowse/ ce7 c_elegans +wormbase_ws204 WormBase WS204 http://ws204.wormbase.org/db/seq/gbrowse/ ce8 c_elegans +wormbase_ws210 WormBase WS210 http://ws210.wormbase.org/db/seq/gbrowse/ ce9 c_elegans +wormbase_ws220 WormBase WS220 http://ws220.wormbase.org/db/gb2/gbrowse/ ce10,caeRem4 c_elegans,c_remanei +wormbase_ws225 WormBase WS225 http://ws225.wormbase.org/db/gb2/gbrowse/ caeAng1,cb4 c_angaria,c_briggsae -# modENCODE worm and fly -modencode_worm http://modencode.oicr.on.ca/fgb2/gbrowse/worm ce6 -modencode_fly http://modencode.oicr.on.ca/fgb2/gbrowse/fly dm2 +#The Arabidopsis Information Resource (tair) +tair tair http://arabidopsis.org/cgi-bin/gbrowse/ arabidopsis_tair8,arabidopsis,Arabidopsis_thaliana_TAIR10 arabidopsis_tair8,arabidopsis_tair9,arabidopsis -#SGD -sgd_yeast http://browse.yeastgenome.org/fgb2/gbrowse/scgenome Saccharomyces_cerevisiae_S288C_SGD2010 +#modENCODE +modencode modENCODE http://modencode.oicr.on.ca/fgb2/gbrowse/ ce6,dm2 worm,fly +#Saccharomyces Genome Database (SGD) +sgd_yeast Saccharomyces Genome Database http://browse.yeastgenome.org/fgb2/gbrowse/ Saccharomyces_cerevisiae_S288C_SGD2010 scgenome diff -r 7eeee803345e111b9485cc9b9c2b397a6623fa5f -r 931382e567f501ff8529cdd3c7b45c2d08d0ab23 universe_wsgi.ini.sample --- a/universe_wsgi.ini.sample +++ b/universe_wsgi.ini.sample @@ -218,7 +218,7 @@ #ucsc_display_sites = main,test,archaea,ucla # GBrowse servers: tool-data/shared/gbrowse/gbrowse_build_sites.txt -#gbrowse_display_sites = wormbase,tair,modencode_worm,modencode_fly,yeast_sgd +#gbrowse_display_sites = modencode,sgd_yeast,tair,wormbase,wormbase_ws120,wormbase_ws140,wormbase_ws170,wormbase_ws180,wormbase_ws190,wormbase_ws200,wormbase_ws204,wormbase_ws210,wormbase_ws220,wormbase_ws225 # GeneTrack servers: tool-data/shared/genetrack/genetrack_sites.txt #genetrack_display_sites = main,test Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. 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commit/galaxy-central: dan: Better handling of invalid dynamic external display application links.
by Bitbucket 22 Aug '12

22 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/7eeee803345e/ changeset: 7eeee803345e user: dan date: 2012-08-22 17:40:55 summary: Better handling of invalid dynamic external display application links. affected #: 1 file diff -r 9df126526d89979a7830bc48c7bff122555eaea9 -r 7eeee803345e111b9485cc9b9c2b397a6623fa5f lib/galaxy/datatypes/display_applications/application.py --- a/lib/galaxy/datatypes/display_applications/application.py +++ b/lib/galaxy/datatypes/display_applications/application.py @@ -98,8 +98,10 @@ for line in open( filename ): if not skip_startswith or not line.startswith( skip_startswith ): line = line.rstrip( '\n\r' ) + if not line: + continue fields = line.split( separator ) - if len( fields ) >= max_col: + if len( fields ) > max_col: new_elem = deepcopy( elem ) new_elem.set( 'id', fields[id_col] ) new_elem.set( 'name', fields[name_col] ) @@ -111,6 +113,8 @@ dynamic_values[key] = value #now populate rval.append( DisplayApplicationLink.from_elem( new_elem, display_application, other_values = dynamic_values ) ) + else: + log.warning( 'Invalid dynamic display application link specified in %s: "%s"' % ( filename, line ) ) self.links = rval def __iter__( self ): return iter( self.links ) Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: afgane: Rename an ObjectStore method not to be AWS-specific
by Bitbucket 22 Aug '12

22 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/9df126526d89/ changeset: 9df126526d89 user: afgane date: 2012-08-22 08:24:52 summary: Rename an ObjectStore method not to be AWS-specific affected #: 1 file diff -r 8c07fc133839d1c175aa85d37d43f2f9ce5c6182 -r 9df126526d89979a7830bc48c7bff122555eaea9 lib/galaxy/objectstore/__init__.py --- a/lib/galaxy/objectstore/__init__.py +++ b/lib/galaxy/objectstore/__init__.py @@ -608,13 +608,13 @@ log.error("Problem downloading key '%s' from S3 bucket '%s': %s" % (rel_path, self.bucket.name, ex)) return False - def _push_to_s3(self, rel_path, source_file=None, from_string=None): + def _push_to_os(self, rel_path, source_file=None, from_string=None): """ - Push the file pointed to by `rel_path` to S3 naming the key `rel_path`. - If `source_file` is provided, push that file instead while still using - `rel_path` as the key name. - If `from_string` is provided, set contents of the file to the value of - the string + Push the file pointed to by ``rel_path`` to the object store naming the key + ``rel_path``. If ``source_file`` is provided, push that file instead while + still using ``rel_path`` as the key name. + If ``from_string`` is provided, set contents of the file to the value of + the string. """ try: source_file = source_file if source_file else self._get_cache_path(rel_path) @@ -680,7 +680,7 @@ return False # TODO: Sync should probably not be done here. Add this to an async upload stack? if in_cache and not in_s3: - self._push_to_s3(rel_path, source_file=self._get_cache_path(rel_path)) + self._push_to_os(rel_path, source_file=self._get_cache_path(rel_path)) return True elif in_s3: return True @@ -713,12 +713,12 @@ # flat namespace), do so for consistency with the regular file system # S3 folders are marked by having trailing '/' so add it now # s3_dir = '%s/' % rel_path - # self._push_to_s3(s3_dir, from_string='') + # self._push_to_os(s3_dir, from_string='') # If instructed, create the dataset in cache & in S3 if not dir_only: rel_path = os.path.join(rel_path, alt_name if alt_name else "dataset_%s.dat" % obj.id) open(os.path.join(self.staging_path, rel_path), 'w').close() - self._push_to_s3(rel_path, from_string='') + self._push_to_os(rel_path, from_string='') def empty(self, obj, **kwargs): if self.exists(obj, **kwargs): @@ -832,7 +832,7 @@ else: source_file = self._get_cache_path(rel_path) # Update the file on S3 - self._push_to_s3(rel_path, source_file) + self._push_to_os(rel_path, source_file) else: raise ObjectNotFound() Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: 2 new changesets
by Bitbucket 22 Aug '12

22 Aug '12

2 new commits in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/f906603c475e/ changeset: f906603c475e user: afgane date: 2012-08-22 08:12:46 summary: Multipart upload to OpenStack Swift does not work with boto so don't use it affected #: 2 files diff -r 9e9e104ad5c93a2268bb00cfae09b57a31ece13c -r f906603c475e80f9d3171c18a4051c4b325b6e5b lib/galaxy/objectstore/__init__.py --- a/lib/galaxy/objectstore/__init__.py +++ b/lib/galaxy/objectstore/__init__.py @@ -631,7 +631,7 @@ # print "Pushing cache file '%s' of size %s bytes to key '%s'" % (source_file, os.path.getsize(source_file), rel_path) # print "+ Push started at '%s'" % start_time mb_size = os.path.getsize(source_file) / 1e6 - if mb_size < 60: + if mb_size < 60 or self.config.object_store == 'swift': self.transfer_progress = 0 # Reset transfer progress counter key.set_contents_from_filename(source_file, reduced_redundancy=self.use_rr, cb=self._transfer_cb, num_cb=10) @@ -649,12 +649,17 @@ return False def file_ready(self, obj, **kwargs): - """ A helper method that checks if a file corresponding to a dataset - is ready and available to be used. Return True if so, False otherwise.""" + """ + A helper method that checks if a file corresponding to a dataset is + ready and available to be used. Return ``True`` if so, ``False`` otherwise. + """ rel_path = self._construct_path(obj, **kwargs) # Make sure the size in cache is available in its entirety - if self._in_cache(rel_path) and os.path.getsize(self._get_cache_path(rel_path)) == self._get_size_in_s3(rel_path): - return True + if self._in_cache(rel_path): + if os.path.getsize(self._get_cache_path(rel_path)) == self._get_size_in_s3(rel_path): + return True + log.debug("Waiting for dataset {0} to transfer from OS: {1}/{2}".format(rel_path, + os.path.getsize(self._get_cache_path(rel_path)), self._get_size_in_s3(rel_path))) return False def exists(self, obj, **kwargs): diff -r 9e9e104ad5c93a2268bb00cfae09b57a31ece13c -r f906603c475e80f9d3171c18a4051c4b325b6e5b templates/root/history.mako --- a/templates/root/history.mako +++ b/templates/root/history.mako @@ -166,7 +166,7 @@ // $("<div/>").text("Data is loading from S3... please be patient").appendTo(link.parent()); $( '#historyItem-' + history_id).removeClass( "historyItem-ok" ); $( '#historyItem-' + history_id).addClass( "historyItem-running" ); - setTimeout(function(){check_transfer_status(link, history_id)}, 1000); + setTimeout(function(){check_transfer_status(link, history_id)}, 4000); } else { $( '#historyItem-' + history_id).removeClass( "historyItem-running" ); $( '#historyItem-' + history_id).addClass( "historyItem-ok" ); https://bitbucket.org/galaxy/galaxy-central/changeset/8c07fc133839/ changeset: 8c07fc133839 user: afgane date: 2012-08-22 08:13:51 summary: Merge affected #: 194 files Diff too large to display. Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: jgoecks: Final JS reorg to rename and move files so that all files follow standard conventions.
by Bitbucket 21 Aug '12

21 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/e27c236c05e5/ changeset: e27c236c05e5 user: jgoecks date: 2012-08-21 23:08:35 summary: Final JS reorg to rename and move files so that all files follow standard conventions. affected #: 29 files diff -r f076e439d46e1bd66a9a5dd0c75c69c0a11550ed -r e27c236c05e5d65f3ce92f271a712419e7fd73a5 static/scripts/autocomplete_tagging.js --- a/static/scripts/autocomplete_tagging.js +++ /dev/null @@ -1,374 +0,0 @@ -/** -* JQuery extension for tagging with autocomplete. -* @author: Jeremy Goecks -* @require: jquery.autocomplete plugin -*/ -// -// Initialize "tag click functions" for tags. -// -function init_tag_click_function(tag_elt, click_func) { - $(tag_elt).find('.tag-name').each( function() { - $(this).click( function() { - var tag_str = $(this).text(); - var tag_name_and_value = tag_str.split(":"); - click_func(tag_name_and_value[0], tag_name_and_value[1]); - return true; - }); - }); -} - -jQuery.fn.autocomplete_tagging = function(options) { - - var defaults = { - get_toggle_link_text_fn: function(tags) { - var text = ""; - var num_tags = obj_length(tags); - if (num_tags > 0) { - text = num_tags + (num_tags > 1 ? " Tags" : " Tag"); - } else { - text = "Add tags"; - } - return text; - }, - tag_click_fn : function (name, value) {}, - editable: true, - input_size: 20, - in_form: false, - tags : {}, - use_toggle_link: true, - item_id: "", - add_tag_img: "", - add_tag_img_rollover: "", - delete_tag_img: "", - ajax_autocomplete_tag_url: "", - ajax_retag_url: "", - ajax_delete_tag_url: "", - ajax_add_tag_url: "" - }; - - var settings = jQuery.extend(defaults, options); - - // - // Initalize object's elements. - // - - // Get elements for this object. For this_obj, assume the last element with the id is the "this"; this is somewhat of a hack to address the problem - // that there may be two tagging elements for a single item if there are both community and individual tags for an element. - var this_obj = $(this); - var tag_area = this_obj.find('.tag-area'); - var toggle_link = this_obj.find('.toggle-link'); - var tag_input_field = this_obj.find('.tag-input'); - var add_tag_button = this_obj.find('.add-tag-button'); - - // Initialize toggle link. - toggle_link.click( function() { - // Take special actions depending on whether toggle is showing or hiding link. - var after_toggle_fn; - if (tag_area.is(":hidden")) { - after_toggle_fn = function() { - // If there are no tags, go right to editing mode by generating a click on the area. - var num_tags = $(this).find('.tag-button').length; - if (num_tags === 0) { - tag_area.click(); - } - }; - } else { - after_toggle_fn = function() { - tag_area.blur(); - }; - } - tag_area.slideToggle("fast", after_toggle_fn); - return $(this); - }); - - // Initialize tag input field. - if (settings.editable) { - tag_input_field.hide(); - } - tag_input_field.keyup( function(e) { - if ( e.keyCode === 27 ) { - // Escape key - $(this).trigger( "blur" ); - } else if ( - ( e.keyCode === 13 ) || // Return Key - ( e.keyCode === 188 ) || // Comma - ( e.keyCode === 32 ) // Space - ) { - // - // Check input. - // - - var new_value = this.value; - - // Do nothing if return key was used to autocomplete. - if (return_key_pressed_for_autocomplete === true) { - return_key_pressed_for_autocomplete = false; - return false; - } - - // Suppress space after a ":" - if ( new_value.indexOf(": ", new_value.length - 2) !== -1) { - this.value = new_value.substring(0, new_value.length-1); - return false; - } - - // Remove trigger keys from input. - if ( (e.keyCode === 188) || (e.keyCode === 32) ) { - new_value = new_value.substring( 0 , new_value.length - 1 ); - } - - // Trim whitespace. - new_value = $.trim(new_value); - - // Too short? - if (new_value.length < 2) { - return false; - } - - // - // New tag OK - apply it. - // - - this.value = ""; // Reset text field now that tag is being added - - // Add button for tag after all other tag buttons. - var new_tag_button = build_tag_button(new_value); - var tag_buttons = tag_area.children(".tag-button"); - if (tag_buttons.length !== 0) { - var last_tag_button = tag_buttons.slice(tag_buttons.length-1); - last_tag_button.after(new_tag_button); - } else { - tag_area.prepend(new_tag_button); - } - - // Add tag to internal list. - var tag_name_and_value = new_value.split(":"); - settings.tags[tag_name_and_value[0]] = tag_name_and_value[1]; - - // Update toggle link text. - var new_text = settings.get_toggle_link_text_fn(settings.tags); - toggle_link.text(new_text); - - // Commit tag to server. - var zz = $(this); - $.ajax({ - url: settings.ajax_add_tag_url, - data: { new_tag: new_value }, - error: function() { - // Failed. Roll back changes and show alert. - new_tag_button.remove(); - delete settings.tags[tag_name_and_value[0]]; - var new_text = settings.get_toggle_link_text_fn(settings.tags); - toggle_link.text(new_text); - alert( "Add tag failed" ); - }, - success: function() { - // Flush autocomplete cache because it's not out of date. - // TODO: in the future, we could remove the particular item - // that was chosen from the cache rather than flush it. - zz.flushCache(); - } - }); - - return false; - } - }); - - // Add autocomplete to input. - var format_item_func = function(key, row_position, num_rows, value, search_term) { - var tag_name_and_value = value.split(":"); - return (tag_name_and_value.length === 1 ? tag_name_and_value[0] : tag_name_and_value[1]); - }; - var autocomplete_options = { selectFirst: false, formatItem: format_item_func, - autoFill: false, highlight: false }; - tag_input_field.autocomplete(settings.ajax_autocomplete_tag_url, autocomplete_options); - - - // Initialize delete tag images for current tags. - this_obj.find('.delete-tag-img').each(function() { - init_delete_tag_image( $(this) ); - }); - - - // Initialize tag click function. - init_tag_click_function($(this), settings.tag_click_fn); - - // Initialize "add tag" button. - add_tag_button.click( function() { - $(this).hide(); - - // Clicking on button is the same as clicking on the tag area. - tag_area.click(); - return false; - }); - - // - // Set up tag area interactions; these are needed only if tags are editable. - // - if (settings.editable) { - // When the tag area blurs, go to "view tag" mode. - tag_area.bind("blur", function(e) { - if (obj_length(settings.tags) > 0) { - add_tag_button.show(); - tag_input_field.hide(); - tag_area.removeClass("active-tag-area"); - tag_area.addClass("tooltip"); - } else { - // No tags, so do nothing to ensure that input is still visible. - } - }); - - // On click, enable user to add tags. - tag_area.click( function(e) { - var is_active = $(this).hasClass("active-tag-area"); - - // If a "delete image" object was pressed and area is inactive, do nothing. - if ($(e.target).hasClass("delete-tag-img") && !is_active) { - return false; - } - - // If a "tag name" object was pressed and area is inactive, do nothing. - if ($(e.target).hasClass("tag-name") && !is_active) { - return false; - } - - // Remove tooltip. - $(this).removeClass("tooltip"); - - // Hide add tag button, show tag_input field. Change background to show - // area is active. - $(this).addClass("active-tag-area"); - add_tag_button.hide(); - tag_input_field.show(); - tag_input_field.focus(); - - // Add handler to document that will call blur when the tag area is blurred; - // a tag area is blurred when a user clicks on an element outside the area. - var handle_document_click = function(e) { - var check_click = function(tag_area, target) { - var tag_area_id = tag_area.attr("id"); - // Blur the tag area if the element clicked on is not in the tag area. - if (target !== tag_area) { - tag_area.blur(); - $(window).unbind("click.tagging_blur"); - $(this).addClass("tooltip"); - } - }; - check_click(tag_area, $(e.target)); - }; - // TODO: we should attach the click handler to all frames in order to capture - // clicks outside the frame that this element is in. - //window.parent.document.onclick = handle_document_click; - //var temp = $(window.parent.document.body).contents().find("iframe").html(); - //alert(temp); - //$(document).parent().click(handle_document_click); - $(window).bind("click.tagging_blur", handle_document_click); - - return false; - }); - } - - // If using toggle link, hide the tag area. Otherwise, show the tag area. - if (settings.use_toggle_link) { - tag_area.hide(); - } - - // - // Helper functions. - // - - // - // Collapse tag name + value into a single string. - // - function build_tag_str(tag_name, tag_value) { - return tag_name + ( tag_value ? ":" + tag_value : ""); - } - - - // Initialize a "delete tag image": when click, delete tag from UI and send delete request to server. - function init_delete_tag_image(delete_img) { - $(delete_img).mouseenter( function () { - $(this).attr("src", settings.delete_tag_img_rollover); - }); - $(delete_img).mouseleave( function () { - $(this).attr("src", settings.delete_tag_img); - }); - $(delete_img).click( function () { - // Tag button is image's parent. - var tag_button = $(this).parent(); - - // Get tag name, value. - var tag_name_elt = tag_button.find(".tag-name").eq(0); - var tag_str = tag_name_elt.text(); - var tag_name_and_value = tag_str.split(":"); - var tag_name = tag_name_and_value[0]; - var tag_value = tag_name_and_value[1]; - - var prev_button = tag_button.prev(); - tag_button.remove(); - - // Remove tag from local list for consistency. - delete settings.tags[tag_name]; - - // Update toggle link text. - var new_text = settings.get_toggle_link_text_fn(settings.tags); - toggle_link.text(new_text); - - // Delete tag. - $.ajax({ - url: settings.ajax_delete_tag_url, - data: { tag_name: tag_name }, - error: function() { - // Failed. Roll back changes and show alert. - settings.tags[tag_name] = tag_value; - if (prev_button.hasClass("tag-button")) { - prev_button.after(tag_button); - } else { - tag_area.prepend(tag_button); - } - alert( "Remove tag failed" ); - - toggle_link.text(settings.get_toggle_link_text_fn(settings.tags)); - - // TODO: no idea why it's necessary to set this up again. - delete_img.mouseenter( function () { - $(this).attr("src", settings.delete_tag_img_rollover); - }); - delete_img.mouseleave( function () { - $(this).attr("src", settings.delete_tag_img); - }); - }, - success: function() {} - }); - - return true; - }); - } - - // - // Function that builds a tag button. - // - function build_tag_button(tag_str) { - // Build "delete tag" image. - var delete_img = $("<img/>").attr("src", settings.delete_tag_img).addClass("delete-tag-img"); - init_delete_tag_image(delete_img); - - // Build tag button. - var tag_name_elt = $("<span>").text(tag_str).addClass("tag-name"); - tag_name_elt.click( function() { - var tag_name_and_value = tag_str.split(":"); - settings.tag_click_fn(tag_name_and_value[0], tag_name_and_value[1]); - return true; - }); - - var tag_button = $("<span></span>").addClass("tag-button"); - tag_button.append(tag_name_elt); - // Allow delete only if element is editable. - if (settings.editable) { - tag_button.append(delete_img); - } - - return tag_button; - } - -}; diff -r f076e439d46e1bd66a9a5dd0c75c69c0a11550ed -r e27c236c05e5d65f3ce92f271a712419e7fd73a5 static/scripts/galaxy.autocom_tagging.js --- /dev/null +++ b/static/scripts/galaxy.autocom_tagging.js @@ -0,0 +1,374 @@ +/** +* JQuery extension for tagging with autocomplete. +* @author: Jeremy Goecks +* @require: jquery.autocomplete plugin +*/ +// +// Initialize "tag click functions" for tags. +// +function init_tag_click_function(tag_elt, click_func) { + $(tag_elt).find('.tag-name').each( function() { + $(this).click( function() { + var tag_str = $(this).text(); + var tag_name_and_value = tag_str.split(":"); + click_func(tag_name_and_value[0], tag_name_and_value[1]); + return true; + }); + }); +} + +jQuery.fn.autocomplete_tagging = function(options) { + + var defaults = { + get_toggle_link_text_fn: function(tags) { + var text = ""; + var num_tags = obj_length(tags); + if (num_tags > 0) { + text = num_tags + (num_tags > 1 ? " Tags" : " Tag"); + } else { + text = "Add tags"; + } + return text; + }, + tag_click_fn : function (name, value) {}, + editable: true, + input_size: 20, + in_form: false, + tags : {}, + use_toggle_link: true, + item_id: "", + add_tag_img: "", + add_tag_img_rollover: "", + delete_tag_img: "", + ajax_autocomplete_tag_url: "", + ajax_retag_url: "", + ajax_delete_tag_url: "", + ajax_add_tag_url: "" + }; + + var settings = jQuery.extend(defaults, options); + + // + // Initalize object's elements. + // + + // Get elements for this object. For this_obj, assume the last element with the id is the "this"; this is somewhat of a hack to address the problem + // that there may be two tagging elements for a single item if there are both community and individual tags for an element. + var this_obj = $(this); + var tag_area = this_obj.find('.tag-area'); + var toggle_link = this_obj.find('.toggle-link'); + var tag_input_field = this_obj.find('.tag-input'); + var add_tag_button = this_obj.find('.add-tag-button'); + + // Initialize toggle link. + toggle_link.click( function() { + // Take special actions depending on whether toggle is showing or hiding link. + var after_toggle_fn; + if (tag_area.is(":hidden")) { + after_toggle_fn = function() { + // If there are no tags, go right to editing mode by generating a click on the area. + var num_tags = $(this).find('.tag-button').length; + if (num_tags === 0) { + tag_area.click(); + } + }; + } else { + after_toggle_fn = function() { + tag_area.blur(); + }; + } + tag_area.slideToggle("fast", after_toggle_fn); + return $(this); + }); + + // Initialize tag input field. + if (settings.editable) { + tag_input_field.hide(); + } + tag_input_field.keyup( function(e) { + if ( e.keyCode === 27 ) { + // Escape key + $(this).trigger( "blur" ); + } else if ( + ( e.keyCode === 13 ) || // Return Key + ( e.keyCode === 188 ) || // Comma + ( e.keyCode === 32 ) // Space + ) { + // + // Check input. + // + + var new_value = this.value; + + // Do nothing if return key was used to autocomplete. + if (return_key_pressed_for_autocomplete === true) { + return_key_pressed_for_autocomplete = false; + return false; + } + + // Suppress space after a ":" + if ( new_value.indexOf(": ", new_value.length - 2) !== -1) { + this.value = new_value.substring(0, new_value.length-1); + return false; + } + + // Remove trigger keys from input. + if ( (e.keyCode === 188) || (e.keyCode === 32) ) { + new_value = new_value.substring( 0 , new_value.length - 1 ); + } + + // Trim whitespace. + new_value = $.trim(new_value); + + // Too short? + if (new_value.length < 2) { + return false; + } + + // + // New tag OK - apply it. + // + + this.value = ""; // Reset text field now that tag is being added + + // Add button for tag after all other tag buttons. + var new_tag_button = build_tag_button(new_value); + var tag_buttons = tag_area.children(".tag-button"); + if (tag_buttons.length !== 0) { + var last_tag_button = tag_buttons.slice(tag_buttons.length-1); + last_tag_button.after(new_tag_button); + } else { + tag_area.prepend(new_tag_button); + } + + // Add tag to internal list. + var tag_name_and_value = new_value.split(":"); + settings.tags[tag_name_and_value[0]] = tag_name_and_value[1]; + + // Update toggle link text. + var new_text = settings.get_toggle_link_text_fn(settings.tags); + toggle_link.text(new_text); + + // Commit tag to server. + var zz = $(this); + $.ajax({ + url: settings.ajax_add_tag_url, + data: { new_tag: new_value }, + error: function() { + // Failed. Roll back changes and show alert. + new_tag_button.remove(); + delete settings.tags[tag_name_and_value[0]]; + var new_text = settings.get_toggle_link_text_fn(settings.tags); + toggle_link.text(new_text); + alert( "Add tag failed" ); + }, + success: function() { + // Flush autocomplete cache because it's not out of date. + // TODO: in the future, we could remove the particular item + // that was chosen from the cache rather than flush it. + zz.flushCache(); + } + }); + + return false; + } + }); + + // Add autocomplete to input. + var format_item_func = function(key, row_position, num_rows, value, search_term) { + var tag_name_and_value = value.split(":"); + return (tag_name_and_value.length === 1 ? tag_name_and_value[0] : tag_name_and_value[1]); + }; + var autocomplete_options = { selectFirst: false, formatItem: format_item_func, + autoFill: false, highlight: false }; + tag_input_field.autocomplete(settings.ajax_autocomplete_tag_url, autocomplete_options); + + + // Initialize delete tag images for current tags. + this_obj.find('.delete-tag-img').each(function() { + init_delete_tag_image( $(this) ); + }); + + + // Initialize tag click function. + init_tag_click_function($(this), settings.tag_click_fn); + + // Initialize "add tag" button. + add_tag_button.click( function() { + $(this).hide(); + + // Clicking on button is the same as clicking on the tag area. + tag_area.click(); + return false; + }); + + // + // Set up tag area interactions; these are needed only if tags are editable. + // + if (settings.editable) { + // When the tag area blurs, go to "view tag" mode. + tag_area.bind("blur", function(e) { + if (obj_length(settings.tags) > 0) { + add_tag_button.show(); + tag_input_field.hide(); + tag_area.removeClass("active-tag-area"); + tag_area.addClass("tooltip"); + } else { + // No tags, so do nothing to ensure that input is still visible. + } + }); + + // On click, enable user to add tags. + tag_area.click( function(e) { + var is_active = $(this).hasClass("active-tag-area"); + + // If a "delete image" object was pressed and area is inactive, do nothing. + if ($(e.target).hasClass("delete-tag-img") && !is_active) { + return false; + } + + // If a "tag name" object was pressed and area is inactive, do nothing. + if ($(e.target).hasClass("tag-name") && !is_active) { + return false; + } + + // Remove tooltip. + $(this).removeClass("tooltip"); + + // Hide add tag button, show tag_input field. Change background to show + // area is active. + $(this).addClass("active-tag-area"); + add_tag_button.hide(); + tag_input_field.show(); + tag_input_field.focus(); + + // Add handler to document that will call blur when the tag area is blurred; + // a tag area is blurred when a user clicks on an element outside the area. + var handle_document_click = function(e) { + var check_click = function(tag_area, target) { + var tag_area_id = tag_area.attr("id"); + // Blur the tag area if the element clicked on is not in the tag area. + if (target !== tag_area) { + tag_area.blur(); + $(window).unbind("click.tagging_blur"); + $(this).addClass("tooltip"); + } + }; + check_click(tag_area, $(e.target)); + }; + // TODO: we should attach the click handler to all frames in order to capture + // clicks outside the frame that this element is in. + //window.parent.document.onclick = handle_document_click; + //var temp = $(window.parent.document.body).contents().find("iframe").html(); + //alert(temp); + //$(document).parent().click(handle_document_click); + $(window).bind("click.tagging_blur", handle_document_click); + + return false; + }); + } + + // If using toggle link, hide the tag area. Otherwise, show the tag area. + if (settings.use_toggle_link) { + tag_area.hide(); + } + + // + // Helper functions. + // + + // + // Collapse tag name + value into a single string. + // + function build_tag_str(tag_name, tag_value) { + return tag_name + ( tag_value ? ":" + tag_value : ""); + } + + + // Initialize a "delete tag image": when click, delete tag from UI and send delete request to server. + function init_delete_tag_image(delete_img) { + $(delete_img).mouseenter( function () { + $(this).attr("src", settings.delete_tag_img_rollover); + }); + $(delete_img).mouseleave( function () { + $(this).attr("src", settings.delete_tag_img); + }); + $(delete_img).click( function () { + // Tag button is image's parent. + var tag_button = $(this).parent(); + + // Get tag name, value. + var tag_name_elt = tag_button.find(".tag-name").eq(0); + var tag_str = tag_name_elt.text(); + var tag_name_and_value = tag_str.split(":"); + var tag_name = tag_name_and_value[0]; + var tag_value = tag_name_and_value[1]; + + var prev_button = tag_button.prev(); + tag_button.remove(); + + // Remove tag from local list for consistency. + delete settings.tags[tag_name]; + + // Update toggle link text. + var new_text = settings.get_toggle_link_text_fn(settings.tags); + toggle_link.text(new_text); + + // Delete tag. + $.ajax({ + url: settings.ajax_delete_tag_url, + data: { tag_name: tag_name }, + error: function() { + // Failed. Roll back changes and show alert. + settings.tags[tag_name] = tag_value; + if (prev_button.hasClass("tag-button")) { + prev_button.after(tag_button); + } else { + tag_area.prepend(tag_button); + } + alert( "Remove tag failed" ); + + toggle_link.text(settings.get_toggle_link_text_fn(settings.tags)); + + // TODO: no idea why it's necessary to set this up again. + delete_img.mouseenter( function () { + $(this).attr("src", settings.delete_tag_img_rollover); + }); + delete_img.mouseleave( function () { + $(this).attr("src", settings.delete_tag_img); + }); + }, + success: function() {} + }); + + return true; + }); + } + + // + // Function that builds a tag button. + // + function build_tag_button(tag_str) { + // Build "delete tag" image. + var delete_img = $("<img/>").attr("src", settings.delete_tag_img).addClass("delete-tag-img"); + init_delete_tag_image(delete_img); + + // Build tag button. + var tag_name_elt = $("<span>").text(tag_str).addClass("tag-name"); + tag_name_elt.click( function() { + var tag_name_and_value = tag_str.split(":"); + settings.tag_click_fn(tag_name_and_value[0], tag_name_and_value[1]); + return true; + }); + + var tag_button = $("<span></span>").addClass("tag-button"); + tag_button.append(tag_name_elt); + // Allow delete only if element is editable. + if (settings.editable) { + tag_button.append(delete_img); + } + + return tag_button; + } + +}; diff -r f076e439d46e1bd66a9a5dd0c75c69c0a11550ed -r e27c236c05e5d65f3ce92f271a712419e7fd73a5 static/scripts/libs/jquery/jquery.ui.core.js --- /dev/null +++ b/static/scripts/libs/jquery/jquery.ui.core.js @@ -0,0 +1,519 @@ +/* + * jQuery UI 1.7.1 + * + * Copyright (c) 2009 AUTHORS.txt (http://jqueryui.com/about) + * Dual licensed under the MIT (MIT-LICENSE.txt) + * and GPL (GPL-LICENSE.txt) licenses. + * + * http://docs.jquery.com/UI + */ +;jQuery.ui || (function($) { + +var _remove = $.fn.remove, + isFF2 = $.browser.mozilla && (parseFloat($.browser.version) < 1.9); + +//Helper functions and ui object +$.ui = { + version: "1.7.1", + + // $.ui.plugin is deprecated. Use the proxy pattern instead. + plugin: { + add: function(module, option, set) { + var proto = $.ui[module].prototype; + for(var i in set) { + proto.plugins[i] = proto.plugins[i] || []; + proto.plugins[i].push([option, set[i]]); + } + }, + call: function(instance, name, args) { + var set = instance.plugins[name]; + if(!set || !instance.element[0].parentNode) { return; } + + for (var i = 0; i < set.length; i++) { + if (instance.options[set[i][0]]) { + set[i][1].apply(instance.element, args); + } + } + } + }, + + contains: function(a, b) { + return document.compareDocumentPosition + ? a.compareDocumentPosition(b) & 16 + : a !== b && a.contains(b); + }, + + hasScroll: function(el, a) { + + //If overflow is hidden, the element might have extra content, but the user wants to hide it + if ($(el).css('overflow') == 'hidden') { return false; } + + var scroll = (a && a == 'left') ? 'scrollLeft' : 'scrollTop', + has = false; + + if (el[scroll] > 0) { return true; } + + // TODO: determine which cases actually cause this to happen + // if the element doesn't have the scroll set, see if it's possible to + // set the scroll + el[scroll] = 1; + has = (el[scroll] > 0); + el[scroll] = 0; + return has; + }, + + isOverAxis: function(x, reference, size) { + //Determines when x coordinate is over "b" element axis + return (x > reference) && (x < (reference + size)); + }, + + isOver: function(y, x, top, left, height, width) { + //Determines when x, y coordinates is over "b" element + return $.ui.isOverAxis(y, top, height) && $.ui.isOverAxis(x, left, width); + }, + + keyCode: { + BACKSPACE: 8, + CAPS_LOCK: 20, + COMMA: 188, + CONTROL: 17, + DELETE: 46, + DOWN: 40, + END: 35, + ENTER: 13, + ESCAPE: 27, + HOME: 36, + INSERT: 45, + LEFT: 37, + NUMPAD_ADD: 107, + NUMPAD_DECIMAL: 110, + NUMPAD_DIVIDE: 111, + NUMPAD_ENTER: 108, + NUMPAD_MULTIPLY: 106, + NUMPAD_SUBTRACT: 109, + PAGE_DOWN: 34, + PAGE_UP: 33, + PERIOD: 190, + RIGHT: 39, + SHIFT: 16, + SPACE: 32, + TAB: 9, + UP: 38 + } +}; + +// WAI-ARIA normalization +if (isFF2) { + var attr = $.attr, + removeAttr = $.fn.removeAttr, + ariaNS = "http://www.w3.org/2005/07/aaa", + ariaState = /^aria-/, + ariaRole = /^wairole:/; + + $.attr = function(elem, name, value) { + var set = value !== undefined; + + return (name == 'role' + ? (set + ? attr.call(this, elem, name, "wairole:" + value) + : (attr.apply(this, arguments) || "").replace(ariaRole, "")) + : (ariaState.test(name) + ? (set + ? elem.setAttributeNS(ariaNS, + name.replace(ariaState, "aaa:"), value) + : attr.call(this, elem, name.replace(ariaState, "aaa:"))) + : attr.apply(this, arguments))); + }; + + $.fn.removeAttr = function(name) { + return (ariaState.test(name) + ? this.each(function() { + this.removeAttributeNS(ariaNS, name.replace(ariaState, "")); + }) : removeAttr.call(this, name)); + }; +} + +//jQuery plugins +$.fn.extend({ + remove: function() { + // Safari has a native remove event which actually removes DOM elements, + // so we have to use triggerHandler instead of trigger (#3037). + $("*", this).add(this).each(function() { + $(this).triggerHandler("remove"); + }); + return _remove.apply(this, arguments ); + }, + + enableSelection: function() { + return this + .attr('unselectable', 'off') + .css('MozUserSelect', '') + .unbind('selectstart.ui'); + }, + + disableSelection: function() { + return this + .attr('unselectable', 'on') + .css('MozUserSelect', 'none') + .bind('selectstart.ui', function() { return false; }); + }, + + scrollParent: function() { + var scrollParent; + if(($.browser.msie && (/(static|relative)/).test(this.css('position'))) || (/absolute/).test(this.css('position'))) { + scrollParent = this.parents().filter(function() { + return (/(relative|absolute|fixed)/).test($.curCSS(this,'position',1)) && (/(auto|scroll)/).test($.curCSS(this,'overflow',1)+$.curCSS(this,'overflow-y',1)+$.curCSS(this,'overflow-x',1)); + }).eq(0); + } else { + scrollParent = this.parents().filter(function() { + return (/(auto|scroll)/).test($.curCSS(this,'overflow',1)+$.curCSS(this,'overflow-y',1)+$.curCSS(this,'overflow-x',1)); + }).eq(0); + } + + return (/fixed/).test(this.css('position')) || !scrollParent.length ? $(document) : scrollParent; + } +}); + + +//Additional selectors +$.extend($.expr[':'], { + data: function(elem, i, match) { + return !!$.data(elem, match[3]); + }, + + focusable: function(element) { + var nodeName = element.nodeName.toLowerCase(), + tabIndex = $.attr(element, 'tabindex'); + return (/input|select|textarea|button|object/.test(nodeName) + ? !element.disabled + : 'a' == nodeName || 'area' == nodeName + ? element.href || !isNaN(tabIndex) + : !isNaN(tabIndex)) + // the element and all of its ancestors must be visible + // the browser may report that the area is hidden + && !$(element)['area' == nodeName ? 'parents' : 'closest'](':hidden').length; + }, + + tabbable: function(element) { + var tabIndex = $.attr(element, 'tabindex'); + return (isNaN(tabIndex) || tabIndex >= 0) && $(element).is(':focusable'); + } +}); + + +// $.widget is a factory to create jQuery plugins +// taking some boilerplate code out of the plugin code +function getter(namespace, plugin, method, args) { + function getMethods(type) { + var methods = $[namespace][plugin][type] || []; + return (typeof methods == 'string' ? methods.split(/,?\s+/) : methods); + } + + var methods = getMethods('getter'); + if (args.length == 1 && typeof args[0] == 'string') { + methods = methods.concat(getMethods('getterSetter')); + } + return ($.inArray(method, methods) != -1); +} + +$.widget = function(name, prototype) { + var namespace = name.split(".")[0]; + name = name.split(".")[1]; + + // create plugin method + $.fn[name] = function(options) { + var isMethodCall = (typeof options == 'string'), + args = Array.prototype.slice.call(arguments, 1); + + // prevent calls to internal methods + if (isMethodCall && options.substring(0, 1) == '_') { + return this; + } + + // handle getter methods + if (isMethodCall && getter(namespace, name, options, args)) { + var instance = $.data(this[0], name); + return (instance ? instance[options].apply(instance, args) + : undefined); + } + + // handle initialization and non-getter methods + return this.each(function() { + var instance = $.data(this, name); + + // constructor + (!instance && !isMethodCall && + $.data(this, name, new $[namespace][name](this, options))._init()); + + // method call + (instance && isMethodCall && $.isFunction(instance[options]) && + instance[options].apply(instance, args)); + }); + }; + + // create widget constructor + $[namespace] = $[namespace] || {}; + $[namespace][name] = function(element, options) { + var self = this; + + this.namespace = namespace; + this.widgetName = name; + this.widgetEventPrefix = $[namespace][name].eventPrefix || name; + this.widgetBaseClass = namespace + '-' + name; + + this.options = $.extend({}, + $.widget.defaults, + $[namespace][name].defaults, + $.metadata && $.metadata.get(element)[name], + options); + + this.element = $(element) + .bind('setData.' + name, function(event, key, value) { + if (event.target == element) { + return self._setData(key, value); + } + }) + .bind('getData.' + name, function(event, key) { + if (event.target == element) { + return self._getData(key); + } + }) + .bind('remove', function() { + return self.destroy(); + }); + }; + + // add widget prototype + $[namespace][name].prototype = $.extend({}, $.widget.prototype, prototype); + + // TODO: merge getter and getterSetter properties from widget prototype + // and plugin prototype + $[namespace][name].getterSetter = 'option'; +}; + +$.widget.prototype = { + _init: function() {}, + destroy: function() { + this.element.removeData(this.widgetName) + .removeClass(this.widgetBaseClass + '-disabled' + ' ' + this.namespace + '-state-disabled') + .removeAttr('aria-disabled'); + }, + + option: function(key, value) { + var options = key, + self = this; + + if (typeof key == "string") { + if (value === undefined) { + return this._getData(key); + } + options = {}; + options[key] = value; + } + + $.each(options, function(key, value) { + self._setData(key, value); + }); + }, + _getData: function(key) { + return this.options[key]; + }, + _setData: function(key, value) { + this.options[key] = value; + + if (key == 'disabled') { + this.element + [value ? 'addClass' : 'removeClass']( + this.widgetBaseClass + '-disabled' + ' ' + + this.namespace + '-state-disabled') + .attr("aria-disabled", value); + } + }, + + enable: function() { + this._setData('disabled', false); + }, + disable: function() { + this._setData('disabled', true); + }, + + _trigger: function(type, event, data) { + var callback = this.options[type], + eventName = (type == this.widgetEventPrefix + ? type : this.widgetEventPrefix + type); + + event = $.Event(event); + event.type = eventName; + + // copy original event properties over to the new event + // this would happen if we could call $.event.fix instead of $.Event + // but we don't have a way to force an event to be fixed multiple times + if (event.originalEvent) { + for (var i = $.event.props.length, prop; i;) { + prop = $.event.props[--i]; + event[prop] = event.originalEvent[prop]; + } + } + + this.element.trigger(event, data); + + return !($.isFunction(callback) && callback.call(this.element[0], event, data) === false + || event.isDefaultPrevented()); + } +}; + +$.widget.defaults = { + disabled: false +}; + + +/** Mouse Interaction Plugin **/ + +$.ui.mouse = { + _mouseInit: function() { + var self = this; + + this.element + .bind('mousedown.'+this.widgetName, function(event) { + return self._mouseDown(event); + }) + .bind('click.'+this.widgetName, function(event) { + if(self._preventClickEvent) { + self._preventClickEvent = false; + event.stopImmediatePropagation(); + return false; + } + }); + + // Prevent text selection in IE + if ($.browser.msie) { + this._mouseUnselectable = this.element.attr('unselectable'); + this.element.attr('unselectable', 'on'); + } + + this.started = false; + }, + + // TODO: make sure destroying one instance of mouse doesn't mess with + // other instances of mouse + _mouseDestroy: function() { + this.element.unbind('.'+this.widgetName); + + // Restore text selection in IE + ($.browser.msie + && this.element.attr('unselectable', this._mouseUnselectable)); + }, + + _mouseDown: function(event) { + // don't let more than one widget handle mouseStart + // TODO: figure out why we have to use originalEvent + event.originalEvent = event.originalEvent || {}; + if (event.originalEvent.mouseHandled) { return; } + + // we may have missed mouseup (out of window) + (this._mouseStarted && this._mouseUp(event)); + + this._mouseDownEvent = event; + + var self = this, + btnIsLeft = (event.which == 1), + elIsCancel = (typeof this.options.cancel == "string" ? $(event.target).parents().add(event.target).filter(this.options.cancel).length : false); + if (!btnIsLeft || elIsCancel || !this._mouseCapture(event)) { + return true; + } + + this.mouseDelayMet = !this.options.delay; + if (!this.mouseDelayMet) { + this._mouseDelayTimer = setTimeout(function() { + self.mouseDelayMet = true; + }, this.options.delay); + } + + if (this._mouseDistanceMet(event) && this._mouseDelayMet(event)) { + this._mouseStarted = (this._mouseStart(event) !== false); + if (!this._mouseStarted) { + event.preventDefault(); + return true; + } + } + + // these delegates are required to keep context + this._mouseMoveDelegate = function(event) { + return self._mouseMove(event); + }; + this._mouseUpDelegate = function(event) { + return self._mouseUp(event); + }; + $(document) + .bind('mousemove.'+this.widgetName, this._mouseMoveDelegate) + .bind('mouseup.'+this.widgetName, this._mouseUpDelegate); + + // preventDefault() is used to prevent the selection of text here - + // however, in Safari, this causes select boxes not to be selectable + // anymore, so this fix is needed + ($.browser.safari || event.preventDefault()); + + event.originalEvent.mouseHandled = true; + return true; + }, + + _mouseMove: function(event) { + // IE mouseup check - mouseup happened when mouse was out of window + if ($.browser.msie && !event.button) { + return this._mouseUp(event); + } + + if (this._mouseStarted) { + this._mouseDrag(event); + return event.preventDefault(); + } + + if (this._mouseDistanceMet(event) && this._mouseDelayMet(event)) { + this._mouseStarted = + (this._mouseStart(this._mouseDownEvent, event) !== false); + (this._mouseStarted ? this._mouseDrag(event) : this._mouseUp(event)); + } + + return !this._mouseStarted; + }, + + _mouseUp: function(event) { + $(document) + .unbind('mousemove.'+this.widgetName, this._mouseMoveDelegate) + .unbind('mouseup.'+this.widgetName, this._mouseUpDelegate); + + if (this._mouseStarted) { + this._mouseStarted = false; + this._preventClickEvent = (event.target == this._mouseDownEvent.target); + this._mouseStop(event); + } + + return false; + }, + + _mouseDistanceMet: function(event) { + return (Math.max( + Math.abs(this._mouseDownEvent.pageX - event.pageX), + Math.abs(this._mouseDownEvent.pageY - event.pageY) + ) >= this.options.distance + ); + }, + + _mouseDelayMet: function(event) { + return this.mouseDelayMet; + }, + + // These are placeholder methods, to be overriden by extending plugin + _mouseStart: function(event) {}, + _mouseDrag: function(event) {}, + _mouseStop: function(event) {}, + _mouseCapture: function(event) { return true; } +}; + +$.ui.mouse.defaults = { + cancel: null, + distance: 1, + delay: 0 +}; + +})(jQuery); diff -r f076e439d46e1bd66a9a5dd0c75c69c0a11550ed -r e27c236c05e5d65f3ce92f271a712419e7fd73a5 static/scripts/packed/autocomplete_tagging.js --- a/static/scripts/packed/autocomplete_tagging.js +++ /dev/null @@ -1,1 +0,0 @@ -function init_tag_click_function(b,a){$(b).find(".tag-name").each(function(){$(this).click(function(){var d=$(this).text();var c=d.split(":");a(c[0],c[1]);return true})})}jQuery.fn.autocomplete_tagging=function(m){var f={get_toggle_link_text_fn:function(n){var p="";var o=obj_length(n);if(o>0){p=o+(o>1?" 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false}if((t.keyCode===188)||(t.keyCode===32)){s=s.substring(0,s.length-1)}s=$.trim(s);if(s.length<2){return false}this.value="";var q=j(s);var p=b.children(".tag-button");if(p.length!==0){var u=p.slice(p.length-1);u.after(q)}else{b.prepend(q)}var o=s.split(":");d.tags[o[0]]=o[1];var r=d.get_toggle_link_text_fn(d.tags);e.text(r);var n=$(this);$.ajax({url:d.ajax_add_tag_url,data:{new_tag:s},error:function(){q.remove();delete d.tags[o[0]];var v=d.get_toggle_link_text_fn(d.tags);e.text(v);alert("Add tag failed")},success:function(){n.flushCache()}});return false}}});var i=function(q,p,o,s,r){var n=s.split(":");return(n.length===1?n[0]:n[1])};var h={selectFirst:false,formatItem:i,autoFill:false,highlight:false};a.autocomplete(d.ajax_autocomplete_tag_url,h);g.find(".delete-tag-img").each(function(){c($(this))});init_tag_click_function($(this),d.tag_click_fn);l.click(function(){$(this).hide();b.click();return false});if(d.editable){b.bind("blur",function(n){if(obj_length(d.tags)>0){l.show();a.hide();b.removeClass("active-tag-area");b.addClass("tooltip")}else{}});b.click(function(p){var o=$(this).hasClass("active-tag-area");if($(p.target).hasClass("delete-tag-img")&&!o){return false}if($(p.target).hasClass("tag-name")&&!o){return false}$(this).removeClass("tooltip");$(this).addClass("active-tag-area");l.hide();a.show();a.focus();var n=function(r){var q=function(s,u){var t=s.attr("id");if(u!==s){s.blur();$(window).unbind("click.tagging_blur");$(this).addClass("tooltip")}};q(b,$(r.target))};$(window).bind("click.tagging_blur",n);return false})}if(d.use_toggle_link){b.hide()}function k(o,n){return o+(n?":"+n:"")}function c(n){$(n).mouseenter(function(){$(this).attr("src",d.delete_tag_img_rollover)});$(n).mouseleave(function(){$(this).attr("src",d.delete_tag_img)});$(n).click(function(){var t=$(this).parent();var s=t.find(".tag-name").eq(0);var r=s.text();var p=r.split(":");var v=p[0];var 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Use the proxy pattern instead. - plugin: { - add: function(module, option, set) { - var proto = $.ui[module].prototype; - for(var i in set) { - proto.plugins[i] = proto.plugins[i] || []; - proto.plugins[i].push([option, set[i]]); - } - }, - call: function(instance, name, args) { - var set = instance.plugins[name]; - if(!set || !instance.element[0].parentNode) { return; } - - for (var i = 0; i < set.length; i++) { - if (instance.options[set[i][0]]) { - set[i][1].apply(instance.element, args); - } - } - } - }, - - contains: function(a, b) { - return document.compareDocumentPosition - ? a.compareDocumentPosition(b) & 16 - : a !== b && a.contains(b); - }, - - hasScroll: function(el, a) { - - //If overflow is hidden, the element might have extra content, but the user wants to hide it - if ($(el).css('overflow') == 'hidden') { return false; } - - var scroll = (a && a == 'left') ? 'scrollLeft' : 'scrollTop', - has = false; - - if (el[scroll] > 0) { return true; } - - // TODO: determine which cases actually cause this to happen - // if the element doesn't have the scroll set, see if it's possible to - // set the scroll - el[scroll] = 1; - has = (el[scroll] > 0); - el[scroll] = 0; - return has; - }, - - isOverAxis: function(x, reference, size) { - //Determines when x coordinate is over "b" element axis - return (x > reference) && (x < (reference + size)); - }, - - isOver: function(y, x, top, left, height, width) { - //Determines when x, y coordinates is over "b" element - return $.ui.isOverAxis(y, top, height) && $.ui.isOverAxis(x, left, width); - }, - - keyCode: { - BACKSPACE: 8, - CAPS_LOCK: 20, - COMMA: 188, - CONTROL: 17, - DELETE: 46, - DOWN: 40, - END: 35, - ENTER: 13, - ESCAPE: 27, - HOME: 36, - INSERT: 45, - LEFT: 37, - NUMPAD_ADD: 107, - NUMPAD_DECIMAL: 110, - NUMPAD_DIVIDE: 111, - NUMPAD_ENTER: 108, - NUMPAD_MULTIPLY: 106, - NUMPAD_SUBTRACT: 109, - PAGE_DOWN: 34, - PAGE_UP: 33, - PERIOD: 190, - RIGHT: 39, - SHIFT: 16, - SPACE: 32, - TAB: 9, - UP: 38 - } -}; - -// WAI-ARIA normalization -if (isFF2) { - var attr = $.attr, - removeAttr = $.fn.removeAttr, - ariaNS = "http://www.w3.org/2005/07/aaa", - ariaState = /^aria-/, - ariaRole = /^wairole:/; - - $.attr = function(elem, name, value) { - var set = value !== undefined; - - return (name == 'role' - ? (set - ? attr.call(this, elem, name, "wairole:" + value) - : (attr.apply(this, arguments) || "").replace(ariaRole, "")) - : (ariaState.test(name) - ? (set - ? elem.setAttributeNS(ariaNS, - name.replace(ariaState, "aaa:"), value) - : attr.call(this, elem, name.replace(ariaState, "aaa:"))) - : attr.apply(this, arguments))); - }; - - $.fn.removeAttr = function(name) { - return (ariaState.test(name) - ? this.each(function() { - this.removeAttributeNS(ariaNS, name.replace(ariaState, "")); - }) : removeAttr.call(this, name)); - }; -} - -//jQuery plugins -$.fn.extend({ - remove: function() { - // Safari has a native remove event which actually removes DOM elements, - // so we have to use triggerHandler instead of trigger (#3037). - $("*", this).add(this).each(function() { - $(this).triggerHandler("remove"); - }); - return _remove.apply(this, arguments ); - }, - - enableSelection: function() { - return this - .attr('unselectable', 'off') - .css('MozUserSelect', '') - .unbind('selectstart.ui'); - }, - - disableSelection: function() { - return this - .attr('unselectable', 'on') - .css('MozUserSelect', 'none') - .bind('selectstart.ui', function() { return false; }); - }, - - scrollParent: function() { - var scrollParent; - if(($.browser.msie && (/(static|relative)/).test(this.css('position'))) || (/absolute/).test(this.css('position'))) { - scrollParent = this.parents().filter(function() { - return (/(relative|absolute|fixed)/).test($.curCSS(this,'position',1)) && (/(auto|scroll)/).test($.curCSS(this,'overflow',1)+$.curCSS(this,'overflow-y',1)+$.curCSS(this,'overflow-x',1)); - }).eq(0); - } else { - scrollParent = this.parents().filter(function() { - return (/(auto|scroll)/).test($.curCSS(this,'overflow',1)+$.curCSS(this,'overflow-y',1)+$.curCSS(this,'overflow-x',1)); - }).eq(0); - } - - return (/fixed/).test(this.css('position')) || !scrollParent.length ? $(document) : scrollParent; - } -}); - - -//Additional selectors -$.extend($.expr[':'], { - data: function(elem, i, match) { - return !!$.data(elem, match[3]); - }, - - focusable: function(element) { - var nodeName = element.nodeName.toLowerCase(), - tabIndex = $.attr(element, 'tabindex'); - return (/input|select|textarea|button|object/.test(nodeName) - ? !element.disabled - : 'a' == nodeName || 'area' == nodeName - ? element.href || !isNaN(tabIndex) - : !isNaN(tabIndex)) - // the element and all of its ancestors must be visible - // the browser may report that the area is hidden - && !$(element)['area' == nodeName ? 'parents' : 'closest'](':hidden').length; - }, - - tabbable: function(element) { - var tabIndex = $.attr(element, 'tabindex'); - return (isNaN(tabIndex) || tabIndex >= 0) && $(element).is(':focusable'); - } -}); - - -// $.widget is a factory to create jQuery plugins -// taking some boilerplate code out of the plugin code -function getter(namespace, plugin, method, args) { - function getMethods(type) { - var methods = $[namespace][plugin][type] || []; - return (typeof methods == 'string' ? methods.split(/,?\s+/) : methods); - } - - var methods = getMethods('getter'); - if (args.length == 1 && typeof args[0] == 'string') { - methods = methods.concat(getMethods('getterSetter')); - } - return ($.inArray(method, methods) != -1); -} - -$.widget = function(name, prototype) { - var namespace = name.split(".")[0]; - name = name.split(".")[1]; - - // create plugin method - $.fn[name] = function(options) { - var isMethodCall = (typeof options == 'string'), - args = Array.prototype.slice.call(arguments, 1); - - // prevent calls to internal methods - if (isMethodCall && options.substring(0, 1) == '_') { - return this; - } - - // handle getter methods - if (isMethodCall && getter(namespace, name, options, args)) { - var instance = $.data(this[0], name); - return (instance ? instance[options].apply(instance, args) - : undefined); - } - - // handle initialization and non-getter methods - return this.each(function() { - var instance = $.data(this, name); - - // constructor - (!instance && !isMethodCall && - $.data(this, name, new $[namespace][name](this, options))._init()); - - // method call - (instance && isMethodCall && $.isFunction(instance[options]) && - instance[options].apply(instance, args)); - }); - }; - - // create widget constructor - $[namespace] = $[namespace] || {}; - $[namespace][name] = function(element, options) { - var self = this; - - this.namespace = namespace; - this.widgetName = name; - this.widgetEventPrefix = $[namespace][name].eventPrefix || name; - this.widgetBaseClass = namespace + '-' + name; - - this.options = $.extend({}, - $.widget.defaults, - $[namespace][name].defaults, - $.metadata && $.metadata.get(element)[name], - options); - - this.element = $(element) - .bind('setData.' + name, function(event, key, value) { - if (event.target == element) { - return self._setData(key, value); - } - }) - .bind('getData.' + name, function(event, key) { - if (event.target == element) { - return self._getData(key); - } - }) - .bind('remove', function() { - return self.destroy(); - }); - }; - - // add widget prototype - $[namespace][name].prototype = $.extend({}, $.widget.prototype, prototype); - - // TODO: merge getter and getterSetter properties from widget prototype - // and plugin prototype - $[namespace][name].getterSetter = 'option'; -}; - -$.widget.prototype = { - _init: function() {}, - destroy: function() { - this.element.removeData(this.widgetName) - .removeClass(this.widgetBaseClass + '-disabled' + ' ' + this.namespace + '-state-disabled') - .removeAttr('aria-disabled'); - }, - - option: function(key, value) { - var options = key, - self = this; - - if (typeof key == "string") { - if (value === undefined) { - return this._getData(key); - } - options = {}; - options[key] = value; - } - - $.each(options, function(key, value) { - self._setData(key, value); - }); - }, - _getData: function(key) { - return this.options[key]; - }, - _setData: function(key, value) { - this.options[key] = value; - - if (key == 'disabled') { - this.element - [value ? 'addClass' : 'removeClass']( - this.widgetBaseClass + '-disabled' + ' ' + - this.namespace + '-state-disabled') - .attr("aria-disabled", value); - } - }, - - enable: function() { - this._setData('disabled', false); - }, - disable: function() { - this._setData('disabled', true); - }, - - _trigger: function(type, event, data) { - var callback = this.options[type], - eventName = (type == this.widgetEventPrefix - ? type : this.widgetEventPrefix + type); - - event = $.Event(event); - event.type = eventName; - - // copy original event properties over to the new event - // this would happen if we could call $.event.fix instead of $.Event - // but we don't have a way to force an event to be fixed multiple times - if (event.originalEvent) { - for (var i = $.event.props.length, prop; i;) { - prop = $.event.props[--i]; - event[prop] = event.originalEvent[prop]; - } - } - - this.element.trigger(event, data); - - return !($.isFunction(callback) && callback.call(this.element[0], event, data) === false - || event.isDefaultPrevented()); - } -}; - -$.widget.defaults = { - disabled: false -}; - - -/** Mouse Interaction Plugin **/ - -$.ui.mouse = { - _mouseInit: function() { - var self = this; - - this.element - .bind('mousedown.'+this.widgetName, function(event) { - return self._mouseDown(event); - }) - .bind('click.'+this.widgetName, function(event) { - if(self._preventClickEvent) { - self._preventClickEvent = false; - event.stopImmediatePropagation(); - return false; - } - }); - - // Prevent text selection in IE - if ($.browser.msie) { - this._mouseUnselectable = this.element.attr('unselectable'); - this.element.attr('unselectable', 'on'); - } - - this.started = false; - }, - - // TODO: make sure destroying one instance of mouse doesn't mess with - // other instances of mouse - _mouseDestroy: function() { - this.element.unbind('.'+this.widgetName); - - // Restore text selection in IE - ($.browser.msie - && this.element.attr('unselectable', this._mouseUnselectable)); - }, - - _mouseDown: function(event) { - // don't let more than one widget handle mouseStart - // TODO: figure out why we have to use originalEvent - event.originalEvent = event.originalEvent || {}; - if (event.originalEvent.mouseHandled) { return; } - - // we may have missed mouseup (out of window) - (this._mouseStarted && this._mouseUp(event)); - - this._mouseDownEvent = event; - - var self = this, - btnIsLeft = (event.which == 1), - elIsCancel = (typeof this.options.cancel == "string" ? $(event.target).parents().add(event.target).filter(this.options.cancel).length : false); - if (!btnIsLeft || elIsCancel || !this._mouseCapture(event)) { - return true; - } - - this.mouseDelayMet = !this.options.delay; - if (!this.mouseDelayMet) { - this._mouseDelayTimer = setTimeout(function() { - self.mouseDelayMet = true; - }, this.options.delay); - } - - if (this._mouseDistanceMet(event) && this._mouseDelayMet(event)) { - this._mouseStarted = (this._mouseStart(event) !== false); - if (!this._mouseStarted) { - event.preventDefault(); - return true; - } - } - - // these delegates are required to keep context - this._mouseMoveDelegate = function(event) { - return self._mouseMove(event); - }; - this._mouseUpDelegate = function(event) { - return self._mouseUp(event); - }; - $(document) - .bind('mousemove.'+this.widgetName, this._mouseMoveDelegate) - .bind('mouseup.'+this.widgetName, this._mouseUpDelegate); - - // preventDefault() is used to prevent the selection of text here - - // however, in Safari, this causes select boxes not to be selectable - // anymore, so this fix is needed - ($.browser.safari || event.preventDefault()); - - event.originalEvent.mouseHandled = true; - return true; - }, - - _mouseMove: function(event) { - // IE mouseup check - mouseup happened when mouse was out of window - if ($.browser.msie && !event.button) { - return this._mouseUp(event); - } - - if (this._mouseStarted) { - this._mouseDrag(event); - return event.preventDefault(); - } - - if (this._mouseDistanceMet(event) && this._mouseDelayMet(event)) { - this._mouseStarted = - (this._mouseStart(this._mouseDownEvent, event) !== false); - (this._mouseStarted ? this._mouseDrag(event) : this._mouseUp(event)); - } - - return !this._mouseStarted; - }, - - _mouseUp: function(event) { - $(document) - .unbind('mousemove.'+this.widgetName, this._mouseMoveDelegate) - .unbind('mouseup.'+this.widgetName, this._mouseUpDelegate); - - if (this._mouseStarted) { - this._mouseStarted = false; - this._preventClickEvent = (event.target == this._mouseDownEvent.target); - this._mouseStop(event); - } - - return false; - }, - - _mouseDistanceMet: function(event) { - return (Math.max( - Math.abs(this._mouseDownEvent.pageX - event.pageX), - Math.abs(this._mouseDownEvent.pageY - event.pageY) - ) >= this.options.distance - ); - }, - - _mouseDelayMet: function(event) { - return this.mouseDelayMet; - }, - - // These are placeholder methods, to be overriden by extending plugin - _mouseStart: function(event) {}, - _mouseDrag: function(event) {}, - _mouseStop: function(event) {}, - _mouseCapture: function(event) { return true; } -}; - -$.ui.mouse.defaults = { - cancel: null, - distance: 1, - delay: 0 -}; - -})(jQuery); diff -r f076e439d46e1bd66a9a5dd0c75c69c0a11550ed -r e27c236c05e5d65f3ce92f271a712419e7fd73a5 templates/admin/data_admin/data_form.mako --- a/templates/admin/data_admin/data_form.mako +++ b/templates/admin/data_admin/data_form.mako @@ -27,7 +27,7 @@ </%def><%def name="javascripts()"> ${parent.javascripts()} - ${h.js("libs/jquery/jquery.autocomplete", "autocomplete_tagging" )} + ${h.js("libs/jquery/jquery.autocomplete", "galaxy.autocom_tagging" )} </%def> ## ## Override methods from base.mako and base_panels.mako diff -r f076e439d46e1bd66a9a5dd0c75c69c0a11550ed -r e27c236c05e5d65f3ce92f271a712419e7fd73a5 templates/admin/data_admin/generic_error.mako --- a/templates/admin/data_admin/generic_error.mako +++ b/templates/admin/data_admin/generic_error.mako @@ -27,7 +27,7 @@ </%def><%def name="javascripts()"> ${parent.javascripts()} - ${h.js("libs/jquery/jquery.autocomplete", "autocomplete_tagging" )} + ${h.js("libs/jquery/jquery.autocomplete", "galaxy.autocom_tagging" )} </%def> ## ## Override methods from base.mako and base_panels.mako diff -r f076e439d46e1bd66a9a5dd0c75c69c0a11550ed -r e27c236c05e5d65f3ce92f271a712419e7fd73a5 templates/admin/data_admin/local_data.mako --- a/templates/admin/data_admin/local_data.mako +++ b/templates/admin/data_admin/local_data.mako @@ -27,7 +27,7 @@ </%def><%def name="javascripts()"> ${parent.javascripts()} - ${h.js("libs/jquery/jquery.autocomplete", "autocomplete_tagging" )} + ${h.js("libs/jquery/jquery.autocomplete", "galaxy.autocom_tagging" )} </%def> ## ## Override methods from base.mako and base_panels.mako diff -r f076e439d46e1bd66a9a5dd0c75c69c0a11550ed -r e27c236c05e5d65f3ce92f271a712419e7fd73a5 templates/admin/requests/select_datasets_to_transfer.mako --- a/templates/admin/requests/select_datasets_to_transfer.mako +++ b/templates/admin/requests/select_datasets_to_transfer.mako @@ -8,7 +8,7 @@ ${common_javascripts()} </%def> -${h.js( "ui.core", "libs/jquery/jquery.cookie", "libs/jquery/jquery.dynatree" )} +${h.js( "libs/jquery/jquery.ui.core", "libs/jquery/jquery.cookie", "libs/jquery/jquery.dynatree" )} ${h.css( "dynatree_skin/ui.dynatree" )} <script type="text/javascript"> diff -r f076e439d46e1bd66a9a5dd0c75c69c0a11550ed -r e27c236c05e5d65f3ce92f271a712419e7fd73a5 templates/admin/tool_shed_repository/browse_repository.mako --- a/templates/admin/tool_shed_repository/browse_repository.mako +++ b/templates/admin/tool_shed_repository/browse_repository.mako @@ -9,7 +9,7 @@ <%def name="javascripts()"> ${parent.javascripts()} - ${h.js( "ui.core", "libs/jquery/jquery.dynatree" )} + ${h.js( "libs/jquery/jquery.ui.core", "libs/jquery/jquery.dynatree" )} ${browse_files(repository.name, repository.repo_files_directory(trans.app))} </%def> diff -r f076e439d46e1bd66a9a5dd0c75c69c0a11550ed -r e27c236c05e5d65f3ce92f271a712419e7fd73a5 templates/admin/tool_shed_repository/browse_tool_dependency.mako --- a/templates/admin/tool_shed_repository/browse_tool_dependency.mako +++ b/templates/admin/tool_shed_repository/browse_tool_dependency.mako @@ -9,7 +9,7 @@ <%def name="javascripts()"> ${parent.javascripts()} - ${h.js( "ui.core", "libs/jquery/jquery.dynatree" )} + ${h.js( "libs/jquery/jquery.ui.core", "libs/jquery/jquery.dynatree" )} ${browse_files(tool_dependency.name, tool_dependency.installation_directory( trans.app ))} </%def> diff -r f076e439d46e1bd66a9a5dd0c75c69c0a11550ed -r e27c236c05e5d65f3ce92f271a712419e7fd73a5 templates/dataset/edit_attributes.mako --- a/templates/dataset/edit_attributes.mako +++ b/templates/dataset/edit_attributes.mako @@ -11,7 +11,7 @@ <%def name="javascripts()"> ${parent.javascripts()} ${message_ns.javascripts()} - ${h.js( "galaxy.base", "libs/jquery/jquery.autocomplete", "autocomplete_tagging" )} + ${h.js( "galaxy.base", "libs/jquery/jquery.autocomplete", "galaxy.autocom_tagging" )} </%def><%def name="datatype( dataset, datatypes )"> diff -r f076e439d46e1bd66a9a5dd0c75c69c0a11550ed -r e27c236c05e5d65f3ce92f271a712419e7fd73a5 templates/display_base.mako --- a/templates/display_base.mako +++ b/templates/display_base.mako @@ -33,7 +33,7 @@ <%def name="javascripts()"> ${parent.javascripts()} ${h.js( "libs/jquery/jquery", "libs/bootstrap", "galaxy.base", "libs/json2", "libs/jquery/jstorage", "libs/jquery/jquery.autocomplete", "libs/jquery/jquery.rating", - "autocomplete_tagging", "viz/trackster", "viz/trackster_ui", "libs/jquery/jquery.event.drag", "libs/jquery/jquery.mousewheel", + "galaxy.autocom_tagging", "viz/trackster", "viz/trackster_ui", "libs/jquery/jquery.event.drag", "libs/jquery/jquery.mousewheel", "libs/jquery/jquery.autocomplete", "libs/jquery/jquery.ui.sortable.slider", "libs/farbtastic", "mvc/data", "viz/visualization" )} <script type="text/javascript"> diff -r f076e439d46e1bd66a9a5dd0c75c69c0a11550ed -r e27c236c05e5d65f3ce92f271a712419e7fd73a5 templates/grid_base.mako --- a/templates/grid_base.mako +++ b/templates/grid_base.mako @@ -52,7 +52,7 @@ </%def><%def name="grid_javascripts()"> - ${h.js("libs/jquery/jquery.autocomplete", "autocomplete_tagging", "libs/jquery/jquery.rating" )} + ${h.js("libs/jquery/jquery.autocomplete", "galaxy.autocom_tagging", "libs/jquery/jquery.rating" )} <script type="text/javascript"> // This is necessary so that, when nested arrays are used in ajax/post/get methods, square brackets ('[]') are // not appended to the identifier of a nested array. diff -r f076e439d46e1bd66a9a5dd0c75c69c0a11550ed -r e27c236c05e5d65f3ce92f271a712419e7fd73a5 templates/library/common/ldda_edit_info.mako --- a/templates/library/common/ldda_edit_info.mako +++ b/templates/library/common/ldda_edit_info.mako @@ -5,7 +5,7 @@ <%def name="javascripts()"> ${parent.javascripts()} - ${h.js("libs/jquery/jquery.autocomplete", "autocomplete_tagging" )} + ${h.js("libs/jquery/jquery.autocomplete", "galaxy.autocom_tagging" )} </%def><%def name="stylesheets()"> diff -r f076e439d46e1bd66a9a5dd0c75c69c0a11550ed -r e27c236c05e5d65f3ce92f271a712419e7fd73a5 templates/library/common/move_library_item.mako --- a/templates/library/common/move_library_item.mako +++ b/templates/library/common/move_library_item.mako @@ -3,7 +3,7 @@ <%def name="javascripts()"> ${parent.javascripts()} - ${h.js("libs/jquery/jquery.autocomplete", "autocomplete_tagging" )} + ${h.js("libs/jquery/jquery.autocomplete", "galaxy.autocom_tagging" )} </%def><%def name="stylesheets()"> diff -r f076e439d46e1bd66a9a5dd0c75c69c0a11550ed -r e27c236c05e5d65f3ce92f271a712419e7fd73a5 templates/library/common/upload.mako --- a/templates/library/common/upload.mako +++ b/templates/library/common/upload.mako @@ -13,7 +13,7 @@ <%def name="javascripts()"> ${parent.javascripts()} - ${h.js("libs/jquery/jquery.autocomplete", "autocomplete_tagging" )} + ${h.js("libs/jquery/jquery.autocomplete", "galaxy.autocom_tagging" )} </%def><%def name="stylesheets()"> diff -r f076e439d46e1bd66a9a5dd0c75c69c0a11550ed -r e27c236c05e5d65f3ce92f271a712419e7fd73a5 templates/page/editor.mako --- a/templates/page/editor.mako +++ b/templates/page/editor.mako @@ -22,7 +22,7 @@ <%def name="javascripts()"> ${parent.javascripts()} ${h.js( "libs/jquery/jquery.event.drag", "libs/jquery/jquery.event.drop", "libs/jquery/jquery.event.hover", "libs/jquery/jquery.form", "libs/json2", "libs/jquery/jstorage", - "galaxy.base", "libs/jquery/jquery.wymeditor", "libs/jquery/jquery.autocomplete", "autocomplete_tagging")} + "galaxy.base", "libs/jquery/jquery.wymeditor", "libs/jquery/jquery.autocomplete", "galaxy.autocom_tagging")} <script type="text/javascript"> // Useful Galaxy stuff. diff -r f076e439d46e1bd66a9a5dd0c75c69c0a11550ed -r e27c236c05e5d65f3ce92f271a712419e7fd73a5 templates/requests/common/create_request.mako --- a/templates/requests/common/create_request.mako +++ b/templates/requests/common/create_request.mako @@ -3,7 +3,7 @@ <%def name="javascripts()"> ${parent.javascripts()} - ${h.js("libs/jquery/jquery.autocomplete", "autocomplete_tagging" )} + ${h.js("libs/jquery/jquery.autocomplete", "galaxy.autocom_tagging" )} </%def><%def name="stylesheets()"> diff -r f076e439d46e1bd66a9a5dd0c75c69c0a11550ed -r e27c236c05e5d65f3ce92f271a712419e7fd73a5 templates/requests/common/find_samples.mako --- a/templates/requests/common/find_samples.mako +++ b/templates/requests/common/find_samples.mako @@ -3,7 +3,7 @@ <%def name="javascripts()"> ${parent.javascripts()} - ${h.js("libs/jquery/jquery.autocomplete", "autocomplete_tagging" )} + ${h.js("libs/jquery/jquery.autocomplete", "galaxy.autocom_tagging" )} </%def><%def name="stylesheets()"> diff -r f076e439d46e1bd66a9a5dd0c75c69c0a11550ed -r e27c236c05e5d65f3ce92f271a712419e7fd73a5 templates/root/history.mako --- a/templates/root/history.mako +++ b/templates/root/history.mako @@ -17,7 +17,7 @@ <meta http-equiv="Pragma" content="no-cache"> ${h.css( "base", "history", "autocomplete_tagging" )} -${h.js( "libs/jquery/jquery", "libs/bootstrap", "galaxy.base", "libs/json2", "libs/jquery/jstorage", "libs/jquery/jquery.autocomplete", "autocomplete_tagging" )} +${h.js( "libs/jquery/jquery", "libs/bootstrap", "galaxy.base", "libs/json2", "libs/jquery/jstorage", "libs/jquery/jquery.autocomplete", "galaxy.autocom_tagging" )} <script type="text/javascript"> diff -r f076e439d46e1bd66a9a5dd0c75c69c0a11550ed -r e27c236c05e5d65f3ce92f271a712419e7fd73a5 templates/root/tool_menu.mako --- a/templates/root/tool_menu.mako +++ b/templates/root/tool_menu.mako @@ -17,7 +17,7 @@ <%def name="javascripts()"> ${parent.javascripts()} ${h.templates( "tool_link", "panel_section", "tool_search" )} - ${h.js( "galaxy.base", "libs/json2", "autocomplete_tagging", "mvc/tools", "libs/bootstrap" )} + ${h.js( "galaxy.base", "libs/json2", "galaxy.autocom_tagging", "mvc/tools", "libs/bootstrap" )} <% # Set up for creating tool panel. diff -r f076e439d46e1bd66a9a5dd0c75c69c0a11550ed -r e27c236c05e5d65f3ce92f271a712419e7fd73a5 templates/webapps/community/repository/browse_repository.mako --- a/templates/webapps/community/repository/browse_repository.mako +++ b/templates/webapps/community/repository/browse_repository.mako @@ -57,7 +57,7 @@ <%def name="javascripts()"> ${parent.javascripts()} - ${h.js( "libs/jquery/jquery.rating", "ui.core", "libs/jquery/jquery.cookie", "libs/jquery/jquery.dynatree" )} + ${h.js( "libs/jquery/jquery.rating", "libs/jquery/jquery.ui.core", "libs/jquery/jquery.cookie", "libs/jquery/jquery.dynatree" )} ${common_javascripts(repository)} </%def> diff -r f076e439d46e1bd66a9a5dd0c75c69c0a11550ed -r e27c236c05e5d65f3ce92f271a712419e7fd73a5 templates/webapps/community/repository/upload.mako --- a/templates/webapps/community/repository/upload.mako +++ b/templates/webapps/community/repository/upload.mako @@ -28,7 +28,7 @@ <%def name="javascripts()"> ${parent.javascripts()} - ${h.js( "ui.core", "libs/jquery/jquery.cookie", "libs/jquery/jquery.dynatree" )} + ${h.js( "libs/jquery/jquery.ui.core", "libs/jquery/jquery.cookie", "libs/jquery/jquery.dynatree" )} ${common_javascripts(repository)} <script type="text/javascript"> $( function() { diff -r f076e439d46e1bd66a9a5dd0c75c69c0a11550ed -r e27c236c05e5d65f3ce92f271a712419e7fd73a5 templates/workflow/edit_attributes.mako --- a/templates/workflow/edit_attributes.mako +++ b/templates/workflow/edit_attributes.mako @@ -9,7 +9,7 @@ <%def name="javascripts()"> ${parent.javascripts()} - ${h.js( "galaxy.base", "libs/jquery/jquery.autocomplete", "autocomplete_tagging" )} + ${h.js( "galaxy.base", "libs/jquery/jquery.autocomplete", "galaxy.autocom_tagging" )} </%def> %if msg: diff -r f076e439d46e1bd66a9a5dd0c75c69c0a11550ed -r e27c236c05e5d65f3ce92f271a712419e7fd73a5 templates/workflow/editor.mako --- a/templates/workflow/editor.mako +++ b/templates/workflow/editor.mako @@ -36,7 +36,7 @@ "galaxy.base", "galaxy.workflow_editor.canvas", "libs/jquery/jquery.autocomplete", - "autocomplete_tagging")} + "galaxy.autocom_tagging")} <!--[if lt IE 7]><script type='text/javascript'> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: jgoecks: More JS file reorganization: (a) move IE and rgenetics into their own directories; (b) move additional external libraries to libs.
by Bitbucket 21 Aug '12

21 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/f076e439d46e/ changeset: f076e439d46e user: jgoecks date: 2012-08-21 22:54:19 summary: More JS file reorganization: (a) move IE and rgenetics into their own directories; (b) move additional external libraries to libs. affected #: 57 files Diff too large to display. Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: dan: Remove blastxml from datatypes_conf.xml.sample.
by Bitbucket 21 Aug '12

21 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/11a52ade55cd/ changeset: 11a52ade55cd user: dan date: 2012-08-21 22:05:55 summary: Remove blastxml from datatypes_conf.xml.sample. affected #: 1 file diff -r 0548e6380f5ae342f8745c4ee49aba624c618c5d -r 11a52ade55cdcdb1bb6b97741c2f123a3410a2f0 datatypes_conf.xml.sample --- a/datatypes_conf.xml.sample +++ b/datatypes_conf.xml.sample @@ -169,7 +169,6 @@ <datatype extension="linecount" type="galaxy.datatypes.data:LineCount" display_in_upload="false"/><datatype extension="memexml" type="galaxy.datatypes.xml:MEMEXml" mimetype="application/xml" display_in_upload="true"/><datatype extension="cisml" type="galaxy.datatypes.xml:CisML" mimetype="application/xml" display_in_upload="true"/> - <datatype extension="blastxml" type="galaxy.datatypes.xml:BlastXml" mimetype="application/xml" display_in_upload="true"/><datatype extension="xml" type="galaxy.datatypes.xml:GenericXml" mimetype="application/xml" display_in_upload="true"/><datatype extension="vcf" type="galaxy.datatypes.tabular:Vcf" display_in_upload="true"><converter file="vcf_to_bgzip_converter.xml" target_datatype="bgzip"/> @@ -246,7 +245,6 @@ <sniffer type="galaxy.datatypes.binary:TwoBit"/><sniffer type="galaxy.datatypes.binary:Bam"/><sniffer type="galaxy.datatypes.binary:Sff"/> - <sniffer type="galaxy.datatypes.xml:BlastXml"/><sniffer type="galaxy.datatypes.xml:GenericXml"/><sniffer type="galaxy.datatypes.sequence:Maf"/><sniffer type="galaxy.datatypes.sequence:Lav"/> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: jgoecks: Move most jQuery files into own libs directory.
by Bitbucket 21 Aug '12

21 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/0548e6380f5a/ changeset: 0548e6380f5a user: jgoecks date: 2012-08-21 21:52:50 summary: Move most jQuery files into own libs directory. affected #: 104 files Diff too large to display. Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: jgoecks: JavaScript cleanup: (a) create backbone lib in scripts/lib and use for backbone libraries; (b) clean up history.js; (c) pack scripts.
by Bitbucket 21 Aug '12

21 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/6ac6c3d4b907/ changeset: 6ac6c3d4b907 user: jgoecks date: 2012-08-21 20:27:18 summary: JavaScript cleanup: (a) create backbone lib in scripts/lib and use for backbone libraries; (b) clean up history.js; (c) pack scripts. affected #: 19 files Diff too large to display. Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: dannon: Rewrap text in blast tool migration script.
by Bitbucket 21 Aug '12

21 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/9c9a270b7030/ changeset: 9c9a270b7030 user: dannon date: 2012-08-21 16:57:52 summary: Rewrap text in blast tool migration script. affected #: 1 file diff -r 030f3f7d0fdeee1d1052d40fb6ef64f76c395fe7 -r 9c9a270b70304b0fb24d405a8e799e99194242d1 lib/galaxy/tool_shed/migrate/versions/0004_tools.py --- a/lib/galaxy/tool_shed/migrate/versions/0004_tools.py +++ b/lib/galaxy/tool_shed/migrate/versions/0004_tools.py @@ -1,6 +1,8 @@ """ -The NCBI BLAST+ tools have been eliminated from the distribution. The tools and datatypes are are now available in repositories named ncbi_blast_plus -and blast_datatypes, respectively, from the main Galaxy tool shed at http://toolshed.g2.bx.psu.edu will be installed into your local Galaxy instance +The NCBI BLAST+ tools have been eliminated from the distribution. The tools and +datatypes are are now available in repositories named ncbi_blast_plus and +blast_datatypes, respectively, from the main Galaxy tool shed at +http://toolshed.g2.bx.psu.edu will be installed into your local Galaxy instance at the location discussed above by running the following command. """ Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: 2 new changesets
by Bitbucket 21 Aug '12

21 Aug '12

2 new commits in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/eef07ff2b5b5/ changeset: eef07ff2b5b5 user: dannon date: 2012-08-17 17:35:31 summary: Migrate NCBI Blast+ (and blastxml) to the toolshed. affected #: 5 files diff -r 9e9e104ad5c93a2268bb00cfae09b57a31ece13c -r eef07ff2b5b5498fa300f96cefe44f86d8c0e751 lib/galaxy/datatypes/registry.py --- a/lib/galaxy/datatypes/registry.py +++ b/lib/galaxy/datatypes/registry.py @@ -276,7 +276,6 @@ 'axt' : sequence.Axt(), 'bam' : binary.Bam(), 'bed' : interval.Bed(), - 'blastxml' : xml.BlastXml(), 'coverage' : coverage.LastzCoverage(), 'customtrack' : interval.CustomTrack(), 'csfasta' : sequence.csFasta(), @@ -310,7 +309,6 @@ 'axt' : 'text/plain', 'bam' : 'application/octet-stream', 'bed' : 'text/plain', - 'blastxml' : 'application/xml', 'customtrack' : 'text/plain', 'csfasta' : 'text/plain', 'eland' : 'application/octet-stream', @@ -348,7 +346,6 @@ self.sniff_order = [ binary.Bam(), binary.Sff(), - xml.BlastXml(), xml.GenericXml(), sequence.Maf(), sequence.Lav(), diff -r 9e9e104ad5c93a2268bb00cfae09b57a31ece13c -r eef07ff2b5b5498fa300f96cefe44f86d8c0e751 lib/galaxy/datatypes/xml.py --- a/lib/galaxy/datatypes/xml.py +++ b/lib/galaxy/datatypes/xml.py @@ -27,9 +27,6 @@ >>> fname = get_test_fname( 'megablast_xml_parser_test1.blastxml' ) >>> GenericXml().sniff( fname ) True - >>> fname = get_test_fname( 'tblastn_four_human_vs_rhodopsin.xml' ) - >>> BlastXml().sniff( fname ) - True >>> fname = get_test_fname( 'interval.interval' ) >>> GenericXml().sniff( fname ) False @@ -50,123 +47,6 @@ data.Text.merge(split_files, output_file) merge = staticmethod(merge) -class BlastXml( GenericXml ): - """NCBI Blast XML Output data""" - file_ext = "blastxml" - - def set_peek( self, dataset, is_multi_byte=False ): - """Set the peek and blurb text""" - if not dataset.dataset.purged: - dataset.peek = data.get_file_peek( dataset.file_name, is_multi_byte=is_multi_byte ) - dataset.blurb = 'NCBI Blast XML data' - else: - dataset.peek = 'file does not exist' - dataset.blurb = 'file purged from disk' - def sniff( self, filename ): - """ - Determines whether the file is blastxml - - >>> fname = get_test_fname( 'megablast_xml_parser_test1.blastxml' ) - >>> BlastXml().sniff( fname ) - True - >>> fname = get_test_fname( 'tblastn_four_human_vs_rhodopsin.xml' ) - >>> BlastXml().sniff( fname ) - True - >>> fname = get_test_fname( 'interval.interval' ) - >>> BlastXml().sniff( fname ) - False - """ - #TODO - Use a context manager on Python 2.5+ to close handle - handle = open(filename) - line = handle.readline() - if line.strip() != '<?xml version="1.0"?>': - handle.close() - return False - line = handle.readline() - if line.strip() not in ['<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">', - '<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "NCBI_BlastOutput.dtd">']: - handle.close() - return False - line = handle.readline() - if line.strip() != '<BlastOutput>': - handle.close() - return False - handle.close() - return True - - def merge(split_files, output_file): - """Merging multiple XML files is non-trivial and must be done in subclasses.""" - if len(split_files) == 1: - #For one file only, use base class method (move/copy) - return data.Text.merge(split_files, output_file) - out = open(output_file, "w") - h = None - for f in split_files: - h = open(f) - body = False - header = h.readline() - if not header: - out.close() - h.close() - raise ValueError("BLAST XML file %s was empty" % f) - if header.strip() != '<?xml version="1.0"?>': - out.write(header) #for diagnosis - out.close() - h.close() - raise ValueError("%s is not an XML file!" % f) - line = h.readline() - header += line - if line.strip() not in ['<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">', - '<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "NCBI_BlastOutput.dtd">']: - out.write(header) #for diagnosis - out.close() - h.close() - raise ValueError("%s is not a BLAST XML file!" % f) - while True: - line = h.readline() - if not line: - out.write(header) #for diagnosis - out.close() - h.close() - raise ValueError("BLAST XML file %s ended prematurely" % f) - header += line - if "<Iteration>" in line: - break - if len(header) > 10000: - #Something has gone wrong, don't load too much into memory! - #Write what we have to the merged file for diagnostics - out.write(header) - out.close() - h.close() - raise ValueError("BLAST XML file %s has too long a header!" % f) - if "<BlastOutput>" not in header: - out.close() - h.close() - raise ValueError("%s is not a BLAST XML file:\n%s\n..." % (f, header)) - if f == split_files[0]: - out.write(header) - old_header = header - elif old_header[:300] != header[:300]: - #Enough to check <BlastOutput_program> and <BlastOutput_version> match - out.close() - h.close() - raise ValueError("BLAST XML headers don't match for %s and %s - have:\n%s\n...\n\nAnd:\n%s\n...\n" \ - % (split_files[0], f, old_header[:300], header[:300])) - else: - out.write(" <Iteration>\n") - for line in h: - if "</BlastOutput_iterations>" in line: - break - #TODO - Increment <Iteration_iter-num> and if required automatic query names - #like <Iteration_query-ID>Query_3</Iteration_query-ID> to be increasing? - out.write(line) - h.close() - out.write(" </BlastOutput_iterations>\n") - out.write("</BlastOutput>\n") - out.close() - merge = staticmethod(merge) - - class MEMEXml( GenericXml ): """MEME XML Output data""" file_ext = "memexml" diff -r 9e9e104ad5c93a2268bb00cfae09b57a31ece13c -r eef07ff2b5b5498fa300f96cefe44f86d8c0e751 lib/galaxy/tool_shed/migrate/versions/0004_tools.py --- /dev/null +++ b/lib/galaxy/tool_shed/migrate/versions/0004_tools.py @@ -0,0 +1,12 @@ +""" +The NCBI BLAST+ tools have been eliminated from the distribution. The tools and datatypes are are now available in repositories named ncbi_blast_plus +and blast_datatypes, respectively, from the main Galaxy tool shed at http://toolshed.g2.bx.psu.edu will be installed into your local Galaxy instance +at the location discussed above by running the following command. +""" + +import sys + +def upgrade(): + print __doc__ +def downgrade(): + pass diff -r 9e9e104ad5c93a2268bb00cfae09b57a31ece13c -r eef07ff2b5b5498fa300f96cefe44f86d8c0e751 scripts/migrate_tools/0004_tools.sh --- /dev/null +++ b/scripts/migrate_tools/0004_tools.sh @@ -0,0 +1,4 @@ +#!/bin/sh + +cd `dirname $0`/../.. +python ./scripts/migrate_tools/migrate_tools.py 0004_tools.xml $@ diff -r 9e9e104ad5c93a2268bb00cfae09b57a31ece13c -r eef07ff2b5b5498fa300f96cefe44f86d8c0e751 scripts/migrate_tools/0004_tools.xml --- /dev/null +++ b/scripts/migrate_tools/0004_tools.xml @@ -0,0 +1,12 @@ +<?xml version="1.0"?> +<toolshed name="toolshed.g2.bx.psu.edu"> + <repository name="blast_datatypes" description="Datatypes for BLAST" changeset_revision="e1c29f302301" /> + <repository name="ncbi_blast_plus" description="Galaxy wrappers for NCBI BLAST+" changeset_revision="d375502056f1"> + <tool id="blastxml_to_tabular" version="0.0.8" file="blastxml_to_tabular.xml"/> + <tool id="ncbi_blastn_wrapper" version="0.0.11" file="ncbi_blastn_wrapper.xml"/> + <tool id="ncbi_blastp_wrapper" version="0.0.11" file="ncbi_blastp_wrapper.xml"/> + <tool id="ncbi_blastx_wrapper" version="0.0.11" file="ncbi_blastx_wrapper.xml"/> + <tool id="ncbi_tblastn_wrapper" version="0.0.11" file="ncbi_tblastn_wrapper.xml"/> + <tool id="ncbi_tblastx_wrapper" version="0.0.11" file="ncbi_tblastx_wrapper.xml"/> + </repository> +</toolshed> https://bitbucket.org/galaxy/galaxy-central/changeset/030f3f7d0fde/ changeset: 030f3f7d0fde user: dannon date: 2012-08-21 16:52:33 summary: Merge. affected #: 14 files diff -r eef07ff2b5b5498fa300f96cefe44f86d8c0e751 -r 030f3f7d0fdeee1d1052d40fb6ef64f76c395fe7 lib/galaxy/datatypes/converters/bedgraph_to_bigwig_converter.xml --- /dev/null +++ b/lib/galaxy/datatypes/converters/bedgraph_to_bigwig_converter.xml @@ -0,0 +1,14 @@ +<tool id="CONVERTER_bedgraph_to_bigwig" name="Convert BedGraph to BigWig" hidden="true"> +  + <command>grep -v "^track" $input | wigToBigWig -clip stdin $chromInfo $output</command> + <inputs> + <page> + <param format="bedgraph" name="input" type="data" label="Choose wiggle"/> + </page> + </inputs> + <outputs> + <data format="bigwig" name="output"/> + </outputs> + <help> + </help> +</tool> \ No newline at end of file diff -r eef07ff2b5b5498fa300f96cefe44f86d8c0e751 -r 030f3f7d0fdeee1d1052d40fb6ef64f76c395fe7 lib/galaxy/datatypes/converters/gff_to_fli.py --- a/lib/galaxy/datatypes/converters/gff_to_fli.py +++ b/lib/galaxy/datatypes/converters/gff_to_fli.py @@ -6,48 +6,52 @@ from galaxy import eggs from galaxy.datatypes.util.gff_util import read_unordered_gtf, convert_gff_coords_to_bed -# Process arguments. -in_fname = sys.argv[1] -out_fname = sys.argv[2] +def main(): + # Process arguments. + in_fname = sys.argv[1] + out_fname = sys.argv[2] + + # Create dict of name-location pairings. + name_loc_dict = {} + for feature in read_unordered_gtf( open( in_fname, 'r' ) ): + for name in feature.attributes: + val = feature.attributes[ name ] + try: + float( val ) + continue + except: + convert_gff_coords_to_bed( feature ) + # Value is not a number, so it can be indexed. + if val not in name_loc_dict: + # Value is not in dictionary. + name_loc_dict[ val ] = { + 'contig': feature.chrom, + 'start': feature.start, + 'end': feature.end + } + else: + # Value already in dictionary, so update dictionary. + loc = name_loc_dict[ val ] + if feature.start < loc[ 'start' ]: + loc[ 'start' ] = feature.start + if feature.end > loc[ 'end' ]: + loc[ 'end' ] = feature.end + + # Print name, loc in sorted order. + out = open( out_fname, 'w' ) + max_len = 0 + entries = [] + for name in sorted( name_loc_dict.iterkeys() ): + loc = name_loc_dict[ name ] + entry = '%s\t%s' % ( name, '%s:%i-%i' % ( loc[ 'contig' ], loc[ 'start' ], loc[ 'end' ] ) ) + if len( entry ) > max_len: + max_len = len( entry ) + entries.append( entry ) + + out.write( str( max_len + 1 ).ljust( max_len ) + '\n' ) + for entry in entries: + out.write( entry.ljust( max_len ) + '\n' ) + out.close() -# Create dict of name-location pairings. -name_loc_dict = {} -for feature in read_unordered_gtf( open( in_fname, 'r' ) ): - for name in feature.attributes: - val = feature.attributes[ name ] - try: - float( val ) - continue - except: - convert_gff_coords_to_bed( feature ) - # Value is not a number, so it can be indexed. - if val not in name_loc_dict: - # Value is not in dictionary. - name_loc_dict[ val ] = { - 'contig': feature.chrom, - 'start': feature.start, - 'end': feature.end - } - else: - # Value already in dictionary, so update dictionary. - loc = name_loc_dict[ val ] - if feature.start < loc[ 'start' ]: - loc[ 'start' ] = feature.start - if feature.end > loc[ 'end' ]: - loc[ 'end' ] = feature.end - -# Print name, loc in sorted order. -out = open( out_fname, 'w' ) -max_len = 0 -entries = [] -for name in sorted( name_loc_dict.iterkeys() ): - loc = name_loc_dict[ name ] - entry = '%s\t%s' % ( name, '%s:%i-%i' % ( loc[ 'contig' ], loc[ 'start' ], loc[ 'end' ] ) ) - if len( entry ) > max_len: - max_len = len( entry ) - entries.append( entry ) - -out.write( str( max_len + 1 ).ljust( max_len ) + '\n' ) -for entry in entries: - out.write( entry.ljust( max_len ) + '\n' ) -out.close() \ No newline at end of file +if __name__ == '__main__': + main() \ No newline at end of file diff -r eef07ff2b5b5498fa300f96cefe44f86d8c0e751 -r 030f3f7d0fdeee1d1052d40fb6ef64f76c395fe7 lib/galaxy/datatypes/converters/wig_to_bigwig_converter.xml --- a/lib/galaxy/datatypes/converters/wig_to_bigwig_converter.xml +++ b/lib/galaxy/datatypes/converters/wig_to_bigwig_converter.xml @@ -1,6 +1,6 @@ <tool id="CONVERTER_wig_to_bigwig" name="Convert Wiggle to BigWig" hidden="true"> - <command>wigToBigWig $input $chromInfo $output</command> + <command>grep -v "^track" $input | wigToBigWig -clip stdin $chromInfo $output</command><inputs><page><param format="wig" name="input" type="data" label="Choose wiggle"/> diff -r eef07ff2b5b5498fa300f96cefe44f86d8c0e751 -r 030f3f7d0fdeee1d1052d40fb6ef64f76c395fe7 lib/galaxy/datatypes/interval.py --- a/lib/galaxy/datatypes/interval.py +++ b/lib/galaxy/datatypes/interval.py @@ -338,7 +338,7 @@ file_ext = "bedgraph" def get_track_type( self ): - return "LineTrack", {"data": "array_tree"} + return "LineTrack", { "data": "bigwig", "index": "bigwig" } def as_ucsc_display_file( self, dataset, **kwd ): """ @@ -1141,8 +1141,9 @@ resolution = min( resolution, 100000 ) resolution = max( resolution, 1 ) return resolution + def get_track_type( self ): - return "LineTrack", {"data": "bigwig", "index": "bigwig"} + return "LineTrack", { "data": "bigwig", "index": "bigwig" } class CustomTrack ( Tabular ): """UCSC CustomTrack""" diff -r eef07ff2b5b5498fa300f96cefe44f86d8c0e751 -r 030f3f7d0fdeee1d1052d40fb6ef64f76c395fe7 lib/galaxy/datatypes/tabular.py --- a/lib/galaxy/datatypes/tabular.py +++ b/lib/galaxy/datatypes/tabular.py @@ -264,10 +264,10 @@ def display_data(self, trans, dataset, preview=False, filename=None, to_ext=None, chunk=None): #TODO Prevent failure when displaying extremely long > 50kb lines. + if chunk: + return self.get_chunk(trans, dataset, chunk) if to_ext or not preview: return self._serve_raw(trans, dataset, to_ext) - if chunk: - return self.get_chunk(trans, dataset, chunk) else: column_names = 'null' if dataset.metadata.column_names: @@ -644,4 +644,5 @@ """ file_ext='fli' MetadataElement( name="columns", default=2, desc="Number of columns", readonly=True, visible=False ) - MetadataElement( name="column_types", default=['str', 'str'], param=metadata.ColumnTypesParameter, desc="Column types", readonly=True, visible=False, no_value=[] ) \ No newline at end of file + MetadataElement( name="column_types", default=['str', 'str'], param=metadata.ColumnTypesParameter, desc="Column types", readonly=True, visible=False, no_value=[] ) + diff -r eef07ff2b5b5498fa300f96cefe44f86d8c0e751 -r 030f3f7d0fdeee1d1052d40fb6ef64f76c395fe7 lib/galaxy/jobs/__init__.py --- a/lib/galaxy/jobs/__init__.py +++ b/lib/galaxy/jobs/__init__.py @@ -490,7 +490,6 @@ if stderr contains anything, then False is returned. Note that the job id is just for messages. """ - err_msg = "" # By default, the tool succeeded. This covers the case where the code # has a bug but the tool was ok, and it lets a workflow continue. success = True @@ -507,7 +506,7 @@ # Check the exit code ranges in the order in which # they were specified. Each exit_code is a StdioExitCode # that includes an applicable range. If the exit code was in - # that range, then apply the error level and add in a message. + # that range, then apply the error level and add a message. # If we've reached a fatal error rule, then stop. max_error_level = galaxy.tools.StdioErrorLevel.NO_ERROR for stdio_exit_code in self.tool.stdio_exit_codes: @@ -515,20 +514,16 @@ tool_exit_code <= stdio_exit_code.range_end ): # Tack on a generic description of the code # plus a specific code description. For example, - # this might append "Job 42: Warning: Out of Memory\n". - # TODO: Find somewhere to stick the err_msg - - # possibly to the source (stderr/stdout), possibly - # in a new db column. + # this might prepend "Job 42: Warning: Out of Memory\n". code_desc = stdio_exit_code.desc if ( None == code_desc ): code_desc = "" - tool_msg = ( "Job %s: %s: Exit code %d: %s" % ( - job.get_id_tag(), - galaxy.tools.StdioErrorLevel.desc( tool_exit_code ), + tool_msg = ( "%s: Exit code %d: %s" % ( + galaxy.tools.StdioErrorLevel.desc( stdio_exit_code.error_level ), tool_exit_code, code_desc ) ) - log.info( tool_msg ) - stderr = err_msg + stderr + log.info( "Job %s: %s" % (job.get_id_tag(), tool_msg) ) + stderr = tool_msg + "\n" + stderr max_error_level = max( max_error_level, stdio_exit_code.error_level ) if ( max_error_level >= @@ -571,7 +566,6 @@ re.IGNORECASE ) if ( regex_match ): rexmsg = self.regex_err_msg( regex_match, regex) - # DELETEME log.info( "Job %s: %s" % ( job.get_id_tag(), rexmsg ) ) stderr = rexmsg + "\n" + stderr diff -r eef07ff2b5b5498fa300f96cefe44f86d8c0e751 -r 030f3f7d0fdeee1d1052d40fb6ef64f76c395fe7 lib/galaxy/tools/__init__.py --- a/lib/galaxy/tools/__init__.py +++ b/lib/galaxy/tools/__init__.py @@ -2631,7 +2631,7 @@ if for_link: # Create tool link. if not self.tool_type.startswith( 'data_source' ): - link = url_for( controller='tool_runner', tool_id=self.id ) + link = url_for( '/tool_runner', tool_id=self.id ) else: link = url_for( self.action, **self.get_static_param_values( trans ) ) diff -r eef07ff2b5b5498fa300f96cefe44f86d8c0e751 -r 030f3f7d0fdeee1d1052d40fb6ef64f76c395fe7 lib/galaxy/visualization/tracks/data_providers.py --- a/lib/galaxy/visualization/tracks/data_providers.py +++ b/lib/galaxy/visualization/tracks/data_providers.py @@ -968,29 +968,32 @@ # which we use converted_dataset f, bbi = self._get_dataset() - # If the stats kwarg was provide, we compute overall summary data for the - # range defined by start and end but no reduced data. This is currently - # used by client to determine the default range. + # If stats requested, compute overall summary data for the range + # start:endbut no reduced data. This is currently used by client + # to determine the default range. if 'stats' in kwargs: summary = bbi.summarize( chrom, start, end, 1 ) f.close() - if summary is None: - return None - else: + + min = 0 + max = 0 + mean = 0 + sd = 0 + if summary is not None: # Does the summary contain any defined values? valid_count = summary.valid_count[0] - if summary.valid_count < 1: - return None + if summary.valid_count > 0: + # Compute $\mu \pm 2\sigma$ to provide an estimate for upper and lower + # bounds that contain ~95% of the data. + mean = summary.sum_data[0] / valid_count + var = summary.sum_squares[0] - mean + if valid_count > 1: + var /= valid_count - 1 + sd = numpy.sqrt( var ) + min = summary.min_val[0] + max = summary.max_val[0] - # Compute $\mu \pm 2\sigma$ to provide an estimate for upper and lower - # bounds that contain ~95% of the data. - mean = summary.sum_data[0] / valid_count - var = summary.sum_squares[0] - mean - if valid_count > 1: - var /= valid_count - 1 - sd = numpy.sqrt( var ) - - return dict( data=dict( min=summary.min_val[0], max=summary.max_val[0], mean=mean, sd=sd ) ) + return dict( data=dict( min=min, max=max, mean=mean, sd=sd ) ) # Sample from region using approximately this many samples. N = 1000 diff -r eef07ff2b5b5498fa300f96cefe44f86d8c0e751 -r 030f3f7d0fdeee1d1052d40fb6ef64f76c395fe7 lib/galaxy/web/controllers/tracks.py --- a/lib/galaxy/web/controllers/tracks.py +++ b/lib/galaxy/web/controllers/tracks.py @@ -387,7 +387,21 @@ return return_message extra_info = None - if 'index' in data_sources and data_sources['index']['name'] == "summary_tree" and kwargs.get("mode", "Auto") == "Auto": + mode = kwargs.get( "mode", "Auto" ) + # Handle histogram mode uniquely for now: + if mode == "Coverage": + # Get summary using minimal cutoffs. + tracks_dataset_type = data_sources['index']['name'] + converted_dataset = dataset.get_converted_dataset( trans, tracks_dataset_type ) + indexer = get_data_provider( tracks_dataset_type )( converted_dataset, dataset ) + summary = indexer.get_data( chrom, low, high, resolution=kwargs[ 'resolution' ], detail_cutoff=0, draw_cutoff=0 ) + if summary == "detail": + # Use maximum level of detail--2--to get summary data no matter the resolution. + summary = indexer.get_data( chrom, low, high, resolution=kwargs[ 'resolution' ], level=2, detail_cutoff=0, draw_cutoff=0 ) + frequencies, max_v, avg_v, delta = summary + return { 'dataset_type': tracks_dataset_type, 'data': frequencies, 'max': max_v, 'avg': avg_v, 'delta': delta } + + if 'index' in data_sources and data_sources['index']['name'] == "summary_tree" and mode == "Auto": # Only check for summary_tree if it's Auto mode (which is the default) # # Have to choose between indexer and data provider diff -r eef07ff2b5b5498fa300f96cefe44f86d8c0e751 -r 030f3f7d0fdeee1d1052d40fb6ef64f76c395fe7 static/scripts/viz/trackster.js --- a/static/scripts/viz/trackster.js +++ b/static/scripts/viz/trackster.js @@ -4433,7 +4433,7 @@ // initialization code. // var track = this; - this.display_modes = ["Auto", "Histogram", "Dense", "Squish", "Pack"]; + this.display_modes = ["Auto", "Coverage", "Dense", "Squish", "Pack"]; // // Initialization. @@ -4516,8 +4516,8 @@ var track = this, i; - // If mode is Histogram and tiles do not share max, redraw tiles as necessary using new max. - if (track.mode === "Histogram") { + // If mode is Coverage and tiles do not share max, redraw tiles as necessary using new max. + if (track.mode === "Coverage") { // Get global max. var global_max = -1; for (i = 0; i < tiles.length; i++) { @@ -4534,7 +4534,7 @@ track.draw_helper(true, width, tile.index, tile.resolution, tile.html_elt.parent(), w_scale, { more_tile_data: { max: global_max } } ); } } - } + } // // Update filter attributes, UI. @@ -4650,86 +4650,6 @@ return slotter.slot_features( features ); }, /** - * Given feature data, returns summary tree data. Feature data must be sorted by start - * position. Return value is a dict with keys 'data', 'delta' (bin size) and 'max.' Data - * is a two-item list; first item is bin start, second is bin's count. - */ - get_summary_tree_data: function(data, low, high, num_bins) { - if (num_bins > high - low) { - num_bins = high - low; - } - var bin_size = Math.floor((high - low)/num_bins), - bins = [], - max_count = 0; - - /* - // For debugging: - for (var i = 0; i < data.length; i++) - console.log("\t", data[i][1], data[i][2], data[i][3]); - */ - - // - // Loop through bins, counting data for each interval. - // - var data_index_start = 0, - data_index = 0, - data_interval, - bin_index = 0, - bin_interval = [], - cur_bin; - - // Set bin interval. - var set_bin_interval = function(interval, low, bin_index, bin_size) { - interval[0] = low + bin_index * bin_size; - interval[1] = low + (bin_index + 1) * bin_size; - }; - - // Loop through bins, data to compute bin counts. Only compute bin counts as long - // as there is data. - while (bin_index < num_bins && data_index_start !== data.length) { - // Find next bin that has data. - var bin_has_data = false; - for (; bin_index < num_bins && !bin_has_data; bin_index++) { - set_bin_interval(bin_interval, low, bin_index, bin_size); - // Loop through data and break if data found that goes in bin. - for (data_index = data_index_start; data_index < data.length; data_index++) { - data_interval = data[data_index].slice(1, 3); - if (is_overlap(data_interval, bin_interval)) { - bin_has_data = true; - break; - } - } - // Break from bin loop if this bin has data. - if (bin_has_data) { - break; - } - } - - // Set start index to current data, which is the first to overlap with this bin - // and perhaps with later bins. - data_start_index = data_index; - - // Count intervals that overlap with bin. - bins[bins.length] = cur_bin = [bin_interval[0], 0]; - for (; data_index < data.length; data_index++) { - data_interval = data[data_index].slice(1, 3); - if (is_overlap(data_interval, bin_interval)) { - cur_bin[1]++; - } - else { break; } - } - - // Update max count. - if (cur_bin[1] > max_count) { - max_count = cur_bin[1]; - } - - // Go to next bin. - bin_index++; - } - return {max: max_count, delta: bin_size, data: bins}; - }, - /** * Returns appropriate display mode based on data. */ get_mode: function(data) { @@ -4766,8 +4686,7 @@ * number of pixels required. */ get_canvas_height: function(result, mode, w_scale, canvas_width) { - if (mode === "summary_tree" || mode === "Histogram") { - // Extra padding at top of summary tree so label does not overlap data. + if (mode === "summary_tree" || mode === "Coverage") { return this.summary_draw_height; } else { @@ -4796,16 +4715,8 @@ tile_high = region.get('end'), left_offset = this.left_offset; - // Drawing the summary tree (feature coverage histogram) - if (mode === "summary_tree" || mode === "Histogram") { - // Get summary tree data if necessary and set max if there is one. - if (result.dataset_type !== "summary_tree") { - var st_data = this.get_summary_tree_data(result.data, tile_low, tile_high, 200); - if (result.max) { - st_data.max = result.max; - } - result = st_data; - } + // Drawing the summary tree. + if (mode === "summary_tree" || mode === "Coverage") { // Paint summary tree into canvas var painter = new painters.SummaryTreePainter(result, tile_low, tile_high, this.prefs); painter.draw(ctx, canvas.width, canvas.height, w_scale); @@ -4872,7 +4783,11 @@ if (mode === "Auto") { return true; } - // All other modes--Histogram, Dense, Squish, Pack--require data + details. + // Histogram mode requires summary_tree data. + else if (mode === "Coverage") { + return data.dataset_type === "summary_tree"; + } + // All other modes--Dense, Squish, Pack--require data + details. else if (data.extra_info === "no_detail" || data.dataset_type === "summary_tree") { return false; } diff -r eef07ff2b5b5498fa300f96cefe44f86d8c0e751 -r 030f3f7d0fdeee1d1052d40fb6ef64f76c395fe7 templates/root/history.mako --- a/templates/root/history.mako +++ b/templates/root/history.mako @@ -250,7 +250,6 @@ }, "View in saved visualization": function() { // Show new modal with saved visualizations. - parent.hide_modal(); parent.show_modal("Add Data to Saved Visualization", table_html, { "Cancel": function() { parent.hide_modal(); diff -r eef07ff2b5b5498fa300f96cefe44f86d8c0e751 -r 030f3f7d0fdeee1d1052d40fb6ef64f76c395fe7 test-data/bwa_wrapper_out3.sam --- a/test-data/bwa_wrapper_out3.sam +++ b/test-data/bwa_wrapper_out3.sam @@ -1,63 +1,63 @@ +@SQ SN:phiX174 LN:5386 +@RG ID:abcdefg LB:lib-mom-A PL:ILLUMINA SM:mom DS:descrip DT:2010-11-01 PI:400 @PG ID:bwa PN:bwa VN:0.5.9-r16 -@RG ID:abcdefg DS:descrip DT:2010-11-01 LB:lib-mom-A PI:400 PL:ILLUMINA SM:mom -@SQ SN:phiX174 LN:5386 -seq1 113 phiX174 340 37 18M = 322 -18 GGATTACTATCTGAGTCC II9(.+5$IIIIIII#II RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq1 177 phiX174 322 25 18M = 340 18 GATATTTTAAAGGAGCGT B&&I13A$G$*%$IIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:2C8A6 -seq10 129 phiX174 4168 37 18M = 4149 -19 AGGGCGTTGAGTTCGATA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq10 65 phiX174 4149 25 18M = 4168 19 ATTCTTTCTTTTCGTATC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:5G11G0 -seq11 129 phiX174 4091 37 18M = 4072 -19 ATCCCCAATGCTTGGCTT IIIII$%*$G$A31I&&B RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq11 65 phiX174 4072 37 18M = 4091 19 GCATTTCTACTCCTTCTC II#IIIIIII$5+.(9II RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:12T5 -seq12 129 phiX174 5365 25 18M = 5349 -16 GGATTGGCGTTTCCAACC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:0T9A7 -seq12 65 phiX174 5349 37 18M = 5365 16 CGCGCTTCGATAAAAATG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq13 129 phiX174 4093 25 18M = 4074 -19 CCCCAATCCTTGCCTTCC IIIAAIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:7G4G5 -seq13 65 phiX174 4074 37 18M = 4093 19 ATTTCTACTCTTTCTCAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:17A0 -seq14 129 phiX174 4016 37 3M1D15M = 3998 -18 TGATATTTTGACTTTGAG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:1 XG:i:1 MD:Z:3^T15 -seq14 65 phiX174 3998 37 18M = 4016 18 CCCTTTTGAATGTCACGC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:5C12 -seq15 129 phiX174 5216 37 5M2I11M = 5198 -18 TTACGAAACGCGACGCCG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:1 XG:i:2 MD:Z:16 -seq15 65 phiX174 5198 37 18M = 5216 18 CCAACTTACCAAGGTGGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:13C4 -seq16 129 phiX174 2897 37 18M = 2880 -17 TTATTTTTCTCCAGCCAC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:6G11 -seq16 65 phiX174 2880 37 10M1I7M = 2897 17 TCAGGGTATTAAAAGAGA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:1 XG:i:1 MD:Z:5T11 -seq17 129 phiX174 3053 25 18M = 3034 -19 AAACAATACTTTAGGCAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:0T9G7 -seq17 65 phiX174 3034 37 18M = 3053 19 GTGATGTGCTTGCTACCG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq1 113 phiX174 340 37 18M = 322 -18 GGATTACTATCTGAGTCC II9(.+5$IIIIIII#II RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq1 177 phiX174 322 25 18M = 340 18 GATATTTTAAAGGAGCGT B&&I13A$G$*%$IIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:2C8A6 +seq2 65 phiX174 141 37 18M = 159 18 ATTCGACCTATCCTTGCG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq2 129 phiX174 159 37 18M = 141 -18 CAGCTCGAGAAGCTCTTA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq3 65 phiX174 505 37 18M = 523 18 GTAACAAAGTTTGGATTG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq3 129 phiX174 523 37 18M = 505 -18 CTACTGACCGCTCTCGTG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq4 69 phiX174 945 0 * = 945 0 AGCCGCTCGTCTTTTATG IIIIIIIIIIIIIIIIII RG:Z:abcdefg +seq4 137 phiX174 945 23 18M = 945 0 TAGGTGGTCAACCATTTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:12A5 XA:Z:phiX174,+945,17M1S,2; +seq5 65 phiX174 4985 37 18M = 5003 18 CAGTTATATGGCTTTTGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:13G4 +seq5 129 phiX174 5003 37 18M = 4985 -18 TTTCTATGTGGCTTAATA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:13A4 +seq6 65 phiX174 925 37 11M1D7M = 944 19 AGGCGCTCGTCTTGGTAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:1 XG:i:1 MD:Z:11^T7 +seq6 129 phiX174 944 37 18M = 925 -19 GTAGGTGGTCAACAATTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq7 65 phiX174 943 25 18M = 960 17 TGTAGGTGGTCAACCAAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:14A1T1 XA:Z:phiX174,+943,13M1I4M,2; +seq7 129 phiX174 960 37 18M = 943 -17 TTTAATTGCAGGGGCTTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq8 69 phiX174 1715 0 * = 1715 0 ACACCCGTCCTTTACGTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg +seq8 137 phiX174 1715 37 18M = 1715 0 ATGCGCTCTATTCTCTGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:10A7 +seq9 65 phiX174 2596 37 18M = 2613 17 GCCGCTATTCAGGTTGTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:7A10 +seq9 129 phiX174 2613 37 18M = 2596 -17 TTCTGTTGGTGCTGATAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq10 65 phiX174 4149 25 18M = 4168 19 ATTCTTTCTTTTCGTATC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:5G11G0 +seq10 129 phiX174 4168 37 18M = 4149 -19 AGGGCGTTGAGTTCGATA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq11 65 phiX174 4072 37 18M = 4091 19 GCATTTCTACTCCTTCTC II#IIIIIII$5+.(9II RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:12T5 +seq11 129 phiX174 4091 37 18M = 4072 -19 ATCCCCAATGCTTGGCTT IIIII$%*$G$A31I&&B RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq12 65 phiX174 5349 37 18M = 5365 16 CGCGCTTCGATAAAAATG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq12 129 phiX174 5365 25 18M = 5349 -16 GGATTGGCGTTTCCAACC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:0T9A7 +seq13 65 phiX174 4074 37 18M = 4093 19 ATTTCTACTCTTTCTCAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:17A0 +seq13 129 phiX174 4093 25 18M = 4074 -19 CCCCAATCCTTGCCTTCC IIIAAIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:7G4G5 +seq14 65 phiX174 3998 37 18M = 4016 18 CCCTTTTGAATGTCACGC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:5C12 +seq14 129 phiX174 4016 37 3M1D15M = 3998 -18 TGATATTTTGACTTTGAG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:1 XG:i:1 MD:Z:3^T15 +seq15 65 phiX174 5198 37 18M = 5216 18 CCAACTTACCAAGGTGGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:13C4 +seq15 129 phiX174 5216 37 5M2I11M = 5198 -18 TTACGAAACGCGACGCCG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:1 XG:i:2 MD:Z:16 +seq16 65 phiX174 2880 37 10M1I7M = 2897 17 TCAGGGTATTAAAAGAGA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:5T11 +seq16 129 phiX174 2897 37 18M = 2880 -17 TTATTTTTCTCCAGCCAC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6G11 +seq17 65 phiX174 3034 37 18M = 3053 19 GTGATGTGCTTGCTACCG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq17 129 phiX174 3053 25 18M = 3034 -19 AAACAATACTTTAGGCAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:0T9G7 +seq18 73 phiX174 4088 37 18M = 4088 0 TCAATCCCCCATGCTTGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:9A8 seq18 133 phiX174 4088 0 * = 4088 0 CCGTTCCATAAGCAGATG IIIIIIIIIIIIIIIIII RG:Z:abcdefg -seq18 73 phiX174 4088 37 18M = 4088 0 TCAATCCCCCATGCTTGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:9A8 -seq19 129 phiX174 3324 37 18M = 3304 -20 GAGCGTCCTGGTGCTGAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:6G11 -seq19 65 phiX174 3304 37 18M = 3324 20 TTCCTGCGCTTAATGCTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:6A11 -seq2 129 phiX174 159 37 18M = 141 -18 CAGCTCGAGAAGCTCTTA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq2 65 phiX174 141 37 18M = 159 18 ATTCGACCTATCCTTGCG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq20 129 phiX174 1100 37 18M = 1082 -18 ACTCCGGTTATCGCTGGC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq20 65 phiX174 1082 37 18M = 1100 18 CTTATTACCATTTCAACT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq21 129 phiX174 1363 37 18M = 1344 -19 TAAGCATTTGGTTCAGGG IIIII$%*$G$A31I&&B RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:10T7 -seq21 65 phiX174 1344 37 18M = 1363 19 CTGATACCAATAAAACCC II#IIIIIII$5+.(9II RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:15T2 -seq22 137 phiX174 5215 37 18M = 5215 0 GTTACGACGCGACGCCGT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq19 65 phiX174 3304 37 18M = 3324 20 TTCCTGCGCTTAATGCTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6A11 +seq19 129 phiX174 3324 37 18M = 3304 -20 GAGCGTCCTGGTGCTGAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6G11 +seq20 65 phiX174 1082 37 18M = 1100 18 CTTATTACCATTTCAACT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq20 129 phiX174 1100 37 18M = 1082 -18 ACTCCGGTTATCGCTGGC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq21 65 phiX174 1344 23 18M = 1363 19 CTGATACCAATAAAACCC II#IIIIIII$5+.(9II RG:Z:abcdefg XT:A:U NM:i:1 SM:i:23 AM:i:23 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:15T2 XA:Z:phiX174,+1344,15M1D3M,2; +seq21 129 phiX174 1363 37 18M = 1344 -19 TAAGCATTTGGTTCAGGG IIIII$%*$G$A31I&&B RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:10T7 seq22 69 phiX174 5215 0 * = 5215 0 AATCAAACTTACCAAGGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg -seq23 129 phiX174 4308 25 18M = 4289 -19 TTTAATAACCCTATAGAC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:0A8A8 -seq23 65 phiX174 4289 37 18M = 4308 19 TGTGCTTCCCCAACTTGA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:6C11 -seq24 129 phiX174 4101 37 18M = 4084 -17 CTTGGCTTCCCTAAGCAG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:10A7 -seq24 65 phiX174 4084 37 18M = 4101 17 TTTCTCAATCCCCAATGC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq25 129 phiX174 537 37 18M = 520 -17 CGTGCTCGTTGCTGCGTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:9C8 -seq25 65 phiX174 520 37 18M = 537 17 TTGCTACTGACCGCTCTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:17C0 -seq26 129 phiX174 1994 37 18M = 1976 -18 AAGGATGTTTTCCGTTCT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq26 65 phiX174 1976 37 18M = 1994 18 CCGCGTGAAATTTCTATG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq27 129 phiX174 2614 37 3M1D15M = 2598 -16 TGTTTGGTGCTGATATTG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:1 XG:i:1 MD:Z:1C1^G15 -seq27 65 phiX174 2598 37 18M = 2614 16 CGCTAATCAAGTTGTTTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:9G8 -seq28 129 phiX174 2906 37 18M = 2890 -16 TCCAGCCACTAAAGTGAG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:10T7 -seq28 65 phiX174 2890 25 18M = 2906 16 AAAGAGATTATTTGTCGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:16T0C0 +seq22 137 phiX174 5215 37 18M = 5215 0 GTTACGACGCGACGCCGT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq23 65 phiX174 4289 37 18M = 4308 19 TGTGCTTCCCCAACTTGA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6C11 +seq23 129 phiX174 4308 25 18M = 4289 -19 TTTAATAACCCTATAGAC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:0A8A8 +seq24 65 phiX174 4084 37 18M = 4101 17 TTTCTCAATCCCCAATGC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq24 129 phiX174 4101 37 18M = 4084 -17 CTTGGCTTCCCTAAGCAG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:10A7 +seq25 65 phiX174 520 37 18M = 537 17 TTGCTACTGACCGCTCTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:17C0 +seq25 129 phiX174 537 37 18M = 520 -17 CGTGCTCGTTGCTGCGTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:9C8 +seq26 65 phiX174 1976 37 18M = 1994 18 CCGCGTGAAATTTCTATG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq26 129 phiX174 1994 37 18M = 1976 -18 AAGGATGTTTTCCGTTCT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq27 65 phiX174 2598 37 18M = 2614 16 CGCTAATCAAGTTGTTTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:9G8 +seq27 129 phiX174 2614 37 3M1D15M = 2598 -16 TGTTTGGTGCTGATATTG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:1 XG:i:1 MD:Z:1C1^G15 +seq28 65 phiX174 2890 25 18M = 2906 16 AAAGAGATTATTTGTCGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:16T0C0 +seq28 129 phiX174 2906 37 18M = 2890 -16 TCCAGCCACTAAAGTGAG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:10T7 +seq29 73 phiX174 5339 37 18M = 5339 0 CAAATTAATGCGCGCTTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6T11 seq29 133 phiX174 5339 0 * = 5339 0 GATAATGATTGGGGTATC IIIIIIIIIIIIIIIIII RG:Z:abcdefg -seq29 73 phiX174 5339 37 18M = 5339 0 CAAATTAATGCGCGCTTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:6T11 -seq3 129 phiX174 523 37 18M = 505 -18 CTACTGACCGCTCTCGTG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq3 65 phiX174 505 37 18M = 523 18 GTAACAAAGTTTGGATTG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq30 129 phiX174 4108 37 18M = 4091 -17 ACCATAAGCAGATGGATA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:0T17 -seq30 65 phiX174 4091 37 18M = 4108 17 ATCCCCTATGCTTGGCTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:6A11 -seq4 137 phiX174 945 37 18M = 945 0 TAGGTGGTCAACCATTTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:12A5 -seq4 69 phiX174 945 0 * = 945 0 AGCCGCTCGTCTTTTATG IIIIIIIIIIIIIIIIII RG:Z:abcdefg -seq5 129 phiX174 5003 37 18M = 4985 -18 TTTCTATGTGGCTTAATA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:13A4 -seq5 65 phiX174 4985 37 18M = 5003 18 CAGTTATATGGCTTTTGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:13G4 -seq6 129 phiX174 944 37 18M = 925 -19 GTAGGTGGTCAACAATTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq6 65 phiX174 925 37 11M1D7M = 944 19 AGGCGCTCGTCTTGGTAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:1 XG:i:1 MD:Z:11^T7 -seq7 129 phiX174 960 37 18M = 943 -17 TTTAATTGCAGGGGCTTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq7 65 phiX174 943 25 18M = 960 17 TGTAGGTGGTCAACCAAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:14A1T1 -seq8 137 phiX174 1715 37 18M = 1715 0 ATGCGCTCTATTCTCTGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:10A7 -seq8 69 phiX174 1715 0 * = 1715 0 ACACCCGTCCTTTACGTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg -seq9 129 phiX174 2613 37 18M = 2596 -17 TTCTGTTGGTGCTGATAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq9 65 phiX174 2596 37 18M = 2613 17 GCCGCTATTCAGGTTGTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:7A10 +seq30 65 phiX174 4091 37 18M = 4108 17 ATCCCCTATGCTTGGCTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6A11 +seq30 129 phiX174 4108 37 18M = 4091 -17 ACCATAAGCAGATGGATA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:0T17 diff -r eef07ff2b5b5498fa300f96cefe44f86d8c0e751 -r 030f3f7d0fdeee1d1052d40fb6ef64f76c395fe7 test-data/bwa_wrapper_out6.sam --- a/test-data/bwa_wrapper_out6.sam +++ b/test-data/bwa_wrapper_out6.sam @@ -1,49 +1,46 @@ -427_1253_1057_F3 0 chrX_part 14947 37 49M * 0 0 TTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTTTTCATGTGTCT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]VZ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 -427_1299_965_F3 16 chrX_part 13217 25 49M * 0 0 GGGATGCTCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAGTTCTG ][]]]]Y]]]]Z]]]]]]]]]Z]]]]Y]]]]]]]]Y]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:7C41 -427_12_1018_F3 4 * 0 0 * * 0 0 CTCTTCTCCTCCGGACTAGAGGCCCGGGCAATCAAGGCTGCGTAGACGTA >?<;5@:>>5>7:?<7@><=:>?92<?5>=;@@>?2<?>:?<9<4>56?@ RG:Z:474747 +@SQ SN:chrX_part LN:37500 +@RG ID:474747 LB:lib-child-1-A PL:SOLID SM:child-1 DS:description DT:2011-03-14 PI:200 +@PG ID:bwa PN:bwa VN:0.5.9-r16 427_12_390_F3 4 * 0 0 * * 0 0 AAGGGAGTGGTGCTGGTGGGAGGCAATTTGTCGGACCTGGGAAGCGAGTC BBB>=;@@A6<A;=>=A?>??@A58@B>9>>@?70?@<=>>@A9/5?=25 RG:Z:474747 427_12_550_F3 4 * 0 0 * * 0 0 CGATCTCTGCAACTTCGTGCGCAGGCGATGGGGGGGAAAATGAACGGATA 8A=?<BA@=;?A;?><B?;:5@.<:7?9;6<A62<@;8<==@3:>;=339 RG:Z:474747 427_12_941_F3 4 * 0 0 * * 0 0 GGGCCAAAGTAAACGCTAATCGAGGAGGACAAAGTAAGGAAGGCGCCTGT B@72=>?A:;<:?>?94B??;3A<?1@<3=<A?8>A6?>=>7A/>=07<@ RG:Z:474747 +427_12_1018_F3 4 * 0 0 * * 0 0 CTCTTCTCCTCCGGACTAGAGGCCCGGGCAATCAAGGCTGCGTAGACGTA >?<;5@:>>5>7:?<7@><=:>?92<?5>=;@@>?2<?>:?<9<4>56?@ RG:Z:474747 427_13_422_F3 4 * 0 0 * * 0 0 AATAACGAAGCGTGTGTGTTAGCGGGAGAGCCGGGCCCCTTCCCGTACGT 9>A2,9@9<8<=;;7=7:>@1<:?37<1>1690>7=<:=A/>53.::<=/ RG:Z:474747 427_13_494_F3 4 * 0 0 * * 0 0 CGACTACCCCTACCGGTCACCGCTACGGTGAGGCTAAGCTCTTCCAGACG .>>?@;A@?7?@<>39?>=7:==76;=;=65@:::9?8?3=@8=::@2<. RG:Z:474747 427_13_606_F3 4 * 0 0 * * 0 0 TTTAACGCGATAATCCTTCGAAGGAAAAGAAGTGACTTTCCGTACATACC BB?A?@A??>B@A@<=@A==A>>>>AA@7<?:B=9<@A@A@2@>8><;<= RG:Z:474747 427_13_861_F3 4 * 0 0 * * 0 0 CGAGGTGCAGGCCTGCTCTGGGGACCCACTGTGACCAGGCGGCCTGCCAC =>>@<@>BB>>58A=@A<BABA:=>@B:==?A9<AA@7::@;??:A?;2> RG:Z:474747 427_13_961_F3 4 * 0 0 * * 0 0 GACGGGAGACGCTGCGATCGCACCTTAATGGGGGACCGGATGCACAAAAG @BBBBB@BB@B>BBAB@B@AB@ABAABBA?B?B@>@@BA=A?A:<>BBB3 RG:Z:474747 -427_1444_687_F3 16 chrX_part 25682 37 49M * 0 0 TCATTCTCAGCAAACTATCGCAAGGACAAAAAACCAAACACCGCATGTT ]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -427_14_1010_F3 4 * 0 0 * * 0 0 GCTGCTGTGGCCGGGCGCACCCAGACAGGTAGAAAGCCGACTCACCACGT @??A><@=ABA@?A?A@A??AB@AA@=<?B;<@?A<94?A=5;:@@2?@9 RG:Z:474747 427_14_270_F3 4 * 0 0 * * 0 0 GCAGATGCGTGGAGCAACGGTGGTCTGTAGATCGTCAGGATCTGAAACCA A=A@?BB>@9@BAA89>A@:A@@>2@A;383B><;:;>=1=8B:<>=?8= RG:Z:474747 427_14_376_F3 4 * 0 0 * * 0 0 TCACACGCAGGGCCCCGTACGGAGAATACTGCTCAATGAAAATGGAGGGG B9??@BA@;?BB@@>AA?:?>A><=<A:4=5<?;=<?;?:95=61;<:<2 RG:Z:474747 427_14_602_F3 4 * 0 0 * * 0 0 GGCCGGTTGGTCGACTAGGCAGGCCGACAATGCCTGAACATACTAGGGCC ,B=7==A:9;AA45,=:9/.2<;58>9806:=>:<8=877?=9198>:2: RG:Z:474747 427_14_665_F3 4 * 0 0 * * 0 0 CATACGAGGGAGTCTCTAGCATAAAGCTGGGTCCCCTGACATTGACCTGA <A@@>B7<A5@>@>>>;<@68,9@;<-<<:>9?@?>6.A65=;=8569;5 RG:Z:474747 -427_1522_8_F3 0 chrX_part 12254 0 49M * 0 0 ACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCAC )]]]]]]]]]]]]]PU]]][]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 XM:i:3 XO:i:0 XG:i:0 MD:Z:34C14 XA:Z:chrX_part,+26921,49M,3; +427_14_1010_F3 4 * 0 0 * * 0 0 GCTGCTGTGGCCGGGCGCACCCAGACAGGTAGAAAGCCGACTCACCACGT @??A><@=ABA@?A?A@A??AB@AA@=<?B;<@?A<94?A=5;:@@2?@9 RG:Z:474747 +427_15_423_F3 4 * 0 0 * * 0 0 GCTGGAGGAGAAAGGGGGGACCCGCAATCGAGCGTCCGATAATGAAATGG >/B@=<A=??@B>A>B@@>9?@=A6@B@9?5@6A7A@>@A?=?A/@@A?= RG:Z:474747 +427_15_646_F3 4 * 0 0 * * 0 0 CAGTTCGCTTGGTCAATCAATATAGAGAACCTGGGGAGTAGTGTCCGGAG ?@=?>=A?@??B876:@65.B<914;;<06=?914:67997;5<:/7771 RG:Z:474747 +427_15_872_F3 4 * 0 0 * * 0 0 CGGGTAGACTTTAGTACCTAGACGAAGGGAGTGACATGACGTCGCGTACA <:??A@B@B==>@>A:6=?;5<::30<==63@;;1?=;A5,=7<,4;6@0 RG:Z:474747 427_15_1039_F3 4 * 0 0 * * 0 0 AGAGTCAACTGAAGCTTCCGAGTCGTGAACGGGGGGAGGAGAGGGAAGGC BBB@@@B?A?ABB><A>?9=:=<:@:?>51:AA>?87>?979<>><>>=< RG:Z:474747 427_15_1070_F3 4 * 0 0 * * 0 0 CTACTCCCTGCATTAGATACTGGAGCTCGGCTAGAGGGATGGCGTTAAAG =>A<@><?BAA?A?>?4??=;>?@>??=:@<6?98==><<:;<8A:7=@5 RG:Z:474747 427_15_1081_F3 4 * 0 0 * * 0 0 GCTCCTCCACGATTAATCGTTGGGGTGCAATGAGAAAACAGCCAATGGCC @=AAAB@?@>?B@?=BB@?@B=@>;B@3:?BA39?>@7==<<<A?A<1A? RG:Z:474747 -427_15_423_F3 4 * 0 0 * * 0 0 GCTGGAGGAGAAAGGGGGGACCCGCAATCGAGCGTCCGATAATGAAATGG >/B@=<A=??@B>A>B@@>9?@=A6@B@9?5@6A7A@>@A?=?A/@@A?= RG:Z:474747 -427_15_646_F3 4 * 0 0 * * 0 0 CAGTTCGCTTGGTCAATCAATATAGAGAACCTGGGGAGTAGTGTCCGGAG ?@=?>=A?@??B876:@65.B<914;;<06=?914:67997;5<:/7771 RG:Z:474747 -427_15_872_F3 4 * 0 0 * * 0 0 CGGGTAGACTTTAGTACCTAGACGAAGGGAGTGACATGACGTCGCGTACA <:??A@B@B==>@>A:6=?;5<::30<==63@;;1?=;A5,=7<,4;6@0 RG:Z:474747 -427_16_1107_F3 4 * 0 0 * * 0 0 TGTGTAAGTGAGACACGAGAAGCAAGAACTGATGCCCTGCAGGGTTTAGG <+>B><:;A@B?:>>:A7B5;B@?B>8;:>8=B:B@=;@25A9A=>@1A: RG:Z:474747 427_16_264_F3 4 * 0 0 * * 0 0 CCCGATCCTAGGCAGAATCGAGAGAGACCACAACCCGCGAAAACCATTGC @<>?@@?AA?@??@>>?;:A>>A=?>=?>?:A>@@@:A8@@@:>/@>A4= RG:Z:474747 427_16_565_F3 4 * 0 0 * * 0 0 AGCTATGGAATACCAAGACATCCAAGGAACTACTGCCGAAGGTTCCGGAG BB1AABB9@@B>3>=@@,?AB<8A>@@9<=BA8<<>>4A??@:??<?6@< RG:Z:474747 -427_17_1027_F3 4 * 0 0 * * 0 0 CAGTGCAATGGGAGTAAAGCAAATTCGGCAGCCCGTGGCCGAACCGCTTG A@@BAB=>B>BAA?5>=AA8:@B@;=@?@9:>BB::?@A54=B?<0<B@: RG:Z:474747 +427_16_1107_F3 4 * 0 0 * * 0 0 TGTGTAAGTGAGACACGAGAAGCAAGAACTGATGCCCTGCAGGGTTTAGG <+>B><:;A@B?:>>:A7B5;B@?B>8;:>8=B:B@=;@25A9A=>@1A: RG:Z:474747 +427_17_46_F3 4 * 0 0 * * 0 0 CCAATGAATGAAACAGGGTACCCGCGAGCGCCTGCTGAGCTGACAGTCTC :.>A:@>@?7A@<=2?;6?;>;99=<:8;95>0:><14;@4:><:,;:8? RG:Z:474747 427_17_342_F3 4 * 0 0 * * 0 0 AGCTGGAGCTGCTGCCACGGACAAGGTCGGAGCTGAGGCTGGCTGGACTA BA?A?BB>>ABB@;;AA@@>AA>=ABB1??:B6>?>B72>@B49>?@3<< RG:Z:474747 427_17_446_F3 4 * 0 0 * * 0 0 TATGCCGTGAGACGGGGGGAAACAGACCCTACCCCGATGTATAAGGCCGG =B?>8>BA?=>B;?;>A;:<=?937;?=2;6:==;9=@3?9;51;9:149 RG:Z:474747 -427_17_46_F3 4 * 0 0 * * 0 0 CCAATGAATGAAACAGGGTACCCGCGAGCGCCTGCTGAGCTGACAGTCTC :.>A:@>@?7A@<=2?;6?;>;99=<:8;95>0:><14;@4:><:,;:8? RG:Z:474747 427_17_917_F3 4 * 0 0 * * 0 0 AAGACTACGCGTTAGGCCAAGAGAAAGACTCAAGAGACGACCTCTAAGAT @@=???A6=-;A:3<@?866@94:20<11@3;19:=:/:9<<45B@:48B RG:Z:474747 -427_1891_897_F3 16 chrX_part 26846 37 49M * 0 0 GGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATC ]]]]]]]]]]]]]]]QW]]]Z]]]]]]]]]PX]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +427_17_1027_F3 4 * 0 0 * * 0 0 CAGTGCAATGGGAGTAAAGCAAATTCGGCAGCCCGTGGCCGAACCGCTTG A@@BAB=>B>BAA?5>=AA8:@B@;=@?@9:>BB::?@A54=B?<0<B@: RG:Z:474747 427_18_267_F3 4 * 0 0 * * 0 0 CTGGCACCGAACGGAGGAAGAAATTGCGTAGATTACAGTAATCAGAAGAC AB@A;>@A@>AAAB:8B<>>@B@A=@?=@;=A<A3>?;@@?<:>+A?;A. RG:Z:474747 427_18_481_F3 4 * 0 0 * * 0 0 GGCTCGCCCCAGTATCGACGTCGTATGAGAGATGACGAGGCCCGGGCGAG AB>?;B@A>=AAA@@@A?=6B=><=B=<8>=7A2=<==5;@5>7<=3=>; RG:Z:474747 427_18_706_F3 4 * 0 0 * * 0 0 CTCTATATGGAAGGTTACTACTCAGTAACCTTAGGGACCAAGAACCGGTT >AAA@B?BAABAAAAA@@@A?B?>=B?@>>B@6??@><@@?:?A;<?=?? RG:Z:474747 427_18_834_F3 4 * 0 0 * * 0 0 GGGACCCGACCTAGGACGGACAAAGACAGGGACGACAGATATACGATTCA @@@@><?A><@A?@7@A@@6=><?;<;;7@>=?=:<:<;>=6=/:A?B?4 RG:Z:474747 427_18_846_F3 4 * 0 0 * * 0 0 GGACGCGTCACCAGAAAAACTAGGGGACGGTCCACGACCATGACGGGGAG BABB>BBBB7BBA@@ABBB1<BABA<B<A89BB?21A@@22@@A?>A@=? RG:Z:474747 -427_1927_689_F3 0 chrX_part 26924 0 49M * 0 0 AGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATC ]]ZY]]]Z[]]]ZROQFMVZ]ZYUV]ZXSLTWZUT]]]]]]Z\[ZXW[T RG:Z:474747 XT:A:R CM:i:1 X0:i:3 XM:i:2 XO:i:0 XG:i:0 MD:Z:34T14 XA:Z:chrX_part,+14818,49M,2;chrX_part,+12257,49M,2; -427_19_1049_F3 4 * 0 0 * * 0 0 TCCGCTTGGAACATACTAAAGGAGAGTATATAGATGACCAGGAAAAGCTT ?<>@:A?@B>B=>@@?>AA?B>@@@BB35@B>98<>A5/AB><<BB>8<: RG:Z:474747 427_19_11_F3 4 * 0 0 * * 0 0 CAGCCCACATGCACCCACTGGGAAGGCCACCCATGAGAAACTCCACGATC =1:<4>?><;=?><1?:>?7>=>=:<=<99:><<55;>>,@=>93>/15: RG:Z:474747 427_19_137_F3 4 * 0 0 * * 0 0 AAGCTGACGCTACCACGGACAACAGCGGTCAAGGCCGTCAGGCGAAGCGG ?78;?@?<>;=AA=;7?9<8;=<:<8><968;<9;:<:;::<53;=7+85 RG:Z:474747 427_19_296_F3 4 * 0 0 * * 0 0 CCAGAAACCTCAGCAACACACCACCTAGGCCCCCAGGGTCGGAAGATGCA B@BABBB@BBBBAA@<AAAB>@A@?AA@?@>A=?9>?>?@@@?@=?A<@@ RG:Z:474747 427_19_324_F3 4 * 0 0 * * 0 0 TGGACGATTTAATGGCAGGGAAGTGAGACAAGACTGGGGTCTGCGAAAAA A;=?3A>>:>>:<87:8483>>627=;40596=885:66>3810/843:9 RG:Z:474747 427_19_533_F3 4 * 0 0 * * 0 0 GAAAGCTCGATCGTTCGACTTTTCTTCGTCTGAGTCAATCAGACTTGGCA BA@@?>@A?>A@@@@?@<=BAB?>BA?<>3B?<;@?AB?7><@@@AA6?- RG:Z:474747 427_19_899_F3 4 * 0 0 * * 0 0 CATACCGTAGCCCAGGCAAGGAGACGCTCAGTGTAACAAGACGCAGTCGA @??B>=@<A?;@5AA8=6@B<:3A>6=57@9A2?A=;:A?4>,9A7=48@ RG:Z:474747 +427_19_1049_F3 4 * 0 0 * * 0 0 TCCGCTTGGAACATACTAAAGGAGAGTATATAGATGACCAGGAAAAGCTT ?<>@:A?@B>B=>@@?>AA?B>@@@BB35@B>98<>A5/AB><<BB>8<: RG:Z:474747 427_20_363_F3 4 * 0 0 * * 0 0 GACGTCGAGATACGGTACCCGGGCTATATTTTAGACGACTTAAAACTAGA AAAA>@B>A+BB@A7B@?<==?>=@.@9?=>A=<<1><>>>=@@?74?.@ RG:Z:474747 427_20_407_F3 4 * 0 0 * * 0 0 ATAACGGACACCTAAGAAGAGGGAGTTAACATCCAGCGTAGGGCGCGTAC BBBB?BBB?ABBBBABB@>BBB?@?AB?@@2B?@;@94B@AB??;/?@>= RG:Z:474747 427_20_608_F3 4 * 0 0 * * 0 0 ACAGCACGCGGCTGCAGGAGGGAGAGAGGGGCAAGACGGACGGGCCTGTG B@9<AB?35>@>9?=AB7:@@A6<@A=>=A@@=<=?@<;:=<-<@:=0=: RG:Z:474747 @@ -64,38 +61,34 @@ 427_23_874_F3 4 * 0 0 * * 0 0 GGAGAACTCTAAGAAAGAACTTTAAACCAGTCTTGCCCCCCGATCGTGAA <@ABBBAB=AABAAA@@BA<>A@@B?A??=A@B@@@B<BBB<=<@:>?>: RG:Z:474747 427_23_986_F3 4 * 0 0 * * 0 0 CGGTCTGTTTTGCGGGACACGAGGTCGTGAACTAGACTGCGGGTGCATCG @6=??@<<><>@A@:<=<;==>@;3=>8=;>::?8@?9=99=4:6@<67; RG:Z:474747 427_23_993_F3 4 * 0 0 * * 0 0 AGACTCCGGGACAATGAGTCCAGCAGAGGGTGATGAAGGAACGAACGGAA @>BAAA?BBB@?B@BA@ABAB?B?A@A?AAB@<AA?>@=AA<ABB@:@AA RG:Z:474747 -427_24_1040_F3 4 * 0 0 * * 0 0 CCATTTTCCCAGTGAGCACCCTTGCTTCCAATCAGGGGACTGGCTCAGAA 45/2<9A@A93A7<5:;@6=<A:7=:B5740@<698=3<:8:8-:5,220 RG:Z:474747 427_24_476_F3 4 * 0 0 * * 0 0 CAGCAGGTCCAAACGTGGATCCGCGGGCGGAGAAGGCGACACAGGGCAAA =B>:>>A<<76===6=?;3=;<<45<=6,876968:-256;693464<<< RG:Z:474747 427_24_880_F3 4 * 0 0 * * 0 0 CGTAGGTAGGCCAGGCGAGGTATTCTATCTGGGCGCAATTACCAGGAACA AAA+AB@?;@AA?;?ABA>AB>B:=BAA+@=A>4?>A?=@4?;2>9A=1? RG:Z:474747 427_24_952_F3 4 * 0 0 * * 0 0 GGTTTTTCCTTGTTCATGTGTAATCCAGTATGGAGGGCCAAAGAGAGTCC @?B>@9?@-16=9<54:-<53=6>:2;.41/<176,>8137;5:.9=905 RG:Z:474747 +427_24_1040_F3 4 * 0 0 * * 0 0 CCATTTTCCCAGTGAGCACCCTTGCTTCCAATCAGGGGACTGGCTCAGAA 45/2<9A@A93A7<5:;@6=<A:7=:B5740@<698=3<:8:8-:5,220 RG:Z:474747 +427_25_60_F3 4 * 0 0 * * 0 0 TGAGGTATGGGAGTCGTAGGCGCACTCGAGGCGCCTGAGGAAACACCCTC A/>>=?==>:>>8?:>=.=>9>84:@:96<7>6<=<93<<5;>:8==.1< RG:Z:474747 427_25_234_F3 4 * 0 0 * * 0 0 TATCAAGCAACGGGTGTATGGGGGAAGAGAAAGGCGATCCCACCAGATCA 0>@</1A7<+8A64::>4<9<@88=9>94<8@:7<9=>;?8:;195:<5> RG:Z:474747 -427_25_60_F3 4 * 0 0 * * 0 0 TGAGGTATGGGAGTCGTAGGCGCACTCGAGGCGCCTGAGGAAACACCCTC A/>>=?==>:>>8?:>=.=>9>84:@:96<7>6<=<93<<5;>:8==.1< RG:Z:474747 427_25_854_F3 4 * 0 0 * * 0 0 AGCACTCGCGTAGACAATCGACAGCCCTGACCGAGCGAATAAGGGCTGAA AA@BBB?AB=B@@@>=;B;@4?B9?=@B;@6A?9=<:A@A6:73@55>2> RG:Z:474747 427_26_256_F3 4 * 0 0 * * 0 0 GAGGGCCGGGGGGCGATCGAAGAGTCTCGAGACGAGGCCGTGTCTCGGAA BB=BAA@@BABB?7A2>-@@@>@?AAB=@8@?9><@>:7>@>:7@@45+8 RG:Z:474747 427_26_331_F3 4 * 0 0 * * 0 0 TCGCTCGCGCTAAGATACAAGGAAGCTCAACTTTTAGCGCGCATAGGCTG =73:><A;=9?<>;/A;;:<=?276:<19;;A<7<<9<3:9:-.<<>.74 RG:Z:474747 427_26_583_F3 4 * 0 0 * * 0 0 CACGCGTTATGGAGCTCGGCGAGGGGACTAGGAGCAGAGTCTGCTTAGAT AAA@ABBBB?@B@?=B;>AA?=?@A@>7A@AA>>@==@?A=B==BB7:AA RG:Z:474747 427_26_646_F3 4 * 0 0 * * 0 0 AGAAACTCTGAGCCGGACCAAAATTAGGAGATCAAGAACCCCGGGAGGCC @@AAA?A>??BB@@A?;A@=BB??:AA7=8AB:><=<==@B;:9:A:>?5 RG:Z:474747 427_26_857_F3 4 * 0 0 * * 0 0 TTAGCCGTCCGCTGTATCAATCCAGTGTAGTCGTCGTAAACGTAACGTAC >A?=>@@<><=<=><@?7<9@><?:@;@8:@@;6<8>>A9=1/A??5:@. RG:Z:474747 -427_27_1002_F3 4 * 0 0 * * 0 0 GATGCCGATAATTACACACCCCCAAGTGCGAAGGCAAAGGATGGCTTCCC >?<>B<A<=?<B;;9@A9>?@A:A=<A5<3=B:;:AA==0A>3<37A>=5 RG:Z:474747 427_27_160_F3 4 * 0 0 * * 0 0 TTAAACGTATTCTAGTACCTAAAGGAAGCTGGGCTCACAACGTTTAAAAG >>AA@@-@A?A<>A;@647A=<>9=?;:7@8;3>@2:5@<:7@?A99:?4 RG:Z:474747 427_27_231_F3 4 * 0 0 * * 0 0 GGCGGGCAAGGGCTGGGGATGGAGACGACTACTTTCCAAAGTCGGCATGC ABAA?AB=>>@B>@?@@6;B@A5;@@@=8=>;:<A?@.?;<@;8=>9<5< RG:Z:474747 427_27_369_F3 4 * 0 0 * * 0 0 CAATGCCCCTGAAATGGACGTACGCCTAACCGGAGCCGGCTGGGCTACGC ;3:7?@=34?A<3/@A?14<A8;4>7=31<98.0:<<54<77659?4.8< RG:Z:474747 427_27_778_F3 4 * 0 0 * * 0 0 GCAAATGCCGAAGAAACAGAGAGAGGGCACGGCAGGACACCACCTAGACG AA:=6AB=;=>?;=:@>6=;>>:8=@@=;7A@><?A@?=<???;@?===7 RG:Z:474747 427_27_939_F3 4 * 0 0 * * 0 0 AAGGAGGGACACAAAACCCCGGCTAATCAGAGAGCAAGGGGAGTCGTCGA 2:53=@:<@9:<?@??28>@<5:A<@>;02=6867A=<<@58->;:72/2 RG:Z:474747 -427_28_1127_F3 4 * 0 0 * * 0 0 GTCCGGGACCTCTTACCCAACACAAAGGCCGAGACCCGTTGCAACTGGCG ??BBBB?@BAB@BABA@?BBA>@BBAA=?>BB>?@A=:?@9@BA@78?B- RG:Z:474747 +427_27_1002_F3 4 * 0 0 * * 0 0 GATGCCGATAATTACACACCCCCAAGTGCGAAGGCAAAGGATGGCTTCCC >?<>B<A<=?<B;;9@A9>?@A:A=<A5<3=B:;:AA==0A>3<37A>=5 RG:Z:474747 427_28_593_F3 4 * 0 0 * * 0 0 TGGCAGAATATTACCATCTAGAGAGAAAAGAGGGTTAGACGCAGGCTAGA 4B;?>@@==;A@=;;A?-;?@@:=?BB95><@<4AA<;>:?97<>@?<89 RG:Z:474747 427_28_739_F3 4 * 0 0 * * 0 0 CAGCTCCCCGCGAAGCTCTCATTACCTCGGGGTGACTACTAAACGTTGAG 6B=@AA<;=3:B?@65@8@>5A:=>@A859<>99>4A</?:;?596A348 RG:Z:474747 427_28_798_F3 4 * 0 0 * * 0 0 TACGTAAACCACCTCGCCCGCACTCCAAAACCGAGACCTTCCCACATCAG B@@@@???<36?8:::<=?6-;89<;;:4994<.;5>A5:43>+>0+<11 RG:Z:474747 427_28_923_F3 4 * 0 0 * * 0 0 CAGCCTTGATCCTACGCTGCGCTGCCGCGAGCGTGGACGATGCTCGAGCC ?B=A?B@>A8BB@>>@>B;6>>AA;A8=:2@:::8?8>66A4?<:?4?;; RG:Z:474747 -427_292_217_F3 0 chrX_part 14846 37 49M * 0 0 GTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTTTCCTGACTT ]]]]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +427_28_1127_F3 4 * 0 0 * * 0 0 GTCCGGGACCTCTTACCCAACACAAAGGCCGAGACCCGTTGCAACTGGCG ??BBBB?@BAB@BABA@?BBA>@BBAA=?>BB>?@A=:?@9@BA@78?B- RG:Z:474747 +427_29_95_F3 4 * 0 0 * * 0 0 AGACGAAGTGGTGATGGGTGTAAACGGCCCGGCGTAGAGCACGCTCGAGC ?8?@>A><<:9??5????;;>@@9=<7?8<==>4@-==7;/5>1;4;;24 RG:Z:474747 427_29_521_F3 4 * 0 0 * * 0 0 CTCTGACGTCCCATGAACTTCGCGAAGTCACCCCGGCACAAAACGATTGC >B<@=AA===BB>?<>B:>>@;<6>=?>/;>B?<=3@0;?>><88=;<03 RG:Z:474747 427_29_911_F3 4 * 0 0 * * 0 0 GTCCGCCAGTCCAGACTGGACAATTCGGACAACGGGCTGAGGCTAGGGAC B?BA@BA@B@?AAB=?@ABB=@BBB@B>A<>@@BA<=?BA>?=@B<B<@= RG:Z:474747 -427_29_95_F3 4 * 0 0 * * 0 0 AGACGAAGTGGTGATGGGTGTAAACGGCCCGGCGTAGAGCACGCTCGAGC ?8?@>A><<:9??5????;;>@@9=<7?8<==>4@-==7;/5>1;4;;24 RG:Z:474747 427_29_970_F3 4 * 0 0 * * 0 0 GAGCTCGACGCGGGCGAACAAGTGAATGCCTCGAACAGACAGAGCGGCGA A@78BAB:>=BB9;>BA89BAA88AAB-:=@@4<<A@2:>>>.,9>B-78 RG:Z:474747 427_29_978_F3 4 * 0 0 * * 0 0 ACCCCAAATTTCCGCGCTTACAAACATCTGCGACAAAGATATGGTCCCGG A?@BAB@?B?AA?B?@B@BA>ABB?A?9A@??=7@AB/A?<A?<@@@=@? RG:Z:474747 -427_30_1018_F3 4 * 0 0 * * 0 0 CAGAAAGGCCCCTAAGGCACACACCCGCATGAGGCCAGGCTACCCCAAGC @@@AABB@B?A@;4AAA<;A?A>4AAA98BAA:9A@B=3B;A;:A>A=,B RG:Z:474747 -427_30_1044_F3 4 * 0 0 * * 0 0 CCCTTCGGAGGCGGACCAAGACAGCTAGGGAGGGAGAAAAAAGAAGAAAC ?BA@ABB=;AA><==AB>=@>A@=>=A?=A=A>9A7BABB@A3@A.<76+ RG:Z:474747 -427_30_1053_F3 4 * 0 0 * * 0 0 CGCCGTGCGCTTCTATCGTGGGACGCAAGTTCCGGATGATGACAATACGT <?A=@@ABB>BB@?@;;8A@>@??@>=A<A=9?@?9=9@<.:<BB:9<== RG:Z:474747 427_30_261_F3 4 * 0 0 * * 0 0 AAGAGCGGCGGCCAAGAGGCTGCTATTGAAGCCTTGCCCGTTCACCACCC A?>??A@@>?@@=@<@<??=A?>@>BA<>>>@7>?<??>>=<=<=>:;?@ RG:Z:474747 427_30_606_F3 4 * 0 0 * * 0 0 AGTAGGAACCTTACACACGGGAGGCAATCCCTGGCGTGAGGCTCGAGGGA >?@8=@@:<<@A86;A=88>@?8/-<??699A929>>667<9=59>881: RG:Z:474747 427_30_752_F3 4 * 0 0 * * 0 0 CGGCGGAGGCAGACGCACCATACTGCAACGGAGGAGGGCAAGATGGCGAT @B@=?B?@>=>A.<>>;8;9@@<>;AA:;;??8:3@>:;8<=6=6:0624 RG:Z:474747 @@ -103,101 +96,108 @@ 427_30_773_F3 4 * 0 0 * * 0 0 CGTTGCGCAAGAGAAACCGCAGCTACGGCACCGCCGTATACCTAATCCAA <@BBB=BBB@=?@B?=A@@==@@@@=B??===@>>;>A=7A@@8<8<>>? RG:Z:474747 427_30_959_F3 4 * 0 0 * * 0 0 AGGGAGACATAGCCTGCACTCCCAACCAATTTGCCACGAAATGGTCATAT >=@@?@=?;BA@>9BA=:=BAB=;:AA;9BB?88<==;??=?79;6677@ RG:Z:474747 427_30_983_F3 4 * 0 0 * * 0 0 CGTCTGACTAGGACTGAGAACCTCACCCTGGGCTCTCTAGAGAGGCTCCG >?@B?BA@A=BAB>@BAAB?B@AA=BB?@?B@A@9A:A<7B<B@>B<@@A RG:Z:474747 +427_30_1018_F3 4 * 0 0 * * 0 0 CAGAAAGGCCCCTAAGGCACACACCCGCATGAGGCCAGGCTACCCCAAGC @@@AABB@B?A@;4AAA<;A?A>4AAA98BAA:9A@B=3B;A;:A>A=,B RG:Z:474747 +427_30_1044_F3 4 * 0 0 * * 0 0 CCCTTCGGAGGCGGACCAAGACAGCTAGGGAGGGAGAAAAAAGAAGAAAC ?BA@ABB=;AA><==AB>=@>A@=>=A?=A=A>9A7BABB@A3@A.<76+ RG:Z:474747 +427_30_1053_F3 4 * 0 0 * * 0 0 CGCCGTGCGCTTCTATCGTGGGACGCAAGTTCCGGATGATGACAATACGT <?A=@@ABB>BB@?@;;8A@>@??@>=A<A=9?@?9=9@<.:<BB:9<== RG:Z:474747 427_31_153_F3 4 * 0 0 * * 0 0 GACAAGGAACTGCCAGGCCGGAGCGGAAGACGTACCATCATCAGCGCGGG ?>=>9AA?@;@A?;9@@:;;>>6<;?@9<<<A@8<><=8@A=>1?9>:9= RG:Z:474747 427_31_598_F3 4 * 0 0 * * 0 0 GGCAGGGTCTGGCTAGCATCGGTTAAGGATCTGGGGGAAGAGAATCTACG BBA?AB@?/-ABA=9A:1?9BA@@<8@>0<>?=<>@@=?::AA>@::99= RG:Z:474747 -427_71_906_F3 16 chrX_part 28077 25 49M * 0 0 CTTTGAAGCAATTGCGAATGGGAGTTCACTCATGATTTGGCTCTCTGTT []XNU]\]WO\]]]]]\]YX]]]]]]]]]]]]]]]W]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:14T34 +427_71_906_F3 16 chrX_part 28077 25 49M * 0 0 CTTTGAAGCAATTGCGAATGGGAGTTCACTCATGATTTGGCTCTCTGTT []XNU]\]WO\]]]]]\]YX]]]]]]]]]]]]]]]W]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:14T34 +427_292_217_F3 0 chrX_part 14846 37 49M * 0 0 GTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTTTCCTGACTT ]]]]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 427_794_484_F3 4 * 0 0 * * 0 0 GCTCATACGGACGAGACACCCGTTCCACGATTGAGGCCACCGGGGGGAAT A@BAABBBA=ABBA=@@B?4<BAA4>A@81@B@26>A@+<>=?<;?BB:2 RG:Z:474747 +427_1253_1057_F3 0 chrX_part 14947 37 49M * 0 0 TTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTTTTCATGTGTCT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]VZ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +427_1299_965_F3 16 chrX_part 13217 25 49M * 0 0 GGGATGCTCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAGTTCTG ][]]]]Y]]]]Z]]]]]]]]]Z]]]]Y]]]]]]]]Y]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:7C41 +427_1444_687_F3 16 chrX_part 25682 37 49M * 0 0 TCATTCTCAGCAAACTATCGCAAGGACAAAAAACCAAACACCGCATGTT ]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +427_1522_8_F3 0 chrX_part 12254 0 49M * 0 0 ACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCAC )]]]]]]]]]]]]]PU]]][]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:34C14 XA:Z:chrX_part,+26921,49M,3; +427_1891_897_F3 16 chrX_part 26846 23 49M * 0 0 GGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATC ]]]]]]]]]]]]]]]QW]]]Z]]]]]]]]]PX]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,-14740,49M,3; +427_1927_689_F3 0 chrX_part 26924 0 49M * 0 0 AGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATC ]]ZY]]]Z[]]]ZROQFMVZ]ZYUV]ZXSLTWZUT]]]]]]Z\[ZXW[T RG:Z:474747 XT:A:R CM:i:1 X0:i:3 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:34T14 XA:Z:chrX_part,+14818,49M,2;chrX_part,+12257,49M,2; +428_247_467_F3 4 * 0 0 * * 0 0 CTACCCCGCGCGAGACCCATCACACGACGTGCAATCCGCGAACCACACCG ABAABAAAB@AAAA?>>?AA:?@A:9=>A@4;?B@<>8B>.8?A>1:<@> RG:Z:474747 +428_385_1306_F3 0 chrX_part 27180 37 49M * 0 0 TTTCTTGTAAATTTGTTTAAGTTTCTTGTAGATTCTGGATATTAGCCCT ]]]]]]]]]]]]]]YW]]]][]]]MN]]]]]]]]]]]]]]]]]][]]\Z RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:23C25 +428_435_1382_F3 0 chrX_part 14761 0 49M * 0 0 ATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]]ZJ RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:35C13 XA:Z:chrX_part,+26867,49M,2; +428_589_1697_F3 4 * 0 0 * * 0 0 CGAGTCTAGAAGAACGAAACGCGCCCCAGGCCGAAGTCTAAGGGGGGCCA @1>B6<<;A?@?B></=B@@/>>B???5?:=<=?9:=12><:>>;:<577 RG:Z:474747 +428_615_1095_F3 16 chrX_part 28737 37 49M * 0 0 ATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTC ]]Y]]]WY]]]]]]MX]]]]]]]]S\]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +428_628_321_F3 0 chrX_part 28192 37 49M * 0 0 CTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACAATGGGGT ]]]]]]]]]]]]]]]]]]U]]Z[Y[]]]W\]QO\]\ZYPPVU]XY]\WU RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +428_666_413_F3 0 chrX_part 27425 37 49M * 0 0 CTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAACGTTTAAGTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]][]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:40A8 +428_912_273_F3 4 * 0 0 * * 0 0 TCCACCGCGAAACGGGCCCCGTCCAGAAAGAGAGCCCCGACTCCCCAGGG BAABBBB@@BABA@BB@>??BB@A?@A=@<>@??<ABBA::@A@@@@9>< RG:Z:474747 428_1011_1047_F3 4 * 0 0 * * 0 0 TCGCGCCGCCCTAAAGCCCAGAGTTAAGGGACCCTGAGGGGACGTCCAGC BB?>?BA@<>?B>=?A?>8@AB@A?A@>;=>>??@>A?==@?=6@>7;5> RG:Z:474747 -428_1380_646_F3 16 chrX_part 3496 37 49M * 0 0 ATAAAGAAGGTGGTTTTCAGGTCTATATTCAATGGCTCTGGTGTAATAG ]]]]]]VX][[]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +428_1380_646_F3 16 chrX_part 3496 37 49M * 0 0 ATAAAGAAGGTGGTTTTCAGGTCTATATTCAATGGCTCTGGTGTAATAG ]]]]]]VX][[]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 428_1424_131_F3 4 * 0 0 * * 0 0 CTCTATTAGCCCATTGTCAAGGCGACAGACACACAACAATCCGACACCAT 6B7?@BB>:>AB:@BBA>>8B8;:7><<>=9<6<+>8><<?@9>05<46= RG:Z:474747 -428_1495_1538_F3 0 chrX_part 26855 37 49M * 0 0 GGATCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:2G46 +428_1495_1538_F3 0 chrX_part 26855 37 49M * 0 0 GGATCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:2G46 428_1562_623_F3 4 * 0 0 * * 0 0 CATGTATTTGACGGATGGTCCAAGGACGATAACCAATAATCCAGGAAAAA ;@A@BABA?AA@A<B?@?==@BA=:?@?><?>?5:==A?4:>?32:=@?< RG:Z:474747 -428_1569_464_F3 0 chrX_part 26911 0 49M * 0 0 GAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCT &)]]]]]]\]]]]]]]]]]]]]]]LS]]YS]]]]Z]]]]X\]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 XM:i:3 XO:i:0 XG:i:0 MD:Z:47T1 XA:Z:chrX_part,+12244,49M,3; +428_1569_464_F3 0 chrX_part 26911 0 49M * 0 0 GAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCT &)]]]]]]\]]]]]]]]]]]]]]]LS]]YS]]]]Z]]]]X\]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:47T1 XA:Z:chrX_part,+12244,49M,3; 428_1573_204_F3 4 * 0 0 * * 0 0 ACAAGTCATGTGACGCAATCACTTAAGGTGCAGGTGGTGAAGCGGAGATG B=;=ABA9:AB@;=AA44>5?;==65=2;978?:;19?/@-1=<==3?:= RG:Z:474747 -428_1632_1017_F3 0 chrX_part 14942 37 49M * 0 0 TTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTTTTCATG ]]]]]]]]]]]]]]]]]]Z\]]]YU]]]]]]]]RS]]]]]W]]T[TT]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +428_1632_1017_F3 0 chrX_part 14942 23 49M * 0 0 TTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTTTTCATG ]]]]]]]]]]]]]]]]]]Z\]]]YU]]]]]]]]RS]]]]]W]]T[TT]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+27049,49M,2; 428_1643_455_F3 4 * 0 0 * * 0 0 TAGTCTAGGATTTCCCACACCACCGGCCAACCGGGGGTACAATGCTCGGC A>>A>AA?;BBBAA>B@@?=AA@@<9>>@@??>A?<=<B@=75<A>;:<@ RG:Z:474747 -428_1684_1168_F3 16 chrX_part 27017 37 49M * 0 0 CTAACTGGTGTGAGATGGTATCTCATTGTGGTTTTGATTTGCATTTCTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -428_1691_159_F3 16 chrX_part 14618 37 49M * 0 0 TTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGC ]TO]UY]]]]]]]]]]]]VT]]]]]]]]]]]]]]]]]]]]]]]]]]]+/ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 -428_1816_859_F3 0 chrX_part 14837 37 49M * 0 0 AGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +428_1684_1168_F3 16 chrX_part 27017 37 49M * 0 0 CTAACTGGTGTGAGATGGTATCTCATTGTGGTTTTGATTTGCATTTCTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +428_1691_159_F3 16 chrX_part 14618 37 49M * 0 0 TTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGC ]TO]UY]]]]]]]]]]]]VT]]]]]]]]]]]]]]]]]]]]]]]]]]]+/ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +428_1816_859_F3 0 chrX_part 14837 37 49M * 0 0 AGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 428_1829_1041_F3 4 * 0 0 * * 0 0 AATAGTGTCACATCGCGAAGGAGCCCGGATACAGAAAAACGTCGAATAAG ,??A@9AB>@5AA>A9A?=?:B=?:5A=;>8@;:89A>=92A96<4@>;9 RG:Z:474747 -428_1841_222_F3 16 chrX_part 26855 37 49M * 0 0 GGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATGGCCACACTG ]\Z]]YV]]]]]]]][S[]]]SQ]]]]]]]]\]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:39C9 -428_1971_118_F3 16 chrX_part 27350 25 49M * 0 0 TGGCTTTTGTTGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCC XX]]]]]]][Y]]\]]\]]WX]]]\]]]]\\]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:7G41 -428_1978_162_F3 16 chrX_part 28066 25 49M * 0 0 TATTTTATCCTCTTTGAAGCAATTGTGAATGGGAGTTCACTCATGATTT ]]]]]]]]SS]]]]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:8T40 -428_247_467_F3 4 * 0 0 * * 0 0 CTACCCCGCGCGAGACCCATCACACGACGTGCAATCCGCGAACCACACCG ABAABAAAB@AAAA?>>?AA:?@A:9=>A@4;?B@<>8B>.8?A>1:<@> RG:Z:474747 -428_385_1306_F3 0 chrX_part 27180 37 49M * 0 0 TTTCTTGTAAATTTGTTTAAGTTTCTTGTAGATTCTGGATATTAGCCCT ]]]]]]]]]]]]]]YW]]]][]]]MN]]]]]]]]]]]]]]]]]][]]\Z RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:23C25 -428_435_1382_F3 0 chrX_part 14761 0 49M * 0 0 ATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]]ZJ RG:Z:474747 XT:A:R CM:i:1 X0:i:2 XM:i:2 XO:i:0 XG:i:0 MD:Z:35C13 XA:Z:chrX_part,+26867,49M,2; -428_589_1697_F3 4 * 0 0 * * 0 0 CGAGTCTAGAAGAACGAAACGCGCCCCAGGCCGAAGTCTAAGGGGGGCCA @1>B6<<;A?@?B></=B@@/>>B???5?:=<=?9:=12><:>>;:<577 RG:Z:474747 -428_615_1095_F3 16 chrX_part 28737 37 49M * 0 0 ATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTC ]]Y]]]WY]]]]]]MX]]]]]]]]S\]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -428_628_321_F3 0 chrX_part 28192 37 49M * 0 0 CTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACAATGGGGT ]]]]]]]]]]]]]]]]]]U]]Z[Y[]]]W\]QO\]\ZYPPVU]XY]\WU RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -428_666_413_F3 0 chrX_part 27425 37 49M * 0 0 CTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAACGTTTAAGTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]][]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:40A8 -428_912_273_F3 4 * 0 0 * * 0 0 TCCACCGCGAAACGGGCCCCGTCCAGAAAGAGAGCCCCGACTCCCCAGGG BAABBBB@@BABA@BB@>??BB@A?@A=@<>@??<ABBA::@A@@@@9>< RG:Z:474747 -429_1074_1497_F3 0 chrX_part 26923 0 49M * 0 0 TAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACAT ]]]]]]]]]]]]VV]]]XZ]]]]]]]]]]]]]YZ]]]]]]]]\[]]][Y RG:Z:474747 XT:A:R CM:i:1 X0:i:2 XM:i:3 XO:i:0 XG:i:0 MD:Z:35T13 XA:Z:chrX_part,+12256,49M,3; -429_1244_262_F3 16 chrX_part 27844 37 49M * 0 0 TTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCAT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -429_1264_776_F3 16 chrX_part 27356 37 49M * 0 0 TGGTTGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCC %!X\[]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]* RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +428_1841_222_F3 16 chrX_part 26855 37 49M * 0 0 GGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATGGCCACACTG ]\Z]]YV]]]]]]]][S[]]]SQ]]]]]]]]\]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:39C9 +428_1971_118_F3 16 chrX_part 27350 25 49M * 0 0 TGGCTTTTGTTGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCC XX]]]]]]][Y]]\]]\]]WX]]]\]]]]\\]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:7G41 +428_1978_162_F3 16 chrX_part 28066 25 49M * 0 0 TATTTTATCCTCTTTGAAGCAATTGTGAATGGGAGTTCACTCATGATTT ]]]]]]]]SS]]]]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:8T40 +429_320_1424_F3 4 * 0 0 * * 0 0 ATTGAGCGGGCGAACTGCGAGCACTGATTGCGTGATAGAGGGTAAACAAT BB?9=>B<=><BA<??@=;=:=A5=?@A>==AA48?72:<>>=??@:33= RG:Z:474747 +429_498_1544_F3 0 chrX_part 12236 0 49M * 0 0 GACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:1T47 XA:Z:chrX_part,+26903,49M,2; +429_517_617_F3 0 chrX_part 27136 23 49M * 0 0 CTGTTCATGTCCTTTGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+27136,49M,3; +429_525_1146_F3 16 chrX_part 14836 37 49M * 0 0 CAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGT TTXVUPQYSVYW]]]TT]]]OT]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +429_566_873_F3 16 chrX_part 28192 37 49M * 0 0 CTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACAATGGGGT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +429_627_1289_F3 4 * 0 0 * * 0 0 TTAGCGCCTACTGAAACTGCAGTGTCACATCGCGAAGGAGCCCGGATACA BBBBBBA?BBBB<BBB@@A@B@?=A@>>@AA??>?>B>:=A>===??<<B RG:Z:474747 +429_641_991_F3 0 chrX_part 27721 37 49M * 0 0 ACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]][ RG:Z:474747 XT:A:U CM:i:2 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:35C0A12 +429_706_923_F3 0 chrX_part 14842 37 49M * 0 0 AAAAGTGTTCCTATTTCTCCACCTCCTCTCCAGCACCTGTTGTTTCCTG LY]]]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:22A26 +429_820_1223_F3 16 chrX_part 27415 25 49M * 0 0 ATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAA [VUZ]]]]]]]]]]TT]]]]]U]]RZ]]]]]]]]]Y]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:9T39 +429_880_338_F3 4 * 0 0 * * 0 0 GATGTGAACCCGGAATTCCAACGTCACTGCGGGGATTCGTTTAACCCAGG A@A?BBAA@@?B>A@@A=?B?A8?;=A=>@@A?>?@A8;AAA=A<?<;>= RG:Z:474747 +429_899_643_F3 4 * 0 0 * * 0 0 CACAAAATTCACAAATGACGGTACTCAATAGCGGAATATGACTGGACGAT ?AB@6>?AB<=@AA@>@<A>=B@=>3@?@><A@@=>>?A=>;B8=@@6<< RG:Z:474747 +429_1074_1497_F3 0 chrX_part 26923 0 49M * 0 0 TAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACAT ]]]]]]]]]]]]VV]]]XZ]]]]]]]]]]]]]YZ]]]]]]]]\[]]][Y RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:35T13 XA:Z:chrX_part,+12256,49M,3; +429_1244_262_F3 16 chrX_part 27844 23 49M * 0 0 TTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCAT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+15141,49M,2; +429_1264_776_F3 16 chrX_part 27356 37 49M * 0 0 TGGTTGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCC %!X\[]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]* RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 429_1285_1614_F3 4 * 0 0 * * 0 0 TGTAGTTGCTACCACAGCCTAACAACACACAGACAGCGGAACTGTTACCC A@BB?ABBBBBBBABBBB?AABBA@<BB?A@B>6@=@@;BA@@>@;?B?? RG:Z:474747 429_1292_826_F3 4 * 0 0 * * 0 0 CGGTGAGGCTCCCGTCAAAGGAATATCACTGCGGGCCGACCGATCACAGT >A@A?AA>?BBB>@@;:?3>A?@??7@@;A=?<<<>=;@??<?9?7<A2A RG:Z:474747 -429_1304_326_F3 0 chrX_part 12249 0 49M * 0 0 GTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTC ]]]]]]]]]]]]]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 XM:i:3 XO:i:0 XG:i:0 MD:Z:39C9 XA:Z:chrX_part,+26916,49M,3; -429_1398_1503_F3 0 chrX_part 27821 37 49M * 0 0 TCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCAT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y[]]]\]]]]X\]]\U]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -429_1427_1475_F3 16 chrX_part 27983 25 49M * 0 0 TATCCTCTTTTATTTCATTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAG ]]]TOYT\]]]]]]]]]]]]]X]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:16C32 -429_1568_890_F3 0 chrX_part 13190 25 49M * 0 0 ATTCCCTTTGAAAACTGGCACAAGACAGGGATACCCTCTCTCACCACTC ]]]]]]]]]]]QT]]]PT]]]R]]]]MS]]]]]]]]QT]]]\]]]]QU] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:32G16 -429_1819_792_F3 16 chrX_part 3467 37 49M * 0 0 GTACGAAGAAAACAAAGAGCTCGGTTACCATAAAGAAGGTGGTTTTCAG [UMBRWX]UW]]]]]]]]]]]]]TU]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -429_1854_1258_F3 16 chrX_part 27411 25 49M * 0 0 CTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGT ]]]][[]Z]]]]]]]]]]]]]]]]]Z]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:13T35 -429_1876_126_F3 16 chrX_part 27366 37 49M * 0 0 TGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCCTATGTCCTGA W]Z]]]]\]]]]]]]]]]]]]]]]]]]]]]]][]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -429_1899_322_F3 0 chrX_part 27853 37 49M * 0 0 TCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTAT ]]]]]]]]]]]]]]\]]][Z]]]]Z\]]]]]]\\VZ]]]]]]SW]]]Z\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:48C0 -429_1905_281_F3 16 chrX_part 26882 37 49M * 0 0 TCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTAC ]]]][X]]]]]]]]]]]]]YX]]]X]]]]]]]]]Y]]]]]]]]]]]]]\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:29G19 -429_1921_1124_F3 16 chrX_part 26708 0 49M * 0 0 TTAATCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTG ]]]]]]]]\Y]]]]]]]]]]\]]][]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:0 X0:i:2 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,-14602,49M,1; -429_1925_1090_F3 0 chrX_part 28003 25 49M * 0 0 AGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:45A3 -429_320_1424_F3 4 * 0 0 * * 0 0 ATTGAGCGGGCGAACTGCGAGCACTGATTGCGTGATAGAGGGTAAACAAT BB?9=>B<=><BA<??@=;=:=A5=?@A>==AA48?72:<>>=??@:33= RG:Z:474747 -429_498_1544_F3 0 chrX_part 12236 0 49M * 0 0 GACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 XM:i:2 XO:i:0 XG:i:0 MD:Z:1T47 XA:Z:chrX_part,+26903,49M,2; -429_517_617_F3 0 chrX_part 27136 37 49M * 0 0 CTGTTCATGTCCTTTGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -429_525_1146_F3 16 chrX_part 14836 37 49M * 0 0 CAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGT TTXVUPQYSVYW]]]TT]]]OT]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -429_566_873_F3 16 chrX_part 28192 37 49M * 0 0 CTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACAATGGGGT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -429_627_1289_F3 4 * 0 0 * * 0 0 TTAGCGCCTACTGAAACTGCAGTGTCACATCGCGAAGGAGCCCGGATACA BBBBBBA?BBBB<BBB@@A@B@?=A@>>@AA??>?>B>:=A>===??<<B RG:Z:474747 -429_641_991_F3 0 chrX_part 27721 37 49M * 0 0 ACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]][ RG:Z:474747 XT:A:U CM:i:2 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:35C0A12 -429_706_923_F3 0 chrX_part 14842 37 49M * 0 0 AAAAGTGTTCCTATTTCTCCACCTCCTCTCCAGCACCTGTTGTTTCCTG LY]]]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:22A26 -429_820_1223_F3 16 chrX_part 27415 25 49M * 0 0 ATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAA [VUZ]]]]]]]]]]TT]]]]]U]]RZ]]]]]]]]]Y]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:9T39 -429_880_338_F3 4 * 0 0 * * 0 0 GATGTGAACCCGGAATTCCAACGTCACTGCGGGGATTCGTTTAACCCAGG A@A?BBAA@@?B>A@@A=?B?A8?;=A=>@@A?>?@A8;AAA=A<?<;>= RG:Z:474747 -429_899_643_F3 4 * 0 0 * * 0 0 CACAAAATTCACAAATGACGGTACTCAATAGCGGAATATGACTGGACGAT ?AB@6>?AB<=@AA@>@<A>=B@=>3@?@><A@@=>>?A=>;B8=@@6<< RG:Z:474747 +429_1304_326_F3 0 chrX_part 12249 0 49M * 0 0 GTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTC ]]]]]]]]]]]]]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:39C9 XA:Z:chrX_part,+26916,49M,3; +429_1398_1503_F3 0 chrX_part 27821 23 49M * 0 0 TCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCAT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y[]]]\]]]]X\]]\U]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,-15164,49M,2; +429_1427_1475_F3 16 chrX_part 27983 25 49M * 0 0 TATCCTCTTTTATTTCATTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAG ]]]TOYT\]]]]]]]]]]]]]X]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:16C32 +429_1568_890_F3 0 chrX_part 13190 25 49M * 0 0 ATTCCCTTTGAAAACTGGCACAAGACAGGGATACCCTCTCTCACCACTC ]]]]]]]]]]]QT]]]PT]]]R]]]]MS]]]]]]]]QT]]]\]]]]QU] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:32G16 +429_1819_792_F3 16 chrX_part 3467 37 49M * 0 0 GTACGAAGAAAACAAAGAGCTCGGTTACCATAAAGAAGGTGGTTTTCAG [UMBRWX]UW]]]]]]]]]]]]]TU]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +429_1854_1258_F3 16 chrX_part 27411 25 49M * 0 0 CTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGT ]]]][[]Z]]]]]]]]]]]]]]]]]Z]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:13T35 +429_1876_126_F3 16 chrX_part 27366 37 49M * 0 0 TGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCCTATGTCCTGA W]Z]]]]\]]]]]]]]]]]]]]]]]]]]]]]][]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +429_1899_322_F3 0 chrX_part 27853 37 49M * 0 0 TCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTAT ]]]]]]]]]]]]]]\]]][Z]]]]Z\]]]]]]\\VZ]]]]]]SW]]]Z\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:48C0 +429_1905_281_F3 16 chrX_part 26882 37 49M * 0 0 TCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTAC ]]]][X]]]]]]]]]]]]]YX]]]X]]]]]]]]]Y]]]]]]]]]]]]]\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:29G19 +429_1921_1124_F3 16 chrX_part 26708 0 49M * 0 0 TTAATCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTG ]]]]]]]]\Y]]]]]]]]]]\]]][]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:0 X0:i:2 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,-14602,49M,1; +429_1925_1090_F3 0 chrX_part 28003 25 49M * 0 0 AGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:45A3 +430_78_1025_F3 0 chrX_part 14935 23 49M * 0 0 TTGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]]]]]]]]Z]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+27042,49M,3; +430_89_1672_F3 4 * 0 0 * * 0 0 GGCGGAGATGTTACCCCGCGCGAGACCCATCACACGACGTGCAATCCGCG B?B?9@B@>=A@B=>A>?A@B<@==?=?@;>7A?>53A;>32@BAB>6?; RG:Z:474747 +430_131_637_F3 4 * 0 0 * * 0 0 ACCAGAGTTAAGGGACCCTGATTGGACGTCCAGCCACCAAGAGCGCGAAA 8??<>>@@8B68>?9=A8?=BB<AAA>0@;@<<A<>A9B@>A8=:@=A?; RG:Z:474747 +430_179_99_F3 0 chrX_part 14832 37 49M * 0 0 CCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +430_392_28_F3 0 chrX_part 12248 0 49M * 0 0 GGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTT ]]]]]]]]]]]]]]]]]]]]]]]]][]]]]]]\]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:40C8 XA:Z:chrX_part,+26915,49M,2; +430_491_367_F3 0 chrX_part 27259 37 49M * 0 0 TCCCATTTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]ZX]]]UU][]]]]]ZHR] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +430_607_895_F3 0 chrX_part 26847 23 49M * 0 0 GGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCG *]]]]]]]]]]]]]]]]]\]]]]]]]]ZZ]]]]\]]]]]]]]]Z[]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+14741,49M,2; +430_688_525_F3 16 chrX_part 27375 37 45M1D4M * 0 0 TGTTTTAGACATGAAGTCCTTGCCCATGCCTATGTCCTGAATGGTATGT WW]]]]]Z]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]]]"!] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:45^A4 +430_691_1191_F3 0 chrX_part 26852 0 49M * 0 0 GCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:0 X0:i:2 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+14746,49M,1; +430_693_248_F3 0 chrX_part 14829 37 49M * 0 0 CCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCAC -]]]]]]]]]]]]]]]Z]]]]]]][]]]]]]]]]]]]]]]]]]]]]]]\ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +430_821_1672_F3 4 * 0 0 * * 0 0 ATCGGCTGGCGCCAAGAATGTATTTGACGGATGGTCCATCGACGGCAACC A@?AAAAAA@=?:BA>B@>ABA?@A?B>:=@?<<:@>B=74@B;=><@65 RG:Z:474747 +430_874_1668_F3 4 * 0 0 * * 0 0 GAGAATTAAGGAAGGGAGCTAGCGTACTAAGCATACGGACGAGACACCCG A@AA>A@AB=@BAA@A@>@?B@=@?B@:A@?>:>A>=69@=@8A@@:/9? RG:Z:474747 +430_900_444_F3 0 chrX_part 26504 37 49M * 0 0 GTGATGTTCCCCTTCCTGTGTCCATGTGTTCTCATTGTTCAATTCCCAC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:11T37 430_1055_244_F3 4 * 0 0 * * 0 0 CGATGTTACCCCGCGCGAGACCCATCACACGACGTGCAATCCGCGAACCA ?BBBBBBBBBBBBBABB@BB@=<AB<>>B>9?<AB;:>BB@@<B?>3A@@ RG:Z:474747 430_1080_625_F3 4 * 0 0 * * 0 0 AGAACTAGGCCTGACACTAGCCAGCCGGGCGTCACTGCAAGGAAACTGCC B=BBBBBBBB>BBBB@?BA@B?@AB>A@AA>A7A@B?+@7A>A?<B-=>@ RG:Z:474747 -430_1105_227_F3 16 chrX_part 27741 37 49M * 0 0 TTTGAAGTCAGGTAGCGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGG ]]]]]]]][\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:16A32 +430_1105_227_F3 16 chrX_part 27741 37 49M * 0 0 TTTGAAGTCAGGTAGCGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGG ]]]]]]]][\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:16A32 430_1195_1598_F3 4 * 0 0 * * 0 0 CCTTTTTCAACAAGAGTATTTAATGCTCTGCTGTTTAAGGCCCCTCTCCC @B@BBBBBBABBB@BBBBBBB@AA><6.=>@=5<BA4A5>@8A7B>48:7 RG:Z:474747 -430_1270_1392_F3 0 chrX_part 27268 37 49M * 0 0 GTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGC ]]]]]]]]]]]]]]]]]]]]]]XW]]]SU]]]]]]]]]]]]]QT]]]Q[ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -430_1280_786_F3 0 chrX_part 28246 37 49M * 0 0 AGATATACAATCATGTCATCTGCAAACAGGGACAATTTGACTTCATCTT ]]]]]]]]]]]]]]]]]]]]]]]SX]]]]]]]][]]]\RW]]]SZ]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:44C4 -430_1307_10_F3 0 chrX_part 26911 0 49M * 0 0 GAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCT !"]]]]]]]]]]]]]]]]]]]]]]]]]]ZR]]]]]]]]]X[]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 XM:i:3 XO:i:0 XG:i:0 MD:Z:47T1 XA:Z:chrX_part,+12244,49M,3; -430_131_637_F3 4 * 0 0 * * 0 0 ACCAGAGTTAAGGGACCCTGATTGGACGTCCAGCCACCAAGAGCGCGAAA 8??<>>@@8B68>?9=A8?=BB<AAA>0@;@<<A<>A9B@>A8=:@=A?; RG:Z:474747 -430_1403_722_F3 0 chrX_part 12260 0 49M * 0 0 TTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:3 XM:i:2 XO:i:0 XG:i:0 MD:Z:28C20 XA:Z:chrX_part,+14821,49M,2;chrX_part,+26927,49M,2; -430_1406_34_F3 0 chrX_part 26518 37 49M * 0 0 CCTGTGTCCACGTGTTCTCATTGTTCAATTCCCACCTATGAGTGAGAAC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:10T38 -430_1531_1322_F3 0 chrX_part 26775 25 49M * 0 0 CAATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATAATC ]WP]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:46G2 -430_1586_641_F3 0 chrX_part 28277 25 49M * 0 0 ACAATTTGACTTCCTCTTTTCCTAATTGAATGCCCTTTATTTCCTTCTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:31A17 -430_1684_261_F3 16 chrX_part 27257 25 49M * 0 0 TCTCCCATTCTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGC QS]TU]]]YXVX]XJQX]]]][]YS]]]]\]]]\]]]]\]]]]]]]]], RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:9T39 +430_1270_1392_F3 0 chrX_part 27268 37 49M * 0 0 GTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGC ]]]]]]]]]]]]]]]]]]]]]]XW]]]SU]]]]]]]]]]]]]QT]]]Q[ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +430_1280_786_F3 0 chrX_part 28246 23 49M * 0 0 AGATATACAATCATGTCATCTGCAAACAGGGACAATTTGACTTCATCTT ]]]]]]]]]]]]]]]]]]]]]]]SX]]]]]]]][]]]\RW]]]SZ]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:44C4 XA:Z:chrX_part,+28246,49M,3; +430_1307_10_F3 0 chrX_part 26911 0 49M * 0 0 GAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCT !"]]]]]]]]]]]]]]]]]]]]]]]]]]ZR]]]]]]]]]X[]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:47T1 XA:Z:chrX_part,+12244,49M,3; +430_1403_722_F3 0 chrX_part 12260 0 49M * 0 0 TTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:3 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:28C20 XA:Z:chrX_part,+14821,49M,2;chrX_part,+26927,49M,2; +430_1406_34_F3 0 chrX_part 26518 37 49M * 0 0 CCTGTGTCCACGTGTTCTCATTGTTCAATTCCCACCTATGAGTGAGAAC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:10T38 +430_1531_1322_F3 0 chrX_part 26775 25 49M * 0 0 CAATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATAATC ]WP]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:46G2 +430_1586_641_F3 0 chrX_part 28277 25 49M * 0 0 ACAATTTGACTTCCTCTTTTCCTAATTGAATGCCCTTTATTTCCTTCTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:31A17 +430_1684_261_F3 16 chrX_part 27257 25 49M * 0 0 TCTCCCATTCTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGC QS]TU]]]YXVX]XJQX]]]][]YS]]]]\]]]\]]]]\]]]]]]]]], RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:9T39 430_1726_1548_F3 4 * 0 0 * * 0 0 TTTTCGACGACGAAGCTGCAAAAAGACATAGGCCCGAGGAAGCGCTACAC ;BBB=9@BAA3AA@>4=A>?<A@@=8<?;@8@@>>2=>8A69>5>4<==< RG:Z:474747 -430_1779_172_F3 0 chrX_part 25672 37 49M * 0 0 CTGGAAACCATCATTCTCAGCAAACTATCGCAAGGACAAAAAACCAAAC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]][[]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -430_179_99_F3 0 chrX_part 14832 37 49M * 0 0 CCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -430_1871_988_F3 0 chrX_part 14560 37 49M * 0 0 AAGGCTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCC ]]]]]]]]]]]]]]]]]]]]]]]TO]]]]\]]][T]]]]]]]]]][]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:1T47 +430_1779_172_F3 0 chrX_part 25672 37 49M * 0 0 CTGGAAACCATCATTCTCAGCAAACTATCGCAAGGACAAAAAACCAAAC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]][[]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +430_1871_988_F3 0 chrX_part 14560 37 49M * 0 0 AAGGCTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCC ]]]]]]]]]]]]]]]]]]]]]]]TO]]]]\]]][T]]]]]]]]]][]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:1T47 430_1994_1381_F3 4 * 0 0 * * 0 0 GACTCGGTCTCAGATCCAGGAGACTAACCAACCTTGAGGGAAATTAAGAG @BBBABBAB==ABB@>A@A?A@B?A>B@=?@AAAA=AA@8;ABBBAA?@8 RG:Z:474747 -430_392_28_F3 0 chrX_part 12248 0 49M * 0 0 GGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTT ]]]]]]]]]]]]]]]]]]]]]]]]][]]]]]]\]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 XM:i:2 XO:i:0 XG:i:0 MD:Z:40C8 XA:Z:chrX_part,+26915,49M,2; -430_491_367_F3 0 chrX_part 27259 37 49M * 0 0 TCCCATTTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]ZX]]]UU][]]]]]ZHR] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -430_607_895_F3 0 chrX_part 26847 37 49M * 0 0 GGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCG *]]]]]]]]]]]]]]]]]\]]]]]]]]ZZ]]]]\]]]]]]]]]Z[]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -430_688_525_F3 16 chrX_part 27375 37 45M1D4M * 0 0 TGTTTTAGACATGAAGTCCTTGCCCATGCCTATGTCCTGAATGGTATGT WW]]]]]Z]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]]]"!] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:1 XO:i:1 XG:i:1 MD:Z:45^A4 -430_691_1191_F3 0 chrX_part 26852 0 49M * 0 0 GCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:0 X0:i:2 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+14746,49M,1; -430_693_248_F3 0 chrX_part 14829 37 49M * 0 0 CCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCAC -]]]]]]]]]]]]]]]Z]]]]]]][]]]]]]]]]]]]]]]]]]]]]]]\ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -430_78_1025_F3 0 chrX_part 14935 37 49M * 0 0 TTGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]]]]]]]]Z]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -430_821_1672_F3 4 * 0 0 * * 0 0 ATCGGCTGGCGCCAAGAATGTATTTGACGGATGGTCCATCGACGGCAACC A@?AAAAAA@=?:BA>B@>ABA?@A?B>:=@?<<:@>B=74@B;=><@65 RG:Z:474747 -430_874_1668_F3 4 * 0 0 * * 0 0 GAGAATTAAGGAAGGGAGCTAGCGTACTAAGCATACGGACGAGACACCCG A@AA>A@AB=@BAA@A@>@?B@=@?B@:A@?>:>A>=69@=@8A@@:/9? RG:Z:474747 -430_89_1672_F3 4 * 0 0 * * 0 0 GGCGGAGATGTTACCCCGCGCGAGACCCATCACACGACGTGCAATCCGCG B?B?9@B@>=A@B=>A>?A@B<@==?=?@;>7A?>53A;>32@BAB>6?; RG:Z:474747 -430_900_444_F3 0 chrX_part 26504 37 49M * 0 0 GTGATGTTCCCCTTCCTGTGTCCATGTGTTCTCATTGTTCAATTCCCAC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:11T37 -431_1029_654_F3 0 chrX_part 27939 37 49M * 0 0 GATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTATCC ]]]]]]]]]]]]]]]]]]]]VK]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:17G31 -431_274_859_F3 16 chrX_part 14611 37 49M * 0 0 TCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGA ]]]]XT]]]]]T\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -431_362_522_F3 4 * 0 0 * * 0 0 CAGCCATAACGCGAGAAAGAAAGAGTATACGATTCAAGAATTAAGAGAGG ?B@?>ABBAA>B?A?@A@A@BA=A<8@>A?2@A@>AA?A?@<@A::779> RG:Z:474747 -431_427_471_F3 0 chrX_part 28034 37 49M * 0 0 CCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]WT]]]TR]]]SU]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:14A34 -431_436_304_F3 0 chrX_part 26555 37 49M * 0 0 ATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTAC ]]]]]]]]]]]]]]]]]]]U]]]]V[]]]]]]]]X[]]]T]]]]]][]\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:11C37 431_44_655_F3 4 * 0 0 * * 0 0 GCTATTAGCCCATTGTCAAGGCGACAGACACACAACAATCCGACACCATC >-<=>@@4:=>@?A:>=9=::::=:5<:<66=7865<9;<59=13:+<;; RG:Z:474747 431_50_371_F3 4 * 0 0 * * 0 0 CGGCCCCGTCCAGAAAGAGAGCCCCGACTCCCCAGGGCTACCAGCATAGA =AA@@AAAABBBAB@=@9@A@A@A?>B<??AA>@;?@?@>B?6=B7@8A@ RG:Z:474747 -431_510_914_F3 16 chrX_part 1438 37 49M * 0 0 TCCTTCTATAGAGTCTAGTTTGTGACCATATTTCTCATTCCAGAGGAAA ]]Z]V[Z]]]]]]WY]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -431_524_1355_F3 16 chrX_part 28191 37 49M * 0 0 GCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACAATGGGG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -431_753_1184_F3 0 chrX_part 27127 37 49M * 0 0 GAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTG Z]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:23T25 -431_933_606_F3 16 chrX_part 27360 37 49M * 0 0 TGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCCTATG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -@PG ID:bwa PN:bwa VN:0.5.9-r16 -@RG ID:474747 DS:description DT:2011-03-14 LB:lib-child-1-A PI:400 PL:SOLID SM:child-1 -@SQ SN:chrX_part LN:37500 +431_274_859_F3 16 chrX_part 14611 23 49M * 0 0 TCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGA ]]]]XT]]]]]T\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,-26717,49M,2; +431_362_522_F3 4 * 0 0 * * 0 0 CAGCCATAACGCGAGAAAGAAAGAGTATACGATTCAAGAATTAAGAGAGG ?B@?>ABBAA>B?A?@A@A@BA=A<8@>A?2@A@>AA?A?@<@A::779> RG:Z:474747 +431_427_471_F3 0 chrX_part 28034 37 49M * 0 0 CCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]WT]]]TR]]]SU]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:14A34 +431_436_304_F3 0 chrX_part 26555 37 49M * 0 0 ATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTAC ]]]]]]]]]]]]]]]]]]]U]]]]V[]]]]]]]]X[]]]T]]]]]][]\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:11C37 +431_510_914_F3 16 chrX_part 1438 37 49M * 0 0 TCCTTCTATAGAGTCTAGTTTGTGACCATATTTCTCATTCCAGAGGAAA ]]Z]V[Z]]]]]]WY]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +431_524_1355_F3 16 chrX_part 28191 37 49M * 0 0 GCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACAATGGGG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +431_753_1184_F3 0 chrX_part 27127 37 49M * 0 0 GAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTG Z]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:23T25 +431_933_606_F3 16 chrX_part 27360 37 49M * 0 0 TGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCCTATG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +431_1029_654_F3 0 chrX_part 27939 37 49M * 0 0 GATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTATCC ]]]]]]]]]]]]]]]]]]]]VK]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:17G31 diff -r eef07ff2b5b5498fa300f96cefe44f86d8c0e751 -r 030f3f7d0fdeee1d1052d40fb6ef64f76c395fe7 test-data/bwa_wrapper_out7.sam --- a/test-data/bwa_wrapper_out7.sam +++ b/test-data/bwa_wrapper_out7.sam @@ -1,422 +1,422 @@ +@SQ SN:chrM LN:16660 +@PG ID:bwa PN:bwa VN:0.5.9-r16 +853_7_53 77 * 0 0 * * 0 0 NNAGNCCGANNGGNGNNGTANGGNTNNATTGCGNCNCNNNNGGGCNNNCG !!14!3.15!!47!4!!8+1!$9!(!!,..1)&!3!(!!!!1/9&!!!,3 +853_7_53 141 * 0 0 * * 0 0 NNCNNNCGNTNAGTNGGNGGNGNGNNGGNNGNNNGGGGNGGGNGNGNGGN !!0!!!10!)!)0)!,-!##!%!%!!##!!'!!!%+&)!%$/!)!$!/(! +853_7_78 77 * 0 0 * * 0 0 NNCTNGGGGNNGGNGNNGGGNGGNGNNGGGGCGNGNGNNNNGGGGNNNGG !!##!###$!!##!&!!#$&!$&!&!!%&)'#'!$!#!!!!&)*(!!!&* +853_7_78 141 * 0 0 * * 0 0 NNGNNNAGNGNGTGNGGNCCNGNGNNCGNNCNNNGGGGNGGGNGNTNGGN !!#!!!5,!$!5&+!#8!)#!5!%!!3%!!'!!!$$8+!&)%!)!(!*#! +853_7_88 77 * 0 0 * * 0 0 NNGTNGGGCNNCTNGNNATTNTANCNNACAGGANCNGNNNNGGGGNNNGG !!61!5551!!13!4!!.,)!/,!3!!.)/17+!&!5!!!!-'0.!!!,5 +853_7_88 141 * 0 0 * * 0 0 NNTNNNGGNGNATGNCTNGGNGNCNNGTNNANNNGCTANCTGNCNGNTAN !!1!!!42!5!,25!24!77!4!3!!81!!,!!!5147!)/6!,!,!1&! +853_7_132 77 * 0 0 * * 0 0 NNGGNGATGNNTGNGNNGGGNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG !!$(!,#&#!!&#!#!!#($!%$!#!!#&%#$(!#!#!!!!)(*+!!!,2 +853_7_132 141 * 0 0 * * 0 0 NNGNNNGCNGNGAANGCNTANCNCNNTANNANNNGCCGNGAGNGNANGGN !!&!!!5#!)!)&+!2&!',!&!'!!1)!!1!!!4()$!/&,!'!'!0$! +853_7_141 77 * 0 0 * * 0 0 NNGGNGCCGNNCANGNNGGCNAGNCNNGGACCGNANGNNNNAGGGNNNGG !!54!9518!!1&!5!!/31!)0!6!!)533/:!5!6!!!!)/<:!!!,7 +853_7_141 141 * 0 0 * * 0 0 NNGNNNCTNCNCCGNGGNAANANANNAGNNGNNNGGGGNGAANGNGNGGN !!,!!!),!5!3)+!//!),!3!9!!&/!!+!!!**#)!.)(!(!(!43! +853_7_146 77 * 0 0 * * 0 0 NNCGNCACCNNGCNGNNGCTNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG !!10!/240!!0)!2!!#&'!'5!(!!(.-*$3!*!4!!!!+#(.!!!.( +853_7_146 141 * 0 0 * * 0 0 NNCNNNCGNGNGCGNGANCCNGNCNNCGNNGNNNCTCCNGGTNCNTNGCN !!1!!!33!4!#15!7(!51!1!3!!.5!!5!!!/)/,!&-/!,!.!4,! +853_7_269 77 * 0 0 * * 0 0 NNCGNGGGGNNGGNGNNGGGNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG !!%&!('#%!!#*!#!!/##!&)!$!!'$',%,!%!2!!!!3,,*!!!,2 +853_7_269 141 * 0 0 * * 0 0 NNCNNNGCNGNGCGNAGNACNGNCNNGCNNTNNNGGCANCCTNGNTNTGN !!3!!!/.!+!*4,!42!)8!2!3!!62!!0!!!84;)!)7.!5!/!&%! +853_7_321 77 * 0 0 * * 0 0 NNGANGTGGNNGCNTNNGGGNCGNCNNCGAACGNTNANNNNGAAANNNGG !!+$!+21(!!*-!.!!)#1!8/!9!!6,3+%6!'!,!!!!2&6,!!!&2 +853_7_321 141 * 0 0 * * 0 0 NNCNNNACNGNGAGNCANCCNANGNNGGNNGNNNATTGNCCCNGNANGGN !!$!!!&'!.!*##!6$!#1!+!#!!.+!!)!!!36(#!*5'!#!4!+(! +853_7_386 77 * 0 0 * * 0 0 NNCGNGTAGNNGANGNNGTCNCGNANNGAAGTGNTNGNNNNAAAGNNNGG !!31!:7-%!!:,!-!!21,!77!)!!227:9:!2!;!!!!)',%!!!86 +853_7_386 141 * 0 0 * * 0 0 NNGNNNTCNGNGCCNCCNTCNGNANNTCNNANNNGATANTCGNCNANGGN !!;!!!86!=!;9=!%5!58!<!2!!62!!&!!!&3:&!//8!*!7!5*! +853_7_405 77 * 0 0 * * 0 0 NNGCNAGGCNNTCNGNNAAANGTNGNNAGAAGGNANGNNNNATCTNNNCG !!<8!8;==!!;>!:!!7:7!7;!8!!7:>48=!2!=!!!!536*!!!;: +853_7_405 141 * 0 0 * * 0 0 NNGNNNAANANAAGNTCNGTNANGNNTGNNTNNNCATGNCGANGNCNGGN !!=!!!;:!>!<8=!9<!:<!=!>!!;8!!;!!!;//1!&(&!/!'!*-! +853_7_411 77 * 0 0 * * 0 0 NNCANGAAANNTTNGNNAGGNAGNANNGAAGGGNGNANNNNAAAANNNAA !!,/!13;,!!&,!+!!2/%!*1!$!!%*)+#,!,!&!!!!'-'&!!!++ +853_7_411 141 * 0 0 * * 0 0 NNCNNNAANCNAAGNAGNCGNCNGNNGGNNGNNNCAGANTCGNGNANGCN !!$!!!-#!#!*#+!,&!2*!#!#!!%'!!)!!!'$)$!/-#!#!'!,+! +853_7_445 77 * 0 0 * * 0 0 NNTANTGCANNACNCNNCGANCCNTNNTACGGGNCNGNNNNTGGGNNNGG !!&'!*+'#!!'%!&!!,%#!)%!(!!'##$&'!#!$!!!!$$#,!!!#$ +853_7_445 141 * 0 0 * * 0 0 NNGNNNTTNANGTTNATNTCNANCNNCTNNGNNNAAGANGGGNGNGNGGN !!&!!!0%!#!,&'!,'!$$!&!,!!&)!!'!!!..*&!#,7!1!.!10! +853_7_469 77 * 0 0 * * 0 0 NNGGNACAGNNGANTNNGAANGCNANNAAGGAGNGNGNNNNAGATNNNAG !!##!*($&!!##!#!!%))!#1!%!!(,##$.!#!(!!!!##'#!!!&$ +853_7_469 141 * 0 0 * * 0 0 NNCNNNCANTNTCTNTTNTTNANTNNAGNNCNNNGTTTNGTANGNTNTGN !!#!!!%%!$!))+!$,!*%!.!(!!.#!!#!!!#&##!##&!#!#!##! +853_33_1583 77 * 0 0 * * 0 0 TATGTATTTCGGTACCGCACAGANCACTCCAACCCGATAGCGTCAAGTCC /&2%,)+,+:&#:;,5*)8/%19!,%*1/%;#<952%:27#%%&4.,#-1 +853_33_1583 141 * 0 0 * * 0 0 CCCGCGCTCCCGATAATATAATCACCGAAACACGAAGACCAACAGGCCCA ),+&#,)',$##2$),%2'+#$)2),#$(+#+##&*%(-%1%#(##$$2, +853_33_1649 117 chrM 7331 0 * = 7331 0 TCACCTAATCTGCATGCAGCTCTGTCNTCATGTAGGAGTTAGAACGAAGC %1.)#$$1%%$)#)$&);=1968:42!:8<:78;888<6688=<<9<:9< +853_33_1649 153 chrM 7331 37 49M = 7331 0 TCACAGTCAAAACAATAGGCCACCAATGATACTGAAGTTACGAGTATAC XNT[[[YTQXUVKHX[]ZMOZ]SV]X]\Y[\ZVRTZ]][Y]]VNQUWSU XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:37C11 +853_34_1182 77 * 0 0 * * 0 0 GTTAAGGGTGTTAGGGAACCCTANAAAGCCCGGGTTTCGTGGGGGCGGGC ;7;5*982;:/;,46::69<4<(!4295.6144&::<4*.-+%$#.#,(# +853_34_1182 141 * 0 0 * * 0 0 GGGAACATTATACGGCTTTCGCCCCCTAGACCGCACTGTGTTGGGCCGTT >>>:9<<>><;58987;::9718859:2;75'3%(720&14%6(,51-&& +853_34_1358 117 chrM 7792 0 * = 7792 0 CGCCTCGAATATTGCCCTCAGATCAANACTGTTGACCCTCGGGCCAGGCC 9/8<9;6:<8=,>=<<;=<<9:><>:!9;@=:>?<=>><=>>?<=;??<< +853_34_1358 153 chrM 7792 37 49M = 7792 0 CTCCCTAGTGATATGCCACAGTTGGATACATCAACATGATTTATTAATA MV]YU]YXXTZ]ZY\]]]][]]]]]]]]][[]]][WX][Z]]]]]][[] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_35_596 73 chrM 477 25 49M = 477 0 CGATAGCTAAGACCCAAACTGGAATTAGATACCCCACTATGCTTAGCCC !SSNPYYYUQPS\VSSRPPZ[Z!!NXX\VXLL]]XUMKXYRTRKLV\Y! XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:22G26 +853_35_596 133 chrM 477 0 * = 477 0 GGCTCCTATTTTATTACGTGTCCTTCTCAAACTGACAGCGCAATGCTAAG >978>8=9;>;:2>;;85=3;::=;::7:8:68)<5;859>?<>:<6<58 +853_35_669 77 * 0 0 * * 0 0 TTGTGCTGTCACGGCAAGGCGGGNGAGTTGGTGCGGCTACTCTCATCTGG #4(,,&5,'-2(&5'10&)&-&3!,)+.*9&););:,8)7&3<&,/1:)& +853_35_669 141 * 0 0 * * 0 0 TTCTTATAAAACCGCTTACCCCCTAGGTCCGAACATCTTGCAGGGTCTTG ,)&#<&38':&)-2/*4-'*+,5:0(3(+.+&,)9,&%1%*'(+.+-&&' +853_47_795 73 chrM 649 25 49M = 649 0 CCCCGATAAACCCCACCATCCCTTGCTAATTCAGCCTATATACCGCCAT ]]\]]]]]X]]YY]]KL]]]NO][X07]]VIRZ]Z"0]]]]RKR]KF\V XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 +853_47_795 133 chrM 649 0 * = 649 0 CGGAAGGAGCGAATACTGAACCAACACAGGTTAACTAGGAAGAAAGTGGA >?@;;?>=A@A9:>;:>=<;=>::88<;=8=<:95>08=5.(364,)1,) +853_47_831 77 * 0 0 * * 0 0 TGGATACACGTAACAGAGGACCGGGCAGACTACTCGGGGGCCGTCGGTGG .)/'0(,&#*#'#)#(#(#*(#'%%1.3#$-2%$&/#$(#'%'%(##%+, +853_47_831 141 * 0 0 * * 0 0 TAAAATCTCGGATGGTTGCCTTGAACAAAAAGACAGCCCCGTCAAGGGAA 5A,&5,))%(()&,13(.9<2++8,>99*(%184,=/&5+)6/)0.&)64 +853_56_1228 89 chrM 8643 37 49M = 8643 0 TAATGACCCACCAAACCCACGCCTACCACATAGTAAACCCCAGCCCATG Y[]MKVY]]]]QT]]]YY]]]]Y]PN]]]]X]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:22T26 +853_56_1228 181 chrM 8643 0 * = 8643 0 CCCTGCGCCGAGCCGTCCCCCCCCCGACTGAACTCAGCAGATACTCGCAG (-5&(2)5(/&-:%&4&9%&-.1266:=:?<<?>>;??<:==<:?=?>;@ +853_56_1324 77 * 0 0 * * 0 0 GGGCTTTAACGCGTCGGCACGAGGTAAGTGGAGTGGCGATGGCACGATTC 5,(,)5+)57+94*,*3-#*4,2&2$2'(,2)-)22/)$23/1*)24'%$ +853_56_1324 141 * 0 0 * * 0 0 ACCATGTATGGAAAAAAAGAGTAGAGGAGGGAAACAATGAAAAACGGACC /6+58//.61366638/)&988).5::15578427=88&0:>;59:(6;< +853_82_2023 89 chrM 1195 23 49M = 1195 0 AGATAGAAATTTTAACTTGGCGCTATAGAGAAAGTACCGTAAGGGAACG XX]]VQXWSNT]]]WV]\Y]]]]]]]]]]]]W\]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrM,-1196,1S48M,3; +853_82_2023 181 chrM 1195 0 * = 1195 0 CTAGCTCTGTACGCGGCTTATGCGTCTCTTAGGCTCCCTAATTCTAATAC 75:5956654=71?9858;96;9>;;:?8:<=8=45762<?57<<>79;9 +853_83_197 77 * 0 0 * * 0 0 GGCAGATGATATGGACTGAGTGGGGGGGGAGGGGGGGGGGGGGGGGGGGG 8;95;6:96698;6;89:3=%(-*$&(+$&#%.''+(.-%-/5.*.*4/5 +853_83_197 141 * 0 0 * * 0 0 CCGTCTCCCGCGCCGCAGAGACACTACTTCCTCGCCGCGGTGCGCCGGGC /9;58179583997;5591<26;797=55:995$)&$'#-$(&&'(*(%& +853_112_119 77 * 0 0 * * 0 0 CCTAGGATAATACGCGGACAGGGGAGCTCCGGGGGGAGGGGACGGGGCGG 7)&8327,(41&&),%1/)%+242(1,)')&15,)&05#$50,$$87&.$ +853_112_119 141 * 0 0 * * 0 0 TCCCGGGACAACGGAATTAACAACCCCCGGGTGGAATCGGGTGGGAGGCG ))&)994&,/1(+-+.-('(02)145,.&42,#&).,&(-0.%,',%:(0 +853_112_253 69 chrM 1041 0 * = 1041 0 GAACGCTTATGGGGTCCGCTAGCTAACGCCGCCTGGCCAATAACTATAGT ;9;97857&:;6;&983;4=83/,::2=,8;7(&<;/8+275(/9-1&(; +853_112_253 137 chrM 1041 37 49M = 1041 0 ATAACCAAAGTGTAGCTTAAACAAAGCATCCAGCTTACACCTAGAAGAT WTVVUWTQYWRMT][YTWNITY]ZSW]]]RU\Z\]]]YTWVSTWX\ZM> XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_148_1347 73 chrM 14085 37 49M = 14085 0 ACTCAAAATAAACACAATATATGTCATCATTATTCCCACGTGGAATCTA #$]]]]]]]]]]]]]Z[]]]][V\\[]U\[Z]KQ]YOQW]]QUYWWZTQ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_148_1347 133 chrM 14085 0 * = 14085 0 TAAGGCCCGTGCCGGTCCGTCCAATGATATTGGAGGAGTTCCGGAGCAAG A=;@>>?=@@A@?A@>@A@=9?9<A@;9>>>>>7;=8<=;8;?;18?62= +853_148_1509 77 * 0 0 * * 0 0 GCTGGGTGAAAAGGCCCCGGCTTCACAGAATGTAATTTCTAATAGTCTTT -'-:+&1.,)&&=(=)?7=<=4&,>:(;,&<))))8)+(,'&(4&,(,3) +853_148_1509 141 * 0 0 * * 0 0 TGAATGTAAATTAAACGGGAGGAAAAATCTCCCCACAATTGAGGCCTTCC ./<&1=35>,/3(6,,1<3*)7,53)69<&(A<8+(;91).8&+7(:&<7 +853_157_314 77 * 0 0 * * 0 0 CTCGCCTGGAATTTAGCCATGGCTATGTTCTAGGTGCTTTGTTAGTTGCG 79();(1<))&2(5+&8&+.9-'198,',))&&7&:*,4)(6&2&/:&77 +853_157_314 141 * 0 0 * * 0 0 GATAGCAAAAAAAGGGGCCGAGCGCAAAAGCCGACCTGAGCACAGACGAA 9;:5461242#)#*1####('$$$##'#%#'$$%###/$%($#'#$$#+# +853_157_582 117 chrM 893 0 * = 893 0 ATTTTGATATTGCCTAAGCCAGGAGGATTATGGGGTACCTGATGTTGTTG 2&==93398<:46<@<:?:==6>:<<<=?=>;;<;A;;:>;;><::??:= +853_157_582 153 chrM 893 23 49M = 893 0 GCTTAATTGAATCAGGCCATGAAGCGCGCACACACCGCCCGTCACCCTC O/3]Y[12]PSUUY\]XXYZ\VY]]]]]]]]]]]][]]]]]]]]]]]\\ XT:A:U CM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrM,-895,2S47M,3; +853_158_402 77 * 0 0 * * 0 0 GGTTGTTAAACCGTCCCGGGCGTTATCCACGTGTGATACCCGCGCATGTG 711&$(-)##.,&((&(4('83><-:94,'.;2&*:<0%&7,3#+02#(# +853_158_402 141 * 0 0 * * 0 0 TCACAGACCCGAGGAAGCTTCGTATATTTGCCACTAAGGGCGTCGGGGGA 5;&35,<55<8<6;<3646:618477::95<92=752071+2339-.#11 +853_158_569 69 chrM 6195 0 * = 6195 0 TTCGTAATTATATTTGTCGGGCATTATGAGTACGGAGGTTATTATATAGG 8>34:8.56,9/7<=-80.562,994:)3,<#%85(,#7&%,'#3#,#%& +853_158_569 137 chrM 6195 25 49M = 6195 0 ATCCATTGGCTTTCTAGGCTTCATCGTATGAGCTCACCACATGTTTACA $]\YYYQM\]\WX]\\MN][YQS[\WS\YV]]VV]]MFY\]XPSV]SGL XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:30G18 +853_216_501 77 * 0 0 * * 0 0 CCCTGGCCGGTCGGGTGCGTCACGCGCCTGGCGGAGCTCCTAGCCACGCC />61=+11:/5/+/(&/1'%#:3&;&93(';0$4&*9,&/+))2')65.& +853_216_501 141 * 0 0 * * 0 0 CTTTTAATGGGTCCCTCTCTTACAAGGCTCTGTTAATTTTTCCTTTCGAA 85<85,7=47;:627;<6<4<::445934*:5<2)$9&-$273#/#6-.* +853_216_648 117 chrM 1235 0 * = 1235 0 CGAGGCAGCCCATTGAGTTTGGTCCCCCTTAGTTACAGGATTTCCAGCCG +&'%(14'2,09:7(776;53=99/58>75;88784;/:8)884;7/;6/ +853_216_648 153 chrM 1235 37 49M = 1235 0 AAGGGAACGATGAAAGATGTATTAAAAGTACTAAACAGCAAAGCTTACC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]SU]]]YY]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:19C29 +853_218_1907 73 chrM 1146 37 49M = 1146 0 TACCCTTAGTCACTTAACTAAAACATTCACCAAACCATTAAAGTATAGG YQOTRVYOS[\Z[XX]\YOS]XW]]\Z[X\ZUZWZ\XVVZQPMKWTUJ> XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_218_1907 133 chrM 1146 0 * = 1146 0 GAATGGCTTGACAAAGGGAGAAACGCATATCCTGTGATGTTATTTAAGAG 5).5<9?642>9+;9<;;:28=4886909479&7,3;&#9+:,6'5,(&/ +853_219_184 77 * 0 0 * * 0 0 GCATTTGCGACCATTTTGGGGTTGGTGGGGTGGGTGGCCGGTGGGTTGGG /&3&,)/,$)/&)2&#%(:/+#,*&$+$$(&1)/&+1##'&'#-,)&'%- +853_219_184 141 * 0 0 * * 0 0 CAGTAGTTGCATGAGTCATGAGGTTGGGTTGTTGGCAGCTGTTGTCGGCT '*)%%,,##3,1+,,#'&)#+#/-),%(&+$)%#%$&(&/#&(#%#'$%$ +853_233_615 77 * 0 0 * * 0 0 TTATGGATTAAATTTTAGCTAATTTGGCCCCTATGGATAAGGAATCCCTA (7.1:154753447,222383647814041,3+,4.-/%+21((2)2'7) +853_233_615 141 * 0 0 * * 0 0 GCCTTAAATCGATATAGTCGCGGGCCCCAACCGGGCCGAGTACACTGGGC ;@),<%8)(&<(0)<&<)&53.*%/,5,6*/6;.)+>,%.,7,#,,*$%$ +853_233_834 69 chrM 8993 0 * = 8993 0 GGGAGTTCTAGTGGAGAGATTATTCGCCGCCAGCTGCGTTGAGAGATGAA =<<=;><:6:;<<3>=:=8>><<8;<=63;>99099&%,##&'2##%/$% +853_233_834 137 chrM 8993 37 49M = 8993 0 CCACCCACAGGTATCCACCCCTTAAACCCCCTAGAAGTCCCCTTACTCA ]]]]]]]]]]]]]]]]]]]]]]\\]]]]]]]]]OQ]]VY]]SOVQ\]YS XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_244_474 77 * 0 0 * * 0 0 GATTGAGAAGGCTGCAAACGGCGAACGACCGGGCGGCCTAAAACCACGGA )15$&/&*,&,,(&&0.,&,07:)/1/4&))96&)'/&''.(+&1'&)'' +853_244_474 141 * 0 0 * * 0 0 CGGACAGAACGAAAACTCCTAACAACAGAGCTGAGCAAACCAATCCAGCC *$(5.+###%$$2*+'#$('/(#*$$$$0%'$$3',$(*#&'4(%$#/$$ +853_244_781 117 chrM 652 0 * = 652 0 GCAGCCACGAATGTCAAAATCTGGACCACTATACGGTGTCATAAATTCTT &24)57:,,<=892<?=>;9>989@=;>;:?7><<>;=7=86>>;:9><8 +853_244_781 153 chrM 652 37 49M = 652 0 CGATAAACCCCACCATCCCTTGCTAATTCAGCCTATATACCGCCATCTT ZOE[\XROW[]ZQJW]I?T]]][]]]]Z]]][Y]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_255_146 77 * 0 0 * * 0 0 CCTATGTCCCCTGACGGCACGCCGGGTCACCGAGCCGGGCCGCGCCCGCC 5.)8&)'++7:',%'&&,(1)1/8'('%1)20#%,4-$.&$''(1(0(/7 +853_255_146 141 * 0 0 * * 0 0 GGGAAGAGCCAGGGAGGACTGGGGCTGGAGCAAAAGAGGCGAGGGGGGCG #$##$%###&##'#&##$###&#&$######$####%%$$/$'%$'#$$# +853_255_403 117 chrM 13900 0 * = 13900 0 ATCCTCAGCACATAAGTGCGTGATTACCGATTGTATCATCGCTCGGTTGT 130>7&9+9:-83?<09=>;85?>=78;<<=99;>)87;>;9;=>?<:8< +853_255_403 153 chrM 13900 37 49M = 13900 0 GTTGTATAACCAAAAACAACCAACATTCCTCCCAAATAAATTAAAAACA 7FFGW]]]RIS\]]YT\]SMKT\TW[\\]Z[]]]]]]][[]]YZY]]Y\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:41C7 +853_256_428 77 * 0 0 * * 0 0 TAATTCAAGCAGATAAAAGAGTGTGCGCCCACCCTCCAAGGAAATAGAAA 2=<66<=>6::3<,8;>:3<3825,:1:98897,057::24<986:+,:: +853_256_428 141 * 0 0 * * 0 0 ACGAAGCGGTGTACCTGGCCCTACGCGGAAAGGGGGAAACCTTCCCAAAT @?8<A:A969=<:71?;;<5==>81><1<&??:264@>>/=<-819><() +853_256_834 117 chrM 9813 0 * = 9813 0 GCCCTCTGGCAAACCTACGGTAAGTTTGCCATGGAATCTTTGGCGACATT ######$$##############$#&####$&$##&##########)#&%' +853_256_834 153 chrM 9813 37 49M = 9813 0 TGAACCCAAAAAGGGCTAGAATGAACTGAGTATGGTAATTAGTTTAAAC DL]TAFU]\TDH]]]WZ]\NU\VZVU\]]]Z]]Z\\Z]]]]WZ]]]WWX XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:14A34 +853_266_697 89 chrM 1002 37 49M = 1002 0 AAGTCGTAACAAGGTAAGTATACCGGAAGGTGTACTTGGATAACCAAAG ]]]SQVY]]\]Y[ZY][]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]# XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_266_697 181 chrM 1002 0 * = 1002 0 CAAGTCCACTTATATATGCGCATCGGGTTTTTGGTGGAAGGTTGTCATGT ::<;9796:::;9;;;<4>=2=;<;?=>?=;==?><6;:<:<>=@>;<=? +853_266_1092 77 * 0 0 * * 0 0 GAGCCGGAACGAGACAACCCGTTCTTAACATCCACCACGCGTGGGCGACG ;)2))/8%'10:712<67<3(39</68/5)6&')/170&49)6)//,)&& +853_266_1092 141 * 0 0 * * 0 0 GGCGCGGATTATTGTCTTAGCTTTGCTACCGTTATATGCGCTTGTCTTGT ,318925,37;9,999<52622989/:7220#3$247,',*1'##,1,#5 +853_279_1056 77 * 0 0 * * 0 0 TGTGCTCTTCCGTCATAAGAGAACCTTAAGCTATCACGGACACAGCGCCG :;76;:=;:<7::;<<<3<76;:<9=<5;87=3<=5@3<7388771:;5< +853_279_1056 141 * 0 0 * * 0 0 TGGAGGGTACGATTAGAAGAGGAGGCGGTACAAATAGACAATTCCTCACT =<;<<=;><:>;=<<=>=:<<>=;<;=;<==8<87<7@8=<9<9;:1:3: +853_279_1330 117 chrM 8561 0 * = 8561 0 CTTTTTCCTTCCCTTGCTTCGGTGAGCATGAGTTGCCTTCCGTTTTTTAT 7%,117%%154#2639#1#,5'+)23%($$1#$#1<$&>-<-'9)4).<+ +853_279_1330 153 chrM 8561 37 49M = 8561 0 AACTATCCTCGAATTCGCAGTAGCCATAATCCAAGCCTACGTATTCACT JI[VXUU]]][\]]]WW]]]]\]]]]]]]]V]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:24T24 +853_292_158 77 * 0 0 * * 0 0 AATGTGCGTTTAAATATTCGGTCTTGGATGCTGATCAGCTAAAACGTATG ;=;;9;>>89=><94<;>9:;:896;;<8;3<<177=:5<6=:73<:9'9 +853_292_158 141 * 0 0 * * 0 0 AACTTTTCTGGCATTTGAGCGCGTTTTGGAACTGACGAACAGATGCTCCT ===9<<;<=<<>:<:=<>::7=9<=:;9:>;;98=58>;>4=@;:,;=1= +853_292_700 117 chrM 2055 0 * = 2055 0 CCCCACCACACCAGCCCCCCAAGCTTATACCCCGTACTCTCCTCATTACC 5.&/,#/++%):4'*/66:/.<6:82<6715=74+&>;<8:;>;=9<;9= +853_292_700 153 chrM 2055 25 49M = 2055 0 CACTTGTTCTCTAAATAGGGACTTGTATGAATGGCCACACGAGGGTTTT U[XVKS\MRZS\]ZTXZX]WT[[]]]ZUUT]]]]WVZ]]]]]]\ZUU\& XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:9C39 +853_365_890 77 * 0 0 * * 0 0 TGTGGGGGGGGAAGGGCGTCCGGCTAACGTCTCGGCGGGTGCGGGGGGGG <:7:=<;;;<9==><<;9<>:;>>;:;7<;<68(-#6+1&5,(4'2'.*2 +853_365_890 141 * 0 0 * * 0 0 AGAAGTCCGGGCGTAGTGTATCCGAGGGGCAAAAACTCTAACAACGGACT =9?=>7:9;A=9==??:<8?<=9@6<:>>8<?=>:=6:=<?8;<398:8) +853_365_1447 117 chrM 5643 0 * = 5643 0 ACCATTGGATTAGGCAGCCGTGGGGCATACTCATACGGTCTGACAACCAT $###$#$#(##&$&#8$277:3079<60;993;8;5+97=7)9:;:(7<6 +853_365_1447 153 chrM 5643 20 49M = 5643 0 TCCCCGAATAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTA NJUSYMK[RT[XXTY\ZZOT]]]XX\Z[XY]]]]]]]]]]]]]]]\]][ XT:A:U CM:i:1 SM:i:20 AM:i:0 X0:i:1 X1:i:2 XM:i:2 XO:i:0 XG:i:0 MD:Z:0C48 XA:Z:chrM,-5642,1M1D48M,2;chrM,-5644,1S48M,3; +853_368_1718 73 chrM 1149 37 49M = 1149 0 CCTTAGTCACTTAACTAAAACATTCACCAAACCATTAAAGTATAGGAGA (]Z\]SR]]]\Z]]]]]]]]]]]]]]][]]]]]]]V]]]WW]]]SO[[X XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_368_1718 133 chrM 1149 0 * = 1149 0 CTCCCCTCTCAGCTTGATTCCAAACGCCGGGATCTAAGGGTAATGTTCCG ;;A>A>?A;@@<><9A;6:?A:=1><<A@6=5515A<>8397:@1<6<3: +853_369_74 77 * 0 0 * * 0 0 AGCCACGGATCAGAGGGGGAACGATGGTATAGGAAGGGATAAGTCGGGGA 7:9875:8:7<69;78.$2/9&)6%0-$5)96&879'$8,&(/))6*2&( +853_369_74 141 * 0 0 * * 0 0 GGGTTCAAGCATGGGAAGTGGACCACAGCTCCCGACGGTCCACACCATCA =9756::884:54:791:47358965758589965&:94,&969;(5143 +853_375_367 77 * 0 0 * * 0 0 CCGATTGTCTTTCTGAGCGCACCGAATCAAGGTATCTACTAGCATAGCAT '+);,18&&&''),2&))4,%/1&5.1+-'/,'-1()))&'*)'+)&/&) +853_375_367 141 * 0 0 * * 0 0 GTTTTTTGGCGCGAGGTTTGCGCAGAAGGGCAAATTCCGGCAGCGTCGCG 5&')&(9<1,=?>:+,)6)&7,&(05/)1,',(0'&),&(6/7,,5,,44 +853_375_856 69 chrM 883 0 * = 883 0 GTTTACTTGAGTACATCCTCAAGACTGTCTTATGCCGAGGCTGCCTTTGA 8<;;>??83=>;63:@:?9=@<=>8@:?5?>8=1?;98;9<>4&40&2(% +853_375_856 137 chrM 883 37 49M = 883 0 AGAATAGAGAGCTTAATTGAATCAGGCCATGAAGCGCGCACACACCGCC ]]]]]]]]]]]Z]]]]]]]]]]]]]]]]]ZTV]]]]]]]\[]]]][]UQ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_381_1334 89 chrM 556 37 49M = 556 0 ATTCGCCAGAGTACTACTAGCAACAGCCTAAAACTCAAAGGACTTGGCG WLNHN\]]]]]]]]]]]]]]OJ]]]]]]]]]]]]]]]]\]]Z]]]]]]' XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_381_1334 181 chrM 556 0 * = 556 0 CCCCATCATACCACATAACACCACCAAGGCTCAAGGTGTCTTAATACCCA *%-#&2+,%&#2'%#,&%&.%7;';=?>%=<?>68:?@,;=?>%)4@>=@ +853_381_1648 77 * 0 0 * * 0 0 TTGCAGACTAGTTTCCAGGTATATTTTTCAAAGCCTTATTTTCTTTTTTT 986+0<95:8;(>5<<)58?,4)8;<5&,9/),()35)-3&7(&832$&/ +853_381_1648 141 * 0 0 * * 0 0 AGAAACGATCACAAATAACCCAAGTCTCGCCAAGAGAGCTTGATCCGAGA 8:9:;<;::::;65&:178(:8:517:35$3385)958.$<578%7:7.) +853_383_962 89 chrM 865 25 49M = 865 0 GGATTTAGTAGTAAATTAAGAATAGAGAGCTTAATTGAATCAGGCCATG O\]SGKS[[MJ]]Z10[]WHG]]WQT]]]HI\\YBDWTW]XU\]]VY]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:8C40 +853_383_962 181 chrM 865 0 * = 865 0 GGCCAATTATTGCAATGGTATGTTGTGGGGCTGGGGAGGTTGAATCTCTG 5*;3<8)659?)@>?:(99>:7==<?5?;A=:<2>A<;:==<=:>;9??@ +853_383_1666 77 * 0 0 * * 0 0 AGCGTCTTACAGACCCAACTTGAAGCTTGCAGGAAGGGGCAAACCAAACA ,,('6:.6-&7,(=15&%&<&&1(/16',.(1&&8($$&&+&)76,5815 +853_383_1666 141 * 0 0 * * 0 0 AACCACTGAGTACGTAGGCGGTGCAACCGAACCCCGAGTATTACCTACTG 18$+&,#./,8#8('./99#4(58);.22,;,2,%6,%)(,.,*957)(' +853_389_1983 77 * 0 0 * * 0 0 TACCGTCTTTCGATTGACCGGTCGGTCGGGGGCCGGGTGTCCGGTTCCGG ,&9):88.&'&&/.&4&%4(6#$4531,)66,.2-51#'2/&'5845,8. +853_389_1983 141 * 0 0 * * 0 0 TGGAGCTACACCATCCCCTTAGGAGGGGGAAAACGTGGGGTGACGTGGCG 715;6741498/6459/6448/6573'569<98845/6:9$),4%.560( +853_390_660 69 chrM 1251 0 * = 1251 0 CTAAGGCAACGTATTGGTCGCCTTATGGTAATGGTACGTATAATTAGGCT >8A==;<<<>;;A98<;:<=>;9;=;;;;>;8<;;@5;:81=:894;:), +853_390_660 137 chrM 1251 37 4M1D45M = 1251 0 GTGCTTAAAAGTACTAAACAGCAAAGCTTACCCCTTTTACCTTTTGCAT ]]]!%\W]]Z]]]]]YW][ZY]]]]WU\]]]\]Y\]]\V]23]]]HFRS XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:1 XG:i:1 MD:Z:0A3^A45 +853_392_1916 77 * 0 0 * * 0 0 GCGCCGGGGTACAGTGCAAGCGCGAACGAGACGAATTTGGGGAGGGCACT :<=<<<>>;>9<28A;<:*;:=95889<.:8;>34;6)%+6;05&::1+1 +853_392_1916 141 * 0 0 * * 0 0 GATGCATATCCTGCAAAGCACCAAGGATGGAAATTTGCGCTAAATAAGCC @;@A?>A;?@A>@@<=9A>??=<;A@9>A?=:;?=>;?<<?;<962&6): +853_393_183 69 chrM 660 0 * = 660 0 TCAGGATGGCCGTAATAATGGTGGCGTACACGCGCAAATTCCTTATGCGG =>;<<=*;4-;+9':>$427:&972<)71=;*793<1<1:;:7/9=)7/; +853_393_183 137 chrM 660 37 49M = 660 0 CCCACCATCCCTTGCTAATTCAGCCTATATACCGCCATCTTCAGCAAAC ]ZZ]\[]]]]]]]YZ][[[]]Y]]]]]]]]][]XV]]SGT\ULSXY]Z[ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_397_1746 89 chrM 9541 25 49M = 9541 0 CGCTACTCGTACTCATCGCATTCTGATTACCACAACTAAACATCTATGC DF8=*%8:ORJJNQOMD>LLOWUYMGGIQFNYV]SKPU]]VJGMFFVPJ XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:26C22 +853_397_1746 181 chrM 9541 0 * = 9541 0 GTCGTATTCCTTCCTTGCAGATATGTCATACATCCCTGCAATCAGACGAG ,5,+2.4.7/><1:777)5;78/97?:0<582/9<880;8;98;:7987? +853_398_593 77 * 0 0 * * 0 0 AATTTAACGTATGCGGTTTTCTCTTCTCAATCCTCACACCGGTAAGAACA (=714-?,:<,91)717878<7/9396=51,<<=,)/;8=5,:/8;7813 +853_398_593 141 * 0 0 * * 0 0 GACCCGTGGGCTCCACTGGTCAACGCCGTCCTATATGGCGGACTAGTCCT (,1&31,+//,&1?0,)(>91),,7(/0(1(3=/1>/)&83:5336:3-3 +853_423_1430 73 chrM 8093 37 49M = 8093 0 CTCAATCCAACAATGGCTAGTCCAACTTACATCAAAACAAATAATAGCT W]]]]]]]]]]]]]]]]]][\]]]]]]]]\Z]]]YW]]TKTO>=D?KXK XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:6T42 +853_423_1430 133 chrM 8093 0 * = 8093 0 CGGAGAACCCACCCGAGAGACATAGGGGCGAGATTCACCTGCTTTTTAGG >>5:<8<A<=:<=@<=5?:/=:8;7:=9<<87:<897:7891.=%;8/7; +853_424_115 77 * 0 0 * * 0 0 CCCGATACAGACCATGCGAATCGAGACGGGCTGTCTCCAGTCCAACCCGG 6>8:8<;>7?;;<,7>>;;8:<=16;:789549$%&6)'040$('%0''2 +853_424_115 141 * 0 0 * * 0 0 TGTTGACTAGCCGCAAGCTCCCTGGACAGAGGCAGTCTAAGCGGTCCGTT ;<<8<<>=9<=?:8:?:?8:A>;3;<=<8;<9?69>99;:;;77;:9/,; +853_439_1980 77 * 0 0 * * 0 0 CAATCAGTTTATGCAAGCTAAATCCCCGAGACTGAGAACGAAACTCTCGG ,<='0/71(/:.;2<<9:5>7?2<8<=9987;51?*=>:(7;<,()&:6/ +853_439_1980 141 * 0 0 * * 0 0 TGGAGCGATTTAGACCGTATTTTAGTCTCCGCCGATAATAAGAGCAATCT 952;8:98452>4=9;:0=3)6/76-666=777+<4::&86.;'7;:+5' +853_440_379 117 chrM 8797 0 * = 8797 0 TCCGTCGCGTCTCACGCCTCAGGAGCACTTTGGGACGCCGCTATTTGTGT 6<=8:7:366/<70;+5:9;7:;:<:899=89<8;:79><3:<8:5<8=9 +853_440_379 153 chrM 8797 37 49M = 8797 0 CCTTACCATATATCAATGATGGCGAGACATCATCCGAGAAAGCACATTC OOR\KGMS]SU]]ZY]YOQJQ]]\]]]]]]]]]\]]]]]]]]]]W[][X XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:21A27 +853_443_704 89 chrM 8985 37 49M = 8985 0 GCTGCTGACCACCCACAGGTATCCACCCCTTAAACCCCCTAGAAGTCCC K[ZHA@@A!.]]\]][]]]]]]]]]]XW]]]YT\]]ZX]]]]]]]]XY] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_443_704 181 chrM 8985 0 * = 8985 0 TGTTCCTGTAGTATATCACTTTTTTGCCCAGGACGGTGAGACACATGAAG 7:/><:;,?:::>;>=;:>>><9@>;>8A;=?@A@=?=?<=>AA>>AA<@ +853_443_1353 77 * 0 0 * * 0 0 AGCCGAAACGATTGTCGTGTAAAGGCGTCCGCCGGGTCAGATCGAAACCG 921/5>7972<889;:;9:3?>5;/95<509=7.878/4/;:.28;9/3( +853_443_1353 141 * 0 0 * * 0 0 GACGGAGGAGGGTAGTGCGGGGGGCGGGCGTGGGGCTTGAGAACGGCTCA 95:19@9979:<4,82>02:3;5.46:65:5<95<7:;7;:>9*;:<:82 +853_458_262 77 * 0 0 * * 0 0 TTACCTGCCTCTCCCTCGCCACTTGGATCGCCGGCTGACTCTACATTACA <;:=7:;;<8<=8;=<</<9?<9::<<:;9;;84:91#2&%,-($&&%*% +853_458_262 141 * 0 0 * * 0 0 AAGTCATCTTTCCGGGGAACCCCCCGGACCTTCCTTCTCCCAACCAAAAA >>;>=;<4><=>5;=;>2=>:>1;<><'::8>(=:?5%<=9;29<<=-0< +853_458_615 69 chrM 5320 0 * = 5320 0 TTGCTGTTACTGAAGTCATACCCTAAAGCTTAGTATGCGCGTGTGTCAAG 97899::;:<<:;;;<::9;;77:;;/8:=<6;86;34;;8695;:+5:< +853_458_615 137 chrM 5320 37 49M = 5320 0 TCTTTAGATTTACAGTCTAATGCTTACTCAGCCATCTTACCTATGTTCA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\\]]Z]]]YY]]Y][V XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_489_665 77 * 0 0 * * 0 0 GAAGAACGAGGTTTAAGATAGCGAAACCGCGACACGGACGGTAGAGTGGC ?::=-->4%&22=8)3<1;7$//6#)=(:%%<2(*,4,;7'92832:$9) +853_489_665 141 * 0 0 * * 0 0 ACGAGGAGATTAAAAAAAATGGGGTTAGATTAGATAAGATGAGAGGAGAG =>?><@=A<@@<?>>=:=:=;24&&)00+&$(4:%%'(4-#+16#-'1.$ +853_489_1193 117 chrM 5045 0 * = 5045 0 CCGGGTATAATCCATAATGGCGTTTTCCACTCTGCAAATACAGTAAACAG 85@06;<>)=55>29<;?)=>:<:===>5=>=>,><=?2=?<>>>=>=<= +853_489_1193 153 chrM 5045 25 49M = 5045 0 GCATACTAAGGACTGCAAGACTCTATCTCACATCAATTGAACGCAAATC RMO]UZ]]]]]\\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:16G32 +853_557_600 77 * 0 0 * * 0 0 TTGCCCCAAGATCGATCTTGTCCCGAAAACGTAAAGGGCCCGGTGCGAGA &+&))(51(,1&&:'7:&)=.8),/5034&.&31&0.&-/$3'&)&1&1, +853_557_600 141 * 0 0 * * 0 0 ACACGCCGCAAGTCACAACGAGAAGGCTAGGGACAAAAGACGGAGCAAAG 7-0'%()1&'&/65'1'/+,.*&&*17165:+0#-+'.&+''$-,$-&'# +853_557_1176 117 chrM 12324 0 * = 12324 0 GTGGACGGTGACGGTAACCCCCAGCCTTCCCAGGAAGCATATAGTGGGGG ;,<<=95:3==7<9@?9;9><<?:=A5@>=?6;<@=8><>:9:>79>@;> +853_557_1176 153 chrM 12324 37 49M = 12324 0 GCTTCATCATAGCCATAGCCTGATTCCTATTCAACACCAACACATGAGA []]]]]]]]]]]][[]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:10G38 +853_558_962 89 chrM 2448 37 49M = 2448 0 ATGTTGGATCAAGACATCCTAATGGTGCAACCGCTATTAAGGGTTCGTT \UV]]]]TS]]]XZ]]XFN]]]\]]]]]]]]]]]]]]\]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_558_962 181 chrM 2448 0 * = 2448 0 CTCCCCCCTCGGGGCCCTAACCTGCCGACCTCGCCCTATCGTTTACTCCT .)(0908:,&#6986$979'%<6.*772<<;>@=?=>;<>?=>>>==>?> +853_558_1569 77 * 0 0 * * 0 0 GCTACACACCCCCGAGCGGCCGGTGTAGTCGACGTGCGGAACGGTCGTAA (?16:=57:=779:995@=9?<?:>3<??=?339@?@;<@3?:8>><53? +853_558_1569 141 * 0 0 * * 0 0 TGGGGGGAATGCGTAAAGGAGGACCATGCCTCTGAGAAACACGCGCGAGA &&(?(?(8><;;;;<=;<7<;;8<:9;<88=<:<=::?8,6658/:,181 +853_563_1263 73 chrM 8090 37 49M = 8090 0 AATCTCAATCCAACAATGGCTAGTCCAACTTACATCAAAACAAATAATA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\X\][VYZSFM\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:9T39 +853_563_1263 133 chrM 8090 0 * = 8090 0 CTCGTACTGCGTAATATACAACCCCACGTCCGTTTGGCTTAACAGGAGCT @A>=?A@><?=A<==@A==?>>=;==>:1<<:?=<=<;=:?=<&:3<3): +853_563_1776 77 * 0 0 * * 0 0 ACCTTGGACCCCTCCGGCAGCATCGGACAAGACCGCTGGGTGGTCTAGGG =A><?@A:AAA@<>AA9@==?96AA=69;<>8A3>;86&?:;6&<>7??< +853_563_1776 141 * 0 0 * * 0 0 GGTCCTGCGGGCGGTTCCCAATTTCATCTGCCCGAACATAATAGGTAACC @=?=A>A@A>A?>@>>A@>A>?>1@>>>5@?@@8>?@&8><>97(:9:5) +853_584_1986 77 * 0 0 * * 0 0 ATAGCTTAACCGAATGCTTTAATAAATTTGCTGTTCTGAGGGCGTTACAC ,:)155*-9#7,;,)'232.:1(4,7#$3#97$%$,''+$,2(##,#%#( +853_584_1986 141 * 0 0 * * 0 0 ATGCCACCGCCTTACTATCTTTTTTGCTGACATCACGCCGTCTCTTGGTG ,#$)*)(($3,))$&#,(&#*))&$##&#(%+&'+$,,$2$&(#&#+,#$ +853_585_542 65 chrM 1916 37 49M = 580 -1336 AAAAGGAACTCGGCAAACACAAACCCCGCCTGTTTACCAAAAACATCAC ]]]]][]]][]]]]]]]]]]]]]]]]]YS[]]]\]]\MS]]]\TW\YTO XT:A:U CM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_585_542 129 chrM 580 37 49M = 1916 1336 AGCCTAAAACTCAAAGGACTTGGCGGTGCTTTACATCCCTCTAGAGGAG #(]]]]]]]]]]]]]]]]]]]]]]]]Y]]]]]]]]]]VV]]]Z]]YR\] XT:A:U CM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_585_1153 77 * 0 0 * * 0 0 GCTCACGCCAGTACCCCAAAGGTCAAGCCTTTCAGATTCCGGCCTGGTTC 87?><89<==9>868=95:49<>7;:96<,:=;-1::::64;58/9;;)1 +853_585_1153 141 * 0 0 * * 0 0 AAGACCAACGTAAATTATCCATTCGTACGATGCCCTGGGCATTGCATTCC <>689<?9>59781>9956245:44?6,16=466;77615206+=12$#, +853_611_981 77 * 0 0 * * 0 0 GACCTGAGCAGCAGTCGCCTGGAGCAAGCCGGCCGATATAAATCGATGCT 85275/655287&4<7<5889<176837797:835.6&44427/'48$71 +853_611_981 141 * 0 0 * * 0 0 GCACGGCAAGCGGTACGGGATACGTGAGGCGCGGTAAGCAAACCCGATCC ;=9===@::A><;<6><=;:@8;;==8<?:<<==<<3=<&>55=9;38=; +853_611_1451 69 chrM 593 0 * = 593 0 TAATAGCAGCATTCAACTTTCCTGACCTTTACTACTACCGAACCTATGGG 28#'%)5/,)46%-#28,4,/;00,'6,/'-;4%(#9,###:++'.9*## +853_611_1451 137 chrM 593 25 49M = 593 0 AAGGACTTGGCGGTGCTTTACATCCCTCTAGAGGAGCCTGTTCCGTAAT !S]]][TGDQ]WKRZWVRPLPYX[ZWTENZWXEFUX]PFRY[UUVS\QD XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:44A4 +853_626_841 89 chrM 10675 25 49M = 10675 0 CCTCCCACTCTTAGTCGCACTAATCTCTATCCAAAACCTAACAGGCTCA R]]]XZ]]]]RLZ]]]]]]]\T]]]]]]]][]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:15T33 +853_626_841 181 chrM 10675 0 * = 10675 0 CCCACCCGCCGTTCTAGGACGGCCACATTTTTATTAAGTCAGCCGGGATC ,)4,(85:>=?6@6>=7<=<>;>=<;?=A=<>>AA>@>A<>@?@A@?@AA +853_626_1431 77 * 0 0 * * 0 0 TGGGTCAATGCCCTATATGACATTAGGTTCGCGGTCGGTAACGAACAGCA 11-/8<:967:;959<<:5:<21781187057585;;*6-5$%8,2&%9$ +853_626_1431 141 * 0 0 * * 0 0 ATGTAGGTCCCTGACGGCCCCACGGAGGAACCTTAGCTAGGCCAACAGAA >5<:5897:<;4==:;7>;9;<979>89?<7;;:<9:6<49;8644.1+$ +853_628_1041 77 * 0 0 * * 0 0 TGAGCAAGACCCGTAATCTACAACGACCAGCGGTTATGACAATGTATAGC 978:5,7295,/889'529//,,:55227($128:'9*83,4&29&,%57 +853_628_1041 141 * 0 0 * * 0 0 CTATCGCTGATTTCACAGGAATCGGTCTTATAAGTTTGACCCCTTTTTTT <9)9<7839<:>/<<;>3'A9<36=<9$#9<8((<=8'&;97'7>;#2(8 +853_628_1976 117 chrM 620 0 * = 620 0 CGGACCCAGCAGTGTGAATCTGGGTAATCGCGCTGAGTGACAGCTCGGAA -&-,&&$9/84359:0;=1<7:::8?>.<9<:<:8A869=?=<;9=:<@< +853_628_1976 153 chrM 620 37 49M = 620 0 CTAGAGGAGCCTGTTCCGTAATCGATAAACCCCGATAAACCCCACCATC ON]][RQ]][W\]]]RR]]]YZ]\\]Z]]]]Z]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:17A31 +853_630_585 77 * 0 0 * * 0 0 TAGTGTCTTGGTTCGTGTAGAAGTGCCTGGCTTAGCTAAATCGAATTGCT 15/,/(/))=&,)>,):(>:<=/,)/3>:,,49/(6)/;/',.11.+9'4 +853_630_585 141 * 0 0 * * 0 0 GGCTGGACTATGCCGATGCGCGGGCACGGAGGGATCCGGGACCGGGAGGA &#$%#)%&#%#$$&(.##$##)-$&%%##&&.#&#$&-$#&'+'#$,,$& +853_630_1363 69 chrM 2399 0 * = 2399 0 ATAACAAAAGATTGAGGCCCATATTAGGTATTACCGCAAAAGGTGAGACG A@A=AAAA>A?@><?>@AAA8=:A@:?>A89:@>?=<?=@8A;;=59@8A +853_630_1363 137 chrM 2399 37 49M = 2399 0 CGCAATCCTATTCCAGAGTCCATATCGACAATTAGGGTTTACGACCTCG ]]]]]]]]]]]]]]]]]]]]]]]]]\]]]*,[]]IEZ]]]V[]]/1\SH XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_648_1618 77 * 0 0 * * 0 0 GAAAAGGGGCAGAATTTCGAGGGGAGTTAGGGCACAATCCCGCTAGCAGC &?,//&6(=77)):,)7.)933<)4%=:-8,831885//@3@:154',&3 +853_648_1618 141 * 0 0 * * 0 0 TTGATCCTATGCGGACGATTCCCGCGCTTCTGCAGTTGAGTTTTTTAAAA 1/(,/3<)+7%'/,%'&1)'09';/5.)%,)1&*111&+&5&0$4%$581 +853_649_292 117 chrM 1156 0 * = 1156 0 GGAATTCCTGGAGAGGGGGGTTGGGGGGTTGAGAAAAAGGGGGGTTGGGT ::4572;408<;82=:;?::5;9=:<::98=<57:<;;>?;;=>:;;>9: +853_649_292 153 chrM 1156 37 49M = 1156 0 CACTTAACTAAAACATTCACCAAACCATTAAAGTATAGGAGATAGAAAT VV]XR]\]]Z]]]]]]]]]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_669_616 89 chrM 8554 37 49M = 8554 0 TTCTACTAACTATCCTCGAATTCGCAGTAGCCATAATCCAAGCCTACGT YKKZ][YXT[\]]XZZYSM]]TNZ]WUXZ]]Z[]]]\TY]]][Z]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:31T17 +853_669_616 181 chrM 8554 0 * = 8554 0 GCCGAACATGCATGCAGGTGGTCAACTGTTCCTGTAGTATATCACTTTTG 3;>8==8=;>:A?:>A<@9>A=?=@<9<?>>A?@@>@@A>@<@>>=><AA +853_669_1548 77 * 0 0 * * 0 0 TTAGCTAGACATTAAACCATCCCTCTCATCTCCGGTTAACCCCGCCAGTT =;=<<=<<;=61:977/7;:96::<8.7<8;39:;976;;63)9;1+2:1 +853_669_1548 141 * 0 0 * * 0 0 TCGGGGACCGCCGCGCTCTGGCAGAGAGCTCCAGGGCGGGTGCCGGCAGG 8<977;>:=:;=:9><:9<;795<65>2>;;99=9/<4<8113/78,((& +853_678_1204 77 * 0 0 * * 0 0 GCAACCCGTACAAGTACAAGTACAAGTACAAGAACAAGAACAAGTAAAAA )=1=89;35:6:=:6;9A<5361?>1/6/=<'/;,A=&,:&>=/(5&A7& +853_678_1204 141 * 0 0 * * 0 0 CTTAAGAGAAAACCTGCTAGCAAACAAAAATAGGGGGGGAACAGAACGAG 737,88957/39486691$92<:77<:1060:9),4&/)),)(').4+,' +853_678_1908 69 chrM 14105 0 * = 14105 0 TAATAGGTCGATAACGTTAGAGACGTAAGAGGAAAGTAACTGCCGTCATG 8@?:57<:::?;=><=:<?:@=?>9=@=97?;>=7<7?:66<:;:9;=83 +853_678_1908 137 chrM 14105 25 49M = 14105 0 ATGTCATCATTATTCCCACGTGGAATCTAACCACGACTAATGACATGAA ]]][]]URX]]]WV]]UO\]]]ZXTRYNQX]]WVPNTOVXWUSRDLWEN XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:37C11 +853_718_1061 73 chrM 1329 25 49M = 1329 0 AGAGAACTTAAGCTAAGCACCCCGAAACCAGACGAGCTACCTACGAACA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]\Z]]]]]\V\]]X\ZUSU]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:43T5 +853_718_1061 133 chrM 1329 0 * = 1329 0 TGTCGAATATGCATTAAATAAGACTTGGCCGACTTGAAAAGTGTTGGCTT >A><@?@>@=>>;=<>@===<?=;>@A<=9:>;>=6==8<89:5>8>>;< +853_719_183 77 * 0 0 * * 0 0 ATTTTAGTTTACCTTCTTGAGTTCTACCTTAAACTTTGACCTCCCACCCC )/31.$%5'/#)',4#)'+$&7%%,&)#&&#%($$$$$%###%$'.##)' +853_719_183 141 * 0 0 * * 0 0 TAGAGAGCACTCCAGGGGAAGGGCCCAGAATCAAATAACAACTAATAGAA 99387)&%.,./'%682&.53/$)*65-440/#%$1$##.&$##2#,%$, +853_775_1932 73 chrM 5645 37 49M = 5645 0 CCCGAATAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTACT ]QHY]Z[TDO]]]][[]]]][]]]]]]]]]]]]]]]YY]\]]ZOKZUW] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_775_1932 133 chrM 5645 0 * = 5645 0 GTTTACGCGTCCCATTTAGCTTCGCCTATTTTCCCGTGGAGTGTCACCCA ((>3,,(/7&(A,3:5('4&<<?3;/,;8=()7@=:(3556(9:>/1317 +853_776_924 77 * 0 0 * * 0 0 GGATTGTTACGTGCGCCCTATACTGGAACTGACCAGTCATTGACTGGAGA -212<+87/3582?/4731,<2(A:956/<3148*:7/28069392;:7/ +853_776_924 141 * 0 0 * * 0 0 GTGGGGTTAAATAGTAGAAGCGCGGACAGGTCCACGTGGAGCGCGAAGAA 88;9855?888?<.;=:54875'67+1#9661#474.5374&#1:2*%88 +853_815_1179 77 * 0 0 * * 0 0 ATTCAATGGACTAAATCCGGGACCGAGGCGCGTCTGGCAGTCGACAGCTA 67827:>5597:=:<6<,224348025,71:879724,2(7/29)92222 +853_815_1179 141 * 0 0 * * 0 0 GCGGACTAGAGACGTCAACTAGGAGTAGCCGAGTTCAAAAGGGCAAAGGA <'#37,/*;1;7,;45-738,(/3,+.%21:/&93('(+7#*(,8(*(&/ +853_816_193 69 chrM 2616 0 * = 2616 0 GTGGTCTGAGTCAACCTGTAGATGTTTCGTGCACGATAACCCAGGGATTC ><><<;<@;9;>;=::>:==8<::=8>7<<:</=<8=@<?878>?<6?<6 +853_816_193 137 chrM 2616 37 49M = 2616 0 AGAAGCGCCCTCAAACTAATAGATGACATAATCTAAATCTAACTAATTT ]]]]]\]]]]]]]]]]]]]]]\\\]]Y]]]]]VY][X]]Z[NL[WMQT[ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_827_2017 89 chrM 5150 37 49M = 5150 0 TTTTAGTTAACAGCTAAATACCCTAATCAACTGGCTTCAATCTACTTCT FCHRRSLJSMOW\\Y[]YZOIDI][\]]]]\Y[Z\]ZUUZ[Y\]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_827_2017 181 chrM 5150 0 * = 5150 0 ATTTCGAATCGCACGCGCACACAGTTCGAGGATCCTCTTAAACGTTAGCG ++6=<9;<8<7935;5480<::;<;::8;8;7994=<8?:=;8;>::8?< +853_828_1138 77 * 0 0 * * 0 0 TTAAAAGTCATGAGCGTACAACACGTGCCATCTGTCCTTAATACCTATCA &)&$&)&&&&)&&%&&&&)&'&&&%&%&&%%&#&&&&&&&&&&%$&&&#& +853_828_1138 141 * 0 0 * * 0 0 GCACTATCGTGTGGCCCGATGTCCGGTCCTCCTCTCGGTTTTGGACCTGT &+&&)')$#,&,#&&')&%&'/&$$'#####&##%$$###&&##&$$### +853_843_799 73 chrM 16042 37 49M = 16042 0 GAAGCTGGACTTAAATTGAACGTTATTACTCCGCATCAGCAACCATAAG ]]]]]]]]]]]][\]]]VT]]]YZ]]]QR]]]]W]]]UV]]]OL]]TQT XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:27C21 +853_843_799 133 chrM 16042 0 * = 16042 0 CTACACCTGCGTATCGCCTCGAAAATGCTGTCACCTTAAGCACGTTTAGG @>>=A:AA=A9A>@4:=>:8:2?:@23;>;;9=1<=;=933'58>;9>:6 +853_843_1357 73 chrM 13593 25 49M = 13593 0 TCCACGAGTAACCTCTAAAATTACCAAGACCCCAACAAGCAACGACCAA ]]]]]]]]]]]]]]]]]]]]]\]]]]]VU]]]XJQ]]\UYYXTOX]ZQN XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:45T3 XA:Z:chrM,+13593,49M,3; +853_843_1357 133 chrM 13593 0 * = 13593 0 GTTTGCTAGAGTCGTATGTAGTCGTCGTTTCACGTGACCGGTCTACACCC >:AA8=?:??:?@>@?><>8<;<:>31=>:8(=8<74=,9;?5;724>48 +853_844_231 77 * 0 0 * * 0 0 TTAATTCTAGGTTTAAATGGAATTAAGATCCTGAGCCGGCCAAACCCGGG &&8151/>,/,/8,(?<=&('(?/;8&8))<?11=39%718,$,./9*89 +853_844_231 141 * 0 0 * * 0 0 GGGGGACAGGTGGAACTGGTAGACGGTACAAGGGAGAGCGCAGGGGATCA 4289*5)*(/(/+;=$/806&&*76&,.19&4754&2/9/92>3;)11:, +853_844_634 77 * 0 0 * * 0 0 TCTATCCACCGAAGTCAGTGTCTGAAGTCTTAGACACGTTCGAAACCAAT 7#56860817:11777)66,9&>7%;188/87,9&5608#9.764682%0 +853_844_634 141 * 0 0 * * 0 0 TCGAAAGCTCAACATCATCCGGCAGGGCGTAAAACTGGTCGCCCATTGAA >A;887A=2@9>;.;<67,;?::2:<;9#?<97/7<944:;):&*>90,6 +853_877_1974 77 * 0 0 * * 0 0 TTGCCGTGAGGCGATTGTACCAAGATAAAAACAAAATAACCTAAAAACAA *,*-4'#)74,',)(*##,#&#+#%##&#$'##%##)(#$%##$#(##'# +853_877_1974 141 * 0 0 * * 0 0 GCGTCCGCAAGGCGCGGAGCCTGAGAAAATTAGCCCGCGAGAATGACTAT 76187559,719324834789;;285501;<<65:<<:9;;99=<830+: +853_878_1093 69 chrM 2417 0 * = 2417 0 GGTTGGAGCGGGATAGCAAATGAGGATCCTGTCACAATCTCCCACTCCGA @@/&3,(,,5533/161?@57/1,3>3<<8>53)65=1)735,1A<;:8@ +853_878_1093 137 chrM 2417 37 49M = 2417 0 TCCATATCGACAATTAGGGTTTACGACCTCGATGTTGGATCAAGACATC OZ]]]Z]]YWI8J]]TJX]]N;K]]RAN]N;3@XZH9=NYH>T]UE!/X XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_887_1933 89 chrM 11695 25 49M = 11695 0 CAAACACGGCTCTCTCAAACTTTTAAAGGATAGGAGCTATCCGTTGGTC W\]]UJN][WZ\]]]OR]]]]]]]]]]]]]W[]]]TQZ[]JCQV\]]Y] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:6T42 +853_887_1933 181 chrM 11695 0 * = 11695 0 GGCGCCAAGCCGTCCGACGACACTTGCGATGTGGGGACAGAGGGTGTGAA ))%,&))3#=4:=;<=:>8<:9=;?@<=<<>?A==;9<:><<<7@>>?4< +853_888_1016 77 * 0 0 * * 0 0 TACGGGGGAAGGGCATCCCGACGTTCAGGGCTCGGCACCACCCCAGAGGA &(,,//6)))'<&/9&')/,,)(,&,&&9&<)/'3,),/&&)7:)(/),/ +853_888_1016 141 * 0 0 * * 0 0 TGAAGACCGGGGGTCCTATGATCAACCCAACCATGAATTGTCACAGACCG &.+/)(-#'('&5#405$2220&,/03$0+)9$(#)4%%&&-,#&#),'# +853_943_830 77 * 0 0 * * 0 0 TATTTTTGGAGTACCCTCCTGTACCAATAAACGTGGCCCCGCCGGGTGCA 61)5/6,34'20)%@#)#<%#$<)6+33&6&')4&0'0*(#'215.$'9/ +853_943_830 141 * 0 0 * * 0 0 AACCTACTATGCTCATGCTGGAGAAGAAAAACACCGGTGCCATCAAACCA (>,5+''#1):,#>#10#%2:%$3&(4#.#..#*39(#':6,$'%))##4 +853_944_156 117 chrM 2054 0 * = 2054 0 TTCGATCAGGGTACGACTGTGGAATTTTGAGTACTGCGTCTGGGACATTG :<3><=.:><?19>99.;>;67:>==<=A=?;::>=8<??>>>A<<==;; +853_944_156 153 chrM 2054 25 49M = 2054 0 TCACTTGTTCTCTAAATAGGGACTTGTATGAATGGCCACACGAGGGTTT PV]]\XV[]]]X[]]]]]]]]XW]]]]]]]]]]]]]]]]]]]]]\]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:10C38 +853_946_129 89 chrM 7799 37 49M = 7799 0 GTGATATGCCACAGTTGGATACATCAACATGATTTATTAATATCGTCTC ORU\]]\\V[]]]]]SS]]]]]]]]]\]]]]]]]]]]]]]\Z]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_946_129 181 chrM 7799 0 * = 7799 0 ACGCCACGCAGCGTAACGGCAAGCGCGGGCTCAGCACGAGACCTTGCGCC '&($%,4().)8%.4::%$'492/(88.$0:<,&,=7/.,7,$',:;<:8 +853_946_1345 77 * 0 0 * * 0 0 GCGCCCGCCGTCGGGCTGAAGAGGTCGGCCCCGACCGCCGTCACCACCAG 8386936:688649:8;80:8#,#/,#1#-3#,#)4)2#42)&&12'2%/ +853_946_1345 141 * 0 0 * * 0 0 TGGACCCGAATCCAAGCAGCCTGCGAACAAGGTAGGCGCCTGGTTAGCCA ?A<:<<A:=<:@6<><@:=>1@=<==<4:>:=<:>985::685;:2689; +853_967_1892 77 * 0 0 * * 0 0 TATAATAGGTAAGTTCTGCTCGGAACATATTTTACCCCATTCTGCCTACC 8;64;9:878<=<9;:8>5:;9<>:;>769&;1://6&8;):1890:471 +853_967_1892 141 * 0 0 * * 0 0 TCGGGCAGATGGCGTCAATATCCTAATCCCGCGGAGCGGGCAGTACGGAT :>;<<<@==;<<<>;2-#8>87'9><*%=@271=A6//=;)7,;=1).:5 +853_968_485 77 * 0 0 * * 0 0 CCCGGTCGTCCGTTTGCGGTAAACGGCAACACAAAAACCCCAACCTTACC <=?;>==@<;>;<=><<?:<=?>=;?<>>=:><>=>7;>>7;8<::8:>< +853_968_485 141 * 0 0 * * 0 0 GAATGGAGGCGTGCATTTGAAAACGAGGCCAGGAAACTTCAGTACAGGAA =<:@<;:>@AA;>A9?8===<=>9<4;=7:2==9;94?@>.,;&;,=<&0 +853_968_835 117 chrM 7621 0 * = 7621 0 GTGTCCGCGCCGGAGCCGATTAAGGATATTTTCCCGTATCCATGACTTAT -986=;>48<==:<==<5<<9>::<=>>8<;>;?>><>=@:>:?<:<;A6 +853_968_835 153 chrM 7621 25 49M = 7621 0 TACTACGGCCAATGCTCAGAGATCTGCGGATCAAACCACAGCTTTATAC ZLCP"!ATX[NN]]]RR]]]Y[]]]\]]]]SS]]]YZ]Y]USVY]UU]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:8T40 +853_968_1657 117 chrM 1985 0 * = 1985 0 CATAACAACATTCGGTAAGGTTTGATTAAAGTCAGCTCGTTGTTGGAAAA &%%)&')##$*,#$#$(#####,&#*%&$+##36<6<<8;99<9<88::; +853_968_1657 153 chrM 1985 37 49M = 1985 0 GAGGCACTGCCTGCCCAGTGACATCTGTTTAAACGGCCGCGGTATCCTA \TZ]Z]ZTY[[[]]]]Z\]]]]]]]]]]ZY]]]\Z]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_985_616 89 chrM 231 37 49M = 231 0 CCCCACGGGACACAGCAGTGATAAAAATTAAGCTATGAACGAAAGCTCG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:45T3 +853_985_616 181 chrM 231 0 * = 231 0 GGTGGGTTGATATCGCGTCACTTAGGGTGGTAAGGTATGGTATCACAACA )$)($$#1&,&,#)#1&6=3;<=?;568=:;>@868@@@4>=@>>8A?@= +853_985_1608 77 * 0 0 * * 0 0 TGTAAGCTATTGATTATACGCCCAGATGGACAATCGACAGGAAGGGAGGG <:99:7<::<:>,<<;=:<97?5/:/;:2::::58<921;>:::<=19=< +853_985_1608 141 * 0 0 * * 0 0 CCTCGAGTAAGGAAGAGAGAAGGGTACGATTATAATCCTCCCAAAACGAG @798;<9::<9;<:=?9>8;=9:97?68?=;1<:58:3/97%2)%-)#&# +853_991_1890 73 chrM 3733 25 49M = 3733 0 ATGTCTGACAAAAGAGTTACTTTGATAGAGTAAAACATAGAGGCTCAAA ][]RO]]TDABJVW]UU]XURWUR]]]]]SO][IHW1(NUSD!!H\6$: XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 +853_991_1890 133 chrM 3733 0 * = 3733 0 AGGGGGGCAAGTTCAGGTTAATATATAAGTTTAGCCCAAAAATTACCTTC >,>)&,(->>.32(<@>1&=)/:/)>/&+((>,;)3;&1>=;,%63=7:9 +853_992_1006 73 chrM 5367 23 49M = 5367 0 CATCAACCGCTGACTATTTTCAACTAACCACAAAGACATCGGCACTCTG ]]YT]]W\\U]YOT]]]]]]ZV][]]RT]][Z]][]][\ZUSYTRXQPY XT:A:U CM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrM,+5367,49M,3; +853_992_1006 133 chrM 5367 0 * = 5367 0 CTGAATCAATGAGCCCACCACCACCCAAATGCTACCTACAGCAGACAGAG ###(#$#$0###1(###+,'##*##%#%##&##0####$&'#*%*'%#+# +853_992_1044 77 * 0 0 * * 0 0 TGCGTCGTGCGCTACTCCGTATTCCCCGGTAGGGGAACCTCGTAGGACGG &/5-<)&(':4+<3838&&4&7'1-17&,/11044//$&,%8,%$4,-%# +853_992_1044 141 * 0 0 * * 0 0 ACAGAGGCCCACCTGCTCACTCGGACAGCCGCCCACGATGAGCACTGCTC :70.7143#46<257:>/,488938=96958:/75;29)715689/8(&+ +853_993_143 77 * 0 0 * * 0 0 CGGAACGAGGGAGTATAAGCATAGTCCCGCATCAATAGACCTATGGATTT <788::9:8:77>3,6;<768:?:39<=:611>9751:;8:55895(>;3 +853_993_143 141 * 0 0 * * 0 0 CGGGGCTCCAAGCTCCCCATCGAGAGACTGGGGTCCGTACACCAGACTCG ;759<65;<>97<::==@/8;6;6<:;85==1::;;:97<,9=937:79: +853_996_488 77 * 0 0 * * 0 0 TGCCCCGTCCACAAAACTCTAGACACACGCCGACCTTGGCAAAAGAAGAA .&'6,#*<(%'8('(,8.4'.1*9)81-0(*0$&2+-)5,0/,1*21#%* +853_996_488 141 * 0 0 * * 0 0 GCGTACCTGAACTTGGCCATTAAGAGCAGAGCCACCAGTGTCGCGGGGGC &-'*/*/8)$2(,.22&10&,))0/+,$38'(531,)2)'((%'6'(-1. +853_996_1656 113 chrM 16037 25 49M = 1018 -15019 AAATTGAAGCTGGACTTAAATTGAACGTTATTACTCCGCATCAGCAACC YVP/1W[[\]YY\]\\]]]]ZT[]][[]]]]\]]]\Y[[ZWY\Y\]]]] XT:A:U CM:i:1 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:32C16 +853_996_1656 177 chrM 1018 37 49M = 16037 15019 AGTATACCGGAAGGTGTACTTGGATAACCAAAGTGTAGCTTAAACAAAG ]]]\]\]UQ]]][]]][]]]]]XW]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_997_740 77 * 0 0 * * 0 0 GGGGGGAGATCGGTCGTCCTCGCGATTCGACGTAGGGAAGGAAACCGAAC 9&5;'.1')&(4&2&(,'))=&,,-.&+,&)(.,7/2)(4/-'95,4,<3 +853_997_740 141 * 0 0 * * 0 0 GTTATCGGGGGTTTTCGCAACATAGCTTTGGTAAGCATTTCTGCACCCCT (=('(,(,+<=3?<;::97<;::9<;8:4;<;9::=38:;?=;1<99087 +853_1026_2018 77 * 0 0 * * 0 0 CGGTCTCCGTACGACGATACGCTTTACGGTATAAGCCAACTGGAGTGGGT 6<7=7;6,7=(6928:#;#.8#$'7###4(%/#$.'')0'3$(&)&(2** 853_1026_2018 141 * 0 0 * * 0 0 GGAGCTATTGCTCAGAGGCCATGTGGTGTCCGTTGGCGTTTGTGCTGGTG 9<#64>;#659;#%61;'11&<+7#9=-3(3:/3342&)361&&(34#%, -853_1026_2018 77 * 0 0 * * 0 0 CGGTCTCCGTACGACGATACGCTTTACGGTATAAGCCAACTGGAGTGGGT 6<7=7;6,7=(6928:#;#.8#$'7###4(%/#$.'')0'3$(&)&(2** -853_1027_1303 137 chrM 3893 37 49M = 3893 0 GGGCCCATACCCCGAAAATGTTGGATTACACCCTTCCCGTACTAATAAA ]]]]]]]]]]]]]]]]]]]TS][QV]]][Z\]YXTWWYYQXXYML[TK' XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 853_1027_1303 69 chrM 3893 0 * = 3893 0 GAATTATTCTTTTTCGGCTTACTATACACTTTACTAAAATCCTTAAATTA *,10,,;0##3##&#%&#&(%##&##$&#%####%%&$#&#####$##$$ +853_1027_1303 137 chrM 3893 37 49M = 3893 0 GGGCCCATACCCCGAAAATGTTGGATTACACCCTTCCCGTACTAATAAA ]]]]]]]]]]]]]]]]]]]TS][QV]]][Z\]YXTWWYYQXXYML[TK' XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1055_941 77 * 0 0 * * 0 0 TCGTTATGGAATTATCGATTCCGCTAAGCACTCGGACCCCAAACGTACCT AA@<@@AA=?@AA?@A@@@@?@A8>>@A><>77=>>=>=>>?=A:<1>8@ 853_1055_941 141 * 0 0 * * 0 0 TCTTGAGGTTGCGTAATTCACGGTGAAATAAGGAATAGTATCGTATCGAA 5&1)>3175@6//;@:3/)=5&$#&&&&&&&%&$'&&%&)&&$&&&&/&) -853_1055_941 77 * 0 0 * * 0 0 TCGTTATGGAATTATCGATTCCGCTAAGCACTCGGACCCCAAACGTACCT AA@<@@AA=?@AA?@A@@@@?@A8>>@A><>77=>>=>=>>?=A:<1>8@ 853_1056_37 117 chrM 1193 0 * = 1193 0 AAAGCAAAGTGGGGGGTAGAGAAAGGGGGGTTGGGGCACTAGTCGATAGC (&47&&,&,&-*):164,5511;9;6/5;:0':15&,;;24'06/<6:): -853_1056_37 153 chrM 1193 25 49M = 1193 0 GGAGATAGAAATTTTAACTTGGCGCTATAGAGAAAGTACCGTAAGGGAA !!(BOW05\WSGGRNOPLLNRX]]XY]]]]OP]XVVW]]]]]]]XU\]] XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 +853_1056_37 153 chrM 1193 25 49M = 1193 0 GGAGATAGAAATTTTAACTTGGCGCTATAGAGAAAGTACCGTAAGGGAA !!(BOW05\WSGGRNOPLLNRX]]XY]]]]OP]XVVW]]]]]]]XU\]] XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 +853_1075_559 77 * 0 0 * * 0 0 TCCACATGACCTCTACAACAGCCTAAAAGTATCAAGCGGCCCAGGTCAAA 86*0.#&1*,4#2'&/'%1)152+02'9#))&)%&*&'%+*0#'#&-.$0 853_1075_559 141 * 0 0 * * 0 0 TGAGCGCCACAGAGGGGAGTGAAACCTCGCTTCTGTATATTAGGGTAGGG #&5*&&(1&%&)2$,=(5+;9(0$2:&)%%$)1#:(#)2*,(',)#(,,# -853_1075_559 77 * 0 0 * * 0 0 TCCACATGACCTCTACAACAGCCTAAAAGTATCAAGCGGCCCAGGTCAAA 86*0.#&1*,4#2'&/'%1)152+02'9#))&)%&*&'%+*0#'#&-.$0 -853_1076_58 137 chrM 2475 37 49M = 2475 0 CAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAAAGTCTTACGTGAT ]]\\\]]IIUW]JJ\\]YYYZ]\\]][USZZZQOWX]YTRQ\OIPQWNE XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 853_1076_58 69 chrM 2475 0 * = 2475 0 ACAGGTCTAAGCCCGTAAAGTCGATCACGGACGGGTCGGCTTATATAGGC 78=89::;::8<:3<<;<9<8948;73:<<59::8:96:=(67881599, +853_1076_58 137 chrM 2475 37 49M = 2475 0 CAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAAAGTCTTACGTGAT ]]\\\]]IIUW]JJ\\]YYYZ]\\]][USZZZQOWX]YTRQ\OIPQWNE XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_1091_1124 77 * 0 0 * * 0 0 TTGCAGTCCTGTGCGGGGCGGCGGATTCGCTGCCTGTGCTGGGGGGTGGG 6;;;<===<@9?4:A<>9=>8;=<6=>/5578))2.&''(&%$$-+./$, 853_1091_1124 141 * 0 0 * * 0 0 GGAAAGTCAAAGGAGAGAATCGGCCCTGGAGGTGGCGTAAGGCGGTGTCC =?>@A??>@<<>9;9@>5;<A;??>A?:<>?;5:9;674;<518:5$=09 -853_1091_1124 77 * 0 0 * * 0 0 TTGCAGTCCTGTGCGGGGCGGCGGATTCGCTGCCTGTGCTGGGGGGTGGG 6;;;<===<@9?4:A<>9=>8;=<6=>/5578))2.&''(&%$$-+./$, 853_1092_230 117 chrM 197 0 * = 197 0 GATACTTCGTGCCTGGATTGTGCCTTTCTTTTCTTGGATCTTTTCGTCTC 0)/8'/785%+59539,67%1974*)/;5+:2=7(9-=2,//;3&3,>)1 -853_1092_230 153 chrM 197 37 49M = 197 0 ACAAAGTAGCTCATAACACCTTGCTCAGCCACACCCCCACGGGACACAG JX]YUTTOU]OO[]]]URUY[XY]Y[]][]]]]][[Z]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:1G47 -853_1094_1720 137 chrM 7802 37 49M = 7802 0 ATATGCCACAGTTGGATACATCAACATGATTTATTAATATCGTCTCAAT X[]]]]VRSYXRY\]]]]\]XPRTTYXUSRUVYILXOSSMOQSLTSNXU XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_1092_230 153 chrM 197 37 49M = 197 0 ACAAAGTAGCTCATAACACCTTGCTCAGCCACACCCCCACGGGACACAG JX]YUTTOU]OO[]]]URUY[XY]Y[]][]]]]][[Z]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:1G47 +853_1094_215 77 * 0 0 * * 0 0 GCGAACAGGGACGCAGCGGTGAACGATTTTCGCCTCCCTCACCGACCCCA 8;8.,:/*2./:*#3.2+2'(82&)$&266#4)(2/'*%1%$4'1*-:.3 +853_1094_215 141 * 0 0 * * 0 0 GCCTTTCTCCCTCTCCTCTGGTTTCGCCTTGGAACAAGCGAAGAACAGGC 4)&/-,1&$77/,.114('(1+)%'*0#,3$$#,#'&(#$$)#,$%3,#+ 853_1094_1720 69 chrM 7802 0 * = 7802 0 TCTAAGTAAGCCTAGCGTCCCTCTATGCTGTAGTGACCAGAGAGATTGTC 730,<8814/7479>7<7/1=;/:)=2;;,<<<;55=;7<==8/,:;&7' -853_1094_215 141 * 0 0 * * 0 0 GCCTTTCTCCCTCTCCTCTGGTTTCGCCTTGGAACAAGCGAAGAACAGGC 4)&/-,1&$77/,.114('(1+)%'*0#,3$$#,#'&(#$$)#,$%3,#+ -853_1094_215 77 * 0 0 * * 0 0 GCGAACAGGGACGCAGCGGTGAACGATTTTCGCCTCCCTCACCGACCCCA 8;8.,:/*2./:*#3.2+2'(82&)$&266#4)(2/'*%1%$4'1*-:.3 -853_112_119 141 * 0 0 * * 0 0 TCCCGGGACAACGGAATTAACAACCCCCGGGTGGAATCGGGTGGGAGGCG ))&)994&,/1(+-+.-('(02)145,.&42,#&).,&(-0.%,',%:(0 -853_112_119 77 * 0 0 * * 0 0 CCTAGGATAATACGCGGACAGGGGAGCTCCGGGGGGAGGGGACGGGGCGG 7)&8327,(41&&),%1/)%+242(1,)')&15,)&05#$50,$$87&.$ -853_112_253 137 chrM 1041 37 49M = 1041 0 ATAACCAAAGTGTAGCTTAAACAAAGCATCCAGCTTACACCTAGAAGAT WTVVUWTQYWRMT][YTWNITY]ZSW]]]RU\Z\]]]YTWVSTWX\ZM> XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_112_253 69 chrM 1041 0 * = 1041 0 GAACGCTTATGGGGTCCGCTAGCTAACGCCGCCTGGCCAATAACTATAGT ;9;97857&:;6;&983;4=83/,::2=,8;7(&<;/8+275(/9-1&(; +853_1094_1720 137 chrM 7802 37 49M = 7802 0 ATATGCCACAGTTGGATACATCAACATGATTTATTAATATCGTCTCAAT X[]]]]VRSYXRY\]]]]\]XPRTTYXUSRUVYILXOSSMOQSLTSNXU XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_1138_1582 89 chrM 7649 37 49M = 7649 0 GATCAAACCACAGCTTTATACCAATTGTTCTTGAACTAGTTCCACTGAA \]UPSS\RLW\]RPYY][Y]\]]ZY\\[Y]]]]]\]]]SS]ZVW]]][\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:28C20 853_1138_1582 181 chrM 7649 0 * = 7649 0 TCAGGAGCAATGGGTCATAGCGTTGGTGTTGTTGGAATCAGTGGGAACGC 86<8;?5:99>6<>/@=9=8==7=@=<7;<><:?=@?;>@<9<=?@@@=? -853_1138_1582 89 chrM 7649 37 49M = 7649 0 GATCAAACCACAGCTTTATACCAATTGTTCTTGAACTAGTTCCACTGAA \]UPSS\RLW\]RPYY][Y]\]]ZY\\[Y]]]]]\]]]SS]ZVW]]][\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:28C20 +853_1139_914 77 * 0 0 * * 0 0 CTATGAATCAATTTGAATAGTCGTCTTAAAATATGGCACCAAAAGCGATC <(),)&6:$&>'8)('$&5)$*'#+'1#.6,)#$1&('',&6&+',&&+/ 853_1139_914 141 * 0 0 * * 0 0 GAACTAAAGCCAACGCGGCAAACCTTGTGCAGCCACCGCAAAACCACACC )4#%&+2%$,/$##*000$&.2(,'',,#'&#%%)%%#+,'-&$,$*&)* -853_1139_914 77 * 0 0 * * 0 0 CTATGAATCAATTTGAATAGTCGTCTTAAAATATGGCACCAAAAGCGATC <(),)&6:$&>'8)('$&5)$*'#+'1#.6,)#$1&('',&6&+',&&+/ +853_1144_824 77 * 0 0 * * 0 0 GCTCGCTCTCAAAGGGGAGAGGGAAAGAGCTGCTGGGCTGGGGGACCGTT '(')%&,:4'.+4.:4(/028:9;:;01:;/6-(8344)/#++1),&9)& 853_1144_824 141 * 0 0 * * 0 0 ACCGCAACATGCTGAATATGACCTAGCAAACTACGAACAATCTGAACCAC '8'..1/#3)()&$%'/(&&#((('$1(.#+))',$)%(#(+),,,#$.) -853_1144_824 77 * 0 0 * * 0 0 GCTCGCTCTCAAAGGGGAGAGGGAAAGAGCTGCTGGGCTGGGGGACCGTT '(')%&,:4'.+4.:4(/028:9;:;01:;/6-(8344)/#++1),&9)& 853_1145_305 117 chrM 13509 0 * = 13509 0 GGCCAGATGTGGGCGAGCATTCCTGTCAGTACTCAAAGGTGTAAGACATC <=;>=883>6=>;=:8==;=?>;=<==<>><=>=:9;;<=?>><>:<=?= -853_1145_305 153 chrM 13509 25 49M = 13509 0 TAATTTCCACCCAAAAAGGCCAAATCAAATTATATTTCCTCTCATTCCT SY]#)]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:19A29 +853_1145_305 153 chrM 13509 25 49M = 13509 0 TAATTTCCACCCAAAAAGGCCAAATCAAATTATATTTCCTCTCATTCCT SY]#)]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:19A29 +853_1148_420 89 chrM 5650 37 49M = 5650 0 ATAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTACTTCTTC UVVVFA<JWQXSU\RPSWOJP09YPT]]XSZ]]]JO\]]XX]]]UUZ\# XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1148_420 181 chrM 5650 0 * = 5650 0 TGACCCTCGGGCCAGGCGACCTATATGTCCGTGCATGTCACCTAGCGCAG =<:5;<1:,:=8;==?9;><>><3@><;@>@==A@>?:?@?=<A@=@>>? +853_1148_1437 77 * 0 0 * * 0 0 TTTTCCAGGTGGCGTGTCCTTAGCAGGCACTGTGATGCTCCTTGTTTAGA 3875((77'%//28,(884:9/(;$59(03%%(5$'%+)$)&-.7513(4 853_1148_1437 141 * 0 0 * * 0 0 TAGCGGGGCGTAAGAAAGTAGAGTTGCTGGAAGATACGGGAAAAGAAGAG 59)&&;')&&4,1)&/;&(-)1&/(6/,0,1<<,:<5(748':;9==/7< -853_1148_1437 77 * 0 0 * * 0 0 TTTTCCAGGTGGCGTGTCCTTAGCAGGCACTGTGATGCTCCTTGTTTAGA 3875((77'%//28,(884:9/(;$59(03%%(5$'%+)$)&-.7513(4 -853_1148_420 181 chrM 5650 0 * = 5650 0 TGACCCTCGGGCCAGGCGACCTATATGTCCGTGCATGTCACCTAGCGCAG =<:5;<1:,:=8;==?9;><>><3@><;@>@==A@>?:?@?=<A@=@>>? -853_1148_420 89 chrM 5650 37 49M = 5650 0 ATAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTACTTCTTC UVVVFA<JWQXSU\RPSWOJP09YPT]]XSZ]]]JO\]]XX]]]UUZ\# XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 -853_1149_1929 137 chrM 8987 37 49M = 8987 0 TGCTGACCACCCACAGGTATCCACCCCTTAAACCCCCTAGAAGTCCCCT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]VY]]Z]]]ZOTJJYTNV]]TO XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1149_239 77 * 0 0 * * 0 0 CTGACCGCTATAGCGTGCGGAACAGGGGGGCCCTCTTCAAGCGGGGAGGG 3<51,*1*)88&%:1%+)%8'$//0.15*4';195/&//'9;(&38)7&- +853_1149_239 141 * 0 0 * * 0 0 TCCACTCGGCATCTCTTGCGACCGCTTGAGGGGTCTAGAAAAGCCCTGGG $$+,#2#',+*%0'',#$*4(8#'0$5&#+0/4+*0+5%&(2)#&3/('+ 853_1149_1929 69 chrM 8987 0 * = 8987 0 CTAGTACCACCATTGTAGTAACGAGGGCCGTATTTAGGAGGGGCGCAAGG ><:<=98>;;>=<>><@@==>=A=<<;><;>:><>9<?<:><<<;>;<>< -853_1149_239 141 * 0 0 * * 0 0 TCCACTCGGCATCTCTTGCGACCGCTTGAGGGGTCTAGAAAAGCCCTGGG $$+,#2#',+*%0'',#$*4(8#'0$5&#+0/4+*0+5%&(2)#&3/('+ -853_1149_239 77 * 0 0 * * 0 0 CTGACCGCTATAGCGTGCGGAACAGGGGGGCCCTCTTCAAGCGGGGAGGG 3<51,*1*)88&%:1%+)%8'$//0.15*4';195/&//'9;(&38)7&- +853_1149_1929 137 chrM 8987 37 49M = 8987 0 TGCTGACCACCCACAGGTATCCACCCCTTAAACCCCCTAGAAGTCCCCT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]VY]]Z]]]ZOTJJYTNV]]TO XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1231_1371 77 * 0 0 * * 0 0 ATATCTCCTTCCATTTCTGCCTGCGCCTATGTCCTTTTAGGGGTGTTTGC ,/0,.#'#$954),&#-',;.*##*(*.'82#$#2*$*#(%%&###,'#+ 853_1231_1371 141 * 0 0 * * 0 0 CGCAACGTTCGTTACCCCTGTGTTTATACCTGATTTGAATTTAATCGAGG #:2+%%-,#,-/''''#&**+.#%&,*)#*#1$$&+%$%'%&3$'/$'(/ -853_1231_1371 77 * 0 0 * * 0 0 ATATCTCCTTCCATTTCTGCCTGCGCCTATGTCCTTTTAGGGGTGTTTGC ,/0,.#'#$954),&#-',;.*##*(*.'82#$#2*$*#(%%&###,'#+ +853_1231_1635 89 chrM 3568 37 49M = 3568 0 AACATGTTCCTTCCTATGAATCCGAGCATCCTACCCACGATTCCGATAT YWRUYRTQEFQZ\WY][SUZZYX[]]TQ\WY]VV[]]ZW[]\OR]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 853_1231_1635 181 chrM 3568 0 * = 3568 0 CGCATGTCAATCTGGTCCTTCATGCAAAATCTTGACTGAATTAATAAAAG 37):115'<654068;15:98:,67:74<9967;=<65@9:9;?;<;=>< -853_1231_1635 89 chrM 3568 37 49M = 3568 0 AACATGTTCCTTCCTATGAATCCGAGCATCCTACCCACGATTCCGATAT YWRUYRTQEFQZ\WY][SUZZYX[]]TQ\WY]VV[]]ZW[]\OR]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 853_1232_516 117 chrM 1292 0 * = 1292 0 GTTGGGGGGTTGAGGAAGAGGGGGGTTGGGGGGTTGAGAAAAAGGGGGGG 4),%/-61&)0/'&&&4&&&,4/&-*5)&)/5.&&)+(&'*(,&'))685 -853_1232_516 153 chrM 1292 37 49M = 1292 0 CTTTTGCATAATGATTTAACTAGAATAAACTTAGCAAAGAGAACTTAAG !8[04XW]]ZZX]][XV]ZW]]]]]]\]]Z]]]]]]Y]]]\V[]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1232_516 153 chrM 1292 37 49M = 1292 0 CTTTTGCATAATGATTTAACTAGAATAAACTTAGCAAAGAGAACTTAAG !8[04XW]]ZZX]][XV]ZW]]]]]]\]]Z]]]]]]Y]]]\V[]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1232_940 77 * 0 0 * * 0 0 TAGGGCTAAGTGTCGTGGCTGGCCCCCAGCCAAAACTTTCGCTTCTACCC >175()<>>1&','95'/A&3,/?315@,&/',,,&&5,3/&1)&1'1<' 853_1232_940 141 * 0 0 * * 0 0 GTTTTCCTGTGCCCGAACTCTTGGGGATTATTCGCCCCGAACGGTTCGTA //&)3=65://7&/,1@15,)),33=1,<),,3(3?))//,),)6,39)' -853_1232_940 77 * 0 0 * * 0 0 TAGGGCTAAGTGTCGTGGCTGGCCCCCAGCCAAAACTTTCGCTTCTACCC >175()<>>1&','95'/A&3,/?315@,&/',,,&&5,3/&1)&1'1<' +853_1236_169 73 chrM 3979 25 49M = 3979 0 CTAGGAACTATAATCGTTATAATAAGCTCACACTGACTAATAATCTGAA ]]]JJRQNV]]WUOOYKR][$"!!SSXWIKTXXW[TNRGL]95KADHGM XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 853_1236_169 133 chrM 3979 0 * = 3979 0 GCCTCCAGCTTATATACTCGAGGAGGGATATATTGAACATAGGCTGGTTG 8>9<:6<,.&99864<;>2);=52,:<59/<67<*;<:&+9:6&2<<<:) -853_1236_169 73 chrM 3979 25 49M = 3979 0 CTAGGAACTATAATCGTTATAATAAGCTCACACTGACTAATAATCTGAA ]]]JJRQNV]]WUOOYKR][$"!!SSXWIKTXXW[TNRGL]95KADHGM XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 +853_1237_10 77 * 0 0 * * 0 0 AACAGATAATACGGCCTGCTTTGAGGGCTAACTAAAATGGGTCAGCAAAC (,,;/)&5/()&=)3(&;<:3)=3=)/=&=-.8,9;<=5;,&141<,;/< 853_1237_10 141 * 0 0 * * 0 0 TAGCATGCAGACGAGACGCTCCATTTACGGTCGAGAAGTTTAGGTAAGTT 6/<779>86=-4886:>:37==:1;729=2</===6:;,6/;66)((&14 -853_1237_10 77 * 0 0 * * 0 0 AACAGATAATACGGCCTGCTTTGAGGGCTAACTAAAATGGGTCAGCAAAC (,,;/)&5/()&=)3(&;<:3)=3=)/=&=-.8,9;<=5;,&141<,;/< +853_1242_1158 73 chrM 2264 37 49M = 2264 0 CAATTTCGGTTGGGGTGACCTCGGAGAACAAAACAACCTCCGAGTGATT ][X]]]]]]]]]]X]]]\]]]]]]]]]]]]]]]]]]]]]]\OTRACKW] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 853_1242_1158 133 chrM 2264 0 * = 2264 0 GCCTTTCGAAGAGGGCCAGCGTCTACCAGACTAGCTTCCCTAGGAACAGC =@<=;@@<>==A>>@>=>@=A:>@>???=&;)19(,,&+%+&(&3'3&,& -853_1242_1158 73 chrM 2264 37 49M = 2264 0 CAATTTCGGTTGGGGTGACCTCGGAGAACAAAACAACCTCCGAGTGATT ][X]]]]]]]]]]X]]]\]]]]]]]]]]]]]]]]]]]]]]\OTRACKW] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1243_871 77 * 0 0 * * 0 0 CTGCGGGTAACGGGATGGAGAACGATATTTGATGAAGGTGGACCAACCCG 1),)*=3/4=,9<?,%46//./+1,&1/1,)<)8&,/7(>79,);668); 853_1243_871 141 * 0 0 * * 0 0 TCTGAGACGGCAAGAGGTGAATCACAGATGGGCGTAAACCATTAACTTGC 1&?()&,1>>,(=&:88>/>7=1:77=118:75/988:57283/&))'** -853_1243_871 77 * 0 0 * * 0 0 CTGCGGGTAACGGGATGGAGAACGATATTTGATGAAGGTGGACCAACCCG 1),)*=3/4=,9<?,%46//./+1,&1/1,)<)8&,/7(>79,);668); +853_1265_969 77 * 0 0 * * 0 0 CGGCTGGGGGGGCGTGATGCAACGTTAAAGGGAGGCTCTTGTCAAGAGAA $<)'(')1.8:)()8(,&<//55,'&3,))'846164.001-/+381/72 853_1265_969 141 * 0 0 * * 0 0 AGACTCGGACGGCCGAGGTTACCCCCTTGTTCCCCGGGCGAGTCTACCCC &82,4,54'),%&)'0('.9.$9',;1(#%88)*#8&(,%19,#,871*# -853_1265_969 77 * 0 0 * * 0 0 CGGCTGGGGGGGCGTGATGCAACGTTAAAGGGAGGCTCTTGTCAAGAGAA $<)'(')1.8:)()8(,&<//55,'&3,))'846164.001-/+381/72 -853_1266_828 113 chrM 105 25 49M = 1042 937 AATAAAATTACACATGCAAGTATCCGCACCCCAGTGAGAATGCCCTCTA /3[X]KFLS]]]]]]]]]]][Z]]]]]]]]]]]]]][]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:25 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:4G44 -853_1266_828 177 chrM 1042 37 49M = 105 -937 TAACCAAAGTGTAGCTTAAACAAAGCATCCAGCTTACACCTAGAAGATT \Y]\]]]]]][]]WY]]]]]]]]]][[]]]]]]Y]]]]]W]][T]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:25 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1266_828 113 chrM 105 25 49M = 1042 937 AATAAAATTACACATGCAAGTATCCGCACCCCAGTGAGAATGCCCTCTA /3[X]KFLS]]]]]]]]]]][Z]]]]]]]]]]]]]][]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:4G44 +853_1266_828 177 chrM 1042 37 49M = 105 -937 TAACCAAAGTGTAGCTTAAACAAAGCATCCAGCTTACACCTAGAAGATT \Y]\]]]]]][]]WY]]]]]]]]]][[]]]]]]Y]]]]]W]][T]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1267_170 77 * 0 0 * * 0 0 TGAAATCGGGTTTATGCCTATACCGAGACCGGGGACCAACTAGGGACGGG 30:65905%/#52:2&3(7,532).4;,,+&3$+-(2)50*&0%'&1(1' 853_1267_170 141 * 0 0 * * 0 0 GGAGTGGAGGTGGTCGCCCACCAAAAGGGCCAATTCCGTCGCCATCGCCT &%%#+,4,##,,8.,%/#'*#72&-,.#*2123-&,4$2#,2(.(,,',# -853_1267_170 77 * 0 0 * * 0 0 TGAAATCGGGTTTATGCCTATACCGAGACCGGGGACCAACTAGGGACGGG 30:65905%/#52:2&3(7,532).4;,,+&3$+-(2)50*&0%'&1(1' +853_1277_1774 73 chrM 1180 37 49M = 1180 0 CCATTAAAGTATAGGAGATAGAAATTTTAACTTGGCGCTATAGAGAAAG ]]]]]]]]]]]]]]]]]]]]]]TQXY]]XQZ]]][\\]ZVY]]YWX]]O XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 853_1277_1774 133 chrM 1180 0 * = 1180 0 TCCCTTGACAACACGAATATAGCCAATTCTGCACTATCCTAAACATCACC AA?=??>;<>>@;>A@>:?<,3%&1,,(89'92+4&0)-5+&1,/15%/, -853_1277_1774 73 chrM 1180 37 49M = 1180 0 CCATTAAAGTATAGGAGATAGAAATTTTAACTTGGCGCTATAGAGAAAG ]]]]]]]]]]]]]]]]]]]]]]TQXY]]XQZ]]][\\]ZVY]]YWX]]O XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1278_1160 77 * 0 0 * * 0 0 AAGAGCAATGGGAATGATCATGCCGCTGCGTAATGGAATGGAGTGGAGGG A=<<@AA?>@@@?;?>:>A?>?AAA@7<<,,&//1(+)&9+&&&85(1&9 853_1278_1160 141 * 0 0 * * 0 0 GTAAATCCGACCCCTAAAGAGCCAAGAACCCTAACCAAGGGTCAAAAGAA ;AA==A?:A>?A<?;AA=;79?8><7@<:::8<=97=@9<953=A<8,>6 -853_1278_1160 77 * 0 0 * * 0 0 AAGAGCAATGGGAATGATCATGCCGCTGCGTAATGGAATGGAGTGGAGGG A=<<@AA?>@@@?;?>:>A?>?AAA@7<<,,&//1(+)&9+&&&85(1&9 +853_1280_287 73 chrM 8561 37 49M = 8561 0 AACTATCCTCGAATTCGCAGTAGCCATAATCCAAGCCTACGTATTCACT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y]]\] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:24T24 +853_1280_287 133 chrM 8561 0 * = 8561 0 GATCGTTCGCGAGCATCTGGCTTTCATGTATCTGAGGCAGCGCAGAGTGC >?A??>A>@A?>@><>?><@>@?<@=@8@;@:>;<>/=6<8193@86,/) +853_1280_1640 77 * 0 0 * * 0 0 TGGTAAGACTCCTCCTTTCGGCCCCCAACCCCCCCCCCAACCGAGCTGCC A;?<;<@<<>>A=44:??:<>:=74<:>48;=583==9/8=9:228122( 853_1280_1640 141 * 0 0 * * 0 0 GTTTCACCCCCGTCGATACATACTAAGACCTAACGTGCCCGAACAAAACG 8>*2#8+#%#3/##&=:#$.=2#+1<6&(%@1#($>)#'#8(&$+=&&$' -853_1280_1640 77 * 0 0 * * 0 0 TGGTAAGACTCCTCCTTTCGGCCCCCAACCCCCCCCCCAACCGAGCTGCC A;?<;<@<<>>A=44:??:<>:=74<:>48;=583==9/8=9:228122( +853_1280_1971 77 * 0 0 * * 0 0 TATTTGGTCAGGGGCGAGGGCGGCGGCTTCAATCTTGGGGCAGTGGGTTG )9177)6,3)):16&'/,1:6<()?))()(>5><(1=<?1.&)>/6&(1, 853_1280_1971 141 * 0 0 * * 0 0 ATTTCCAAAGGTTCCTTGAGGAGAAGTGTAAACATTCTCAAGTCCACCAA ))(,8.)1)+/&',)*76&85:4'5$$'#2/&(/#.%#&4.'***-+'37 -853_1280_1971 77 * 0 0 * * 0 0 TATTTGGTCAGGGGCGAGGGCGGCGGCTTCAATCTTGGGGCAGTGGGTTG )9177)6,3)):16&'/,1:6<()?))()(>5><(1=<?1.&)>/6&(1, -853_1280_287 133 chrM 8561 0 * = 8561 0 GATCGTTCGCGAGCATCTGGCTTTCATGTATCTGAGGCAGCGCAGAGTGC >?A??>A>@A?>@><>?><@>@?<@=@8@;@:>;<>/=6<8193@86,/) -853_1280_287 73 chrM 8561 37 49M = 8561 0 AACTATCCTCGAATTCGCAGTAGCCATAATCCAAGCCTACGTATTCACT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y]]\] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:24T24 853_1281_1171 117 chrM 4957 0 * = 4957 0 TTCCTGATGAGGCAGCCTGGATGTATACTTGTGTGTACCACCTGATTGCT '+)&%(%:2&'*151;3:<49>:=<:9;>><<?<=:/=A=?:<A;?<:@< -853_1281_1171 153 chrM 4957 37 37M1D12M = 4957 0 ATACTATCAATTCTGGACTAGGAATTTAGGTTAACATCCAGACCAAGAG FSREOZRIHKRVVZ]WLR]]\YWZTW]]]YRZ]]]]\X]]VVY]]]]]] XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:1 XG:i:1 MD:Z:12T24^C12 +853_1281_1171 153 chrM 4957 37 37M1D12M = 4957 0 ATACTATCAATTCTGGACTAGGAATTTAGGTTAACATCCAGACCAAGAG FSREOZRIHKRVVZ]WLR]]\YWZTW]]]YRZ]]]]\X]]VVY]]]]]] XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:1 XG:i:1 MD:Z:12T24^C12 +853_1289_1050 89 chrM 573 37 49M = 573 0 TAGCAACAGCCTAAAACTCAAAGGACTTGGCGGTGCTTTACATCCCTCT AFW2$ETYZPIR\]XKQ\XUTQ[[@F][]MJ[Z]XQNS]LBMT\XOUWU XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 853_1289_1050 181 chrM 573 0 * = 573 0 TTTAACTGATTGCGGCGGACCGGTTATTGATATAAATGAACTCATGTAGC %*&&$(+36274':;<:5=6;3;:9:675:<74;:?6=:7878:;>>57= -853_1289_1050 89 chrM 573 37 49M = 573 0 TAGCAACAGCCTAAAACTCAAAGGACTTGGCGGTGCTTTACATCCCTCT AFW2$ETYZPIR\]XKQ\XUTQ[[@F][]MJ[Z]XQNS]LBMT\XOUWU XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1290_58 77 * 0 0 * * 0 0 ATAAGAAGGGGGTTCAACGGAACCGTGAACGCCAACCGGAAGTTAATCCC )<:<;9:>9:6==<90;<<9;;=98<;=<:1=<9.7<;6<1;>8;;<9<5 853_1290_58 141 * 0 0 * * 0 0 AGACACAGAAGAAAGACATCATCGACAGGTCCATCGTCGTATGCCAGAGC :846:=:>;;>:9:=8=<=@:;;=;,:9?@;9;><3?=6<1=6=98:/:; -853_1290_58 77 * 0 0 * * 0 0 ATAAGAAGGGGGTTCAACGGAACCGTGAACGCCAACCGGAAGTTAATCCC )<:<;9:>9:6==<90;<<9;;=98<;=<:1=<9.7<;6<1;>8;;<9<5 +853_1297_514 73 chrM 1985 37 49M = 1985 0 GAGGCACTGCCTGCCCAGTGACATCTGTTTAAACGGCCGCGGTATCCTA ]]Z\]]][]]]]UU]]]][[]XLU]]\QR]]NLYY[XU]]\X\][YXNK XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1297_514 133 chrM 1985 0 * = 1985 0 CTAAGTGTGTAACAACCACCCAACACGGCACGTCAAGATGCGCCGATACG 8@8;9>795A<8=9:A?7;@;??;5:><886<;:=6:9:8.=@=:4:9== +853_1297_1934 77 * 0 0 * * 0 0 TAATTTAGGTACGACTAACTCAATAAGCTAATTGAATGAACTAGGACTTA #&6##)0$)#4)#2##44&###7%/2##%1+#$,#*###$##5$#-###, 853_1297_1934 141 * 0 0 * * 0 0 TAGGGCTCACGGACTCCATCGCTACATCCCTCGGGGTGAAAGAAAACAAA 4*%#*,9)-*1751,197()*3-,#94&(-),$##.(#1/7%+#,0&,'0 -853_1297_1934 77 * 0 0 * * 0 0 TAATTTAGGTACGACTAACTCAATAAGCTAATTGAATGAACTAGGACTTA #&6##)0$)#4)#2##44&###7%/2##%1+#$,#*###$##5$#-###, -853_1297_514 133 chrM 1985 0 * = 1985 0 CTAAGTGTGTAACAACCACCCAACACGGCACGTCAAGATGCGCCGATACG 8@8;9>795A<8=9:A?7;@;??;5:><886<;:=6:9:8.=@=:4:9== -853_1297_514 73 chrM 1985 37 49M = 1985 0 GAGGCACTGCCTGCCCAGTGACATCTGTTTAAACGGCCGCGGTATCCTA ]]Z\]]][]]]]UU]]]][[]XLU]]\QR]]NLYY[XU]]\X\][YXNK XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1311_394 73 chrM 7953 37 49M = 7953 0 TTGAGAATCAAAATGAACGAAAATCTATTCGCCTCTTTCGCTACCCCAA 0JAJJLX33PV]]]][]]]]]]]]]]]]]]]]]]]]]]]RS]]]]]]NQ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 853_1311_394 133 chrM 7953 0 * = 7953 0 GGAATTGCCGTCGCGCGCTAGTTGGTTGGGCGTGCATGTTTTGGGTGGGT @=<><<?@?A<>?A>0(6)</.;<>:2<><07:<5(0;(4&&0;&.+1%/ -853_1311_394 73 chrM 7953 37 49M = 7953 0 TTGAGAATCAAAATGAACGAAAATCTATTCGCCTCTTTCGCTACCCCAA 0JAJJLX33PV]]]][]]]]]]]]]]]]]]]]]]]]]]]RS]]]]]]NQ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1312_213 77 * 0 0 * * 0 0 TCGCGAAGGGGACCCGTTATTTTAATAGTGCAGGGCATAACATTTAAATA 6?;==?@<<==A=;=<;8;99:8:<6>:6;<=:3(9/7986)5(./27&= 853_1312_213 141 * 0 0 * * 0 0 GATTCGGACAGAGGGCGAGGCTAGAAGGGCGGAGGGGAGCGGAGGCGAGG ?>:<?=?@=@=>;<<<?<=>?9?=:@<;<6<><61:4,1(2.)2&&,+2& -853_1312_213 77 * 0 0 * * 0 0 TCGCGAAGGGGACCCGTTATTTTAATAGTGCAGGGCATAACATTTAAATA 6?;==?@<<==A=;=<;8;99:8:<6>:6;<=:3(9/7986)5(./27&= +853_1321_1372 77 * 0 0 * * 0 0 CTTTAGCTCGCCTCAATGACCCGAATAGCACCCAGAGCAAGACTCCGCAT 5,7),=/'16=1,,':&,5);118181/18<'6;6/1@9,<9)>,,,&>( 853_1321_1372 141 * 0 0 * * 0 0 TGGACTTCAGTGGCAAGGGCGTCTAAAAATTAAAAGCTACCGTCAAACGC @A,>@(5);A&/6>>;??;7>9?19619>1=/<89<3;81>/=3>7/?/9 -853_1321_1372 77 * 0 0 * * 0 0 CTTTAGCTCGCCTCAATGACCCGAATAGCACCCAGAGCAAGACTCCGCAT 5,7),=/'16=1,,':&,5);118181/18<'6;6/1@9,<9)>,,,&>( 853_1322_846 117 chrM 3881 0 * = 3881 0 TTTTTTTCAAGTTTTCTCGGTTCGTTCGTCTTATTGGCTTAAATCCTCAG 7'8&:41-,72'$(6;-&$,5-('(4-0#;618,47-5)44#;5::;;;2 -853_1322_846 153 chrM 3881 37 49M = 3881 0 AAATAAGCTATCGGGCCCATACCCCGAAAATGTTGGATTACACCCTTCC ]YSUOT]YV]]]]XVNP]]]][]]XTW]\\\]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_1322_846 153 chrM 3881 37 49M = 3881 0 AAATAAGCTATCGGGCCCATACCCCGAAAATGTTGGATTACACCCTTCC ]YSUOT]YV]]]]XVNP]]]][]]XTW]\\\]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_1359_649 77 * 0 0 * * 0 0 GGAGAGGGGCTGCAAAATTTACCGAGCTGCTTCGAGGAGAGCCAAGGCGA <9;5<=;;::6;:;;1?88998<:>4:*91),4.5$7#,4'#$(,5.%)2 +853_1359_649 141 * 0 0 * * 0 0 GACACCCGCTCGAATCCATACACGACATAAGGGGCCTCCTGTGGAAAGCA 7>=41=&7/-)&+,8)/:):7,:<7)/0<:&&;(4(&(86'953.3>'./ 853_1359_2004 117 chrM 8663 0 * = 8663 0 CGCAGCTCGCCTCAGGAGCACTTTGGGACGCCGCTATTTGTGCTCCCTGG ,&94:;&75<=&898947:=>8<2?<><=>A?17;?<?.>>=A=@A<<=? -853_1359_2004 153 chrM 8663 37 49M = 8663 0 GCTTACCACATAGTAAACCCCAGCCCATGACCACTTACAGGAGCCCTAT ZK!%VPT]]\]]]\\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_1359_649 141 * 0 0 * * 0 0 GACACCCGCTCGAATCCATACACGACATAAGGGGCCTCCTGTGGAAAGCA 7>=41=&7/-)&+,8)/:):7,:<7)/0<:&&;(4(&(86'953.3>'./ -853_1359_649 77 * 0 0 * * 0 0 GGAGAGGGGCTGCAAAATTTACCGAGCTGCTTCGAGGAGAGCCAAGGCGA <9;5<=;;::6;:;;1?88998<:>4:*91),4.5$7#,4'#$(,5.%)2 +853_1359_2004 153 chrM 8663 37 49M = 8663 0 GCTTACCACATAGTAAACCCCAGCCCATGACCACTTACAGGAGCCCTAT ZK!%VPT]]\]]]\\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1360_1130 77 * 0 0 * * 0 0 TGCTTAGACTTTATTGCAGTCATAAATACCTATAATCCTTTGTGGTGACA >A@@<9?A:?>>?8@68?=>>9>/9<<44193577>;:;8?#,5.##4,) 853_1360_1130 141 * 0 0 * * 0 0 CAGCTCCATAGCCAATCTATTGCTCACGCAGGTCCGCGCCTACGACGTAT A@AA><:@8>@=AA@>8@A<?<@?@;=<A;A9=?A;<?>:>1>68<6?<; -853_1360_1130 77 * 0 0 * * 0 0 TGCTTAGACTTTATTGCAGTCATAAATACCTATAATCCTTTGTGGTGACA >A@@<9?A:?>>?8@68?=>>9>/9<<44193577>;:;8?#,5.##4,) 853_1361_389 117 chrM 15925 0 * = 15925 0 ATCTTTGGCTTAATCCAGTTCTTAACGACGGGCATTCGTGATACAGCTGT <94:)746=)9:6>)98798><<A=78A<=A?<A==:;7@>4?8>?=9=7 -853_1361_389 153 chrM 15925 37 49M = 15925 0 ACTAATCAGCCCATGCTCACACATAACTGTGGTTTCATGCATTTGGTAT VV]VYYS\[]RP]]]ZY]]]]]]]]]]]]XUY]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:31A17 +853_1361_389 153 chrM 15925 37 49M = 15925 0 ACTAATCAGCCCATGCTCACACATAACTGTGGTTTCATGCATTTGGTAT VV]VYYS\[]RP]]]ZY]]]]]]]]]]]]XUY]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:31A17 +853_1366_1495 77 * 0 0 * * 0 0 AACCATAAGGCGCTAACCACAATCGGTGACACCGGCTCCAAGCTTAGCCA ?;<9)6)&'&;+22'80:-%:&/3.<&)0(;):69;#)67;(8+&<-'%8 853_1366_1495 141 * 0 0 * * 0 0 CTTGAAACGGTACCAAAACCAAAGCGCAACCCTGTCCCGTAAATTTATAT AA;>9>>:<<::?8;>7:>597<>/@6=:8>9=A/:;>:;/9==92/819 -853_1366_1495 77 * 0 0 * * 0 0 AACCATAAGGCGCTAACCACAATCGGTGACACCGGCTCCAAGCTTAGCCA ?;<9)6)&'&;+22'80:-%:&/3.<&)0(;):69;#)67;(8+&<-'%8 -853_1367_802 137 chrM 1422 37 49M = 1422 0 ATTCATAGGTAGAGGTGAAAAGCCCAACGAGCCTGGTGATAGCTGGTTG ]]]]]]]]]]]]]]]]]]]]]][]]]]]]]]]]]]][]]]PEY]]]]ST XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:4G44 853_1367_802 69 chrM 1422 0 * = 1422 0 GTTGTTATAGAACAGTCAACCAGCACTGTCTAAGTGGATTTCCGTGGCGG =<?;$%&<<&(5>='(3><+648A+*:<@#46><#70<>#*.<3237=;% +853_1367_802 137 chrM 1422 37 49M = 1422 0 ATTCATAGGTAGAGGTGAAAAGCCCAACGAGCCTGGTGATAGCTGGTTG ]]]]]]]]]]]]]]]]]]]]]][]]]]]]]]]]]]][]]]PEY]]]]ST XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:4G44 +853_1382_1227 73 chrM 682 25 49M = 682 0 GCCTATATACCGCCATCTTCAGCAAACCCTAAACAAGGTACCAAAGTAA ]]]][Z[\][ZZ]]\XY]][[YY]]][]]UVRQ[[\TSXUVILYPKHS] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:42G6 853_1382_1227 133 chrM 682 0 * = 682 0 CTTGTCCTCTATCATACCAATCTAACTCGACCTTTAGTCTCCTCTCCTCT <;:99:98::8:#5:;:(7:6<#8<6:%0<89,5944,8:9:4/020*), -853_1382_1227 73 chrM 682 25 49M = 682 0 GCCTATATACCGCCATCTTCAGCAAACCCTAAACAAGGTACCAAAGTAA ]]]][Z[\][ZZ]]\XY]][[YY]]][]]UVRQ[[\TSXUVILYPKHS] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:42G6 +853_1383_1269 77 * 0 0 * * 0 0 GGGTGCTGCTGTCTCAACGGGCTGAGGGATAGCTGGTGGGAGCCCTTACC ,@)':/)>6:(*'*9&';-(:),4((/,#31;7&/532*8,5:5*75,+1 853_1383_1269 141 * 0 0 * * 0 0 CTATTGACCAACACAGTTCAAGCCAATTGAAATTAGACTCCCCAGGCGTT /))3(<(152,3),<8:2)37;.6/&7$)1/,$0'%4$3&74).0&0%13 -853_1383_1269 77 * 0 0 * * 0 0 GGGTGCTGCTGTCTCAACGGGCTGAGGGATAGCTGGTGGGAGCCCTTACC ,@)':/)>6:(*'*9&';-(:),4((/,#31;7&/532*8,5:5*75,+1 +853_1395_1324 77 * 0 0 * * 0 0 ACTTTCGCGGCCAAGGCCTCCTCCCTAGGGCCTTCCCGACCCGCTGCGGG )9-',&9*3)9',(1%6%7/4681)11&+:-1/4205()&3',,+$0#%% 853_1395_1324 141 * 0 0 * * 0 0 TAAGGAACCGCTCAACACTTATGGACTCGATCGGCCGCCGTGGTTGAGCC 4*,19./*)96*83;4,/1,)'27)2082,,'*6(&)&*%(*3422-+1+ -853_1395_1324 77 * 0 0 * * 0 0 ACTTTCGCGGCCAAGGCCTCCTCCCTAGGGCCTTCCCGACCCGCTGCGGG )9-',&9*3)9',(1%6%7/4681)11&+:-1/4205()&3',,+$0#%% -853_1396_1014 137 chrM 13417 37 49M = 13417 0 CCAAAAATCAGCATCACTTCTACTAGACTCAATCTGACTAGAGAACATC ]]X]]]\Y]]]]Y]]][]]]][]]]]\]]]WR\]]YX]]]]]]]]QO]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:42A6 853_1396_1014 69 chrM 13417 0 * = 13417 0 GGTCCCCTAGAGTGGGGCCTCGAACCTACAGATATTGAGTCGGGAGCCCG @<@:===?<;==98<:9>9:=:;@;:;=68::<:::;>:::><<863>9; +853_1396_1014 137 chrM 13417 37 49M = 13417 0 CCAAAAATCAGCATCACTTCTACTAGACTCAATCTGACTAGAGAACATC ]]X]]]\Y]]]]Y]]][]]]][]]]]\]]]WR\]]YX]]]]]]]]QO]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:42A6 +853_1412_1664 89 chrM 2467 37 49M = 2467 0 TAATGGTGCAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAAAGTCT WKT\NDIZ]NMRMTZ]]JH,/NDHHV]TTE>RZ]]XMVVSJJZMRYY]! XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 853_1412_1664 181 chrM 2467 0 * = 2467 0 TATACGACGAATCATTAGACCTCGGGTTGTGTTCAATTCCTGTCCAGATC (&&&1.)0&1,&$31'.$1-&)#13,*%)+,'$/4,$$*/,5,765)545 -853_1412_1664 89 chrM 2467 37 49M = 2467 0 TAATGGTGCAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAAAGTCT WKT\NDIZ]NMRMTZ]]JH,/NDHHV]TTE>RZ]]XMVVSJJZMRYY]! XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1413_877 77 * 0 0 * * 0 0 GACGGTCGTCCCTATTGTATTCGTCTCTCCGTGTCGTGACGTTGCCCGGT &)#*648#,9(.#3&&(#9.2,#/%3)#&555#).%3#19-4#4'3,#2+ 853_1413_877 141 * 0 0 * * 0 0 AGGTCAGTTTCCAAGGTGGGGGTTGGCATTACGTACCATTCGATTAGATT ?A?<<;A><?;A=<;;>856/>#%###&###%####&&###$$$&#%#$$ -853_1413_877 77 * 0 0 * * 0 0 GACGGTCGTCCCTATTGTATTCGTCTCTCCGTGTCGTGACGTTGCCCGGT &)#*648#,9(.#3&&(#9.2,#/%3)#&555#).%3#19-4#4'3,#2+ +853_1437_116 77 * 0 0 * * 0 0 AGCTGCGGCAGCCGAACACGGCACAAGGTTGGATAATCACCGGAAGTGGA $;,)42'#2(#&,,#%#2,2%,',42#$))#*428#%$2.%$%4%*#)%& 853_1437_116 141 * 0 0 * * 0 0 CCCAAACCAGGCTCGTCCCCTTTAAGATAGTCTCGCCCCCCCTCAACTTG 6>>9;<@7=::=:>=544=54#'8&5-2)#(*)4,&%+#',2-&+&0-*2 -853_1437_116 77 * 0 0 * * 0 0 AGCTGCGGCAGCCGAACACGGCACAAGGTTGGATAATCACCGGAAGTGGA $;,)42'#2(#&,,#%#2,2%,',42#$))#*428#%$2.%$%4%*#)%& 853_1437_1533 117 chrM 9411 0 * = 9411 0 CGCAATTAAACTTAATGCGACATAAATAGCGGCATCGGACCTCCATACTG #%*(4-#(4%$#$&4+*2586;9A<89:><5=?>;=?>=:<=8>>:?<@> -853_1437_1533 153 chrM 9411 25 49M = 9411 0 TCTATTGATGAGGATCCTATTCTTTTAGTATTGACCAGTACAATTGACT ]]]]]VV]UY]][]]VX]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:1T47 +853_1437_1533 153 chrM 9411 25 49M = 9411 0 TCTATTGATGAGGATCCTATTCTTTTAGTATTGACCAGTACAATTGACT ]]]]]VV]UY]][]]VX]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:1T47 +853_1486_1272 89 chrM 9431 23 49M = 9431 0 TCTTTTAGTATTGACCAGTACAATTGACTTCCAATCAATCAGCTTCGGT NHVQR]SN\][RQO@MTMYUVVT]SU]]OJYYXVSSKOSSTRS]]XUOU XT:A:U CM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrM,-9432,1S48M,3; 853_1486_1272 181 chrM 9431 0 * = 9431 0 ACTATGAAAAGCCTCCCGACGCAAGAAAGCATTCACGATATGGACATAGC 22%-,))%99<168=961#151,#/9(3%89/76:7)55965689<<7(7 -853_1486_1272 89 chrM 9431 37 49M = 9431 0 TCTTTTAGTATTGACCAGTACAATTGACTTCCAATCAATCAGCTTCGGT NHVQR]SN\][RQO@MTMYUVVT]SU]]OJYYXVSSKOSSTRS]]XUOU XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_1487_496 77 * 0 0 * * 0 0 TTTATTACGGGCGACGAAACGAATGGTATTTCCCTTGCGTTTTTCGCTTG <,'+856638:)0*.,+&.;7&1+;5-&1779<0:+3)/&+;1&,7()(( 853_1487_496 141 * 0 0 * * 0 0 GTCGCACCCCTCCTAAACCCCAGATCAAAAACTGCACCCGCGACCCACTC 6969=651<=::86774;7:<9=/69>0366/8,,8=:</6&31(3,/&) -853_1487_496 77 * 0 0 * * 0 0 TTTATTACGGGCGACGAAACGAATGGTATTTCCCTTGCGTTTTTCGCTTG <,'+856638:)0*.,+&.;7&1+;5-&1779<0:+3)/&+;1&,7()(( +853_1488_605 77 * 0 0 * * 0 0 CCCGTAAGGAACGGGGATTAGAAGGATGGCAGGGGAGTGGAAACGAAGGG (%/)'(32+'))1*6776&2%)8&,7)71'2&$5+%))724&0)$('&(' 853_1488_605 141 * 0 0 * * 0 0 TCGCCGCCAAACGATGCACTAATTTGCTTACCGGCCAGGCACGGATCGAA 0)&)&1)/1(6)&(+),1=/*&&(&41,',)&1/(/,9/)1//<)&:15, -853_1488_605 77 * 0 0 * * 0 0 CCCGTAAGGAACGGGGATTAGAAGGATGGCAGGGGAGTGGAAACGAAGGG (%/)'(32+'))1*6776&2%)8&,7)71'2&$5+%))724&0)$('&(' -853_1489_374 137 chrM 14307 37 49M = 14307 0 CCTAATCCTCCAAATCCTAACAGGCCTATTCCTAGCCATACACTACACA ]][NR]Z]]]]]]]]YXWQY]]WZ[\]]]PT]]]PU]]]X[]XR]]]]\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:16T32 853_1489_374 69 chrM 14307 0 * = 14307 0 CTCTTCAAACTGACAGCGCAATGGATGAGGCCACAAAAAGAAACTTTAAA >8786=:8:3:2;;;6(=99.3=5*/,%'(+#7121074(25$0,+%,27 -853_148_1347 133 chrM 14085 0 * = 14085 0 TAAGGCCCGTGCCGGTCCGTCCAATGATATTGGAGGAGTTCCGGAGCAAG A=;@>>?=@@A@?A@>@A@=9?9<A@;9>>>>>7;=8<=;8;?;18?62= -853_148_1347 73 chrM 14085 37 49M = 14085 0 ACTCAAAATAAACACAATATATGTCATCATTATTCCCACGTGGAATCTA #$]]]]]]]]]]]]]Z[]]]][V\\[]U\[Z]KQ]YOQW]]QUYWWZTQ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_148_1509 141 * 0 0 * * 0 0 TGAATGTAAATTAAACGGGAGGAAAAATCTCCCCACAATTGAGGCCTTCC ./<&1=35>,/3(6,,1<3*)7,53)69<&(A<8+(;91).8&+7(:&<7 -853_148_1509 77 * 0 0 * * 0 0 GCTGGGTGAAAAGGCCCCGGCTTCACAGAATGTAATTTCTAATAGTCTTT -'-:+&1.,)&&=(=)?7=<=4&,>:(;,&<))))8)+(,'&(4&,(,3) +853_1489_374 137 chrM 14307 37 49M = 14307 0 CCTAATCCTCCAAATCCTAACAGGCCTATTCCTAGCCATACACTACACA ]][NR]Z]]]]]]]]YXWQY]]WZ[\]]]PT]]]PU]]]X[]XR]]]]\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:16T32 +853_1493_452 77 * 0 0 * * 0 0 CGCTCTCCCGATTCAGCAAAACAAACAAGGCTCCACCGTCCCGGGGCCGA '$),&/'53(%$((6'*'(&+%694&(2.1'&1(3&2'9/%)(&)()'(/ +853_1493_452 141 * 0 0 * * 0 0 GAAAGGACCAAACCAGGAGCATCCACCCATGGCCGCTAAACTAGGAGGAG $*)&'#,,,##(*#'%#%##(#))###%$$$##%###$#)###'#%%(%# 853_1493_1908 117 chrM 14920 0 * = 14920 0 TTGTGGTATAAAGGACACGCCTTGGTGGCCAAGTTGTCAACGTAATCATG ;<<9:=7<;;9<?=<;9<<=<88?>==;?<==;;=><;===:::>?;<@; -853_1493_1908 153 chrM 14920 37 49M = 14920 0 TTCTCCCCTGACCTCCTAGGAGACCCAGACAACTACACCCCAGCTAACC YY[]]ZX]]YYY[]]]]]]][\]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:8C40 -853_1493_452 141 * 0 0 * * 0 0 GAAAGGACCAAACCAGGAGCATCCACCCATGGCCGCTAAACTAGGAGGAG $*)&'#,,,##(*#'%#%##(#))###%$$$##%###$#)###'#%%(%# -853_1493_452 77 * 0 0 * * 0 0 CGCTCTCCCGATTCAGCAAAACAAACAAGGCTCCACCGTCCCGGGGCCGA '$),&/'53(%$((6'*'(&+%694&(2.1'&1(3&2'9/%)(&)()'(/ +853_1493_1908 153 chrM 14920 37 49M = 14920 0 TTCTCCCCTGACCTCCTAGGAGACCCAGACAACTACACCCCAGCTAACC YY[]]ZX]]YYY[]]]]]]][\]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:8C40 +853_1498_1797 77 * 0 0 * * 0 0 CCTCAGCGCCACCCAGCTTGGAAAACTAAACAAACAAATAAACTTTCACT &&&&&#&#######&$##&########$&$###&$$$###$$#$#$#### 853_1498_1797 141 * 0 0 * * 0 0 TGAAGGTCGCATGGCGCGGATTGCACAGCAGATCAACTGTTTCAAAAACA 3=#&&04&',.8#*&-:&.*./$'#);%.$21'0&&/&###4$&%%0$#$ -853_1498_1797 77 * 0 0 * * 0 0 CCTCAGCGCCACCCAGCTTGGAAAACTAAACAAACAAATAAACTTTCACT &&&&&#&#######&$##&########$&$###&$$$###$$#$#$#### 853_1499_1261 117 chrM 2408 0 * = 2408 0 TTTCATTTAACACCGGGAATGGTTCACAATCAATGCCCGAGCAGCACAGT /2&7=)6&?<)/56<9:<9:7&;7<:<9<89;>9A><>>?5<<;=<=:;: -853_1499_1261 153 chrM 2408 37 49M = 2408 0 ATTCCAGAGTCCATATCGACAATTAGGGTTTACGACCTCGATGTTGGAT ]/4ZY]\\QT]KO]]YMXZ[WOMN]]TW]]]\VSYQSSQXVWQT[RY]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1499_1261 153 chrM 2408 37 49M = 2408 0 ATTCCAGAGTCCATATCGACAATTAGGGTTTACGACCTCGATGTTGGAT ]/4ZY]\\QT]KO]]YMXZ[WOMN]]TW]]]\VSYQSSQXVWQT[RY]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1509_820 77 * 0 0 * * 0 0 GCAACCTGACCGTTTACACAACGTGTGGAAAAGAGGTGGGAGAGGGTTGG 18;:.49;5+6/<=879672373=.:;;47$'%06262%562%':5$5&: 853_1509_820 141 * 0 0 * * 0 0 ACAAGAGACTACGAGGACACACTCCGGCCCTAAATCGCGAAAAACGGCCC ',.1438/1)&1*3.18,72875),/*&://.4&),+/#+3%5*)56((& -853_1509_820 77 * 0 0 * * 0 0 GCAACCTGACCGTTTACACAACGTGTGGAAAAGAGGTGGGAGAGGGTTGG 18;:.49;5+6/<=879672373=.:;;47$'%06262%562%':5$5&: 853_1510_448 117 chrM 982 0 * = 982 0 CCGCACCGGGCAGCAGCCAGGAGGATTATGGGGTACCTGATGTTGTTTGT ##$########''%$+'4)%0%34)82'2,(/27/,*:4'2177460826 -853_1510_448 153 chrM 982 37 49M = 982 0 CCAAACATATGAAAGGAGACAAGTCGTAACAAGGTAAGTATACCGGAAG QSZ\WTIO[MGR[]]UO]]Y[WWYTSPY]Y[X]]XZV[]TRU[Z\[Z]$ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1510_448 153 chrM 982 37 49M = 982 0 CCAAACATATGAAAGGAGACAAGTCGTAACAAGGTAAGTATACCGGAAG QSZ\WTIO[MGR[]]UO]]Y[WWYTSPY]Y[X]]XZV[]TRU[Z\[Z]$ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1511_561 73 chrM 1971 37 1M1D48M = 1971 0 CTTCCCAGTATTAGAGGCACTGCCTGCCCAGTGACATCTGTTTAAACGG !!\]]]]]\]ZW[]]QQ]]]Z]]UT[]]]]]]]]]V[]]]SAMXYTTXK XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:1^A2T45 +853_1511_561 133 chrM 1971 0 * = 1971 0 GCAAACCGTTCTGATGTAAACAACGTCAATTTGGGCCTTTACAAAGCGTT ?A===@A?><A8A>:>9;;=@828;'#+99:#'9;;4#>6-1/89,-&45 +853_1511_1886 77 * 0 0 * * 0 0 GGATAGTAGGAACGAGATGCGGGGAACCCGTTTGGTGCTCGGCGGGTGTG :A(>/2;&>='7&>::(1678>>:1&(<::11,.<8,(),8>%8</):(< 853_1511_1886 141 * 0 0 * * 0 0 GACGTCGTCGTCGTCGTCGTTAACCCTAAGGTTCGCGGGACCCCTCAACA 99;<=:>?<;=8;>=;8=<==9:8::==:9,8?:;)0<6.13;+:*5/:) -853_1511_1886 77 * 0 0 * * 0 0 GGATAGTAGGAACGAGATGCGGGGAACCCGTTTGGTGCTCGGCGGGTGTG :A(>/2;&>='7&>::(1678>>:1&(<::11,.<8,(),8>%8</):(< -853_1511_561 133 chrM 1971 0 * = 1971 0 GCAAACCGTTCTGATGTAAACAACGTCAATTTGGGCCTTTACAAAGCGTT ?A===@A?><A8A>:>9;;=@828;'#+99:#'9;;4#>6-1/89,-&45 -853_1511_561 73 chrM 1971 37 1M1D48M = 1971 0 CTTCCCAGTATTAGAGGCACTGCCTGCCCAGTGACATCTGTTTAAACGG !!\]]]]]\]ZW[]]QQ]]]Z]]UT[]]]]]]]]]V[]]]SAMXYTTXK XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:1 XG:i:1 MD:Z:1^A2T45 +853_1530_202 77 * 0 0 * * 0 0 GGTTCATGGCGGGACATGAGGTGCCATACCGCAACCCTCTAGGCTGATCG /9::8:7;58;0<%;;9=(3;8<1;73;16;1=57686/585:30;/<61 +853_1530_202 141 * 0 0 * * 0 0 GGGGACTGAAGAGCGGCCATTAAGGGAGAATTGAGGAGAAGAGATGAGAA ;<;99=:99>6>8:8<?:898A=2<7@88>)6#/+,&)(#,'-%#+-*%( 853_1530_1652 117 chrM 5148 0 * = 5148 0 AGATTCCGGCATTTCAGCTAGTGCCTGCCCAGCCGTATATATTCGGCAAA +$5/5&$4982/;*;5#:3;(%;:;0'<7952:561);57)#<0-%6;58 -853_1530_1652 153 chrM 5148 37 49M = 5148 0 AATTTTAGTTAACAGCTAAATACCCTAATCAACTGGCTTCAATCTACTT DM[\UX]]\V[]]]]]]]]]]Z]]]]]]]]]]]]\]][]]]]]]]]]]\ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_1530_202 141 * 0 0 * * 0 0 GGGGACTGAAGAGCGGCCATTAAGGGAGAATTGAGGAGAAGAGATGAGAA ;<;99=:99>6>8:8<?:898A=2<7@88>)6#/+,&)(#,'-%#+-*%( -853_1530_202 77 * 0 0 * * 0 0 GGTTCATGGCGGGACATGAGGTGCCATACCGCAACCCTCTAGGCTGATCG /9::8:7;58;0<%;;9=(3;8<1;73;16;1=57686/585:30;/<61 +853_1530_1652 153 chrM 5148 23 49M = 5148 0 AATTTTAGTTAACAGCTAAATACCCTAATCAACTGGCTTCAATCTACTT DM[\UX]]\V[]]]]]]]]]]Z]]]]]]]]]]]]\]][]]]]]]]]]]\ XT:A:U CM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrM,-5149,1S48M,3; +853_1569_1617 73 chrM 15857 37 10M1D39M = 15857 0 TTCAGGGCCATCCCACCCAACCTCGCCCATTCTTTCCCCTTAAATAAGA ]]]]]]]]]]]]]]]]]]]]]]]]WX]]]\Z[]]QO]]\OQUSWMNK5I XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:10^T39 853_1569_1617 133 chrM 15857 0 * = 15857 0 TAATTGTATATAAATGCTGCATGCCGGGAAATTGTGCAGCTACGTGGAAG <A@=>?><<>=@@?=@?;=<=<9A<==;AA>;57:<?<;75>67695@:6 -853_1569_1617 73 chrM 15857 37 10M1D39M = 15857 0 TTCAGGGCCATCCCACCCAACCTCGCCCATTCTTTCCCCTTAAATAAGA ]]]]]]]]]]]]]]]]]]]]]]]]WX]]]\Z[]]QO]]\OQUSWMNK5I XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:1 XG:i:1 MD:Z:10^T39 +853_1570_1472 77 * 0 0 * * 0 0 CACCGGGACTAAATTAGCTTCTCGTTCCAGGCGCATCGGACTCACGTTAT @A=?<A?@?A=9=AA=@=;>?>?<@=><=:<@9=,A?;<<7<=61;>9/? 853_1570_1472 141 * 0 0 * * 0 0 CGACGCACGTCCGCAGGTACCAGGAACGTCATCCGTAACCGCGGGCACGC <=<>==;=:@>@<@==AA?A@>A?@<@?=A9>@?;>=9?<9>A>><3;=7 -853_1570_1472 77 * 0 0 * * 0 0 CACCGGGACTAAATTAGCTTCTCGTTCCAGGCGCATCGGACTCACGTTAT @A=?<A?@?A=9=AA=@=;>?>?<@=><=:<@9=,A?;<<7<=61;>9/? -853_157_314 141 * 0 0 * * 0 0 GATAGCAAAAAAAGGGGCCGAGCGCAAAAGCCGACCTGAGCACAGACGAA 9;:5461242#)#*1####('$$$##'#%#'$$%###/$%($#'#$$#+# -853_157_314 77 * 0 0 * * 0 0 CTCGCCTGGAATTTAGCCATGGCTATGTTCTAGGTGCTTTGTTAGTTGCG 79();(1<))&2(5+&8&+.9-'198,',))&&7&:*,4)(6&2&/:&77 -853_157_582 117 chrM 893 0 * = 893 0 ATTTTGATATTGCCTAAGCCAGGAGGATTATGGGGTACCTGATGTTGTTG 2&==93398<:46<@<:?:==6>:<<<=?=>;;<;A;;:>;;><::??:= -853_157_582 153 chrM 893 37 49M = 893 0 GCTTAATTGAATCAGGCCATGAAGCGCGCACACACCGCCCGTCACCCTC O/3]Y[12]PSUUY\]XXYZ\VY]]]]]]]]]]]][]]]]]]]]]]]\\ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1585_323 73 chrM 8665 25 49M = 8665 0 TTACCACATAGTAAACCCCAGCCCATGACCACTTACAGGGGCCCTATCA #"]\X]]]]]]]\]]Y[]]]QO]]\PPYZ]\Y\WXULU]PDPYVVSIQ\ XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:39A9 +853_1585_323 133 chrM 8665 0 * = 8665 0 CAAGGGACTATAACTGAGGGGTGTGGAGCGGTTGGTTGGCCAGCGCATTA <;:>?<0<;;=;9781&(,95'+$-+2#,#'',1',$,$1/5+#2)6%&( +853_1585_2023 77 * 0 0 * * 0 0 AATAAATATTACCATTTAAGAAGGAATACGAAAAGACGCCGGCGTCCACT :A=>5#:==<+=<==)=?<=&<=<>%<<?;)<=<=#>9<:$<;;:&?3<5 853_1585_2023 141 * 0 0 * * 0 0 AGGGGGATGCAGGCAAGACAAACGGCACGGGCGTGGGGAGAGGTCCCAAG ?>@A>=44@@8<5A<7>:=?577<?867=>4588>:;88<59;<=:;)9= -853_1585_2023 77 * 0 0 * * 0 0 AATAAATATTACCATTTAAGAAGGAATACGAAAAGACGCCGGCGTCCACT :A=>5#:==<+=<==)=?<=&<=<>%<<?;)<=<=#>9<:$<;;:&?3<5 -853_1585_323 133 chrM 8665 0 * = 8665 0 CAAGGGACTATAACTGAGGGGTGTGGAGCGGTTGGTTGGCCAGCGCATTA <;:>?<0<;;=;9781&(,95'+$-+2#,#'',1',$,$1/5+#2)6%&( -853_1585_323 73 chrM 8665 25 49M = 8665 0 TTACCACATAGTAAACCCCAGCCCATGACCACTTACAGGGGCCCTATCA #"]\X]]]]]]]\]]Y[]]]QO]]\PPYZ]\Y\WXULU]PDPYVVSIQ\ XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:39A9 -853_158_402 141 * 0 0 * * 0 0 TCACAGACCCGAGGAAGCTTCGTATATTTGCCACTAAGGGCGTCGGGGGA 5;&35,<55<8<6;<3646:618477::95<92=752071+2339-.#11 -853_158_402 77 * 0 0 * * 0 0 GGTTGTTAAACCGTCCCGGGCGTTATCCACGTGTGATACCCGCGCATGTG 711&$(-)##.,&((&(4('83><-:94,'.;2&*:<0%&7,3#+02#(# -853_158_569 137 chrM 6195 25 49M = 6195 0 ATCCATTGGCTTTCTAGGCTTCATCGTATGAGCTCACCACATGTTTACA $]\YYYQM\]\WX]\\MN][YQS[\WS\YV]]VV]]MFY\]XPSV]SGL XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:30G18 -853_158_569 69 chrM 6195 0 * = 6195 0 TTCGTAATTATATTTGTCGGGCATTATGAGTACGGAGGTTATTATATAGG 8>34:8.56,9/7<=-80.562,994:)3,<#%85(,#7&%,'#3#,#%& +853_1603_500 89 chrM 13884 25 49M = 13884 0 CTCAGTAGCTATAGCCGTTGTATAACCAAAAACAACCAACATTCCTCCC ,T]YOQSTUSUY[\XU[]]ZZTY][]]]]]][\]\]]]]ZVX]WZ]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:9C39 +853_1603_500 181 chrM 13884 0 * = 13884 0 AACAGGCCGACTTTGGTCCAGGGGAAACGTTTGGTGACTCAGAATAGGTC %/06321266(/.:504#:7(&,9:39544<<8<95<2>:8<8:=87:<: +853_1603_1995 77 * 0 0 * * 0 0 CCAGGGAGATCCTAACGTGGAGCCGCGAATACTCCCAACCACCTATACAG :;;;>=<9A==;9:=;6::?:9@<@:8<<;:6><@<<9;@595:684279 853_1603_1995 141 * 0 0 * * 0 0 CTGGTACCGGTATGAGCCTAGGATAGAGCGGCAACTCTTATACTGCCGGT 9=:8;>>=<==<<>=AA@><A><<=?>?=<<??<<;?;;?<86=<9?=3; -853_1603_1995 77 * 0 0 * * 0 0 CCAGGGAGATCCTAACGTGGAGCCGCGAATACTCCCAACCACCTATACAG :;;;>=<9A==;9:=;6::?:9@<@:8<<;:6><@<<9;@595:684279 -853_1603_500 181 chrM 13884 0 * = 13884 0 AACAGGCCGACTTTGGTCCAGGGGAAACGTTTGGTGACTCAGAATAGGTC %/06321266(/.:504#:7(&,9:39544<<8<95<2>:8<8:=87:<: -853_1603_500 89 chrM 13884 25 49M = 13884 0 CTCAGTAGCTATAGCCGTTGTATAACCAAAAACAACCAACATTCCTCCC ,T]YOQSTUSUY[\XU[]]ZZTY][]]]]]][\]\]]]]ZVX]WZ]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:9C39 -853_216_501 141 * 0 0 * * 0 0 CTTTTAATGGGTCCCTCTCTTACAAGGCTCTGTTAATTTTTCCTTTCGAA 85<85,7=47;:627;<6<4<::445934*:5<2)$9&-$273#/#6-.* -853_216_501 77 * 0 0 * * 0 0 CCCTGGCCGGTCGGGTGCGTCACGCGCCTGGCGGAGCTCCTAGCCACGCC />61=+11:/5/+/(&/1'%#:3&;&93(';0$4&*9,&/+))2')65.& -853_216_648 117 chrM 1235 0 * = 1235 0 CGAGGCAGCCCATTGAGTTTGGTCCCCCTTAGTTACAGGATTTCCAGCCG +&'%(14'2,09:7(776;53=99/58>75;88784;/:8)884;7/;6/ -853_216_648 153 chrM 1235 37 49M = 1235 0 AAGGGAACGATGAAAGATGTATTAAAAGTACTAAACAGCAAAGCTTACC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]SU]]]YY]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:19C29 -853_218_1907 133 chrM 1146 0 * = 1146 0 GAATGGCTTGACAAAGGGAGAAACGCATATCCTGTGATGTTATTTAAGAG 5).5<9?642>9+;9<;;:28=4886909479&7,3;&#9+:,6'5,(&/ -853_218_1907 73 chrM 1146 37 49M = 1146 0 TACCCTTAGTCACTTAACTAAAACATTCACCAAACCATTAAAGTATAGG YQOTRVYOS[\Z[XX]\YOS]XW]]\Z[X\ZUZWZ\XVVZQPMKWTUJ> XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_219_184 141 * 0 0 * * 0 0 CAGTAGTTGCATGAGTCATGAGGTTGGGTTGTTGGCAGCTGTTGTCGGCT '*)%%,,##3,1+,,#'&)#+#/-),%(&+$)%#%$&(&/#&(#%#'$%$ -853_219_184 77 * 0 0 * * 0 0 GCATTTGCGACCATTTTGGGGTTGGTGGGGTGGGTGGCCGGTGGGTTGGG /&3&,)/,$)/&)2&#%(:/+#,*&$+$$(&1)/&+1##'&'#-,)&'%- -853_233_615 141 * 0 0 * * 0 0 GCCTTAAATCGATATAGTCGCGGGCCCCAACCGGGCCGAGTACACTGGGC ;@),<%8)(&<(0)<&<)&53.*%/,5,6*/6;.)+>,%.,7,#,,*$%$ -853_233_615 77 * 0 0 * * 0 0 TTATGGATTAAATTTTAGCTAATTTGGCCCCTATGGATAAGGAATCCCTA (7.1:154753447,222383647814041,3+,4.-/%+21((2)2'7) -853_233_834 137 chrM 8993 37 49M = 8993 0 CCACCCACAGGTATCCACCCCTTAAACCCCCTAGAAGTCCCCTTACTCA ]]]]]]]]]]]]]]]]]]]]]]\\]]]]]]]]]OQ]]VY]]SOVQ\]YS XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_233_834 69 chrM 8993 0 * = 8993 0 GGGAGTTCTAGTGGAGAGATTATTCGCCGCCAGCTGCGTTGAGAGATGAA =<<=;><:6:;<<3>=:=8>><<8;<=63;>99099&%,##&'2##%/$% -853_244_474 141 * 0 0 * * 0 0 CGGACAGAACGAAAACTCCTAACAACAGAGCTGAGCAAACCAATCCAGCC *$(5.+###%$$2*+'#$('/(#*$$$$0%'$$3',$(*#&'4(%$#/$$ -853_244_474 77 * 0 0 * * 0 0 GATTGAGAAGGCTGCAAACGGCGAACGACCGGGCGGCCTAAAACCACGGA )15$&/&*,&,,(&&0.,&,07:)/1/4&))96&)'/&''.(+&1'&)'' -853_244_781 117 chrM 652 0 * = 652 0 GCAGCCACGAATGTCAAAATCTGGACCACTATACGGTGTCATAAATTCTT &24)57:,,<=892<?=>;9>989@=;>;:?7><<>;=7=86>>;:9><8 -853_244_781 153 chrM 652 37 49M = 652 0 CGATAAACCCCACCATCCCTTGCTAATTCAGCCTATATACCGCCATCTT ZOE[\XROW[]ZQJW]I?T]]][]]]]Z]]][Y]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_255_146 141 * 0 0 * * 0 0 GGGAAGAGCCAGGGAGGACTGGGGCTGGAGCAAAAGAGGCGAGGGGGGCG #$##$%###&##'#&##$###&#&$######$####%%$$/$'%$'#$$# -853_255_146 77 * 0 0 * * 0 0 CCTATGTCCCCTGACGGCACGCCGGGTCACCGAGCCGGGCCGCGCCCGCC 5.)8&)'++7:',%'&&,(1)1/8'('%1)20#%,4-$.&$''(1(0(/7 -853_255_403 117 chrM 13900 0 * = 13900 0 ATCCTCAGCACATAAGTGCGTGATTACCGATTGTATCATCGCTCGGTTGT 130>7&9+9:-83?<09=>;85?>=78;<<=99;>)87;>;9;=>?<:8< -853_255_403 153 chrM 13900 37 49M = 13900 0 GTTGTATAACCAAAAACAACCAACATTCCTCCCAAATAAATTAAAAACA 7FFGW]]]RIS\]]YT\]SMKT\TW[\\]Z[]]]]]]][[]]YZY]]Y\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:41C7 -853_256_428 141 * 0 0 * * 0 0 ACGAAGCGGTGTACCTGGCCCTACGCGGAAAGGGGGAAACCTTCCCAAAT @?8<A:A969=<:71?;;<5==>81><1<&??:264@>>/=<-819><() -853_256_428 77 * 0 0 * * 0 0 TAATTCAAGCAGATAAAAGAGTGTGCGCCCACCCTCCAAGGAAATAGAAA 2=<66<=>6::3<,8;>:3<3825,:1:98897,057::24<986:+,:: -853_256_834 117 chrM 9813 0 * = 9813 0 GCCCTCTGGCAAACCTACGGTAAGTTTGCCATGGAATCTTTGGCGACATT ######$$##############$#&####$&$##&##########)#&%' -853_256_834 153 chrM 9813 37 49M = 9813 0 TGAACCCAAAAAGGGCTAGAATGAACTGAGTATGGTAATTAGTTTAAAC DL]TAFU]\TDH]]]WZ]\NU\VZVU\]]]Z]]Z\\Z]]]]WZ]]]WWX XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:14A34 -853_266_1092 141 * 0 0 * * 0 0 GGCGCGGATTATTGTCTTAGCTTTGCTACCGTTATATGCGCTTGTCTTGT ,318925,37;9,999<52622989/:7220#3$247,',*1'##,1,#5 -853_266_1092 77 * 0 0 * * 0 0 GAGCCGGAACGAGACAACCCGTTCTTAACATCCACCACGCGTGGGCGACG ;)2))/8%'10:712<67<3(39</68/5)6&')/170&49)6)//,)&& -853_266_697 181 chrM 1002 0 * = 1002 0 CAAGTCCACTTATATATGCGCATCGGGTTTTTGGTGGAAGGTTGTCATGT ::<;9796:::;9;;;<4>=2=;<;?=>?=;==?><6;:<:<>=@>;<=? -853_266_697 89 chrM 1002 37 49M = 1002 0 AAGTCGTAACAAGGTAAGTATACCGGAAGGTGTACTTGGATAACCAAAG ]]]SQVY]]\]Y[ZY][]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]# XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_279_1056 141 * 0 0 * * 0 0 TGGAGGGTACGATTAGAAGAGGAGGCGGTACAAATAGACAATTCCTCACT =<;<<=;><:>;=<<=>=:<<>=;<;=;<==8<87<7@8=<9<9;:1:3: -853_279_1056 77 * 0 0 * * 0 0 TGTGCTCTTCCGTCATAAGAGAACCTTAAGCTATCACGGACACAGCGCCG :;76;:=;:<7::;<<<3<76;:<9=<5;87=3<=5@3<7388771:;5< -853_279_1330 117 chrM 8561 0 * = 8561 0 CTTTTTCCTTCCCTTGCTTCGGTGAGCATGAGTTGCCTTCCGTTTTTTAT 7%,117%%154#2639#1#,5'+)23%($$1#$#1<$&>-<-'9)4).<+ -853_279_1330 153 chrM 8561 37 49M = 8561 0 AACTATCCTCGAATTCGCAGTAGCCATAATCCAAGCCTACGTATTCACT JI[VXUU]]][\]]]WW]]]]\]]]]]]]]V]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:24T24 -853_292_158 141 * 0 0 * * 0 0 AACTTTTCTGGCATTTGAGCGCGTTTTGGAACTGACGAACAGATGCTCCT ===9<<;<=<<>:<:=<>::7=9<=:;9:>;;98=58>;>4=@;:,;=1= -853_292_158 77 * 0 0 * * 0 0 AATGTGCGTTTAAATATTCGGTCTTGGATGCTGATCAGCTAAAACGTATG ;=;;9;>>89=><94<;>9:;:896;;<8;3<<177=:5<6=:73<:9'9 -853_292_700 117 chrM 2055 0 * = 2055 0 CCCCACCACACCAGCCCCCCAAGCTTATACCCCGTACTCTCCTCATTACC 5.&/,#/++%):4'*/66:/.<6:82<6715=74+&>;<8:;>;=9<;9= -853_292_700 153 chrM 2055 25 49M = 2055 0 CACTTGTTCTCTAAATAGGGACTTGTATGAATGGCCACACGAGGGTTTT U[XVKS\MRZS\]ZTXZX]WT[[]]]ZUUT]]]]WVZ]]]]]]\ZUU\& XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:9C39 -853_33_1583 141 * 0 0 * * 0 0 CCCGCGCTCCCGATAATATAATCACCGAAACACGAAGACCAACAGGCCCA ),+&#,)',$##2$),%2'+#$)2),#$(+#+##&*%(-%1%#(##$$2, -853_33_1583 77 * 0 0 * * 0 0 TATGTATTTCGGTACCGCACAGANCACTCCAACCCGATAGCGTCAAGTCC /&2%,)+,+:&#:;,5*)8/%19!,%*1/%;#<952%:27#%%&4.,#-1 -853_33_1649 117 chrM 7331 0 * = 7331 0 TCACCTAATCTGCATGCAGCTCTGTCNTCATGTAGGAGTTAGAACGAAGC %1.)#$$1%%$)#)$&);=1968:42!:8<:78;888<6688=<<9<:9< -853_33_1649 153 chrM 7331 37 49M = 7331 0 TCACAGTCAAAACAATAGGCCACCAATGATACTGAAGTTACGAGTATAC XNT[[[YTQXUVKHX[]ZMOZ]SV]X]\Y[\ZVRTZ]][Y]]VNQUWSU XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:37C11 -853_34_1182 141 * 0 0 * * 0 0 GGGAACATTATACGGCTTTCGCCCCCTAGACCGCACTGTGTTGGGCCGTT >>>:9<<>><;58987;::9718859:2;75'3%(720&14%6(,51-&& -853_34_1182 77 * 0 0 * * 0 0 GTTAAGGGTGTTAGGGAACCCTANAAAGCCCGGGTTTCGTGGGGGCGGGC ;7;5*982;:/;,46::69<4<(!4295.6144&::<4*.-+%$#.#,(# -853_34_1358 117 chrM 7792 0 * = 7792 0 CGCCTCGAATATTGCCCTCAGATCAANACTGTTGACCCTCGGGCCAGGCC 9/8<9;6:<8=,>=<<;=<<9:><>:!9;@=:>?<=>><=>>?<=;??<< -853_34_1358 153 chrM 7792 37 49M = 7792 0 CTCCCTAGTGATATGCCACAGTTGGATACATCAACATGATTTATTAATA MV]YU]YXXTZ]ZY\]]]][]]]]]]]]][[]]][WX][Z]]]]]][[] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_35_596 133 chrM 477 0 * = 477 0 GGCTCCTATTTTATTACGTGTCCTTCTCAAACTGACAGCGCAATGCTAAG >978>8=9;>;:2>;;85=3;::=;::7:8:68)<5;859>?<>:<6<58 -853_35_596 73 chrM 477 25 49M = 477 0 CGATAGCTAAGACCCAAACTGGAATTAGATACCCCACTATGCTTAGCCC !SSNPYYYUQPS\VSSRPPZ[Z!!NXX\VXLL]]XUMKXYRTRKLV\Y! XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:22G26 -853_35_669 141 * 0 0 * * 0 0 TTCTTATAAAACCGCTTACCCCCTAGGTCCGAACATCTTGCAGGGTCTTG ,)&#<&38':&)-2/*4-'*+,5:0(3(+.+&,)9,&%1%*'(+.+-&&' -853_35_669 77 * 0 0 * * 0 0 TTGTGCTGTCACGGCAAGGCGGGNGAGTTGGTGCGGCTACTCTCATCTGG #4(,,&5,'-2(&5'10&)&-&3!,)+.*9&););:,8)7&3<&,/1:)& -853_365_1447 117 chrM 5643 0 * = 5643 0 ACCATTGGATTAGGCAGCCGTGGGGCATACTCATACGGTCTGACAACCAT $###$#$#(##&$&#8$277:3079<60;993;8;5+97=7)9:;:(7<6 -853_365_1447 153 chrM 5643 37 49M = 5643 0 TCCCCGAATAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTA NJUSYMK[RT[XXTY\ZZOT]]]XX\Z[XY]]]]]]]]]]]]]]]\]][ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:0C48 -853_365_890 141 * 0 0 * * 0 0 AGAAGTCCGGGCGTAGTGTATCCGAGGGGCAAAAACTCTAACAACGGACT =9?=>7:9;A=9==??:<8?<=9@6<:>>8<?=>:=6:=<?8;<398:8) -853_365_890 77 * 0 0 * * 0 0 TGTGGGGGGGGAAGGGCGTCCGGCTAACGTCTCGGCGGGTGCGGGGGGGG <:7:=<;;;<9==><<;9<>:;>>;:;7<;<68(-#6+1&5,(4'2'.*2 -853_368_1718 133 chrM 1149 0 * = 1149 0 CTCCCCTCTCAGCTTGATTCCAAACGCCGGGATCTAAGGGTAATGTTCCG ;;A>A>?A;@@<><9A;6:?A:=1><<A@6=5515A<>8397:@1<6<3: -853_368_1718 73 chrM 1149 37 49M = 1149 0 CCTTAGTCACTTAACTAAAACATTCACCAAACCATTAAAGTATAGGAGA (]Z\]SR]]]\Z]]]]]]]]]]]]]]][]]]]]]]V]]]WW]]]SO[[X XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_369_74 141 * 0 0 * * 0 0 GGGTTCAAGCATGGGAAGTGGACCACAGCTCCCGACGGTCCACACCATCA =9756::884:54:791:47358965758589965&:94,&969;(5143 -853_369_74 77 * 0 0 * * 0 0 AGCCACGGATCAGAGGGGGAACGATGGTATAGGAAGGGATAAGTCGGGGA 7:9875:8:7<69;78.$2/9&)6%0-$5)96&879'$8,&(/))6*2&( -853_375_367 141 * 0 0 * * 0 0 GTTTTTTGGCGCGAGGTTTGCGCAGAAGGGCAAATTCCGGCAGCGTCGCG 5&')&(9<1,=?>:+,)6)&7,&(05/)1,',(0'&),&(6/7,,5,,44 -853_375_367 77 * 0 0 * * 0 0 CCGATTGTCTTTCTGAGCGCACCGAATCAAGGTATCTACTAGCATAGCAT '+);,18&&&''),2&))4,%/1&5.1+-'/,'-1()))&'*)'+)&/&) -853_375_856 137 chrM 883 37 49M = 883 0 AGAATAGAGAGCTTAATTGAATCAGGCCATGAAGCGCGCACACACCGCC ]]]]]]]]]]]Z]]]]]]]]]]]]]]]]]ZTV]]]]]]]\[]]]][]UQ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_375_856 69 chrM 883 0 * = 883 0 GTTTACTTGAGTACATCCTCAAGACTGTCTTATGCCGAGGCTGCCTTTGA 8<;;>??83=>;63:@:?9=@<=>8@:?5?>8=1?;98;9<>4&40&2(% -853_381_1334 181 chrM 556 0 * = 556 0 CCCCATCATACCACATAACACCACCAAGGCTCAAGGTGTCTTAATACCCA *%-#&2+,%&#2'%#,&%&.%7;';=?>%=<?>68:?@,;=?>%)4@>=@ -853_381_1334 89 chrM 556 37 49M = 556 0 ATTCGCCAGAGTACTACTAGCAACAGCCTAAAACTCAAAGGACTTGGCG WLNHN\]]]]]]]]]]]]]]OJ]]]]]]]]]]]]]]]]\]]Z]]]]]]' XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_381_1648 141 * 0 0 * * 0 0 AGAAACGATCACAAATAACCCAAGTCTCGCCAAGAGAGCTTGATCCGAGA 8:9:;<;::::;65&:178(:8:517:35$3385)958.$<578%7:7.) -853_381_1648 77 * 0 0 * * 0 0 TTGCAGACTAGTTTCCAGGTATATTTTTCAAAGCCTTATTTTCTTTTTTT 986+0<95:8;(>5<<)58?,4)8;<5&,9/),()35)-3&7(&832$&/ -853_383_1666 141 * 0 0 * * 0 0 AACCACTGAGTACGTAGGCGGTGCAACCGAACCCCGAGTATTACCTACTG 18$+&,#./,8#8('./99#4(58);.22,;,2,%6,%)(,.,*957)(' -853_383_1666 77 * 0 0 * * 0 0 AGCGTCTTACAGACCCAACTTGAAGCTTGCAGGAAGGGGCAAACCAAACA ,,('6:.6-&7,(=15&%&<&&1(/16',.(1&&8($$&&+&)76,5815 -853_383_962 181 chrM 865 0 * = 865 0 GGCCAATTATTGCAATGGTATGTTGTGGGGCTGGGGAGGTTGAATCTCTG 5*;3<8)659?)@>?:(99>:7==<?5?;A=:<2>A<;:==<=:>;9??@ -853_383_962 89 chrM 865 25 49M = 865 0 GGATTTAGTAGTAAATTAAGAATAGAGAGCTTAATTGAATCAGGCCATG O\]SGKS[[MJ]]Z10[]WHG]]WQT]]]HI\\YBDWTW]XU\]]VY]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:8C40 -853_389_1983 141 * 0 0 * * 0 0 TGGAGCTACACCATCCCCTTAGGAGGGGGAAAACGTGGGGTGACGTGGCG 715;6741498/6459/6448/6573'569<98845/6:9$),4%.560( -853_389_1983 77 * 0 0 * * 0 0 TACCGTCTTTCGATTGACCGGTCGGTCGGGGGCCGGGTGTCCGGTTCCGG ,&9):88.&'&&/.&4&%4(6#$4531,)66,.2-51#'2/&'5845,8. -853_390_660 137 chrM 1251 37 4M1D45M = 1251 0 GTGCTTAAAAGTACTAAACAGCAAAGCTTACCCCTTTTACCTTTTGCAT ]]]!%\W]]Z]]]]]YW][ZY]]]]WU\]]]\]Y\]]\V]23]]]HFRS XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:1 XG:i:1 MD:Z:0A3^A45 -853_390_660 69 chrM 1251 0 * = 1251 0 CTAAGGCAACGTATTGGTCGCCTTATGGTAATGGTACGTATAATTAGGCT >8A==;<<<>;;A98<;:<=>;9;=;;;;>;8<;;@5;:81=:894;:), -853_392_1916 141 * 0 0 * * 0 0 GATGCATATCCTGCAAAGCACCAAGGATGGAAATTTGCGCTAAATAAGCC @;@A?>A;?@A>@@<=9A>??=<;A@9>A?=:;?=>;?<<?;<962&6): -853_392_1916 77 * 0 0 * * 0 0 GCGCCGGGGTACAGTGCAAGCGCGAACGAGACGAATTTGGGGAGGGCACT :<=<<<>>;>9<28A;<:*;:=95889<.:8;>34;6)%+6;05&::1+1 -853_393_183 137 chrM 660 37 49M = 660 0 CCCACCATCCCTTGCTAATTCAGCCTATATACCGCCATCTTCAGCAAAC ]ZZ]\[]]]]]]]YZ][[[]]Y]]]]]]]]][]XV]]SGT\ULSXY]Z[ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_393_183 69 chrM 660 0 * = 660 0 TCAGGATGGCCGTAATAATGGTGGCGTACACGCGCAAATTCCTTATGCGG =>;<<=*;4-;+9':>$427:&972<)71=;*793<1<1:;:7/9=)7/; -853_397_1746 181 chrM 9541 0 * = 9541 0 GTCGTATTCCTTCCTTGCAGATATGTCATACATCCCTGCAATCAGACGAG ,5,+2.4.7/><1:777)5;78/97?:0<582/9<880;8;98;:7987? -853_397_1746 89 chrM 9541 25 49M = 9541 0 CGCTACTCGTACTCATCGCATTCTGATTACCACAACTAAACATCTATGC DF8=*%8:ORJJNQOMD>LLOWUYMGGIQFNYV]SKPU]]VJGMFFVPJ XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:26C22 -853_398_593 141 * 0 0 * * 0 0 GACCCGTGGGCTCCACTGGTCAACGCCGTCCTATATGGCGGACTAGTCCT (,1&31,+//,&1?0,)(>91),,7(/0(1(3=/1>/)&83:5336:3-3 -853_398_593 77 * 0 0 * * 0 0 AATTTAACGTATGCGGTTTTCTCTTCTCAATCCTCACACCGGTAAGAACA (=714-?,:<,91)717878<7/9396=51,<<=,)/;8=5,:/8;7813 -853_423_1430 133 chrM 8093 0 * = 8093 0 CGGAGAACCCACCCGAGAGACATAGGGGCGAGATTCACCTGCTTTTTAGG >>5:<8<A<=:<=@<=5?:/=:8;7:=9<<87:<897:7891.=%;8/7; -853_423_1430 73 chrM 8093 37 49M = 8093 0 CTCAATCCAACAATGGCTAGTCCAACTTACATCAAAACAAATAATAGCT W]]]]]]]]]]]]]]]]]][\]]]]]]]]\Z]]]YW]]TKTO>=D?KXK XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:6T42 -853_424_115 141 * 0 0 * * 0 0 TGTTGACTAGCCGCAAGCTCCCTGGACAGAGGCAGTCTAAGCGGTCCGTT ;<<8<<>=9<=?:8:?:?8:A>;3;<=<8;<9?69>99;:;;77;:9/,; -853_424_115 77 * 0 0 * * 0 0 CCCGATACAGACCATGCGAATCGAGACGGGCTGTCTCCAGTCCAACCCGG 6>8:8<;>7?;;<,7>>;;8:<=16;:789549$%&6)'040$('%0''2 -853_439_1980 141 * 0 0 * * 0 0 TGGAGCGATTTAGACCGTATTTTAGTCTCCGCCGATAATAAGAGCAATCT 952;8:98452>4=9;:0=3)6/76-666=777+<4::&86.;'7;:+5' -853_439_1980 77 * 0 0 * * 0 0 CAATCAGTTTATGCAAGCTAAATCCCCGAGACTGAGAACGAAACTCTCGG ,<='0/71(/:.;2<<9:5>7?2<8<=9987;51?*=>:(7;<,()&:6/ -853_440_379 117 chrM 8797 0 * = 8797 0 TCCGTCGCGTCTCACGCCTCAGGAGCACTTTGGGACGCCGCTATTTGTGT 6<=8:7:366/<70;+5:9;7:;:<:899=89<8;:79><3:<8:5<8=9 -853_440_379 153 chrM 8797 37 49M = 8797 0 CCTTACCATATATCAATGATGGCGAGACATCATCCGAGAAAGCACATTC OOR\KGMS]SU]]ZY]YOQJQ]]\]]]]]]]]]\]]]]]]]]]]W[][X XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:21A27 -853_443_1353 141 * 0 0 * * 0 0 GACGGAGGAGGGTAGTGCGGGGGGCGGGCGTGGGGCTTGAGAACGGCTCA 95:19@9979:<4,82>02:3;5.46:65:5<95<7:;7;:>9*;:<:82 -853_443_1353 77 * 0 0 * * 0 0 AGCCGAAACGATTGTCGTGTAAAGGCGTCCGCCGGGTCAGATCGAAACCG 921/5>7972<889;:;9:3?>5;/95<509=7.878/4/;:.28;9/3( -853_443_704 181 chrM 8985 0 * = 8985 0 TGTTCCTGTAGTATATCACTTTTTTGCCCAGGACGGTGAGACACATGAAG 7:/><:;,?:::>;>=;:>>><9@>;>8A;=?@A@=?=?<=>AA>>AA<@ -853_443_704 89 chrM 8985 37 49M = 8985 0 GCTGCTGACCACCCACAGGTATCCACCCCTTAAACCCCCTAGAAGTCCC K[ZHA@@A!.]]\]][]]]]]]]]]]XW]]]YT\]]ZX]]]]]]]]XY] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 -853_458_262 141 * 0 0 * * 0 0 AAGTCATCTTTCCGGGGAACCCCCCGGACCTTCCTTCTCCCAACCAAAAA >>;>=;<4><=>5;=;>2=>:>1;<><'::8>(=:?5%<=9;29<<=-0< -853_458_262 77 * 0 0 * * 0 0 TTACCTGCCTCTCCCTCGCCACTTGGATCGCCGGCTGACTCTACATTACA <;:=7:;;<8<=8;=<</<9?<9::<<:;9;;84:91#2&%,-($&&%*% -853_458_615 137 chrM 5320 37 49M = 5320 0 TCTTTAGATTTACAGTCTAATGCTTACTCAGCCATCTTACCTATGTTCA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\\]]Z]]]YY]]Y][V XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_458_615 69 chrM 5320 0 * = 5320 0 TTGCTGTTACTGAAGTCATACCCTAAAGCTTAGTATGCGCGTGTGTCAAG 97899::;:<<:;;;<::9;;77:;;/8:=<6;86;34;;8695;:+5:< -853_47_795 133 chrM 649 0 * = 649 0 CGGAAGGAGCGAATACTGAACCAACACAGGTTAACTAGGAAGAAAGTGGA >?@;;?>=A@A9:>;:>=<;=>::88<;=8=<:95>08=5.(364,)1,) -853_47_795 73 chrM 649 25 49M = 649 0 CCCCGATAAACCCCACCATCCCTTGCTAATTCAGCCTATATACCGCCAT ]]\]]]]]X]]YY]]KL]]]NO][X07]]VIRZ]Z"0]]]]RKR]KF\V XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 -853_47_831 141 * 0 0 * * 0 0 TAAAATCTCGGATGGTTGCCTTGAACAAAAAGACAGCCCCGTCAAGGGAA 5A,&5,))%(()&,13(.9<2++8,>99*(%184,=/&5+)6/)0.&)64 -853_47_831 77 * 0 0 * * 0 0 TGGATACACGTAACAGAGGACCGGGCAGACTACTCGGGGGCCGTCGGTGG .)/'0(,&#*#'#)#(#(#*(#'%%1.3#$-2%$&/#$(#'%'%(##%+, -853_489_1193 117 chrM 5045 0 * = 5045 0 CCGGGTATAATCCATAATGGCGTTTTCCACTCTGCAAATACAGTAAACAG 85@06;<>)=55>29<;?)=>:<:===>5=>=>,><=?2=?<>>>=>=<= -853_489_1193 153 chrM 5045 25 49M = 5045 0 GCATACTAAGGACTGCAAGACTCTATCTCACATCAATTGAACGCAAATC RMO]UZ]]]]]\\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:16G32 -853_489_665 141 * 0 0 * * 0 0 ACGAGGAGATTAAAAAAAATGGGGTTAGATTAGATAAGATGAGAGGAGAG =>?><@=A<@@<?>>=:=:=;24&&)00+&$(4:%%'(4-#+16#-'1.$ -853_489_665 77 * 0 0 * * 0 0 GAAGAACGAGGTTTAAGATAGCGAAACCGCGACACGGACGGTAGAGTGGC ?::=-->4%&22=8)3<1;7$//6#)=(:%%<2(*,4,;7'92832:$9) -853_557_1176 117 chrM 12324 0 * = 12324 0 GTGGACGGTGACGGTAACCCCCAGCCTTCCCAGGAAGCATATAGTGGGGG ;,<<=95:3==7<9@?9;9><<?:=A5@>=?6;<@=8><>:9:>79>@;> -853_557_1176 153 chrM 12324 37 49M = 12324 0 GCTTCATCATAGCCATAGCCTGATTCCTATTCAACACCAACACATGAGA []]]]]]]]]]]][[]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:10G38 -853_557_600 141 * 0 0 * * 0 0 ACACGCCGCAAGTCACAACGAGAAGGCTAGGGACAAAAGACGGAGCAAAG 7-0'%()1&'&/65'1'/+,.*&&*17165:+0#-+'.&+''$-,$-&'# -853_557_600 77 * 0 0 * * 0 0 TTGCCCCAAGATCGATCTTGTCCCGAAAACGTAAAGGGCCCGGTGCGAGA &+&))(51(,1&&:'7:&)=.8),/5034&.&31&0.&-/$3'&)&1&1, -853_558_1569 141 * 0 0 * * 0 0 TGGGGGGAATGCGTAAAGGAGGACCATGCCTCTGAGAAACACGCGCGAGA &&(?(?(8><;;;;<=;<7<;;8<:9;<88=<:<=::?8,6658/:,181 -853_558_1569 77 * 0 0 * * 0 0 GCTACACACCCCCGAGCGGCCGGTGTAGTCGACGTGCGGAACGGTCGTAA (?16:=57:=779:995@=9?<?:>3<??=?339@?@;<@3?:8>><53? -853_558_962 181 chrM 2448 0 * = 2448 0 CTCCCCCCTCGGGGCCCTAACCTGCCGACCTCGCCCTATCGTTTACTCCT .)(0908:,&#6986$979'%<6.*772<<;>@=?=>;<>?=>>>==>?> -853_558_962 89 chrM 2448 37 49M = 2448 0 ATGTTGGATCAAGACATCCTAATGGTGCAACCGCTATTAAGGGTTCGTT \UV]]]]TS]]]XZ]]XFN]]]\]]]]]]]]]]]]]]\]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_563_1263 133 chrM 8090 0 * = 8090 0 CTCGTACTGCGTAATATACAACCCCACGTCCGTTTGGCTTAACAGGAGCT @A>=?A@><?=A<==@A==?>>=;==>:1<<:?=<=<;=:?=<&:3<3): -853_563_1263 73 chrM 8090 37 49M = 8090 0 AATCTCAATCCAACAATGGCTAGTCCAACTTACATCAAAACAAATAATA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\X\][VYZSFM\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:9T39 -853_563_1776 141 * 0 0 * * 0 0 GGTCCTGCGGGCGGTTCCCAATTTCATCTGCCCGAACATAATAGGTAACC @=?=A>A@A>A?>@>>A@>A>?>1@>>>5@?@@8>?@&8><>97(:9:5) -853_563_1776 77 * 0 0 * * 0 0 ACCTTGGACCCCTCCGGCAGCATCGGACAAGACCGCTGGGTGGTCTAGGG =A><?@A:AAA@<>AA9@==?96AA=69;<>8A3>;86&?:;6&<>7??< -853_56_1228 181 chrM 8643 0 * = 8643 0 CCCTGCGCCGAGCCGTCCCCCCCCCGACTGAACTCAGCAGATACTCGCAG (-5&(2)5(/&-:%&4&9%&-.1266:=:?<<?>>;??<:==<:?=?>;@ -853_56_1228 89 chrM 8643 37 49M = 8643 0 TAATGACCCACCAAACCCACGCCTACCACATAGTAAACCCCAGCCCATG Y[]MKVY]]]]QT]]]YY]]]]Y]PN]]]]X]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:22T26 -853_56_1324 141 * 0 0 * * 0 0 ACCATGTATGGAAAAAAAGAGTAGAGGAGGGAAACAATGAAAAACGGACC /6+58//.61366638/)&988).5::15578427=88&0:>;59:(6;< -853_56_1324 77 * 0 0 * * 0 0 GGGCTTTAACGCGTCGGCACGAGGTAAGTGGAGTGGCGATGGCACGATTC 5,(,)5+)57+94*,*3-#*4,2&2$2'(,2)-)22/)$23/1*)24'%$ -853_584_1986 141 * 0 0 * * 0 0 ATGCCACCGCCTTACTATCTTTTTTGCTGACATCACGCCGTCTCTTGGTG ,#$)*)(($3,))$&#,(&#*))&$##&#(%+&'+$,,$2$&(#&#+,#$ -853_584_1986 77 * 0 0 * * 0 0 ATAGCTTAACCGAATGCTTTAATAAATTTGCTGTTCTGAGGGCGTTACAC ,:)155*-9#7,;,)'232.:1(4,7#$3#97$%$,''+$,2(##,#%#( -853_585_1153 141 * 0 0 * * 0 0 AAGACCAACGTAAATTATCCATTCGTACGATGCCCTGGGCATTGCATTCC <>689<?9>59781>9956245:44?6,16=466;77615206+=12$#, -853_585_1153 77 * 0 0 * * 0 0 GCTCACGCCAGTACCCCAAAGGTCAAGCCTTTCAGATTCCGGCCTGGTTC 87?><89<==9>868=95:49<>7;:96<,:=;-1::::64;58/9;;)1 -853_585_542 129 chrM 580 37 49M = 1916 1336 AGCCTAAAACTCAAAGGACTTGGCGGTGCTTTACATCCCTCTAGAGGAG #(]]]]]]]]]]]]]]]]]]]]]]]]Y]]]]]]]]]]VV]]]Z]]YR\] XT:A:U CM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 -853_585_542 65 chrM 1916 37 49M = 580 -1336 AAAAGGAACTCGGCAAACACAAACCCCGCCTGTTTACCAAAAACATCAC ]]]]][]]][]]]]]]]]]]]]]]]]]YS[]]]\]]\MS]]]\TW\YTO XT:A:U CM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_611_1451 137 chrM 593 25 49M = 593 0 AAGGACTTGGCGGTGCTTTACATCCCTCTAGAGGAGCCTGTTCCGTAAT !S]]][TGDQ]WKRZWVRPLPYX[ZWTENZWXEFUX]PFRY[UUVS\QD XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:44A4 -853_611_1451 69 chrM 593 0 * = 593 0 TAATAGCAGCATTCAACTTTCCTGACCTTTACTACTACCGAACCTATGGG 28#'%)5/,)46%-#28,4,/;00,'6,/'-;4%(#9,###:++'.9*## -853_611_981 141 * 0 0 * * 0 0 GCACGGCAAGCGGTACGGGATACGTGAGGCGCGGTAAGCAAACCCGATCC ;=9===@::A><;<6><=;:@8;;==8<?:<<==<<3=<&>55=9;38=; -853_611_981 77 * 0 0 * * 0 0 GACCTGAGCAGCAGTCGCCTGGAGCAAGCCGGCCGATATAAATCGATGCT 85275/655287&4<7<5889<176837797:835.6&44427/'48$71 -853_626_1431 141 * 0 0 * * 0 0 ATGTAGGTCCCTGACGGCCCCACGGAGGAACCTTAGCTAGGCCAACAGAA >5<:5897:<;4==:;7>;9;<979>89?<7;;:<9:6<49;8644.1+$ -853_626_1431 77 * 0 0 * * 0 0 TGGGTCAATGCCCTATATGACATTAGGTTCGCGGTCGGTAACGAACAGCA 11-/8<:967:;959<<:5:<21781187057585;;*6-5$%8,2&%9$ -853_626_841 181 chrM 10675 0 * = 10675 0 CCCACCCGCCGTTCTAGGACGGCCACATTTTTATTAAGTCAGCCGGGATC ,)4,(85:>=?6@6>=7<=<>;>=<;?=A=<>>AA>@>A<>@?@A@?@AA -853_626_841 89 chrM 10675 25 49M = 10675 0 CCTCCCACTCTTAGTCGCACTAATCTCTATCCAAAACCTAACAGGCTCA R]]]XZ]]]]RLZ]]]]]]]\T]]]]]]]][]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:15T33 -853_628_1041 141 * 0 0 * * 0 0 CTATCGCTGATTTCACAGGAATCGGTCTTATAAGTTTGACCCCTTTTTTT <9)9<7839<:>/<<;>3'A9<36=<9$#9<8((<=8'&;97'7>;#2(8 -853_628_1041 77 * 0 0 * * 0 0 TGAGCAAGACCCGTAATCTACAACGACCAGCGGTTATGACAATGTATAGC 978:5,7295,/889'529//,,:55227($128:'9*83,4&29&,%57 -853_628_1976 117 chrM 620 0 * = 620 0 CGGACCCAGCAGTGTGAATCTGGGTAATCGCGCTGAGTGACAGCTCGGAA -&-,&&$9/84359:0;=1<7:::8?>.<9<:<:8A869=?=<;9=:<@< -853_628_1976 153 chrM 620 37 49M = 620 0 CTAGAGGAGCCTGTTCCGTAATCGATAAACCCCGATAAACCCCACCATC ON]][RQ]][W\]]]RR]]]YZ]\\]Z]]]]Z]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:17A31 -853_630_1363 137 chrM 2399 37 49M = 2399 0 CGCAATCCTATTCCAGAGTCCATATCGACAATTAGGGTTTACGACCTCG ]]]]]]]]]]]]]]]]]]]]]]]]]\]]]*,[]]IEZ]]]V[]]/1\SH XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 -853_630_1363 69 chrM 2399 0 * = 2399 0 ATAACAAAAGATTGAGGCCCATATTAGGTATTACCGCAAAAGGTGAGACG A@A=AAAA>A?@><?>@AAA8=:A@:?>A89:@>?=<?=@8A;;=59@8A -853_630_585 141 * 0 0 * * 0 0 GGCTGGACTATGCCGATGCGCGGGCACGGAGGGATCCGGGACCGGGAGGA &#$%#)%&#%#$$&(.##$##)-$&%%##&&.#&#$&-$#&'+'#$,,$& -853_630_585 77 * 0 0 * * 0 0 TAGTGTCTTGGTTCGTGTAGAAGTGCCTGGCTTAGCTAAATCGAATTGCT 15/,/(/))=&,)>,):(>:<=/,)/3>:,,49/(6)/;/',.11.+9'4 -853_648_1618 141 * 0 0 * * 0 0 TTGATCCTATGCGGACGATTCCCGCGCTTCTGCAGTTGAGTTTTTTAAAA 1/(,/3<)+7%'/,%'&1)'09';/5.)%,)1&*111&+&5&0$4%$581 -853_648_1618 77 * 0 0 * * 0 0 GAAAAGGGGCAGAATTTCGAGGGGAGTTAGGGCACAATCCCGCTAGCAGC &?,//&6(=77)):,)7.)933<)4%=:-8,831885//@3@:154',&3 -853_649_292 117 chrM 1156 0 * = 1156 0 GGAATTCCTGGAGAGGGGGGTTGGGGGGTTGAGAAAAAGGGGGGTTGGGT ::4572;408<;82=:;?::5;9=:<::98=<57:<;;>?;;=>:;;>9: -853_649_292 153 chrM 1156 37 49M = 1156 0 CACTTAACTAAAACATTCACCAAACCATTAAAGTATAGGAGATAGAAAT VV]XR]\]]Z]]]]]]]]]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_669_1548 141 * 0 0 * * 0 0 TCGGGGACCGCCGCGCTCTGGCAGAGAGCTCCAGGGCGGGTGCCGGCAGG 8<977;>:=:;=:9><:9<;795<65>2>;;99=9/<4<8113/78,((& -853_669_1548 77 * 0 0 * * 0 0 TTAGCTAGACATTAAACCATCCCTCTCATCTCCGGTTAACCCCGCCAGTT =;=<<=<<;=61:977/7;:96::<8.7<8;39:;976;;63)9;1+2:1 -853_669_616 181 chrM 8554 0 * = 8554 0 GCCGAACATGCATGCAGGTGGTCAACTGTTCCTGTAGTATATCACTTTTG 3;>8==8=;>:A?:>A<@9>A=?=@<9<?>>A?@@>@@A>@<@>>=><AA -853_669_616 89 chrM 8554 37 49M = 8554 0 TTCTACTAACTATCCTCGAATTCGCAGTAGCCATAATCCAAGCCTACGT YKKZ][YXT[\]]XZZYSM]]TNZ]WUXZ]]Z[]]]\TY]]][Z]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:31T17 -853_678_1204 141 * 0 0 * * 0 0 CTTAAGAGAAAACCTGCTAGCAAACAAAAATAGGGGGGGAACAGAACGAG 737,88957/39486691$92<:77<:1060:9),4&/)),)(').4+,' -853_678_1204 77 * 0 0 * * 0 0 GCAACCCGTACAAGTACAAGTACAAGTACAAGAACAAGAACAAGTAAAAA )=1=89;35:6:=:6;9A<5361?>1/6/=<'/;,A=&,:&>=/(5&A7& -853_678_1908 137 chrM 14105 25 49M = 14105 0 ATGTCATCATTATTCCCACGTGGAATCTAACCACGACTAATGACATGAA ]]][]]URX]]]WV]]UO\]]]ZXTRYNQX]]WVPNTOVXWUSRDLWEN XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:37C11 -853_678_1908 69 chrM 14105 0 * = 14105 0 TAATAGGTCGATAACGTTAGAGACGTAAGAGGAAAGTAACTGCCGTCATG 8@?:57<:::?;=><=:<?:@=?>9=@=97?;>=7<7?:66<:;:9;=83 -853_718_1061 133 chrM 1329 0 * = 1329 0 TGTCGAATATGCATTAAATAAGACTTGGCCGACTTGAAAAGTGTTGGCTT >A><@?@>@=>>;=<>@===<?=;>@A<=9:>;>=6==8<89:5>8>>;< -853_718_1061 73 chrM 1329 25 49M = 1329 0 AGAGAACTTAAGCTAAGCACCCCGAAACCAGACGAGCTACCTACGAACA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]\Z]]]]]\V\]]X\ZUSU]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:43T5 -853_719_183 141 * 0 0 * * 0 0 TAGAGAGCACTCCAGGGGAAGGGCCCAGAATCAAATAACAACTAATAGAA 99387)&%.,./'%682&.53/$)*65-440/#%$1$##.&$##2#,%$, -853_719_183 77 * 0 0 * * 0 0 ATTTTAGTTTACCTTCTTGAGTTCTACCTTAAACTTTGACCTCCCACCCC )/31.$%5'/#)',4#)'+$&7%%,&)#&&#%($$$$$%###%$'.##)' -853_775_1932 133 chrM 5645 0 * = 5645 0 GTTTACGCGTCCCATTTAGCTTCGCCTATTTTCCCGTGGAGTGTCACCCA ((>3,,(/7&(A,3:5('4&<<?3;/,;8=()7@=:(3556(9:>/1317 -853_775_1932 73 chrM 5645 37 49M = 5645 0 CCCGAATAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTACT ]QHY]Z[TDO]]]][[]]]][]]]]]]]]]]]]]]]YY]\]]ZOKZUW] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 -853_776_924 141 * 0 0 * * 0 0 GTGGGGTTAAATAGTAGAAGCGCGGACAGGTCCACGTGGAGCGCGAAGAA 88;9855?888?<.;=:54875'67+1#9661#474.5374&#1:2*%88 -853_776_924 77 * 0 0 * * 0 0 GGATTGTTACGTGCGCCCTATACTGGAACTGACCAGTCATTGACTGGAGA -212<+87/3582?/4731,<2(A:956/<3148*:7/28069392;:7/ -853_7_132 141 * 0 0 * * 0 0 NNGNNNGCNGNGAANGCNTANCNCNNTANNANNNGCCGNGAGNGNANGGN !!&!!!5#!)!)&+!2&!',!&!'!!1)!!1!!!4()$!/&,!'!'!0$! -853_7_132 77 * 0 0 * * 0 0 NNGGNGATGNNTGNGNNGGGNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG !!$(!,#&#!!&#!#!!#($!%$!#!!#&%#$(!#!#!!!!)(*+!!!,2 -853_7_141 141 * 0 0 * * 0 0 NNGNNNCTNCNCCGNGGNAANANANNAGNNGNNNGGGGNGAANGNGNGGN !!,!!!),!5!3)+!//!),!3!9!!&/!!+!!!**#)!.)(!(!(!43! -853_7_141 77 * 0 0 * * 0 0 NNGGNGCCGNNCANGNNGGCNAGNCNNGGACCGNANGNNNNAGGGNNNGG !!54!9518!!1&!5!!/31!)0!6!!)533/:!5!6!!!!)/<:!!!,7 -853_7_146 141 * 0 0 * * 0 0 NNCNNNCGNGNGCGNGANCCNGNCNNCGNNGNNNCTCCNGGTNCNTNGCN !!1!!!33!4!#15!7(!51!1!3!!.5!!5!!!/)/,!&-/!,!.!4,! -853_7_146 77 * 0 0 * * 0 0 NNCGNCACCNNGCNGNNGCTNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG !!10!/240!!0)!2!!#&'!'5!(!!(.-*$3!*!4!!!!+#(.!!!.( -853_7_269 141 * 0 0 * * 0 0 NNCNNNGCNGNGCGNAGNACNGNCNNGCNNTNNNGGCANCCTNGNTNTGN !!3!!!/.!+!*4,!42!)8!2!3!!62!!0!!!84;)!)7.!5!/!&%! -853_7_269 77 * 0 0 * * 0 0 NNCGNGGGGNNGGNGNNGGGNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG !!%&!('#%!!#*!#!!/##!&)!$!!'$',%,!%!2!!!!3,,*!!!,2 -853_7_321 141 * 0 0 * * 0 0 NNCNNNACNGNGAGNCANCCNANGNNGGNNGNNNATTGNCCCNGNANGGN !!$!!!&'!.!*##!6$!#1!+!#!!.+!!)!!!36(#!*5'!#!4!+(! -853_7_321 77 * 0 0 * * 0 0 NNGANGTGGNNGCNTNNGGGNCGNCNNCGAACGNTNANNNNGAAANNNGG !!+$!+21(!!*-!.!!)#1!8/!9!!6,3+%6!'!,!!!!2&6,!!!&2 -853_7_386 141 * 0 0 * * 0 0 NNGNNNTCNGNGCCNCCNTCNGNANNTCNNANNNGATANTCGNCNANGGN !!;!!!86!=!;9=!%5!58!<!2!!62!!&!!!&3:&!//8!*!7!5*! -853_7_386 77 * 0 0 * * 0 0 NNCGNGTAGNNGANGNNGTCNCGNANNGAAGTGNTNGNNNNAAAGNNNGG !!31!:7-%!!:,!-!!21,!77!)!!227:9:!2!;!!!!)',%!!!86 -853_7_405 141 * 0 0 * * 0 0 NNGNNNAANANAAGNTCNGTNANGNNTGNNTNNNCATGNCGANGNCNGGN !!=!!!;:!>!<8=!9<!:<!=!>!!;8!!;!!!;//1!&(&!/!'!*-! -853_7_405 77 * 0 0 * * 0 0 NNGCNAGGCNNTCNGNNAAANGTNGNNAGAAGGNANGNNNNATCTNNNCG !!<8!8;==!!;>!:!!7:7!7;!8!!7:>48=!2!=!!!!536*!!!;: -853_7_411 141 * 0 0 * * 0 0 NNCNNNAANCNAAGNAGNCGNCNGNNGGNNGNNNCAGANTCGNGNANGCN !!$!!!-#!#!*#+!,&!2*!#!#!!%'!!)!!!'$)$!/-#!#!'!,+! -853_7_411 77 * 0 0 * * 0 0 NNCANGAAANNTTNGNNAGGNAGNANNGAAGGGNGNANNNNAAAANNNAA !!,/!13;,!!&,!+!!2/%!*1!$!!%*)+#,!,!&!!!!'-'&!!!++ -853_7_445 141 * 0 0 * * 0 0 NNGNNNTTNANGTTNATNTCNANCNNCTNNGNNNAAGANGGGNGNGNGGN !!&!!!0%!#!,&'!,'!$$!&!,!!&)!!'!!!..*&!#,7!1!.!10! -853_7_445 77 * 0 0 * * 0 0 NNTANTGCANNACNCNNCGANCCNTNNTACGGGNCNGNNNNTGGGNNNGG !!&'!*+'#!!'%!&!!,%#!)%!(!!'##$&'!#!$!!!!$$#,!!!#$ -853_7_469 141 * 0 0 * * 0 0 NNCNNNCANTNTCTNTTNTTNANTNNAGNNCNNNGTTTNGTANGNTNTGN !!#!!!%%!$!))+!$,!*%!.!(!!.#!!#!!!#&##!##&!#!#!##! -853_7_469 77 * 0 0 * * 0 0 NNGGNACAGNNGANTNNGAANGCNANNAAGGAGNGNGNNNNAGATNNNAG !!##!*($&!!##!#!!%))!#1!%!!(,##$.!#!(!!!!##'#!!!&$ -853_7_53 141 * 0 0 * * 0 0 NNCNNNCGNTNAGTNGGNGGNGNGNNGGNNGNNNGGGGNGGGNGNGNGGN !!0!!!10!)!)0)!,-!##!%!%!!##!!'!!!%+&)!%$/!)!$!/(! -853_7_53 77 * 0 0 * * 0 0 NNAGNCCGANNGGNGNNGTANGGNTNNATTGCGNCNCNNNNGGGCNNNCG !!14!3.15!!47!4!!8+1!$9!(!!,..1)&!3!(!!!!1/9&!!!,3 -853_7_78 141 * 0 0 * * 0 0 NNGNNNAGNGNGTGNGGNCCNGNGNNCGNNCNNNGGGGNGGGNGNTNGGN !!#!!!5,!$!5&+!#8!)#!5!%!!3%!!'!!!$$8+!&)%!)!(!*#! -853_7_78 77 * 0 0 * * 0 0 NNCTNGGGGNNGGNGNNGGGNGGNGNNGGGGCGNGNGNNNNGGGGNNNGG !!##!###$!!##!&!!#$&!$&!&!!%&)'#'!$!#!!!!&)*(!!!&* -853_7_88 141 * 0 0 * * 0 0 NNTNNNGGNGNATGNCTNGGNGNCNNGTNNANNNGCTANCTGNCNGNTAN !!1!!!42!5!,25!24!77!4!3!!81!!,!!!5147!)/6!,!,!1&! -853_7_88 77 * 0 0 * * 0 0 NNGTNGGGCNNCTNGNNATTNTANCNNACAGGANCNGNNNNGGGGNNNGG !!61!5551!!13!4!!.,)!/,!3!!.)/17+!&!5!!!!-'0.!!!,5 -853_815_1179 141 * 0 0 * * 0 0 GCGGACTAGAGACGTCAACTAGGAGTAGCCGAGTTCAAAAGGGCAAAGGA <'#37,/*;1;7,;45-738,(/3,+.%21:/&93('(+7#*(,8(*(&/ -853_815_1179 77 * 0 0 * * 0 0 ATTCAATGGACTAAATCCGGGACCGAGGCGCGTCTGGCAGTCGACAGCTA 67827:>5597:=:<6<,224348025,71:879724,2(7/29)92222 -853_816_193 137 chrM 2616 37 49M = 2616 0 AGAAGCGCCCTCAAACTAATAGATGACATAATCTAAATCTAACTAATTT ]]]]]\]]]]]]]]]]]]]]]\\\]]Y]]]]]VY][X]]Z[NL[WMQT[ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_816_193 69 chrM 2616 0 * = 2616 0 GTGGTCTGAGTCAACCTGTAGATGTTTCGTGCACGATAACCCAGGGATTC ><><<;<@;9;>;=::>:==8<::=8>7<<:</=<8=@<?878>?<6?<6 -853_827_2017 181 chrM 5150 0 * = 5150 0 ATTTCGAATCGCACGCGCACACAGTTCGAGGATCCTCTTAAACGTTAGCG ++6=<9;<8<7935;5480<::;<;::8;8;7994=<8?:=;8;>::8?< -853_827_2017 89 chrM 5150 37 49M = 5150 0 TTTTAGTTAACAGCTAAATACCCTAATCAACTGGCTTCAATCTACTTCT FCHRRSLJSMOW\\Y[]YZOIDI][\]]]]\Y[Z\]ZUUZ[Y\]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_828_1138 141 * 0 0 * * 0 0 GCACTATCGTGTGGCCCGATGTCCGGTCCTCCTCTCGGTTTTGGACCTGT &+&&)')$#,&,#&&')&%&'/&$$'#####&##%$$###&&##&$$### -853_828_1138 77 * 0 0 * * 0 0 TTAAAAGTCATGAGCGTACAACACGTGCCATCTGTCCTTAATACCTATCA &)&$&)&&&&)&&%&&&&)&'&&&%&%&&%%&#&&&&&&&&&&%$&&&#& -853_82_2023 181 chrM 1195 0 * = 1195 0 CTAGCTCTGTACGCGGCTTATGCGTCTCTTAGGCTCCCTAATTCTAATAC 75:5956654=71?9858;96;9>;;:?8:<=8=45762<?57<<>79;9 -853_82_2023 89 chrM 1195 37 49M = 1195 0 AGATAGAAATTTTAACTTGGCGCTATAGAGAAAGTACCGTAAGGGAACG XX]]VQXWSNT]]]WV]\Y]]]]]]]]]]]]W\]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_83_197 141 * 0 0 * * 0 0 CCGTCTCCCGCGCCGCAGAGACACTACTTCCTCGCCGCGGTGCGCCGGGC /9;58179583997;5591<26;797=55:995$)&$'#-$(&&'(*(%& -853_83_197 77 * 0 0 * * 0 0 GGCAGATGATATGGACTGAGTGGGGGGGGAGGGGGGGGGGGGGGGGGGGG 8;95;6:96698;6;89:3=%(-*$&(+$&#%.''+(.-%-/5.*.*4/5 -853_843_1357 133 chrM 13593 0 * = 13593 0 GTTTGCTAGAGTCGTATGTAGTCGTCGTTTCACGTGACCGGTCTACACCC >:AA8=?:??:?@>@?><>8<;<:>31=>:8(=8<74=,9;?5;724>48 -853_843_1357 73 chrM 13593 25 49M = 13593 0 TCCACGAGTAACCTCTAAAATTACCAAGACCCCAACAAGCAACGACCAA ]]]]]]]]]]]]]]]]]]]]]\]]]]]VU]]]XJQ]]\UYYXTOX]ZQN XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:45T3 -853_843_799 133 chrM 16042 0 * = 16042 0 CTACACCTGCGTATCGCCTCGAAAATGCTGTCACCTTAAGCACGTTTAGG @>>=A:AA=A9A>@4:=>:8:2?:@23;>;;9=1<=;=933'58>;9>:6 -853_843_799 73 chrM 16042 37 49M = 16042 0 GAAGCTGGACTTAAATTGAACGTTATTACTCCGCATCAGCAACCATAAG ]]]]]]]]]]]][\]]]VT]]]YZ]]]QR]]]]W]]]UV]]]OL]]TQT XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:27C21 -853_844_231 141 * 0 0 * * 0 0 GGGGGACAGGTGGAACTGGTAGACGGTACAAGGGAGAGCGCAGGGGATCA 4289*5)*(/(/+;=$/806&&*76&,.19&4754&2/9/92>3;)11:, -853_844_231 77 * 0 0 * * 0 0 TTAATTCTAGGTTTAAATGGAATTAAGATCCTGAGCCGGCCAAACCCGGG &&8151/>,/,/8,(?<=&('(?/;8&8))<?11=39%718,$,./9*89 -853_844_634 141 * 0 0 * * 0 0 TCGAAAGCTCAACATCATCCGGCAGGGCGTAAAACTGGTCGCCCATTGAA >A;887A=2@9>;.;<67,;?::2:<;9#?<97/7<944:;):&*>90,6 -853_844_634 77 * 0 0 * * 0 0 TCTATCCACCGAAGTCAGTGTCTGAAGTCTTAGACACGTTCGAAACCAAT 7#56860817:11777)66,9&>7%;188/87,9&5608#9.764682%0 -853_877_1974 141 * 0 0 * * 0 0 GCGTCCGCAAGGCGCGGAGCCTGAGAAAATTAGCCCGCGAGAATGACTAT 76187559,719324834789;;285501;<<65:<<:9;;99=<830+: -853_877_1974 77 * 0 0 * * 0 0 TTGCCGTGAGGCGATTGTACCAAGATAAAAACAAAATAACCTAAAAACAA *,*-4'#)74,',)(*##,#&#+#%##&#$'##%##)(#$%##$#(##'# -853_878_1093 137 chrM 2417 37 49M = 2417 0 TCCATATCGACAATTAGGGTTTACGACCTCGATGTTGGATCAAGACATC OZ]]]Z]]YWI8J]]TJX]]N;K]]RAN]N;3@XZH9=NYH>T]UE!/X XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_878_1093 69 chrM 2417 0 * = 2417 0 GGTTGGAGCGGGATAGCAAATGAGGATCCTGTCACAATCTCCCACTCCGA @@/&3,(,,5533/161?@57/1,3>3<<8>53)65=1)735,1A<;:8@ -853_887_1933 181 chrM 11695 0 * = 11695 0 GGCGCCAAGCCGTCCGACGACACTTGCGATGTGGGGACAGAGGGTGTGAA ))%,&))3#=4:=;<=:>8<:9=;?@<=<<>?A==;9<:><<<7@>>?4< -853_887_1933 89 chrM 11695 25 49M = 11695 0 CAAACACGGCTCTCTCAAACTTTTAAAGGATAGGAGCTATCCGTTGGTC W\]]UJN][WZ\]]]OR]]]]]]]]]]]]]W[]]]TQZ[]JCQV\]]Y] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:6T42 -853_888_1016 141 * 0 0 * * 0 0 TGAAGACCGGGGGTCCTATGATCAACCCAACCATGAATTGTCACAGACCG &.+/)(-#'('&5#405$2220&,/03$0+)9$(#)4%%&&-,#&#),'# -853_888_1016 77 * 0 0 * * 0 0 TACGGGGGAAGGGCATCCCGACGTTCAGGGCTCGGCACCACCCCAGAGGA &(,,//6)))'<&/9&')/,,)(,&,&&9&<)/'3,),/&&)7:)(/),/ -853_943_830 141 * 0 0 * * 0 0 AACCTACTATGCTCATGCTGGAGAAGAAAAACACCGGTGCCATCAAACCA (>,5+''#1):,#>#10#%2:%$3&(4#.#..#*39(#':6,$'%))##4 -853_943_830 77 * 0 0 * * 0 0 TATTTTTGGAGTACCCTCCTGTACCAATAAACGTGGCCCCGCCGGGTGCA 61)5/6,34'20)%@#)#<%#$<)6+33&6&')4&0'0*(#'215.$'9/ -853_944_156 117 chrM 2054 0 * = 2054 0 TTCGATCAGGGTACGACTGTGGAATTTTGAGTACTGCGTCTGGGACATTG :<3><=.:><?19>99.;>;67:>==<=A=?;::>=8<??>>>A<<==;; -853_944_156 153 chrM 2054 25 49M = 2054 0 TCACTTGTTCTCTAAATAGGGACTTGTATGAATGGCCACACGAGGGTTT PV]]\XV[]]]X[]]]]]]]]XW]]]]]]]]]]]]]]]]]]]]]\]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:10C38 -853_946_129 181 chrM 7799 0 * = 7799 0 ACGCCACGCAGCGTAACGGCAAGCGCGGGCTCAGCACGAGACCTTGCGCC '&($%,4().)8%.4::%$'492/(88.$0:<,&,=7/.,7,$',:;<:8 -853_946_129 89 chrM 7799 37 49M = 7799 0 GTGATATGCCACAGTTGGATACATCAACATGATTTATTAATATCGTCTC ORU\]]\\V[]]]]]SS]]]]]]]]]\]]]]]]]]]]]]]\Z]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_946_1345 141 * 0 0 * * 0 0 TGGACCCGAATCCAAGCAGCCTGCGAACAAGGTAGGCGCCTGGTTAGCCA ?A<:<<A:=<:@6<><@:=>1@=<==<4:>:=<:>985::685;:2689; -853_946_1345 77 * 0 0 * * 0 0 GCGCCCGCCGTCGGGCTGAAGAGGTCGGCCCCGACCGCCGTCACCACCAG 8386936:688649:8;80:8#,#/,#1#-3#,#)4)2#42)&&12'2%/ -853_967_1892 141 * 0 0 * * 0 0 TCGGGCAGATGGCGTCAATATCCTAATCCCGCGGAGCGGGCAGTACGGAT :>;<<<@==;<<<>;2-#8>87'9><*%=@271=A6//=;)7,;=1).:5 -853_967_1892 77 * 0 0 * * 0 0 TATAATAGGTAAGTTCTGCTCGGAACATATTTTACCCCATTCTGCCTACC 8;64;9:878<=<9;:8>5:;9<>:;>769&;1://6&8;):1890:471 -853_968_1657 117 chrM 1985 0 * = 1985 0 CATAACAACATTCGGTAAGGTTTGATTAAAGTCAGCTCGTTGTTGGAAAA &%%)&')##$*,#$#$(#####,&#*%&$+##36<6<<8;99<9<88::; -853_968_1657 153 chrM 1985 37 49M = 1985 0 GAGGCACTGCCTGCCCAGTGACATCTGTTTAAACGGCCGCGGTATCCTA \TZ]Z]ZTY[[[]]]]Z\]]]]]]]]]]ZY]]]\Z]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_968_485 141 * 0 0 * * 0 0 GAATGGAGGCGTGCATTTGAAAACGAGGCCAGGAAACTTCAGTACAGGAA =<:@<;:>@AA;>A9?8===<=>9<4;=7:2==9;94?@>.,;&;,=<&0 -853_968_485 77 * 0 0 * * 0 0 CCCGGTCGTCCGTTTGCGGTAAACGGCAACACAAAAACCCCAACCTTACC <=?;>==@<;>;<=><<?:<=?>=;?<>>=:><>=>7;>>7;8<::8:>< -853_968_835 117 chrM 7621 0 * = 7621 0 GTGTCCGCGCCGGAGCCGATTAAGGATATTTTCCCGTATCCATGACTTAT -986=;>48<==:<==<5<<9>::<=>>8<;>;?>><>=@:>:?<:<;A6 -853_968_835 153 chrM 7621 25 49M = 7621 0 TACTACGGCCAATGCTCAGAGATCTGCGGATCAAACCACAGCTTTATAC ZLCP"!ATX[NN]]]RR]]]Y[]]]\]]]]SS]]]YZ]Y]USVY]UU]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:8T40 -853_985_1608 141 * 0 0 * * 0 0 CCTCGAGTAAGGAAGAGAGAAGGGTACGATTATAATCCTCCCAAAACGAG @798;<9::<9;<:=?9>8;=9:97?68?=;1<:58:3/97%2)%-)#&# -853_985_1608 77 * 0 0 * * 0 0 TGTAAGCTATTGATTATACGCCCAGATGGACAATCGACAGGAAGGGAGGG <:99:7<::<:>,<<;=:<97?5/:/;:2::::58<921;>:::<=19=< -853_985_616 181 chrM 231 0 * = 231 0 GGTGGGTTGATATCGCGTCACTTAGGGTGGTAAGGTATGGTATCACAACA )$)($$#1&,&,#)#1&6=3;<=?;568=:;>@868@@@4>=@>>8A?@= -853_985_616 89 chrM 231 37 49M = 231 0 CCCCACGGGACACAGCAGTGATAAAAATTAAGCTATGAACGAAAGCTCG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:45T3 -853_991_1890 133 chrM 3733 0 * = 3733 0 AGGGGGGCAAGTTCAGGTTAATATATAAGTTTAGCCCAAAAATTACCTTC >,>)&,(->>.32(<@>1&=)/:/)>/&+((>,;)3;&1>=;,%63=7:9 -853_991_1890 73 chrM 3733 25 49M = 3733 0 ATGTCTGACAAAAGAGTTACTTTGATAGAGTAAAACATAGAGGCTCAAA ][]RO]]TDABJVW]UU]XURWUR]]]]]SO][IHW1(NUSD!!H\6$: XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 -853_992_1006 133 chrM 5367 0 * = 5367 0 CTGAATCAATGAGCCCACCACCACCCAAATGCTACCTACAGCAGACAGAG ###(#$#$0###1(###+,'##*##%#%##&##0####$&'#*%*'%#+# -853_992_1006 73 chrM 5367 37 49M = 5367 0 CATCAACCGCTGACTATTTTCAACTAACCACAAAGACATCGGCACTCTG ]]YT]]W\\U]YOT]]]]]]ZV][]]RT]][Z]][]][\ZUSYTRXQPY XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_992_1044 141 * 0 0 * * 0 0 ACAGAGGCCCACCTGCTCACTCGGACAGCCGCCCACGATGAGCACTGCTC :70.7143#46<257:>/,488938=96958:/75;29)715689/8(&+ -853_992_1044 77 * 0 0 * * 0 0 TGCGTCGTGCGCTACTCCGTATTCCCCGGTAGGGGAACCTCGTAGGACGG &/5-<)&(':4+<3838&&4&7'1-17&,/11044//$&,%8,%$4,-%# -853_993_143 141 * 0 0 * * 0 0 CGGGGCTCCAAGCTCCCCATCGAGAGACTGGGGTCCGTACACCAGACTCG ;759<65;<>97<::==@/8;6;6<:;85==1::;;:97<,9=937:79: -853_993_143 77 * 0 0 * * 0 0 CGGAACGAGGGAGTATAAGCATAGTCCCGCATCAATAGACCTATGGATTT <788::9:8:77>3,6;<768:?:39<=:611>9751:;8:55895(>;3 -853_996_1656 113 chrM 16037 25 49M = 1018 -15019 AAATTGAAGCTGGACTTAAATTGAACGTTATTACTCCGCATCAGCAACC YVP/1W[[\]YY\]\\]]]]ZT[]][[]]]]\]]]\Y[[ZWY\Y\]]]] XT:A:U CM:i:1 SM:i:25 AM:i:25 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:32C16 -853_996_1656 177 chrM 1018 37 49M = 16037 15019 AGTATACCGGAAGGTGTACTTGGATAACCAAAGTGTAGCTTAAACAAAG ]]]\]\]UQ]]][]]][]]]]]XW]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:25 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_996_488 141 * 0 0 * * 0 0 GCGTACCTGAACTTGGCCATTAAGAGCAGAGCCACCAGTGTCGCGGGGGC &-'*/*/8)$2(,.22&10&,))0/+,$38'(531,)2)'((%'6'(-1. -853_996_488 77 * 0 0 * * 0 0 TGCCCCGTCCACAAAACTCTAGACACACGCCGACCTTGGCAAAAGAAGAA .&'6,#*<(%'8('(,8.4'.1*9)81-0(*0$&2+-)5,0/,1*21#%* -853_997_740 141 * 0 0 * * 0 0 GTTATCGGGGGTTTTCGCAACATAGCTTTGGTAAGCATTTCTGCACCCCT (=('(,(,+<=3?<;::97<;::9<;8:4;<;9::=38:;?=;1<99087 -853_997_740 77 * 0 0 * * 0 0 GGGGGGAGATCGGTCGTCCTCGCGATTCGACGTAGGGAAGGAAACCGAAC 9&5;'.1')&(4&2&(,'))=&,,-.&+,&)(.,7/2)(4/-'95,4,<3 -@PG ID:bwa PN:bwa VN:0.5.9-r16 -@SQ SN:chrM LN:16660 Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. 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commit/galaxy-central: carlfeberhard: fix to gff_to_fli.py to avoid breaking unittests
by Bitbucket 20 Aug '12

20 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/c2f41b36be5f/ changeset: c2f41b36be5f user: carlfeberhard date: 2012-08-20 19:50:12 summary: fix to gff_to_fli.py to avoid breaking unittests affected #: 1 file diff -r 0b58ac6510c5df73ffb1634f874c5283e3d2d068 -r c2f41b36be5f3df122abc57162e0d7e134e1cfbf lib/galaxy/datatypes/converters/gff_to_fli.py --- a/lib/galaxy/datatypes/converters/gff_to_fli.py +++ b/lib/galaxy/datatypes/converters/gff_to_fli.py @@ -6,48 +6,52 @@ from galaxy import eggs from galaxy.datatypes.util.gff_util import read_unordered_gtf, convert_gff_coords_to_bed -# Process arguments. -in_fname = sys.argv[1] -out_fname = sys.argv[2] +def main(): + # Process arguments. + in_fname = sys.argv[1] + out_fname = sys.argv[2] + + # Create dict of name-location pairings. + name_loc_dict = {} + for feature in read_unordered_gtf( open( in_fname, 'r' ) ): + for name in feature.attributes: + val = feature.attributes[ name ] + try: + float( val ) + continue + except: + convert_gff_coords_to_bed( feature ) + # Value is not a number, so it can be indexed. + if val not in name_loc_dict: + # Value is not in dictionary. + name_loc_dict[ val ] = { + 'contig': feature.chrom, + 'start': feature.start, + 'end': feature.end + } + else: + # Value already in dictionary, so update dictionary. + loc = name_loc_dict[ val ] + if feature.start < loc[ 'start' ]: + loc[ 'start' ] = feature.start + if feature.end > loc[ 'end' ]: + loc[ 'end' ] = feature.end + + # Print name, loc in sorted order. + out = open( out_fname, 'w' ) + max_len = 0 + entries = [] + for name in sorted( name_loc_dict.iterkeys() ): + loc = name_loc_dict[ name ] + entry = '%s\t%s' % ( name, '%s:%i-%i' % ( loc[ 'contig' ], loc[ 'start' ], loc[ 'end' ] ) ) + if len( entry ) > max_len: + max_len = len( entry ) + entries.append( entry ) + + out.write( str( max_len + 1 ).ljust( max_len ) + '\n' ) + for entry in entries: + out.write( entry.ljust( max_len ) + '\n' ) + out.close() -# Create dict of name-location pairings. -name_loc_dict = {} -for feature in read_unordered_gtf( open( in_fname, 'r' ) ): - for name in feature.attributes: - val = feature.attributes[ name ] - try: - float( val ) - continue - except: - convert_gff_coords_to_bed( feature ) - # Value is not a number, so it can be indexed. - if val not in name_loc_dict: - # Value is not in dictionary. - name_loc_dict[ val ] = { - 'contig': feature.chrom, - 'start': feature.start, - 'end': feature.end - } - else: - # Value already in dictionary, so update dictionary. - loc = name_loc_dict[ val ] - if feature.start < loc[ 'start' ]: - loc[ 'start' ] = feature.start - if feature.end > loc[ 'end' ]: - loc[ 'end' ] = feature.end - -# Print name, loc in sorted order. -out = open( out_fname, 'w' ) -max_len = 0 -entries = [] -for name in sorted( name_loc_dict.iterkeys() ): - loc = name_loc_dict[ name ] - entry = '%s\t%s' % ( name, '%s:%i-%i' % ( loc[ 'contig' ], loc[ 'start' ], loc[ 'end' ] ) ) - if len( entry ) > max_len: - max_len = len( entry ) - entries.append( entry ) - -out.write( str( max_len + 1 ).ljust( max_len ) + '\n' ) -for entry in entries: - out.write( entry.ljust( max_len ) + '\n' ) -out.close() \ No newline at end of file +if __name__ == '__main__': + main() \ No newline at end of file Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: jgoecks: Make 'add dataset to trackster' dialog compatiable with new modal behavior.
by Bitbucket 20 Aug '12

20 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/0b58ac6510c5/ changeset: 0b58ac6510c5 user: jgoecks date: 2012-08-20 16:27:44 summary: Make 'add dataset to trackster' dialog compatiable with new modal behavior. affected #: 1 file diff -r 47188cc45d188e433f3e109710c3cfb1b8e23697 -r 0b58ac6510c5df73ffb1634f874c5283e3d2d068 templates/root/history.mako --- a/templates/root/history.mako +++ b/templates/root/history.mako @@ -250,7 +250,6 @@ }, "View in saved visualization": function() { // Show new modal with saved visualizations. - parent.hide_modal(); parent.show_modal("Add Data to Saved Visualization", table_html, { "Cancel": function() { parent.hide_modal(); Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: jgoecks: Fix URL generation bug when dictifying tools.
by Bitbucket 20 Aug '12

20 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/47188cc45d18/ changeset: 47188cc45d18 user: jgoecks date: 2012-08-20 15:57:25 summary: Fix URL generation bug when dictifying tools. affected #: 1 file diff -r ddabb9a875cb27d172d499d979a329e0f682164e -r 47188cc45d188e433f3e109710c3cfb1b8e23697 lib/galaxy/tools/__init__.py --- a/lib/galaxy/tools/__init__.py +++ b/lib/galaxy/tools/__init__.py @@ -2631,7 +2631,7 @@ if for_link: # Create tool link. if not self.tool_type.startswith( 'data_source' ): - link = url_for( controller='tool_runner', tool_id=self.id ) + link = url_for( '/tool_runner', tool_id=self.id ) else: link = url_for( self.action, **self.get_static_param_values( trans ) ) Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: jgoecks: Trackster: for explicit coverage histogram mode in Feature Tracks, use coverage indices rather than computing on client side.
by Bitbucket 19 Aug '12

19 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/ddabb9a875cb/ changeset: ddabb9a875cb user: jgoecks date: 2012-08-19 21:42:11 summary: Trackster: for explicit coverage histogram mode in Feature Tracks, use coverage indices rather than computing on client side. affected #: 2 files diff -r 2d937ad3e1b47492f64fa0b9c668529a735118e8 -r ddabb9a875cb27d172d499d979a329e0f682164e lib/galaxy/web/controllers/tracks.py --- a/lib/galaxy/web/controllers/tracks.py +++ b/lib/galaxy/web/controllers/tracks.py @@ -387,7 +387,21 @@ return return_message extra_info = None - if 'index' in data_sources and data_sources['index']['name'] == "summary_tree" and kwargs.get("mode", "Auto") == "Auto": + mode = kwargs.get( "mode", "Auto" ) + # Handle histogram mode uniquely for now: + if mode == "Coverage": + # Get summary using minimal cutoffs. + tracks_dataset_type = data_sources['index']['name'] + converted_dataset = dataset.get_converted_dataset( trans, tracks_dataset_type ) + indexer = get_data_provider( tracks_dataset_type )( converted_dataset, dataset ) + summary = indexer.get_data( chrom, low, high, resolution=kwargs[ 'resolution' ], detail_cutoff=0, draw_cutoff=0 ) + if summary == "detail": + # Use maximum level of detail--2--to get summary data no matter the resolution. + summary = indexer.get_data( chrom, low, high, resolution=kwargs[ 'resolution' ], level=2, detail_cutoff=0, draw_cutoff=0 ) + frequencies, max_v, avg_v, delta = summary + return { 'dataset_type': tracks_dataset_type, 'data': frequencies, 'max': max_v, 'avg': avg_v, 'delta': delta } + + if 'index' in data_sources and data_sources['index']['name'] == "summary_tree" and mode == "Auto": # Only check for summary_tree if it's Auto mode (which is the default) # # Have to choose between indexer and data provider diff -r 2d937ad3e1b47492f64fa0b9c668529a735118e8 -r ddabb9a875cb27d172d499d979a329e0f682164e static/scripts/viz/trackster.js --- a/static/scripts/viz/trackster.js +++ b/static/scripts/viz/trackster.js @@ -4433,7 +4433,7 @@ // initialization code. // var track = this; - this.display_modes = ["Auto", "Histogram", "Dense", "Squish", "Pack"]; + this.display_modes = ["Auto", "Coverage", "Dense", "Squish", "Pack"]; // // Initialization. @@ -4516,8 +4516,8 @@ var track = this, i; - // If mode is Histogram and tiles do not share max, redraw tiles as necessary using new max. - if (track.mode === "Histogram") { + // If mode is Coverage and tiles do not share max, redraw tiles as necessary using new max. + if (track.mode === "Coverage") { // Get global max. var global_max = -1; for (i = 0; i < tiles.length; i++) { @@ -4534,7 +4534,7 @@ track.draw_helper(true, width, tile.index, tile.resolution, tile.html_elt.parent(), w_scale, { more_tile_data: { max: global_max } } ); } } - } + } // // Update filter attributes, UI. @@ -4650,86 +4650,6 @@ return slotter.slot_features( features ); }, /** - * Given feature data, returns summary tree data. Feature data must be sorted by start - * position. Return value is a dict with keys 'data', 'delta' (bin size) and 'max.' Data - * is a two-item list; first item is bin start, second is bin's count. - */ - get_summary_tree_data: function(data, low, high, num_bins) { - if (num_bins > high - low) { - num_bins = high - low; - } - var bin_size = Math.floor((high - low)/num_bins), - bins = [], - max_count = 0; - - /* - // For debugging: - for (var i = 0; i < data.length; i++) - console.log("\t", data[i][1], data[i][2], data[i][3]); - */ - - // - // Loop through bins, counting data for each interval. - // - var data_index_start = 0, - data_index = 0, - data_interval, - bin_index = 0, - bin_interval = [], - cur_bin; - - // Set bin interval. - var set_bin_interval = function(interval, low, bin_index, bin_size) { - interval[0] = low + bin_index * bin_size; - interval[1] = low + (bin_index + 1) * bin_size; - }; - - // Loop through bins, data to compute bin counts. Only compute bin counts as long - // as there is data. - while (bin_index < num_bins && data_index_start !== data.length) { - // Find next bin that has data. - var bin_has_data = false; - for (; bin_index < num_bins && !bin_has_data; bin_index++) { - set_bin_interval(bin_interval, low, bin_index, bin_size); - // Loop through data and break if data found that goes in bin. - for (data_index = data_index_start; data_index < data.length; data_index++) { - data_interval = data[data_index].slice(1, 3); - if (is_overlap(data_interval, bin_interval)) { - bin_has_data = true; - break; - } - } - // Break from bin loop if this bin has data. - if (bin_has_data) { - break; - } - } - - // Set start index to current data, which is the first to overlap with this bin - // and perhaps with later bins. - data_start_index = data_index; - - // Count intervals that overlap with bin. - bins[bins.length] = cur_bin = [bin_interval[0], 0]; - for (; data_index < data.length; data_index++) { - data_interval = data[data_index].slice(1, 3); - if (is_overlap(data_interval, bin_interval)) { - cur_bin[1]++; - } - else { break; } - } - - // Update max count. - if (cur_bin[1] > max_count) { - max_count = cur_bin[1]; - } - - // Go to next bin. - bin_index++; - } - return {max: max_count, delta: bin_size, data: bins}; - }, - /** * Returns appropriate display mode based on data. */ get_mode: function(data) { @@ -4766,8 +4686,7 @@ * number of pixels required. */ get_canvas_height: function(result, mode, w_scale, canvas_width) { - if (mode === "summary_tree" || mode === "Histogram") { - // Extra padding at top of summary tree so label does not overlap data. + if (mode === "summary_tree" || mode === "Coverage") { return this.summary_draw_height; } else { @@ -4796,16 +4715,8 @@ tile_high = region.get('end'), left_offset = this.left_offset; - // Drawing the summary tree (feature coverage histogram) - if (mode === "summary_tree" || mode === "Histogram") { - // Get summary tree data if necessary and set max if there is one. - if (result.dataset_type !== "summary_tree") { - var st_data = this.get_summary_tree_data(result.data, tile_low, tile_high, 200); - if (result.max) { - st_data.max = result.max; - } - result = st_data; - } + // Drawing the summary tree. + if (mode === "summary_tree" || mode === "Coverage") { // Paint summary tree into canvas var painter = new painters.SummaryTreePainter(result, tile_low, tile_high, this.prefs); painter.draw(ctx, canvas.width, canvas.height, w_scale); @@ -4872,7 +4783,11 @@ if (mode === "Auto") { return true; } - // All other modes--Histogram, Dense, Squish, Pack--require data + details. + // Histogram mode requires summary_tree data. + else if (mode === "Coverage") { + return data.dataset_type === "summary_tree"; + } + // All other modes--Dense, Squish, Pack--require data + details. else if (data.extra_info === "no_detail" || data.dataset_type === "summary_tree") { return false; } Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. 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commit/galaxy-central: jgoecks: Streamline creation of stats for BBI tracks data provider.
by Bitbucket 18 Aug '12

18 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/2d937ad3e1b4/ changeset: 2d937ad3e1b4 user: jgoecks date: 2012-08-19 00:00:31 summary: Streamline creation of stats for BBI tracks data provider. affected #: 1 file diff -r d62d3c23a61377f3d7928b56e7af346d502aac73 -r 2d937ad3e1b47492f64fa0b9c668529a735118e8 lib/galaxy/visualization/tracks/data_providers.py --- a/lib/galaxy/visualization/tracks/data_providers.py +++ b/lib/galaxy/visualization/tracks/data_providers.py @@ -968,29 +968,32 @@ # which we use converted_dataset f, bbi = self._get_dataset() - # If the stats kwarg was provide, we compute overall summary data for the - # range defined by start and end but no reduced data. This is currently - # used by client to determine the default range. + # If stats requested, compute overall summary data for the range + # start:endbut no reduced data. This is currently used by client + # to determine the default range. if 'stats' in kwargs: summary = bbi.summarize( chrom, start, end, 1 ) f.close() - if summary is None: - return None - else: + + min = 0 + max = 0 + mean = 0 + sd = 0 + if summary is not None: # Does the summary contain any defined values? valid_count = summary.valid_count[0] - if summary.valid_count < 1: - return None + if summary.valid_count > 0: + # Compute $\mu \pm 2\sigma$ to provide an estimate for upper and lower + # bounds that contain ~95% of the data. + mean = summary.sum_data[0] / valid_count + var = summary.sum_squares[0] - mean + if valid_count > 1: + var /= valid_count - 1 + sd = numpy.sqrt( var ) + min = summary.min_val[0] + max = summary.max_val[0] - # Compute $\mu \pm 2\sigma$ to provide an estimate for upper and lower - # bounds that contain ~95% of the data. - mean = summary.sum_data[0] / valid_count - var = summary.sum_squares[0] - mean - if valid_count > 1: - var /= valid_count - 1 - sd = numpy.sqrt( var ) - - return dict( data=dict( min=summary.min_val[0], max=summary.max_val[0], mean=mean, sd=sd ) ) + return dict( data=dict( min=min, max=max, mean=mean, sd=sd ) ) # Sample from region using approximately this many samples. N = 1000 Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: jgoecks: Converters enhancements: (a) ignore track lines in wiggle to bigwig converter and add clip option and (b) enable visualization of bedgraph datasets via a bedgraph to bigwig converter.
by Bitbucket 17 Aug '12

17 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/d62d3c23a613/ changeset: d62d3c23a613 user: jgoecks date: 2012-08-17 23:49:41 summary: Converters enhancements: (a) ignore track lines in wiggle to bigwig converter and add clip option and (b) enable visualization of bedgraph datasets via a bedgraph to bigwig converter. affected #: 3 files diff -r e9587d2d241eeca42dae6280388152a0f062e71a -r d62d3c23a61377f3d7928b56e7af346d502aac73 lib/galaxy/datatypes/converters/bedgraph_to_bigwig_converter.xml --- /dev/null +++ b/lib/galaxy/datatypes/converters/bedgraph_to_bigwig_converter.xml @@ -0,0 +1,14 @@ +<tool id="CONVERTER_bedgraph_to_bigwig" name="Convert BedGraph to BigWig" hidden="true"> +  + <command>grep -v "^track" $input | wigToBigWig -clip stdin $chromInfo $output</command> + <inputs> + <page> + <param format="bedgraph" name="input" type="data" label="Choose wiggle"/> + </page> + </inputs> + <outputs> + <data format="bigwig" name="output"/> + </outputs> + <help> + </help> +</tool> \ No newline at end of file diff -r e9587d2d241eeca42dae6280388152a0f062e71a -r d62d3c23a61377f3d7928b56e7af346d502aac73 lib/galaxy/datatypes/converters/wig_to_bigwig_converter.xml --- a/lib/galaxy/datatypes/converters/wig_to_bigwig_converter.xml +++ b/lib/galaxy/datatypes/converters/wig_to_bigwig_converter.xml @@ -1,6 +1,6 @@ <tool id="CONVERTER_wig_to_bigwig" name="Convert Wiggle to BigWig" hidden="true"> - <command>wigToBigWig $input $chromInfo $output</command> + <command>grep -v "^track" $input | wigToBigWig -clip stdin $chromInfo $output</command><inputs><page><param format="wig" name="input" type="data" label="Choose wiggle"/> diff -r e9587d2d241eeca42dae6280388152a0f062e71a -r d62d3c23a61377f3d7928b56e7af346d502aac73 lib/galaxy/datatypes/interval.py --- a/lib/galaxy/datatypes/interval.py +++ b/lib/galaxy/datatypes/interval.py @@ -338,7 +338,7 @@ file_ext = "bedgraph" def get_track_type( self ): - return "LineTrack", {"data": "array_tree"} + return "LineTrack", { "data": "bigwig", "index": "bigwig" } def as_ucsc_display_file( self, dataset, **kwd ): """ @@ -1141,8 +1141,9 @@ resolution = min( resolution, 100000 ) resolution = max( resolution, 1 ) return resolution + def get_track_type( self ): - return "LineTrack", {"data": "bigwig", "index": "bigwig"} + return "LineTrack", { "data": "bigwig", "index": "bigwig" } class CustomTrack ( Tabular ): """UCSC CustomTrack""" Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: smcmanus: Minor tweak to exit code handling
by Bitbucket 17 Aug '12

17 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/e9587d2d241e/ changeset: e9587d2d241e user: smcmanus date: 2012-08-17 21:15:48 summary: Minor tweak to exit code handling affected #: 1 file diff -r 869163ea42946aa5c394d79a3366898cf59beeeb -r e9587d2d241eeca42dae6280388152a0f062e71a lib/galaxy/jobs/__init__.py --- a/lib/galaxy/jobs/__init__.py +++ b/lib/galaxy/jobs/__init__.py @@ -490,7 +490,6 @@ if stderr contains anything, then False is returned. Note that the job id is just for messages. """ - err_msg = "" # By default, the tool succeeded. This covers the case where the code # has a bug but the tool was ok, and it lets a workflow continue. success = True @@ -507,7 +506,7 @@ # Check the exit code ranges in the order in which # they were specified. Each exit_code is a StdioExitCode # that includes an applicable range. If the exit code was in - # that range, then apply the error level and add in a message. + # that range, then apply the error level and add a message. # If we've reached a fatal error rule, then stop. max_error_level = galaxy.tools.StdioErrorLevel.NO_ERROR for stdio_exit_code in self.tool.stdio_exit_codes: @@ -515,20 +514,16 @@ tool_exit_code <= stdio_exit_code.range_end ): # Tack on a generic description of the code # plus a specific code description. For example, - # this might append "Job 42: Warning: Out of Memory\n". - # TODO: Find somewhere to stick the err_msg - - # possibly to the source (stderr/stdout), possibly - # in a new db column. + # this might prepend "Job 42: Warning: Out of Memory\n". code_desc = stdio_exit_code.desc if ( None == code_desc ): code_desc = "" - tool_msg = ( "Job %s: %s: Exit code %d: %s" % ( - job.get_id_tag(), - galaxy.tools.StdioErrorLevel.desc( tool_exit_code ), + tool_msg = ( "%s: Exit code %d: %s" % ( + galaxy.tools.StdioErrorLevel.desc( stdio_exit_code.error_level ), tool_exit_code, code_desc ) ) - log.info( tool_msg ) - stderr = err_msg + stderr + log.info( "Job %s: %s" % (job.get_id_tag(), tool_msg) ) + stderr = tool_msg + "\n" + stderr max_error_level = max( max_error_level, stdio_exit_code.error_level ) if ( max_error_level >= @@ -571,7 +566,6 @@ re.IGNORECASE ) if ( regex_match ): rexmsg = self.regex_err_msg( regex_match, regex) - # DELETEME log.info( "Job %s: %s" % ( job.get_id_tag(), rexmsg ) ) stderr = rexmsg + "\n" + stderr Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: carlfeberhard: new data for bwa_wrapper/bwa_color_wrapper functional tests
by Bitbucket 17 Aug '12

17 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/869163ea4294/ changeset: 869163ea4294 user: carlfeberhard date: 2012-08-17 20:39:32 summary: new data for bwa_wrapper/bwa_color_wrapper functional tests affected #: 3 files diff -r 3840c86e34b77bbd0d7c2da0c4ff3e5004dc0fe4 -r 869163ea42946aa5c394d79a3366898cf59beeeb test-data/bwa_wrapper_out3.sam --- a/test-data/bwa_wrapper_out3.sam +++ b/test-data/bwa_wrapper_out3.sam @@ -1,63 +1,63 @@ +@SQ SN:phiX174 LN:5386 +@RG ID:abcdefg LB:lib-mom-A PL:ILLUMINA SM:mom DS:descrip DT:2010-11-01 PI:400 @PG ID:bwa PN:bwa VN:0.5.9-r16 -@RG ID:abcdefg DS:descrip DT:2010-11-01 LB:lib-mom-A PI:400 PL:ILLUMINA SM:mom -@SQ SN:phiX174 LN:5386 -seq1 113 phiX174 340 37 18M = 322 -18 GGATTACTATCTGAGTCC II9(.+5$IIIIIII#II RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq1 177 phiX174 322 25 18M = 340 18 GATATTTTAAAGGAGCGT B&&I13A$G$*%$IIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:2C8A6 -seq10 129 phiX174 4168 37 18M = 4149 -19 AGGGCGTTGAGTTCGATA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq10 65 phiX174 4149 25 18M = 4168 19 ATTCTTTCTTTTCGTATC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:5G11G0 -seq11 129 phiX174 4091 37 18M = 4072 -19 ATCCCCAATGCTTGGCTT IIIII$%*$G$A31I&&B RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq11 65 phiX174 4072 37 18M = 4091 19 GCATTTCTACTCCTTCTC II#IIIIIII$5+.(9II RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:12T5 -seq12 129 phiX174 5365 25 18M = 5349 -16 GGATTGGCGTTTCCAACC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:0T9A7 -seq12 65 phiX174 5349 37 18M = 5365 16 CGCGCTTCGATAAAAATG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq13 129 phiX174 4093 25 18M = 4074 -19 CCCCAATCCTTGCCTTCC IIIAAIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:7G4G5 -seq13 65 phiX174 4074 37 18M = 4093 19 ATTTCTACTCTTTCTCAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:17A0 -seq14 129 phiX174 4016 37 3M1D15M = 3998 -18 TGATATTTTGACTTTGAG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:1 XG:i:1 MD:Z:3^T15 -seq14 65 phiX174 3998 37 18M = 4016 18 CCCTTTTGAATGTCACGC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:5C12 -seq15 129 phiX174 5216 37 5M2I11M = 5198 -18 TTACGAAACGCGACGCCG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:1 XG:i:2 MD:Z:16 -seq15 65 phiX174 5198 37 18M = 5216 18 CCAACTTACCAAGGTGGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:13C4 -seq16 129 phiX174 2897 37 18M = 2880 -17 TTATTTTTCTCCAGCCAC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:6G11 -seq16 65 phiX174 2880 37 10M1I7M = 2897 17 TCAGGGTATTAAAAGAGA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:1 XG:i:1 MD:Z:5T11 -seq17 129 phiX174 3053 25 18M = 3034 -19 AAACAATACTTTAGGCAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:0T9G7 -seq17 65 phiX174 3034 37 18M = 3053 19 GTGATGTGCTTGCTACCG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq1 113 phiX174 340 37 18M = 322 -18 GGATTACTATCTGAGTCC II9(.+5$IIIIIII#II RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq1 177 phiX174 322 25 18M = 340 18 GATATTTTAAAGGAGCGT B&&I13A$G$*%$IIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:2C8A6 +seq2 65 phiX174 141 37 18M = 159 18 ATTCGACCTATCCTTGCG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq2 129 phiX174 159 37 18M = 141 -18 CAGCTCGAGAAGCTCTTA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq3 65 phiX174 505 37 18M = 523 18 GTAACAAAGTTTGGATTG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq3 129 phiX174 523 37 18M = 505 -18 CTACTGACCGCTCTCGTG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq4 69 phiX174 945 0 * = 945 0 AGCCGCTCGTCTTTTATG IIIIIIIIIIIIIIIIII RG:Z:abcdefg +seq4 137 phiX174 945 23 18M = 945 0 TAGGTGGTCAACCATTTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:12A5 XA:Z:phiX174,+945,17M1S,2; +seq5 65 phiX174 4985 37 18M = 5003 18 CAGTTATATGGCTTTTGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:13G4 +seq5 129 phiX174 5003 37 18M = 4985 -18 TTTCTATGTGGCTTAATA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:13A4 +seq6 65 phiX174 925 37 11M1D7M = 944 19 AGGCGCTCGTCTTGGTAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:1 XG:i:1 MD:Z:11^T7 +seq6 129 phiX174 944 37 18M = 925 -19 GTAGGTGGTCAACAATTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq7 65 phiX174 943 25 18M = 960 17 TGTAGGTGGTCAACCAAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:14A1T1 XA:Z:phiX174,+943,13M1I4M,2; +seq7 129 phiX174 960 37 18M = 943 -17 TTTAATTGCAGGGGCTTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq8 69 phiX174 1715 0 * = 1715 0 ACACCCGTCCTTTACGTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg +seq8 137 phiX174 1715 37 18M = 1715 0 ATGCGCTCTATTCTCTGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:10A7 +seq9 65 phiX174 2596 37 18M = 2613 17 GCCGCTATTCAGGTTGTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:7A10 +seq9 129 phiX174 2613 37 18M = 2596 -17 TTCTGTTGGTGCTGATAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq10 65 phiX174 4149 25 18M = 4168 19 ATTCTTTCTTTTCGTATC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:5G11G0 +seq10 129 phiX174 4168 37 18M = 4149 -19 AGGGCGTTGAGTTCGATA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq11 65 phiX174 4072 37 18M = 4091 19 GCATTTCTACTCCTTCTC II#IIIIIII$5+.(9II RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:12T5 +seq11 129 phiX174 4091 37 18M = 4072 -19 ATCCCCAATGCTTGGCTT IIIII$%*$G$A31I&&B RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq12 65 phiX174 5349 37 18M = 5365 16 CGCGCTTCGATAAAAATG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq12 129 phiX174 5365 25 18M = 5349 -16 GGATTGGCGTTTCCAACC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:0T9A7 +seq13 65 phiX174 4074 37 18M = 4093 19 ATTTCTACTCTTTCTCAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:17A0 +seq13 129 phiX174 4093 25 18M = 4074 -19 CCCCAATCCTTGCCTTCC IIIAAIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:7G4G5 +seq14 65 phiX174 3998 37 18M = 4016 18 CCCTTTTGAATGTCACGC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:5C12 +seq14 129 phiX174 4016 37 3M1D15M = 3998 -18 TGATATTTTGACTTTGAG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:1 XG:i:1 MD:Z:3^T15 +seq15 65 phiX174 5198 37 18M = 5216 18 CCAACTTACCAAGGTGGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:13C4 +seq15 129 phiX174 5216 37 5M2I11M = 5198 -18 TTACGAAACGCGACGCCG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:1 XG:i:2 MD:Z:16 +seq16 65 phiX174 2880 37 10M1I7M = 2897 17 TCAGGGTATTAAAAGAGA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:5T11 +seq16 129 phiX174 2897 37 18M = 2880 -17 TTATTTTTCTCCAGCCAC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6G11 +seq17 65 phiX174 3034 37 18M = 3053 19 GTGATGTGCTTGCTACCG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq17 129 phiX174 3053 25 18M = 3034 -19 AAACAATACTTTAGGCAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:0T9G7 +seq18 73 phiX174 4088 37 18M = 4088 0 TCAATCCCCCATGCTTGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:9A8 seq18 133 phiX174 4088 0 * = 4088 0 CCGTTCCATAAGCAGATG IIIIIIIIIIIIIIIIII RG:Z:abcdefg -seq18 73 phiX174 4088 37 18M = 4088 0 TCAATCCCCCATGCTTGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:9A8 -seq19 129 phiX174 3324 37 18M = 3304 -20 GAGCGTCCTGGTGCTGAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:6G11 -seq19 65 phiX174 3304 37 18M = 3324 20 TTCCTGCGCTTAATGCTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:6A11 -seq2 129 phiX174 159 37 18M = 141 -18 CAGCTCGAGAAGCTCTTA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq2 65 phiX174 141 37 18M = 159 18 ATTCGACCTATCCTTGCG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq20 129 phiX174 1100 37 18M = 1082 -18 ACTCCGGTTATCGCTGGC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq20 65 phiX174 1082 37 18M = 1100 18 CTTATTACCATTTCAACT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq21 129 phiX174 1363 37 18M = 1344 -19 TAAGCATTTGGTTCAGGG IIIII$%*$G$A31I&&B RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:10T7 -seq21 65 phiX174 1344 37 18M = 1363 19 CTGATACCAATAAAACCC II#IIIIIII$5+.(9II RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:15T2 -seq22 137 phiX174 5215 37 18M = 5215 0 GTTACGACGCGACGCCGT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq19 65 phiX174 3304 37 18M = 3324 20 TTCCTGCGCTTAATGCTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6A11 +seq19 129 phiX174 3324 37 18M = 3304 -20 GAGCGTCCTGGTGCTGAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6G11 +seq20 65 phiX174 1082 37 18M = 1100 18 CTTATTACCATTTCAACT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq20 129 phiX174 1100 37 18M = 1082 -18 ACTCCGGTTATCGCTGGC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq21 65 phiX174 1344 23 18M = 1363 19 CTGATACCAATAAAACCC II#IIIIIII$5+.(9II RG:Z:abcdefg XT:A:U NM:i:1 SM:i:23 AM:i:23 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:15T2 XA:Z:phiX174,+1344,15M1D3M,2; +seq21 129 phiX174 1363 37 18M = 1344 -19 TAAGCATTTGGTTCAGGG IIIII$%*$G$A31I&&B RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:10T7 seq22 69 phiX174 5215 0 * = 5215 0 AATCAAACTTACCAAGGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg -seq23 129 phiX174 4308 25 18M = 4289 -19 TTTAATAACCCTATAGAC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:0A8A8 -seq23 65 phiX174 4289 37 18M = 4308 19 TGTGCTTCCCCAACTTGA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:6C11 -seq24 129 phiX174 4101 37 18M = 4084 -17 CTTGGCTTCCCTAAGCAG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:10A7 -seq24 65 phiX174 4084 37 18M = 4101 17 TTTCTCAATCCCCAATGC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq25 129 phiX174 537 37 18M = 520 -17 CGTGCTCGTTGCTGCGTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:9C8 -seq25 65 phiX174 520 37 18M = 537 17 TTGCTACTGACCGCTCTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:17C0 -seq26 129 phiX174 1994 37 18M = 1976 -18 AAGGATGTTTTCCGTTCT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq26 65 phiX174 1976 37 18M = 1994 18 CCGCGTGAAATTTCTATG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq27 129 phiX174 2614 37 3M1D15M = 2598 -16 TGTTTGGTGCTGATATTG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:1 XG:i:1 MD:Z:1C1^G15 -seq27 65 phiX174 2598 37 18M = 2614 16 CGCTAATCAAGTTGTTTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:9G8 -seq28 129 phiX174 2906 37 18M = 2890 -16 TCCAGCCACTAAAGTGAG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:10T7 -seq28 65 phiX174 2890 25 18M = 2906 16 AAAGAGATTATTTGTCGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:16T0C0 +seq22 137 phiX174 5215 37 18M = 5215 0 GTTACGACGCGACGCCGT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq23 65 phiX174 4289 37 18M = 4308 19 TGTGCTTCCCCAACTTGA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6C11 +seq23 129 phiX174 4308 25 18M = 4289 -19 TTTAATAACCCTATAGAC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:0A8A8 +seq24 65 phiX174 4084 37 18M = 4101 17 TTTCTCAATCCCCAATGC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq24 129 phiX174 4101 37 18M = 4084 -17 CTTGGCTTCCCTAAGCAG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:10A7 +seq25 65 phiX174 520 37 18M = 537 17 TTGCTACTGACCGCTCTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:17C0 +seq25 129 phiX174 537 37 18M = 520 -17 CGTGCTCGTTGCTGCGTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:9C8 +seq26 65 phiX174 1976 37 18M = 1994 18 CCGCGTGAAATTTCTATG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq26 129 phiX174 1994 37 18M = 1976 -18 AAGGATGTTTTCCGTTCT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq27 65 phiX174 2598 37 18M = 2614 16 CGCTAATCAAGTTGTTTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:9G8 +seq27 129 phiX174 2614 37 3M1D15M = 2598 -16 TGTTTGGTGCTGATATTG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:1 XG:i:1 MD:Z:1C1^G15 +seq28 65 phiX174 2890 25 18M = 2906 16 AAAGAGATTATTTGTCGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:16T0C0 +seq28 129 phiX174 2906 37 18M = 2890 -16 TCCAGCCACTAAAGTGAG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:10T7 +seq29 73 phiX174 5339 37 18M = 5339 0 CAAATTAATGCGCGCTTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6T11 seq29 133 phiX174 5339 0 * = 5339 0 GATAATGATTGGGGTATC IIIIIIIIIIIIIIIIII RG:Z:abcdefg -seq29 73 phiX174 5339 37 18M = 5339 0 CAAATTAATGCGCGCTTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:6T11 -seq3 129 phiX174 523 37 18M = 505 -18 CTACTGACCGCTCTCGTG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq3 65 phiX174 505 37 18M = 523 18 GTAACAAAGTTTGGATTG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq30 129 phiX174 4108 37 18M = 4091 -17 ACCATAAGCAGATGGATA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:0T17 -seq30 65 phiX174 4091 37 18M = 4108 17 ATCCCCTATGCTTGGCTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:6A11 -seq4 137 phiX174 945 37 18M = 945 0 TAGGTGGTCAACCATTTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:12A5 -seq4 69 phiX174 945 0 * = 945 0 AGCCGCTCGTCTTTTATG IIIIIIIIIIIIIIIIII RG:Z:abcdefg -seq5 129 phiX174 5003 37 18M = 4985 -18 TTTCTATGTGGCTTAATA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:13A4 -seq5 65 phiX174 4985 37 18M = 5003 18 CAGTTATATGGCTTTTGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:13G4 -seq6 129 phiX174 944 37 18M = 925 -19 GTAGGTGGTCAACAATTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq6 65 phiX174 925 37 11M1D7M = 944 19 AGGCGCTCGTCTTGGTAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:1 XG:i:1 MD:Z:11^T7 -seq7 129 phiX174 960 37 18M = 943 -17 TTTAATTGCAGGGGCTTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq7 65 phiX174 943 25 18M = 960 17 TGTAGGTGGTCAACCAAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:14A1T1 -seq8 137 phiX174 1715 37 18M = 1715 0 ATGCGCTCTATTCTCTGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:10A7 -seq8 69 phiX174 1715 0 * = 1715 0 ACACCCGTCCTTTACGTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg -seq9 129 phiX174 2613 37 18M = 2596 -17 TTCTGTTGGTGCTGATAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq9 65 phiX174 2596 37 18M = 2613 17 GCCGCTATTCAGGTTGTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:7A10 +seq30 65 phiX174 4091 37 18M = 4108 17 ATCCCCTATGCTTGGCTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6A11 +seq30 129 phiX174 4108 37 18M = 4091 -17 ACCATAAGCAGATGGATA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:0T17 diff -r 3840c86e34b77bbd0d7c2da0c4ff3e5004dc0fe4 -r 869163ea42946aa5c394d79a3366898cf59beeeb test-data/bwa_wrapper_out6.sam --- a/test-data/bwa_wrapper_out6.sam +++ b/test-data/bwa_wrapper_out6.sam @@ -1,49 +1,46 @@ -427_1253_1057_F3 0 chrX_part 14947 37 49M * 0 0 TTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTTTTCATGTGTCT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]VZ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 -427_1299_965_F3 16 chrX_part 13217 25 49M * 0 0 GGGATGCTCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAGTTCTG ][]]]]Y]]]]Z]]]]]]]]]Z]]]]Y]]]]]]]]Y]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:7C41 -427_12_1018_F3 4 * 0 0 * * 0 0 CTCTTCTCCTCCGGACTAGAGGCCCGGGCAATCAAGGCTGCGTAGACGTA >?<;5@:>>5>7:?<7@><=:>?92<?5>=;@@>?2<?>:?<9<4>56?@ RG:Z:474747 +@SQ SN:chrX_part LN:37500 +@RG ID:474747 LB:lib-child-1-A PL:SOLID SM:child-1 DS:description DT:2011-03-14 PI:200 +@PG ID:bwa PN:bwa VN:0.5.9-r16 427_12_390_F3 4 * 0 0 * * 0 0 AAGGGAGTGGTGCTGGTGGGAGGCAATTTGTCGGACCTGGGAAGCGAGTC BBB>=;@@A6<A;=>=A?>??@A58@B>9>>@?70?@<=>>@A9/5?=25 RG:Z:474747 427_12_550_F3 4 * 0 0 * * 0 0 CGATCTCTGCAACTTCGTGCGCAGGCGATGGGGGGGAAAATGAACGGATA 8A=?<BA@=;?A;?><B?;:5@.<:7?9;6<A62<@;8<==@3:>;=339 RG:Z:474747 427_12_941_F3 4 * 0 0 * * 0 0 GGGCCAAAGTAAACGCTAATCGAGGAGGACAAAGTAAGGAAGGCGCCTGT B@72=>?A:;<:?>?94B??;3A<?1@<3=<A?8>A6?>=>7A/>=07<@ RG:Z:474747 +427_12_1018_F3 4 * 0 0 * * 0 0 CTCTTCTCCTCCGGACTAGAGGCCCGGGCAATCAAGGCTGCGTAGACGTA >?<;5@:>>5>7:?<7@><=:>?92<?5>=;@@>?2<?>:?<9<4>56?@ RG:Z:474747 427_13_422_F3 4 * 0 0 * * 0 0 AATAACGAAGCGTGTGTGTTAGCGGGAGAGCCGGGCCCCTTCCCGTACGT 9>A2,9@9<8<=;;7=7:>@1<:?37<1>1690>7=<:=A/>53.::<=/ RG:Z:474747 427_13_494_F3 4 * 0 0 * * 0 0 CGACTACCCCTACCGGTCACCGCTACGGTGAGGCTAAGCTCTTCCAGACG .>>?@;A@?7?@<>39?>=7:==76;=;=65@:::9?8?3=@8=::@2<. RG:Z:474747 427_13_606_F3 4 * 0 0 * * 0 0 TTTAACGCGATAATCCTTCGAAGGAAAAGAAGTGACTTTCCGTACATACC BB?A?@A??>B@A@<=@A==A>>>>AA@7<?:B=9<@A@A@2@>8><;<= RG:Z:474747 427_13_861_F3 4 * 0 0 * * 0 0 CGAGGTGCAGGCCTGCTCTGGGGACCCACTGTGACCAGGCGGCCTGCCAC =>>@<@>BB>>58A=@A<BABA:=>@B:==?A9<AA@7::@;??:A?;2> RG:Z:474747 427_13_961_F3 4 * 0 0 * * 0 0 GACGGGAGACGCTGCGATCGCACCTTAATGGGGGACCGGATGCACAAAAG @BBBBB@BB@B>BBAB@B@AB@ABAABBA?B?B@>@@BA=A?A:<>BBB3 RG:Z:474747 -427_1444_687_F3 16 chrX_part 25682 37 49M * 0 0 TCATTCTCAGCAAACTATCGCAAGGACAAAAAACCAAACACCGCATGTT ]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -427_14_1010_F3 4 * 0 0 * * 0 0 GCTGCTGTGGCCGGGCGCACCCAGACAGGTAGAAAGCCGACTCACCACGT @??A><@=ABA@?A?A@A??AB@AA@=<?B;<@?A<94?A=5;:@@2?@9 RG:Z:474747 427_14_270_F3 4 * 0 0 * * 0 0 GCAGATGCGTGGAGCAACGGTGGTCTGTAGATCGTCAGGATCTGAAACCA A=A@?BB>@9@BAA89>A@:A@@>2@A;383B><;:;>=1=8B:<>=?8= RG:Z:474747 427_14_376_F3 4 * 0 0 * * 0 0 TCACACGCAGGGCCCCGTACGGAGAATACTGCTCAATGAAAATGGAGGGG B9??@BA@;?BB@@>AA?:?>A><=<A:4=5<?;=<?;?:95=61;<:<2 RG:Z:474747 427_14_602_F3 4 * 0 0 * * 0 0 GGCCGGTTGGTCGACTAGGCAGGCCGACAATGCCTGAACATACTAGGGCC ,B=7==A:9;AA45,=:9/.2<;58>9806:=>:<8=877?=9198>:2: RG:Z:474747 427_14_665_F3 4 * 0 0 * * 0 0 CATACGAGGGAGTCTCTAGCATAAAGCTGGGTCCCCTGACATTGACCTGA <A@@>B7<A5@>@>>>;<@68,9@;<-<<:>9?@?>6.A65=;=8569;5 RG:Z:474747 -427_1522_8_F3 0 chrX_part 12254 0 49M * 0 0 ACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCAC )]]]]]]]]]]]]]PU]]][]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 XM:i:3 XO:i:0 XG:i:0 MD:Z:34C14 XA:Z:chrX_part,+26921,49M,3; +427_14_1010_F3 4 * 0 0 * * 0 0 GCTGCTGTGGCCGGGCGCACCCAGACAGGTAGAAAGCCGACTCACCACGT @??A><@=ABA@?A?A@A??AB@AA@=<?B;<@?A<94?A=5;:@@2?@9 RG:Z:474747 +427_15_423_F3 4 * 0 0 * * 0 0 GCTGGAGGAGAAAGGGGGGACCCGCAATCGAGCGTCCGATAATGAAATGG >/B@=<A=??@B>A>B@@>9?@=A6@B@9?5@6A7A@>@A?=?A/@@A?= RG:Z:474747 +427_15_646_F3 4 * 0 0 * * 0 0 CAGTTCGCTTGGTCAATCAATATAGAGAACCTGGGGAGTAGTGTCCGGAG ?@=?>=A?@??B876:@65.B<914;;<06=?914:67997;5<:/7771 RG:Z:474747 +427_15_872_F3 4 * 0 0 * * 0 0 CGGGTAGACTTTAGTACCTAGACGAAGGGAGTGACATGACGTCGCGTACA <:??A@B@B==>@>A:6=?;5<::30<==63@;;1?=;A5,=7<,4;6@0 RG:Z:474747 427_15_1039_F3 4 * 0 0 * * 0 0 AGAGTCAACTGAAGCTTCCGAGTCGTGAACGGGGGGAGGAGAGGGAAGGC BBB@@@B?A?ABB><A>?9=:=<:@:?>51:AA>?87>?979<>><>>=< RG:Z:474747 427_15_1070_F3 4 * 0 0 * * 0 0 CTACTCCCTGCATTAGATACTGGAGCTCGGCTAGAGGGATGGCGTTAAAG =>A<@><?BAA?A?>?4??=;>?@>??=:@<6?98==><<:;<8A:7=@5 RG:Z:474747 427_15_1081_F3 4 * 0 0 * * 0 0 GCTCCTCCACGATTAATCGTTGGGGTGCAATGAGAAAACAGCCAATGGCC @=AAAB@?@>?B@?=BB@?@B=@>;B@3:?BA39?>@7==<<<A?A<1A? RG:Z:474747 -427_15_423_F3 4 * 0 0 * * 0 0 GCTGGAGGAGAAAGGGGGGACCCGCAATCGAGCGTCCGATAATGAAATGG >/B@=<A=??@B>A>B@@>9?@=A6@B@9?5@6A7A@>@A?=?A/@@A?= RG:Z:474747 -427_15_646_F3 4 * 0 0 * * 0 0 CAGTTCGCTTGGTCAATCAATATAGAGAACCTGGGGAGTAGTGTCCGGAG ?@=?>=A?@??B876:@65.B<914;;<06=?914:67997;5<:/7771 RG:Z:474747 -427_15_872_F3 4 * 0 0 * * 0 0 CGGGTAGACTTTAGTACCTAGACGAAGGGAGTGACATGACGTCGCGTACA <:??A@B@B==>@>A:6=?;5<::30<==63@;;1?=;A5,=7<,4;6@0 RG:Z:474747 -427_16_1107_F3 4 * 0 0 * * 0 0 TGTGTAAGTGAGACACGAGAAGCAAGAACTGATGCCCTGCAGGGTTTAGG <+>B><:;A@B?:>>:A7B5;B@?B>8;:>8=B:B@=;@25A9A=>@1A: RG:Z:474747 427_16_264_F3 4 * 0 0 * * 0 0 CCCGATCCTAGGCAGAATCGAGAGAGACCACAACCCGCGAAAACCATTGC @<>?@@?AA?@??@>>?;:A>>A=?>=?>?:A>@@@:A8@@@:>/@>A4= RG:Z:474747 427_16_565_F3 4 * 0 0 * * 0 0 AGCTATGGAATACCAAGACATCCAAGGAACTACTGCCGAAGGTTCCGGAG BB1AABB9@@B>3>=@@,?AB<8A>@@9<=BA8<<>>4A??@:??<?6@< RG:Z:474747 -427_17_1027_F3 4 * 0 0 * * 0 0 CAGTGCAATGGGAGTAAAGCAAATTCGGCAGCCCGTGGCCGAACCGCTTG A@@BAB=>B>BAA?5>=AA8:@B@;=@?@9:>BB::?@A54=B?<0<B@: RG:Z:474747 +427_16_1107_F3 4 * 0 0 * * 0 0 TGTGTAAGTGAGACACGAGAAGCAAGAACTGATGCCCTGCAGGGTTTAGG <+>B><:;A@B?:>>:A7B5;B@?B>8;:>8=B:B@=;@25A9A=>@1A: RG:Z:474747 +427_17_46_F3 4 * 0 0 * * 0 0 CCAATGAATGAAACAGGGTACCCGCGAGCGCCTGCTGAGCTGACAGTCTC :.>A:@>@?7A@<=2?;6?;>;99=<:8;95>0:><14;@4:><:,;:8? RG:Z:474747 427_17_342_F3 4 * 0 0 * * 0 0 AGCTGGAGCTGCTGCCACGGACAAGGTCGGAGCTGAGGCTGGCTGGACTA BA?A?BB>>ABB@;;AA@@>AA>=ABB1??:B6>?>B72>@B49>?@3<< RG:Z:474747 427_17_446_F3 4 * 0 0 * * 0 0 TATGCCGTGAGACGGGGGGAAACAGACCCTACCCCGATGTATAAGGCCGG =B?>8>BA?=>B;?;>A;:<=?937;?=2;6:==;9=@3?9;51;9:149 RG:Z:474747 -427_17_46_F3 4 * 0 0 * * 0 0 CCAATGAATGAAACAGGGTACCCGCGAGCGCCTGCTGAGCTGACAGTCTC :.>A:@>@?7A@<=2?;6?;>;99=<:8;95>0:><14;@4:><:,;:8? RG:Z:474747 427_17_917_F3 4 * 0 0 * * 0 0 AAGACTACGCGTTAGGCCAAGAGAAAGACTCAAGAGACGACCTCTAAGAT @@=???A6=-;A:3<@?866@94:20<11@3;19:=:/:9<<45B@:48B RG:Z:474747 -427_1891_897_F3 16 chrX_part 26846 37 49M * 0 0 GGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATC ]]]]]]]]]]]]]]]QW]]]Z]]]]]]]]]PX]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +427_17_1027_F3 4 * 0 0 * * 0 0 CAGTGCAATGGGAGTAAAGCAAATTCGGCAGCCCGTGGCCGAACCGCTTG A@@BAB=>B>BAA?5>=AA8:@B@;=@?@9:>BB::?@A54=B?<0<B@: RG:Z:474747 427_18_267_F3 4 * 0 0 * * 0 0 CTGGCACCGAACGGAGGAAGAAATTGCGTAGATTACAGTAATCAGAAGAC AB@A;>@A@>AAAB:8B<>>@B@A=@?=@;=A<A3>?;@@?<:>+A?;A. RG:Z:474747 427_18_481_F3 4 * 0 0 * * 0 0 GGCTCGCCCCAGTATCGACGTCGTATGAGAGATGACGAGGCCCGGGCGAG AB>?;B@A>=AAA@@@A?=6B=><=B=<8>=7A2=<==5;@5>7<=3=>; RG:Z:474747 427_18_706_F3 4 * 0 0 * * 0 0 CTCTATATGGAAGGTTACTACTCAGTAACCTTAGGGACCAAGAACCGGTT >AAA@B?BAABAAAAA@@@A?B?>=B?@>>B@6??@><@@?:?A;<?=?? RG:Z:474747 427_18_834_F3 4 * 0 0 * * 0 0 GGGACCCGACCTAGGACGGACAAAGACAGGGACGACAGATATACGATTCA @@@@><?A><@A?@7@A@@6=><?;<;;7@>=?=:<:<;>=6=/:A?B?4 RG:Z:474747 427_18_846_F3 4 * 0 0 * * 0 0 GGACGCGTCACCAGAAAAACTAGGGGACGGTCCACGACCATGACGGGGAG BABB>BBBB7BBA@@ABBB1<BABA<B<A89BB?21A@@22@@A?>A@=? RG:Z:474747 -427_1927_689_F3 0 chrX_part 26924 0 49M * 0 0 AGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATC ]]ZY]]]Z[]]]ZROQFMVZ]ZYUV]ZXSLTWZUT]]]]]]Z\[ZXW[T RG:Z:474747 XT:A:R CM:i:1 X0:i:3 XM:i:2 XO:i:0 XG:i:0 MD:Z:34T14 XA:Z:chrX_part,+14818,49M,2;chrX_part,+12257,49M,2; -427_19_1049_F3 4 * 0 0 * * 0 0 TCCGCTTGGAACATACTAAAGGAGAGTATATAGATGACCAGGAAAAGCTT ?<>@:A?@B>B=>@@?>AA?B>@@@BB35@B>98<>A5/AB><<BB>8<: RG:Z:474747 427_19_11_F3 4 * 0 0 * * 0 0 CAGCCCACATGCACCCACTGGGAAGGCCACCCATGAGAAACTCCACGATC =1:<4>?><;=?><1?:>?7>=>=:<=<99:><<55;>>,@=>93>/15: RG:Z:474747 427_19_137_F3 4 * 0 0 * * 0 0 AAGCTGACGCTACCACGGACAACAGCGGTCAAGGCCGTCAGGCGAAGCGG ?78;?@?<>;=AA=;7?9<8;=<:<8><968;<9;:<:;::<53;=7+85 RG:Z:474747 427_19_296_F3 4 * 0 0 * * 0 0 CCAGAAACCTCAGCAACACACCACCTAGGCCCCCAGGGTCGGAAGATGCA B@BABBB@BBBBAA@<AAAB>@A@?AA@?@>A=?9>?>?@@@?@=?A<@@ RG:Z:474747 427_19_324_F3 4 * 0 0 * * 0 0 TGGACGATTTAATGGCAGGGAAGTGAGACAAGACTGGGGTCTGCGAAAAA A;=?3A>>:>>:<87:8483>>627=;40596=885:66>3810/843:9 RG:Z:474747 427_19_533_F3 4 * 0 0 * * 0 0 GAAAGCTCGATCGTTCGACTTTTCTTCGTCTGAGTCAATCAGACTTGGCA BA@@?>@A?>A@@@@?@<=BAB?>BA?<>3B?<;@?AB?7><@@@AA6?- RG:Z:474747 427_19_899_F3 4 * 0 0 * * 0 0 CATACCGTAGCCCAGGCAAGGAGACGCTCAGTGTAACAAGACGCAGTCGA @??B>=@<A?;@5AA8=6@B<:3A>6=57@9A2?A=;:A?4>,9A7=48@ RG:Z:474747 +427_19_1049_F3 4 * 0 0 * * 0 0 TCCGCTTGGAACATACTAAAGGAGAGTATATAGATGACCAGGAAAAGCTT ?<>@:A?@B>B=>@@?>AA?B>@@@BB35@B>98<>A5/AB><<BB>8<: RG:Z:474747 427_20_363_F3 4 * 0 0 * * 0 0 GACGTCGAGATACGGTACCCGGGCTATATTTTAGACGACTTAAAACTAGA AAAA>@B>A+BB@A7B@?<==?>=@.@9?=>A=<<1><>>>=@@?74?.@ RG:Z:474747 427_20_407_F3 4 * 0 0 * * 0 0 ATAACGGACACCTAAGAAGAGGGAGTTAACATCCAGCGTAGGGCGCGTAC BBBB?BBB?ABBBBABB@>BBB?@?AB?@@2B?@;@94B@AB??;/?@>= RG:Z:474747 427_20_608_F3 4 * 0 0 * * 0 0 ACAGCACGCGGCTGCAGGAGGGAGAGAGGGGCAAGACGGACGGGCCTGTG B@9<AB?35>@>9?=AB7:@@A6<@A=>=A@@=<=?@<;:=<-<@:=0=: RG:Z:474747 @@ -64,38 +61,34 @@ 427_23_874_F3 4 * 0 0 * * 0 0 GGAGAACTCTAAGAAAGAACTTTAAACCAGTCTTGCCCCCCGATCGTGAA <@ABBBAB=AABAAA@@BA<>A@@B?A??=A@B@@@B<BBB<=<@:>?>: RG:Z:474747 427_23_986_F3 4 * 0 0 * * 0 0 CGGTCTGTTTTGCGGGACACGAGGTCGTGAACTAGACTGCGGGTGCATCG @6=??@<<><>@A@:<=<;==>@;3=>8=;>::?8@?9=99=4:6@<67; RG:Z:474747 427_23_993_F3 4 * 0 0 * * 0 0 AGACTCCGGGACAATGAGTCCAGCAGAGGGTGATGAAGGAACGAACGGAA @>BAAA?BBB@?B@BA@ABAB?B?A@A?AAB@<AA?>@=AA<ABB@:@AA RG:Z:474747 -427_24_1040_F3 4 * 0 0 * * 0 0 CCATTTTCCCAGTGAGCACCCTTGCTTCCAATCAGGGGACTGGCTCAGAA 45/2<9A@A93A7<5:;@6=<A:7=:B5740@<698=3<:8:8-:5,220 RG:Z:474747 427_24_476_F3 4 * 0 0 * * 0 0 CAGCAGGTCCAAACGTGGATCCGCGGGCGGAGAAGGCGACACAGGGCAAA =B>:>>A<<76===6=?;3=;<<45<=6,876968:-256;693464<<< RG:Z:474747 427_24_880_F3 4 * 0 0 * * 0 0 CGTAGGTAGGCCAGGCGAGGTATTCTATCTGGGCGCAATTACCAGGAACA AAA+AB@?;@AA?;?ABA>AB>B:=BAA+@=A>4?>A?=@4?;2>9A=1? RG:Z:474747 427_24_952_F3 4 * 0 0 * * 0 0 GGTTTTTCCTTGTTCATGTGTAATCCAGTATGGAGGGCCAAAGAGAGTCC @?B>@9?@-16=9<54:-<53=6>:2;.41/<176,>8137;5:.9=905 RG:Z:474747 +427_24_1040_F3 4 * 0 0 * * 0 0 CCATTTTCCCAGTGAGCACCCTTGCTTCCAATCAGGGGACTGGCTCAGAA 45/2<9A@A93A7<5:;@6=<A:7=:B5740@<698=3<:8:8-:5,220 RG:Z:474747 +427_25_60_F3 4 * 0 0 * * 0 0 TGAGGTATGGGAGTCGTAGGCGCACTCGAGGCGCCTGAGGAAACACCCTC A/>>=?==>:>>8?:>=.=>9>84:@:96<7>6<=<93<<5;>:8==.1< RG:Z:474747 427_25_234_F3 4 * 0 0 * * 0 0 TATCAAGCAACGGGTGTATGGGGGAAGAGAAAGGCGATCCCACCAGATCA 0>@</1A7<+8A64::>4<9<@88=9>94<8@:7<9=>;?8:;195:<5> RG:Z:474747 -427_25_60_F3 4 * 0 0 * * 0 0 TGAGGTATGGGAGTCGTAGGCGCACTCGAGGCGCCTGAGGAAACACCCTC A/>>=?==>:>>8?:>=.=>9>84:@:96<7>6<=<93<<5;>:8==.1< RG:Z:474747 427_25_854_F3 4 * 0 0 * * 0 0 AGCACTCGCGTAGACAATCGACAGCCCTGACCGAGCGAATAAGGGCTGAA AA@BBB?AB=B@@@>=;B;@4?B9?=@B;@6A?9=<:A@A6:73@55>2> RG:Z:474747 427_26_256_F3 4 * 0 0 * * 0 0 GAGGGCCGGGGGGCGATCGAAGAGTCTCGAGACGAGGCCGTGTCTCGGAA BB=BAA@@BABB?7A2>-@@@>@?AAB=@8@?9><@>:7>@>:7@@45+8 RG:Z:474747 427_26_331_F3 4 * 0 0 * * 0 0 TCGCTCGCGCTAAGATACAAGGAAGCTCAACTTTTAGCGCGCATAGGCTG =73:><A;=9?<>;/A;;:<=?276:<19;;A<7<<9<3:9:-.<<>.74 RG:Z:474747 427_26_583_F3 4 * 0 0 * * 0 0 CACGCGTTATGGAGCTCGGCGAGGGGACTAGGAGCAGAGTCTGCTTAGAT AAA@ABBBB?@B@?=B;>AA?=?@A@>7A@AA>>@==@?A=B==BB7:AA RG:Z:474747 427_26_646_F3 4 * 0 0 * * 0 0 AGAAACTCTGAGCCGGACCAAAATTAGGAGATCAAGAACCCCGGGAGGCC @@AAA?A>??BB@@A?;A@=BB??:AA7=8AB:><=<==@B;:9:A:>?5 RG:Z:474747 427_26_857_F3 4 * 0 0 * * 0 0 TTAGCCGTCCGCTGTATCAATCCAGTGTAGTCGTCGTAAACGTAACGTAC >A?=>@@<><=<=><@?7<9@><?:@;@8:@@;6<8>>A9=1/A??5:@. RG:Z:474747 -427_27_1002_F3 4 * 0 0 * * 0 0 GATGCCGATAATTACACACCCCCAAGTGCGAAGGCAAAGGATGGCTTCCC >?<>B<A<=?<B;;9@A9>?@A:A=<A5<3=B:;:AA==0A>3<37A>=5 RG:Z:474747 427_27_160_F3 4 * 0 0 * * 0 0 TTAAACGTATTCTAGTACCTAAAGGAAGCTGGGCTCACAACGTTTAAAAG >>AA@@-@A?A<>A;@647A=<>9=?;:7@8;3>@2:5@<:7@?A99:?4 RG:Z:474747 427_27_231_F3 4 * 0 0 * * 0 0 GGCGGGCAAGGGCTGGGGATGGAGACGACTACTTTCCAAAGTCGGCATGC ABAA?AB=>>@B>@?@@6;B@A5;@@@=8=>;:<A?@.?;<@;8=>9<5< RG:Z:474747 427_27_369_F3 4 * 0 0 * * 0 0 CAATGCCCCTGAAATGGACGTACGCCTAACCGGAGCCGGCTGGGCTACGC ;3:7?@=34?A<3/@A?14<A8;4>7=31<98.0:<<54<77659?4.8< RG:Z:474747 427_27_778_F3 4 * 0 0 * * 0 0 GCAAATGCCGAAGAAACAGAGAGAGGGCACGGCAGGACACCACCTAGACG AA:=6AB=;=>?;=:@>6=;>>:8=@@=;7A@><?A@?=<???;@?===7 RG:Z:474747 427_27_939_F3 4 * 0 0 * * 0 0 AAGGAGGGACACAAAACCCCGGCTAATCAGAGAGCAAGGGGAGTCGTCGA 2:53=@:<@9:<?@??28>@<5:A<@>;02=6867A=<<@58->;:72/2 RG:Z:474747 -427_28_1127_F3 4 * 0 0 * * 0 0 GTCCGGGACCTCTTACCCAACACAAAGGCCGAGACCCGTTGCAACTGGCG ??BBBB?@BAB@BABA@?BBA>@BBAA=?>BB>?@A=:?@9@BA@78?B- RG:Z:474747 +427_27_1002_F3 4 * 0 0 * * 0 0 GATGCCGATAATTACACACCCCCAAGTGCGAAGGCAAAGGATGGCTTCCC >?<>B<A<=?<B;;9@A9>?@A:A=<A5<3=B:;:AA==0A>3<37A>=5 RG:Z:474747 427_28_593_F3 4 * 0 0 * * 0 0 TGGCAGAATATTACCATCTAGAGAGAAAAGAGGGTTAGACGCAGGCTAGA 4B;?>@@==;A@=;;A?-;?@@:=?BB95><@<4AA<;>:?97<>@?<89 RG:Z:474747 427_28_739_F3 4 * 0 0 * * 0 0 CAGCTCCCCGCGAAGCTCTCATTACCTCGGGGTGACTACTAAACGTTGAG 6B=@AA<;=3:B?@65@8@>5A:=>@A859<>99>4A</?:;?596A348 RG:Z:474747 427_28_798_F3 4 * 0 0 * * 0 0 TACGTAAACCACCTCGCCCGCACTCCAAAACCGAGACCTTCCCACATCAG B@@@@???<36?8:::<=?6-;89<;;:4994<.;5>A5:43>+>0+<11 RG:Z:474747 427_28_923_F3 4 * 0 0 * * 0 0 CAGCCTTGATCCTACGCTGCGCTGCCGCGAGCGTGGACGATGCTCGAGCC ?B=A?B@>A8BB@>>@>B;6>>AA;A8=:2@:::8?8>66A4?<:?4?;; RG:Z:474747 -427_292_217_F3 0 chrX_part 14846 37 49M * 0 0 GTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTTTCCTGACTT ]]]]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +427_28_1127_F3 4 * 0 0 * * 0 0 GTCCGGGACCTCTTACCCAACACAAAGGCCGAGACCCGTTGCAACTGGCG ??BBBB?@BAB@BABA@?BBA>@BBAA=?>BB>?@A=:?@9@BA@78?B- RG:Z:474747 +427_29_95_F3 4 * 0 0 * * 0 0 AGACGAAGTGGTGATGGGTGTAAACGGCCCGGCGTAGAGCACGCTCGAGC ?8?@>A><<:9??5????;;>@@9=<7?8<==>4@-==7;/5>1;4;;24 RG:Z:474747 427_29_521_F3 4 * 0 0 * * 0 0 CTCTGACGTCCCATGAACTTCGCGAAGTCACCCCGGCACAAAACGATTGC >B<@=AA===BB>?<>B:>>@;<6>=?>/;>B?<=3@0;?>><88=;<03 RG:Z:474747 427_29_911_F3 4 * 0 0 * * 0 0 GTCCGCCAGTCCAGACTGGACAATTCGGACAACGGGCTGAGGCTAGGGAC B?BA@BA@B@?AAB=?@ABB=@BBB@B>A<>@@BA<=?BA>?=@B<B<@= RG:Z:474747 -427_29_95_F3 4 * 0 0 * * 0 0 AGACGAAGTGGTGATGGGTGTAAACGGCCCGGCGTAGAGCACGCTCGAGC ?8?@>A><<:9??5????;;>@@9=<7?8<==>4@-==7;/5>1;4;;24 RG:Z:474747 427_29_970_F3 4 * 0 0 * * 0 0 GAGCTCGACGCGGGCGAACAAGTGAATGCCTCGAACAGACAGAGCGGCGA A@78BAB:>=BB9;>BA89BAA88AAB-:=@@4<<A@2:>>>.,9>B-78 RG:Z:474747 427_29_978_F3 4 * 0 0 * * 0 0 ACCCCAAATTTCCGCGCTTACAAACATCTGCGACAAAGATATGGTCCCGG A?@BAB@?B?AA?B?@B@BA>ABB?A?9A@??=7@AB/A?<A?<@@@=@? RG:Z:474747 -427_30_1018_F3 4 * 0 0 * * 0 0 CAGAAAGGCCCCTAAGGCACACACCCGCATGAGGCCAGGCTACCCCAAGC @@@AABB@B?A@;4AAA<;A?A>4AAA98BAA:9A@B=3B;A;:A>A=,B RG:Z:474747 -427_30_1044_F3 4 * 0 0 * * 0 0 CCCTTCGGAGGCGGACCAAGACAGCTAGGGAGGGAGAAAAAAGAAGAAAC ?BA@ABB=;AA><==AB>=@>A@=>=A?=A=A>9A7BABB@A3@A.<76+ RG:Z:474747 -427_30_1053_F3 4 * 0 0 * * 0 0 CGCCGTGCGCTTCTATCGTGGGACGCAAGTTCCGGATGATGACAATACGT <?A=@@ABB>BB@?@;;8A@>@??@>=A<A=9?@?9=9@<.:<BB:9<== RG:Z:474747 427_30_261_F3 4 * 0 0 * * 0 0 AAGAGCGGCGGCCAAGAGGCTGCTATTGAAGCCTTGCCCGTTCACCACCC A?>??A@@>?@@=@<@<??=A?>@>BA<>>>@7>?<??>>=<=<=>:;?@ RG:Z:474747 427_30_606_F3 4 * 0 0 * * 0 0 AGTAGGAACCTTACACACGGGAGGCAATCCCTGGCGTGAGGCTCGAGGGA >?@8=@@:<<@A86;A=88>@?8/-<??699A929>>667<9=59>881: RG:Z:474747 427_30_752_F3 4 * 0 0 * * 0 0 CGGCGGAGGCAGACGCACCATACTGCAACGGAGGAGGGCAAGATGGCGAT @B@=?B?@>=>A.<>>;8;9@@<>;AA:;;??8:3@>:;8<=6=6:0624 RG:Z:474747 @@ -103,101 +96,108 @@ 427_30_773_F3 4 * 0 0 * * 0 0 CGTTGCGCAAGAGAAACCGCAGCTACGGCACCGCCGTATACCTAATCCAA <@BBB=BBB@=?@B?=A@@==@@@@=B??===@>>;>A=7A@@8<8<>>? RG:Z:474747 427_30_959_F3 4 * 0 0 * * 0 0 AGGGAGACATAGCCTGCACTCCCAACCAATTTGCCACGAAATGGTCATAT >=@@?@=?;BA@>9BA=:=BAB=;:AA;9BB?88<==;??=?79;6677@ RG:Z:474747 427_30_983_F3 4 * 0 0 * * 0 0 CGTCTGACTAGGACTGAGAACCTCACCCTGGGCTCTCTAGAGAGGCTCCG >?@B?BA@A=BAB>@BAAB?B@AA=BB?@?B@A@9A:A<7B<B@>B<@@A RG:Z:474747 +427_30_1018_F3 4 * 0 0 * * 0 0 CAGAAAGGCCCCTAAGGCACACACCCGCATGAGGCCAGGCTACCCCAAGC @@@AABB@B?A@;4AAA<;A?A>4AAA98BAA:9A@B=3B;A;:A>A=,B RG:Z:474747 +427_30_1044_F3 4 * 0 0 * * 0 0 CCCTTCGGAGGCGGACCAAGACAGCTAGGGAGGGAGAAAAAAGAAGAAAC ?BA@ABB=;AA><==AB>=@>A@=>=A?=A=A>9A7BABB@A3@A.<76+ RG:Z:474747 +427_30_1053_F3 4 * 0 0 * * 0 0 CGCCGTGCGCTTCTATCGTGGGACGCAAGTTCCGGATGATGACAATACGT <?A=@@ABB>BB@?@;;8A@>@??@>=A<A=9?@?9=9@<.:<BB:9<== RG:Z:474747 427_31_153_F3 4 * 0 0 * * 0 0 GACAAGGAACTGCCAGGCCGGAGCGGAAGACGTACCATCATCAGCGCGGG ?>=>9AA?@;@A?;9@@:;;>>6<;?@9<<<A@8<><=8@A=>1?9>:9= RG:Z:474747 427_31_598_F3 4 * 0 0 * * 0 0 GGCAGGGTCTGGCTAGCATCGGTTAAGGATCTGGGGGAAGAGAATCTACG BBA?AB@?/-ABA=9A:1?9BA@@<8@>0<>?=<>@@=?::AA>@::99= RG:Z:474747 -427_71_906_F3 16 chrX_part 28077 25 49M * 0 0 CTTTGAAGCAATTGCGAATGGGAGTTCACTCATGATTTGGCTCTCTGTT []XNU]\]WO\]]]]]\]YX]]]]]]]]]]]]]]]W]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:14T34 +427_71_906_F3 16 chrX_part 28077 25 49M * 0 0 CTTTGAAGCAATTGCGAATGGGAGTTCACTCATGATTTGGCTCTCTGTT []XNU]\]WO\]]]]]\]YX]]]]]]]]]]]]]]]W]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:14T34 +427_292_217_F3 0 chrX_part 14846 37 49M * 0 0 GTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTTTCCTGACTT ]]]]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 427_794_484_F3 4 * 0 0 * * 0 0 GCTCATACGGACGAGACACCCGTTCCACGATTGAGGCCACCGGGGGGAAT A@BAABBBA=ABBA=@@B?4<BAA4>A@81@B@26>A@+<>=?<;?BB:2 RG:Z:474747 +427_1253_1057_F3 0 chrX_part 14947 37 49M * 0 0 TTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTTTTCATGTGTCT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]VZ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +427_1299_965_F3 16 chrX_part 13217 25 49M * 0 0 GGGATGCTCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAGTTCTG ][]]]]Y]]]]Z]]]]]]]]]Z]]]]Y]]]]]]]]Y]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:7C41 +427_1444_687_F3 16 chrX_part 25682 37 49M * 0 0 TCATTCTCAGCAAACTATCGCAAGGACAAAAAACCAAACACCGCATGTT ]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +427_1522_8_F3 0 chrX_part 12254 0 49M * 0 0 ACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCAC )]]]]]]]]]]]]]PU]]][]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:34C14 XA:Z:chrX_part,+26921,49M,3; +427_1891_897_F3 16 chrX_part 26846 23 49M * 0 0 GGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATC ]]]]]]]]]]]]]]]QW]]]Z]]]]]]]]]PX]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,-14740,49M,3; +427_1927_689_F3 0 chrX_part 26924 0 49M * 0 0 AGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATC ]]ZY]]]Z[]]]ZROQFMVZ]ZYUV]ZXSLTWZUT]]]]]]Z\[ZXW[T RG:Z:474747 XT:A:R CM:i:1 X0:i:3 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:34T14 XA:Z:chrX_part,+14818,49M,2;chrX_part,+12257,49M,2; +428_247_467_F3 4 * 0 0 * * 0 0 CTACCCCGCGCGAGACCCATCACACGACGTGCAATCCGCGAACCACACCG ABAABAAAB@AAAA?>>?AA:?@A:9=>A@4;?B@<>8B>.8?A>1:<@> RG:Z:474747 +428_385_1306_F3 0 chrX_part 27180 37 49M * 0 0 TTTCTTGTAAATTTGTTTAAGTTTCTTGTAGATTCTGGATATTAGCCCT ]]]]]]]]]]]]]]YW]]]][]]]MN]]]]]]]]]]]]]]]]]][]]\Z RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:23C25 +428_435_1382_F3 0 chrX_part 14761 0 49M * 0 0 ATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]]ZJ RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:35C13 XA:Z:chrX_part,+26867,49M,2; +428_589_1697_F3 4 * 0 0 * * 0 0 CGAGTCTAGAAGAACGAAACGCGCCCCAGGCCGAAGTCTAAGGGGGGCCA @1>B6<<;A?@?B></=B@@/>>B???5?:=<=?9:=12><:>>;:<577 RG:Z:474747 +428_615_1095_F3 16 chrX_part 28737 37 49M * 0 0 ATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTC ]]Y]]]WY]]]]]]MX]]]]]]]]S\]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +428_628_321_F3 0 chrX_part 28192 37 49M * 0 0 CTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACAATGGGGT ]]]]]]]]]]]]]]]]]]U]]Z[Y[]]]W\]QO\]\ZYPPVU]XY]\WU RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +428_666_413_F3 0 chrX_part 27425 37 49M * 0 0 CTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAACGTTTAAGTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]][]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:40A8 +428_912_273_F3 4 * 0 0 * * 0 0 TCCACCGCGAAACGGGCCCCGTCCAGAAAGAGAGCCCCGACTCCCCAGGG BAABBBB@@BABA@BB@>??BB@A?@A=@<>@??<ABBA::@A@@@@9>< RG:Z:474747 428_1011_1047_F3 4 * 0 0 * * 0 0 TCGCGCCGCCCTAAAGCCCAGAGTTAAGGGACCCTGAGGGGACGTCCAGC BB?>?BA@<>?B>=?A?>8@AB@A?A@>;=>>??@>A?==@?=6@>7;5> RG:Z:474747 -428_1380_646_F3 16 chrX_part 3496 37 49M * 0 0 ATAAAGAAGGTGGTTTTCAGGTCTATATTCAATGGCTCTGGTGTAATAG ]]]]]]VX][[]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +428_1380_646_F3 16 chrX_part 3496 37 49M * 0 0 ATAAAGAAGGTGGTTTTCAGGTCTATATTCAATGGCTCTGGTGTAATAG ]]]]]]VX][[]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 428_1424_131_F3 4 * 0 0 * * 0 0 CTCTATTAGCCCATTGTCAAGGCGACAGACACACAACAATCCGACACCAT 6B7?@BB>:>AB:@BBA>>8B8;:7><<>=9<6<+>8><<?@9>05<46= RG:Z:474747 -428_1495_1538_F3 0 chrX_part 26855 37 49M * 0 0 GGATCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:2G46 +428_1495_1538_F3 0 chrX_part 26855 37 49M * 0 0 GGATCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:2G46 428_1562_623_F3 4 * 0 0 * * 0 0 CATGTATTTGACGGATGGTCCAAGGACGATAACCAATAATCCAGGAAAAA ;@A@BABA?AA@A<B?@?==@BA=:?@?><?>?5:==A?4:>?32:=@?< RG:Z:474747 -428_1569_464_F3 0 chrX_part 26911 0 49M * 0 0 GAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCT &)]]]]]]\]]]]]]]]]]]]]]]LS]]YS]]]]Z]]]]X\]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 XM:i:3 XO:i:0 XG:i:0 MD:Z:47T1 XA:Z:chrX_part,+12244,49M,3; +428_1569_464_F3 0 chrX_part 26911 0 49M * 0 0 GAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCT &)]]]]]]\]]]]]]]]]]]]]]]LS]]YS]]]]Z]]]]X\]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:47T1 XA:Z:chrX_part,+12244,49M,3; 428_1573_204_F3 4 * 0 0 * * 0 0 ACAAGTCATGTGACGCAATCACTTAAGGTGCAGGTGGTGAAGCGGAGATG B=;=ABA9:AB@;=AA44>5?;==65=2;978?:;19?/@-1=<==3?:= RG:Z:474747 -428_1632_1017_F3 0 chrX_part 14942 37 49M * 0 0 TTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTTTTCATG ]]]]]]]]]]]]]]]]]]Z\]]]YU]]]]]]]]RS]]]]]W]]T[TT]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +428_1632_1017_F3 0 chrX_part 14942 23 49M * 0 0 TTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTTTTCATG ]]]]]]]]]]]]]]]]]]Z\]]]YU]]]]]]]]RS]]]]]W]]T[TT]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+27049,49M,2; 428_1643_455_F3 4 * 0 0 * * 0 0 TAGTCTAGGATTTCCCACACCACCGGCCAACCGGGGGTACAATGCTCGGC A>>A>AA?;BBBAA>B@@?=AA@@<9>>@@??>A?<=<B@=75<A>;:<@ RG:Z:474747 -428_1684_1168_F3 16 chrX_part 27017 37 49M * 0 0 CTAACTGGTGTGAGATGGTATCTCATTGTGGTTTTGATTTGCATTTCTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -428_1691_159_F3 16 chrX_part 14618 37 49M * 0 0 TTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGC ]TO]UY]]]]]]]]]]]]VT]]]]]]]]]]]]]]]]]]]]]]]]]]]+/ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 -428_1816_859_F3 0 chrX_part 14837 37 49M * 0 0 AGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +428_1684_1168_F3 16 chrX_part 27017 37 49M * 0 0 CTAACTGGTGTGAGATGGTATCTCATTGTGGTTTTGATTTGCATTTCTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +428_1691_159_F3 16 chrX_part 14618 37 49M * 0 0 TTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGC ]TO]UY]]]]]]]]]]]]VT]]]]]]]]]]]]]]]]]]]]]]]]]]]+/ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +428_1816_859_F3 0 chrX_part 14837 37 49M * 0 0 AGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 428_1829_1041_F3 4 * 0 0 * * 0 0 AATAGTGTCACATCGCGAAGGAGCCCGGATACAGAAAAACGTCGAATAAG ,??A@9AB>@5AA>A9A?=?:B=?:5A=;>8@;:89A>=92A96<4@>;9 RG:Z:474747 -428_1841_222_F3 16 chrX_part 26855 37 49M * 0 0 GGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATGGCCACACTG ]\Z]]YV]]]]]]]][S[]]]SQ]]]]]]]]\]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:39C9 -428_1971_118_F3 16 chrX_part 27350 25 49M * 0 0 TGGCTTTTGTTGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCC XX]]]]]]][Y]]\]]\]]WX]]]\]]]]\\]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:7G41 -428_1978_162_F3 16 chrX_part 28066 25 49M * 0 0 TATTTTATCCTCTTTGAAGCAATTGTGAATGGGAGTTCACTCATGATTT ]]]]]]]]SS]]]]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:8T40 -428_247_467_F3 4 * 0 0 * * 0 0 CTACCCCGCGCGAGACCCATCACACGACGTGCAATCCGCGAACCACACCG ABAABAAAB@AAAA?>>?AA:?@A:9=>A@4;?B@<>8B>.8?A>1:<@> RG:Z:474747 -428_385_1306_F3 0 chrX_part 27180 37 49M * 0 0 TTTCTTGTAAATTTGTTTAAGTTTCTTGTAGATTCTGGATATTAGCCCT ]]]]]]]]]]]]]]YW]]]][]]]MN]]]]]]]]]]]]]]]]]][]]\Z RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:23C25 -428_435_1382_F3 0 chrX_part 14761 0 49M * 0 0 ATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]]ZJ RG:Z:474747 XT:A:R CM:i:1 X0:i:2 XM:i:2 XO:i:0 XG:i:0 MD:Z:35C13 XA:Z:chrX_part,+26867,49M,2; -428_589_1697_F3 4 * 0 0 * * 0 0 CGAGTCTAGAAGAACGAAACGCGCCCCAGGCCGAAGTCTAAGGGGGGCCA @1>B6<<;A?@?B></=B@@/>>B???5?:=<=?9:=12><:>>;:<577 RG:Z:474747 -428_615_1095_F3 16 chrX_part 28737 37 49M * 0 0 ATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTC ]]Y]]]WY]]]]]]MX]]]]]]]]S\]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -428_628_321_F3 0 chrX_part 28192 37 49M * 0 0 CTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACAATGGGGT ]]]]]]]]]]]]]]]]]]U]]Z[Y[]]]W\]QO\]\ZYPPVU]XY]\WU RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -428_666_413_F3 0 chrX_part 27425 37 49M * 0 0 CTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAACGTTTAAGTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]][]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:40A8 -428_912_273_F3 4 * 0 0 * * 0 0 TCCACCGCGAAACGGGCCCCGTCCAGAAAGAGAGCCCCGACTCCCCAGGG BAABBBB@@BABA@BB@>??BB@A?@A=@<>@??<ABBA::@A@@@@9>< RG:Z:474747 -429_1074_1497_F3 0 chrX_part 26923 0 49M * 0 0 TAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACAT ]]]]]]]]]]]]VV]]]XZ]]]]]]]]]]]]]YZ]]]]]]]]\[]]][Y RG:Z:474747 XT:A:R CM:i:1 X0:i:2 XM:i:3 XO:i:0 XG:i:0 MD:Z:35T13 XA:Z:chrX_part,+12256,49M,3; -429_1244_262_F3 16 chrX_part 27844 37 49M * 0 0 TTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCAT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -429_1264_776_F3 16 chrX_part 27356 37 49M * 0 0 TGGTTGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCC %!X\[]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]* RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +428_1841_222_F3 16 chrX_part 26855 37 49M * 0 0 GGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATGGCCACACTG ]\Z]]YV]]]]]]]][S[]]]SQ]]]]]]]]\]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:39C9 +428_1971_118_F3 16 chrX_part 27350 25 49M * 0 0 TGGCTTTTGTTGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCC XX]]]]]]][Y]]\]]\]]WX]]]\]]]]\\]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:7G41 +428_1978_162_F3 16 chrX_part 28066 25 49M * 0 0 TATTTTATCCTCTTTGAAGCAATTGTGAATGGGAGTTCACTCATGATTT ]]]]]]]]SS]]]]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:8T40 +429_320_1424_F3 4 * 0 0 * * 0 0 ATTGAGCGGGCGAACTGCGAGCACTGATTGCGTGATAGAGGGTAAACAAT BB?9=>B<=><BA<??@=;=:=A5=?@A>==AA48?72:<>>=??@:33= RG:Z:474747 +429_498_1544_F3 0 chrX_part 12236 0 49M * 0 0 GACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:1T47 XA:Z:chrX_part,+26903,49M,2; +429_517_617_F3 0 chrX_part 27136 23 49M * 0 0 CTGTTCATGTCCTTTGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+27136,49M,3; +429_525_1146_F3 16 chrX_part 14836 37 49M * 0 0 CAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGT TTXVUPQYSVYW]]]TT]]]OT]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +429_566_873_F3 16 chrX_part 28192 37 49M * 0 0 CTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACAATGGGGT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +429_627_1289_F3 4 * 0 0 * * 0 0 TTAGCGCCTACTGAAACTGCAGTGTCACATCGCGAAGGAGCCCGGATACA BBBBBBA?BBBB<BBB@@A@B@?=A@>>@AA??>?>B>:=A>===??<<B RG:Z:474747 +429_641_991_F3 0 chrX_part 27721 37 49M * 0 0 ACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]][ RG:Z:474747 XT:A:U CM:i:2 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:35C0A12 +429_706_923_F3 0 chrX_part 14842 37 49M * 0 0 AAAAGTGTTCCTATTTCTCCACCTCCTCTCCAGCACCTGTTGTTTCCTG LY]]]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:22A26 +429_820_1223_F3 16 chrX_part 27415 25 49M * 0 0 ATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAA [VUZ]]]]]]]]]]TT]]]]]U]]RZ]]]]]]]]]Y]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:9T39 +429_880_338_F3 4 * 0 0 * * 0 0 GATGTGAACCCGGAATTCCAACGTCACTGCGGGGATTCGTTTAACCCAGG A@A?BBAA@@?B>A@@A=?B?A8?;=A=>@@A?>?@A8;AAA=A<?<;>= RG:Z:474747 +429_899_643_F3 4 * 0 0 * * 0 0 CACAAAATTCACAAATGACGGTACTCAATAGCGGAATATGACTGGACGAT ?AB@6>?AB<=@AA@>@<A>=B@=>3@?@><A@@=>>?A=>;B8=@@6<< RG:Z:474747 +429_1074_1497_F3 0 chrX_part 26923 0 49M * 0 0 TAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACAT ]]]]]]]]]]]]VV]]]XZ]]]]]]]]]]]]]YZ]]]]]]]]\[]]][Y RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:35T13 XA:Z:chrX_part,+12256,49M,3; +429_1244_262_F3 16 chrX_part 27844 23 49M * 0 0 TTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCAT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+15141,49M,2; +429_1264_776_F3 16 chrX_part 27356 37 49M * 0 0 TGGTTGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCC %!X\[]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]* RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 429_1285_1614_F3 4 * 0 0 * * 0 0 TGTAGTTGCTACCACAGCCTAACAACACACAGACAGCGGAACTGTTACCC A@BB?ABBBBBBBABBBB?AABBA@<BB?A@B>6@=@@;BA@@>@;?B?? RG:Z:474747 429_1292_826_F3 4 * 0 0 * * 0 0 CGGTGAGGCTCCCGTCAAAGGAATATCACTGCGGGCCGACCGATCACAGT >A@A?AA>?BBB>@@;:?3>A?@??7@@;A=?<<<>=;@??<?9?7<A2A RG:Z:474747 -429_1304_326_F3 0 chrX_part 12249 0 49M * 0 0 GTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTC ]]]]]]]]]]]]]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 XM:i:3 XO:i:0 XG:i:0 MD:Z:39C9 XA:Z:chrX_part,+26916,49M,3; -429_1398_1503_F3 0 chrX_part 27821 37 49M * 0 0 TCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCAT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y[]]]\]]]]X\]]\U]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -429_1427_1475_F3 16 chrX_part 27983 25 49M * 0 0 TATCCTCTTTTATTTCATTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAG ]]]TOYT\]]]]]]]]]]]]]X]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:16C32 -429_1568_890_F3 0 chrX_part 13190 25 49M * 0 0 ATTCCCTTTGAAAACTGGCACAAGACAGGGATACCCTCTCTCACCACTC ]]]]]]]]]]]QT]]]PT]]]R]]]]MS]]]]]]]]QT]]]\]]]]QU] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:32G16 -429_1819_792_F3 16 chrX_part 3467 37 49M * 0 0 GTACGAAGAAAACAAAGAGCTCGGTTACCATAAAGAAGGTGGTTTTCAG [UMBRWX]UW]]]]]]]]]]]]]TU]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -429_1854_1258_F3 16 chrX_part 27411 25 49M * 0 0 CTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGT ]]]][[]Z]]]]]]]]]]]]]]]]]Z]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:13T35 -429_1876_126_F3 16 chrX_part 27366 37 49M * 0 0 TGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCCTATGTCCTGA W]Z]]]]\]]]]]]]]]]]]]]]]]]]]]]]][]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -429_1899_322_F3 0 chrX_part 27853 37 49M * 0 0 TCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTAT ]]]]]]]]]]]]]]\]]][Z]]]]Z\]]]]]]\\VZ]]]]]]SW]]]Z\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:48C0 -429_1905_281_F3 16 chrX_part 26882 37 49M * 0 0 TCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTAC ]]]][X]]]]]]]]]]]]]YX]]]X]]]]]]]]]Y]]]]]]]]]]]]]\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:29G19 -429_1921_1124_F3 16 chrX_part 26708 0 49M * 0 0 TTAATCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTG ]]]]]]]]\Y]]]]]]]]]]\]]][]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:0 X0:i:2 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,-14602,49M,1; -429_1925_1090_F3 0 chrX_part 28003 25 49M * 0 0 AGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:45A3 -429_320_1424_F3 4 * 0 0 * * 0 0 ATTGAGCGGGCGAACTGCGAGCACTGATTGCGTGATAGAGGGTAAACAAT BB?9=>B<=><BA<??@=;=:=A5=?@A>==AA48?72:<>>=??@:33= RG:Z:474747 -429_498_1544_F3 0 chrX_part 12236 0 49M * 0 0 GACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 XM:i:2 XO:i:0 XG:i:0 MD:Z:1T47 XA:Z:chrX_part,+26903,49M,2; -429_517_617_F3 0 chrX_part 27136 37 49M * 0 0 CTGTTCATGTCCTTTGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -429_525_1146_F3 16 chrX_part 14836 37 49M * 0 0 CAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGT TTXVUPQYSVYW]]]TT]]]OT]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -429_566_873_F3 16 chrX_part 28192 37 49M * 0 0 CTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACAATGGGGT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -429_627_1289_F3 4 * 0 0 * * 0 0 TTAGCGCCTACTGAAACTGCAGTGTCACATCGCGAAGGAGCCCGGATACA BBBBBBA?BBBB<BBB@@A@B@?=A@>>@AA??>?>B>:=A>===??<<B RG:Z:474747 -429_641_991_F3 0 chrX_part 27721 37 49M * 0 0 ACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]][ RG:Z:474747 XT:A:U CM:i:2 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:35C0A12 -429_706_923_F3 0 chrX_part 14842 37 49M * 0 0 AAAAGTGTTCCTATTTCTCCACCTCCTCTCCAGCACCTGTTGTTTCCTG LY]]]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:22A26 -429_820_1223_F3 16 chrX_part 27415 25 49M * 0 0 ATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAA [VUZ]]]]]]]]]]TT]]]]]U]]RZ]]]]]]]]]Y]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:9T39 -429_880_338_F3 4 * 0 0 * * 0 0 GATGTGAACCCGGAATTCCAACGTCACTGCGGGGATTCGTTTAACCCAGG A@A?BBAA@@?B>A@@A=?B?A8?;=A=>@@A?>?@A8;AAA=A<?<;>= RG:Z:474747 -429_899_643_F3 4 * 0 0 * * 0 0 CACAAAATTCACAAATGACGGTACTCAATAGCGGAATATGACTGGACGAT ?AB@6>?AB<=@AA@>@<A>=B@=>3@?@><A@@=>>?A=>;B8=@@6<< RG:Z:474747 +429_1304_326_F3 0 chrX_part 12249 0 49M * 0 0 GTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTC ]]]]]]]]]]]]]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:39C9 XA:Z:chrX_part,+26916,49M,3; +429_1398_1503_F3 0 chrX_part 27821 23 49M * 0 0 TCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCAT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y[]]]\]]]]X\]]\U]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,-15164,49M,2; +429_1427_1475_F3 16 chrX_part 27983 25 49M * 0 0 TATCCTCTTTTATTTCATTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAG ]]]TOYT\]]]]]]]]]]]]]X]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:16C32 +429_1568_890_F3 0 chrX_part 13190 25 49M * 0 0 ATTCCCTTTGAAAACTGGCACAAGACAGGGATACCCTCTCTCACCACTC ]]]]]]]]]]]QT]]]PT]]]R]]]]MS]]]]]]]]QT]]]\]]]]QU] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:32G16 +429_1819_792_F3 16 chrX_part 3467 37 49M * 0 0 GTACGAAGAAAACAAAGAGCTCGGTTACCATAAAGAAGGTGGTTTTCAG [UMBRWX]UW]]]]]]]]]]]]]TU]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +429_1854_1258_F3 16 chrX_part 27411 25 49M * 0 0 CTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGT ]]]][[]Z]]]]]]]]]]]]]]]]]Z]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:13T35 +429_1876_126_F3 16 chrX_part 27366 37 49M * 0 0 TGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCCTATGTCCTGA W]Z]]]]\]]]]]]]]]]]]]]]]]]]]]]]][]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +429_1899_322_F3 0 chrX_part 27853 37 49M * 0 0 TCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTAT ]]]]]]]]]]]]]]\]]][Z]]]]Z\]]]]]]\\VZ]]]]]]SW]]]Z\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:48C0 +429_1905_281_F3 16 chrX_part 26882 37 49M * 0 0 TCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTAC ]]]][X]]]]]]]]]]]]]YX]]]X]]]]]]]]]Y]]]]]]]]]]]]]\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:29G19 +429_1921_1124_F3 16 chrX_part 26708 0 49M * 0 0 TTAATCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTG ]]]]]]]]\Y]]]]]]]]]]\]]][]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:0 X0:i:2 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,-14602,49M,1; +429_1925_1090_F3 0 chrX_part 28003 25 49M * 0 0 AGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:45A3 +430_78_1025_F3 0 chrX_part 14935 23 49M * 0 0 TTGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]]]]]]]]Z]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+27042,49M,3; +430_89_1672_F3 4 * 0 0 * * 0 0 GGCGGAGATGTTACCCCGCGCGAGACCCATCACACGACGTGCAATCCGCG B?B?9@B@>=A@B=>A>?A@B<@==?=?@;>7A?>53A;>32@BAB>6?; RG:Z:474747 +430_131_637_F3 4 * 0 0 * * 0 0 ACCAGAGTTAAGGGACCCTGATTGGACGTCCAGCCACCAAGAGCGCGAAA 8??<>>@@8B68>?9=A8?=BB<AAA>0@;@<<A<>A9B@>A8=:@=A?; RG:Z:474747 +430_179_99_F3 0 chrX_part 14832 37 49M * 0 0 CCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +430_392_28_F3 0 chrX_part 12248 0 49M * 0 0 GGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTT ]]]]]]]]]]]]]]]]]]]]]]]]][]]]]]]\]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:40C8 XA:Z:chrX_part,+26915,49M,2; +430_491_367_F3 0 chrX_part 27259 37 49M * 0 0 TCCCATTTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]ZX]]]UU][]]]]]ZHR] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +430_607_895_F3 0 chrX_part 26847 23 49M * 0 0 GGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCG *]]]]]]]]]]]]]]]]]\]]]]]]]]ZZ]]]]\]]]]]]]]]Z[]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+14741,49M,2; +430_688_525_F3 16 chrX_part 27375 37 45M1D4M * 0 0 TGTTTTAGACATGAAGTCCTTGCCCATGCCTATGTCCTGAATGGTATGT WW]]]]]Z]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]]]"!] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:45^A4 +430_691_1191_F3 0 chrX_part 26852 0 49M * 0 0 GCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:0 X0:i:2 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+14746,49M,1; +430_693_248_F3 0 chrX_part 14829 37 49M * 0 0 CCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCAC -]]]]]]]]]]]]]]]Z]]]]]]][]]]]]]]]]]]]]]]]]]]]]]]\ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +430_821_1672_F3 4 * 0 0 * * 0 0 ATCGGCTGGCGCCAAGAATGTATTTGACGGATGGTCCATCGACGGCAACC A@?AAAAAA@=?:BA>B@>ABA?@A?B>:=@?<<:@>B=74@B;=><@65 RG:Z:474747 +430_874_1668_F3 4 * 0 0 * * 0 0 GAGAATTAAGGAAGGGAGCTAGCGTACTAAGCATACGGACGAGACACCCG A@AA>A@AB=@BAA@A@>@?B@=@?B@:A@?>:>A>=69@=@8A@@:/9? RG:Z:474747 +430_900_444_F3 0 chrX_part 26504 37 49M * 0 0 GTGATGTTCCCCTTCCTGTGTCCATGTGTTCTCATTGTTCAATTCCCAC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:11T37 430_1055_244_F3 4 * 0 0 * * 0 0 CGATGTTACCCCGCGCGAGACCCATCACACGACGTGCAATCCGCGAACCA ?BBBBBBBBBBBBBABB@BB@=<AB<>>B>9?<AB;:>BB@@<B?>3A@@ RG:Z:474747 430_1080_625_F3 4 * 0 0 * * 0 0 AGAACTAGGCCTGACACTAGCCAGCCGGGCGTCACTGCAAGGAAACTGCC B=BBBBBBBB>BBBB@?BA@B?@AB>A@AA>A7A@B?+@7A>A?<B-=>@ RG:Z:474747 -430_1105_227_F3 16 chrX_part 27741 37 49M * 0 0 TTTGAAGTCAGGTAGCGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGG ]]]]]]]][\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:16A32 +430_1105_227_F3 16 chrX_part 27741 37 49M * 0 0 TTTGAAGTCAGGTAGCGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGG ]]]]]]]][\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:16A32 430_1195_1598_F3 4 * 0 0 * * 0 0 CCTTTTTCAACAAGAGTATTTAATGCTCTGCTGTTTAAGGCCCCTCTCCC @B@BBBBBBABBB@BBBBBBB@AA><6.=>@=5<BA4A5>@8A7B>48:7 RG:Z:474747 -430_1270_1392_F3 0 chrX_part 27268 37 49M * 0 0 GTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGC ]]]]]]]]]]]]]]]]]]]]]]XW]]]SU]]]]]]]]]]]]]QT]]]Q[ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -430_1280_786_F3 0 chrX_part 28246 37 49M * 0 0 AGATATACAATCATGTCATCTGCAAACAGGGACAATTTGACTTCATCTT ]]]]]]]]]]]]]]]]]]]]]]]SX]]]]]]]][]]]\RW]]]SZ]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:44C4 -430_1307_10_F3 0 chrX_part 26911 0 49M * 0 0 GAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCT !"]]]]]]]]]]]]]]]]]]]]]]]]]]ZR]]]]]]]]]X[]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 XM:i:3 XO:i:0 XG:i:0 MD:Z:47T1 XA:Z:chrX_part,+12244,49M,3; -430_131_637_F3 4 * 0 0 * * 0 0 ACCAGAGTTAAGGGACCCTGATTGGACGTCCAGCCACCAAGAGCGCGAAA 8??<>>@@8B68>?9=A8?=BB<AAA>0@;@<<A<>A9B@>A8=:@=A?; RG:Z:474747 -430_1403_722_F3 0 chrX_part 12260 0 49M * 0 0 TTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:3 XM:i:2 XO:i:0 XG:i:0 MD:Z:28C20 XA:Z:chrX_part,+14821,49M,2;chrX_part,+26927,49M,2; -430_1406_34_F3 0 chrX_part 26518 37 49M * 0 0 CCTGTGTCCACGTGTTCTCATTGTTCAATTCCCACCTATGAGTGAGAAC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:10T38 -430_1531_1322_F3 0 chrX_part 26775 25 49M * 0 0 CAATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATAATC ]WP]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:46G2 -430_1586_641_F3 0 chrX_part 28277 25 49M * 0 0 ACAATTTGACTTCCTCTTTTCCTAATTGAATGCCCTTTATTTCCTTCTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:31A17 -430_1684_261_F3 16 chrX_part 27257 25 49M * 0 0 TCTCCCATTCTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGC QS]TU]]]YXVX]XJQX]]]][]YS]]]]\]]]\]]]]\]]]]]]]]], RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:9T39 +430_1270_1392_F3 0 chrX_part 27268 37 49M * 0 0 GTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGC ]]]]]]]]]]]]]]]]]]]]]]XW]]]SU]]]]]]]]]]]]]QT]]]Q[ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +430_1280_786_F3 0 chrX_part 28246 23 49M * 0 0 AGATATACAATCATGTCATCTGCAAACAGGGACAATTTGACTTCATCTT ]]]]]]]]]]]]]]]]]]]]]]]SX]]]]]]]][]]]\RW]]]SZ]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:44C4 XA:Z:chrX_part,+28246,49M,3; +430_1307_10_F3 0 chrX_part 26911 0 49M * 0 0 GAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCT !"]]]]]]]]]]]]]]]]]]]]]]]]]]ZR]]]]]]]]]X[]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:47T1 XA:Z:chrX_part,+12244,49M,3; +430_1403_722_F3 0 chrX_part 12260 0 49M * 0 0 TTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:3 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:28C20 XA:Z:chrX_part,+14821,49M,2;chrX_part,+26927,49M,2; +430_1406_34_F3 0 chrX_part 26518 37 49M * 0 0 CCTGTGTCCACGTGTTCTCATTGTTCAATTCCCACCTATGAGTGAGAAC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:10T38 +430_1531_1322_F3 0 chrX_part 26775 25 49M * 0 0 CAATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATAATC ]WP]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:46G2 +430_1586_641_F3 0 chrX_part 28277 25 49M * 0 0 ACAATTTGACTTCCTCTTTTCCTAATTGAATGCCCTTTATTTCCTTCTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:31A17 +430_1684_261_F3 16 chrX_part 27257 25 49M * 0 0 TCTCCCATTCTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGC QS]TU]]]YXVX]XJQX]]]][]YS]]]]\]]]\]]]]\]]]]]]]]], RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:9T39 430_1726_1548_F3 4 * 0 0 * * 0 0 TTTTCGACGACGAAGCTGCAAAAAGACATAGGCCCGAGGAAGCGCTACAC ;BBB=9@BAA3AA@>4=A>?<A@@=8<?;@8@@>>2=>8A69>5>4<==< RG:Z:474747 -430_1779_172_F3 0 chrX_part 25672 37 49M * 0 0 CTGGAAACCATCATTCTCAGCAAACTATCGCAAGGACAAAAAACCAAAC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]][[]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -430_179_99_F3 0 chrX_part 14832 37 49M * 0 0 CCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -430_1871_988_F3 0 chrX_part 14560 37 49M * 0 0 AAGGCTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCC ]]]]]]]]]]]]]]]]]]]]]]]TO]]]]\]]][T]]]]]]]]]][]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:1T47 +430_1779_172_F3 0 chrX_part 25672 37 49M * 0 0 CTGGAAACCATCATTCTCAGCAAACTATCGCAAGGACAAAAAACCAAAC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]][[]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +430_1871_988_F3 0 chrX_part 14560 37 49M * 0 0 AAGGCTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCC ]]]]]]]]]]]]]]]]]]]]]]]TO]]]]\]]][T]]]]]]]]]][]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:1T47 430_1994_1381_F3 4 * 0 0 * * 0 0 GACTCGGTCTCAGATCCAGGAGACTAACCAACCTTGAGGGAAATTAAGAG @BBBABBAB==ABB@>A@A?A@B?A>B@=?@AAAA=AA@8;ABBBAA?@8 RG:Z:474747 -430_392_28_F3 0 chrX_part 12248 0 49M * 0 0 GGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTT ]]]]]]]]]]]]]]]]]]]]]]]]][]]]]]]\]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 XM:i:2 XO:i:0 XG:i:0 MD:Z:40C8 XA:Z:chrX_part,+26915,49M,2; -430_491_367_F3 0 chrX_part 27259 37 49M * 0 0 TCCCATTTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]ZX]]]UU][]]]]]ZHR] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -430_607_895_F3 0 chrX_part 26847 37 49M * 0 0 GGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCG *]]]]]]]]]]]]]]]]]\]]]]]]]]ZZ]]]]\]]]]]]]]]Z[]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -430_688_525_F3 16 chrX_part 27375 37 45M1D4M * 0 0 TGTTTTAGACATGAAGTCCTTGCCCATGCCTATGTCCTGAATGGTATGT WW]]]]]Z]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]]]"!] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:1 XO:i:1 XG:i:1 MD:Z:45^A4 -430_691_1191_F3 0 chrX_part 26852 0 49M * 0 0 GCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:0 X0:i:2 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+14746,49M,1; -430_693_248_F3 0 chrX_part 14829 37 49M * 0 0 CCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCAC -]]]]]]]]]]]]]]]Z]]]]]]][]]]]]]]]]]]]]]]]]]]]]]]\ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -430_78_1025_F3 0 chrX_part 14935 37 49M * 0 0 TTGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]]]]]]]]Z]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -430_821_1672_F3 4 * 0 0 * * 0 0 ATCGGCTGGCGCCAAGAATGTATTTGACGGATGGTCCATCGACGGCAACC A@?AAAAAA@=?:BA>B@>ABA?@A?B>:=@?<<:@>B=74@B;=><@65 RG:Z:474747 -430_874_1668_F3 4 * 0 0 * * 0 0 GAGAATTAAGGAAGGGAGCTAGCGTACTAAGCATACGGACGAGACACCCG A@AA>A@AB=@BAA@A@>@?B@=@?B@:A@?>:>A>=69@=@8A@@:/9? RG:Z:474747 -430_89_1672_F3 4 * 0 0 * * 0 0 GGCGGAGATGTTACCCCGCGCGAGACCCATCACACGACGTGCAATCCGCG B?B?9@B@>=A@B=>A>?A@B<@==?=?@;>7A?>53A;>32@BAB>6?; RG:Z:474747 -430_900_444_F3 0 chrX_part 26504 37 49M * 0 0 GTGATGTTCCCCTTCCTGTGTCCATGTGTTCTCATTGTTCAATTCCCAC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:11T37 -431_1029_654_F3 0 chrX_part 27939 37 49M * 0 0 GATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTATCC ]]]]]]]]]]]]]]]]]]]]VK]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:17G31 -431_274_859_F3 16 chrX_part 14611 37 49M * 0 0 TCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGA ]]]]XT]]]]]T\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -431_362_522_F3 4 * 0 0 * * 0 0 CAGCCATAACGCGAGAAAGAAAGAGTATACGATTCAAGAATTAAGAGAGG ?B@?>ABBAA>B?A?@A@A@BA=A<8@>A?2@A@>AA?A?@<@A::779> RG:Z:474747 -431_427_471_F3 0 chrX_part 28034 37 49M * 0 0 CCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]WT]]]TR]]]SU]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:14A34 -431_436_304_F3 0 chrX_part 26555 37 49M * 0 0 ATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTAC ]]]]]]]]]]]]]]]]]]]U]]]]V[]]]]]]]]X[]]]T]]]]]][]\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:11C37 431_44_655_F3 4 * 0 0 * * 0 0 GCTATTAGCCCATTGTCAAGGCGACAGACACACAACAATCCGACACCATC >-<=>@@4:=>@?A:>=9=::::=:5<:<66=7865<9;<59=13:+<;; RG:Z:474747 431_50_371_F3 4 * 0 0 * * 0 0 CGGCCCCGTCCAGAAAGAGAGCCCCGACTCCCCAGGGCTACCAGCATAGA =AA@@AAAABBBAB@=@9@A@A@A?>B<??AA>@;?@?@>B?6=B7@8A@ RG:Z:474747 -431_510_914_F3 16 chrX_part 1438 37 49M * 0 0 TCCTTCTATAGAGTCTAGTTTGTGACCATATTTCTCATTCCAGAGGAAA ]]Z]V[Z]]]]]]WY]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -431_524_1355_F3 16 chrX_part 28191 37 49M * 0 0 GCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACAATGGGG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -431_753_1184_F3 0 chrX_part 27127 37 49M * 0 0 GAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTG Z]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:23T25 -431_933_606_F3 16 chrX_part 27360 37 49M * 0 0 TGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCCTATG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -@PG ID:bwa PN:bwa VN:0.5.9-r16 -@RG ID:474747 DS:description DT:2011-03-14 LB:lib-child-1-A PI:400 PL:SOLID SM:child-1 -@SQ SN:chrX_part LN:37500 +431_274_859_F3 16 chrX_part 14611 23 49M * 0 0 TCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGA ]]]]XT]]]]]T\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,-26717,49M,2; +431_362_522_F3 4 * 0 0 * * 0 0 CAGCCATAACGCGAGAAAGAAAGAGTATACGATTCAAGAATTAAGAGAGG ?B@?>ABBAA>B?A?@A@A@BA=A<8@>A?2@A@>AA?A?@<@A::779> RG:Z:474747 +431_427_471_F3 0 chrX_part 28034 37 49M * 0 0 CCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]WT]]]TR]]]SU]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:14A34 +431_436_304_F3 0 chrX_part 26555 37 49M * 0 0 ATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTAC ]]]]]]]]]]]]]]]]]]]U]]]]V[]]]]]]]]X[]]]T]]]]]][]\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:11C37 +431_510_914_F3 16 chrX_part 1438 37 49M * 0 0 TCCTTCTATAGAGTCTAGTTTGTGACCATATTTCTCATTCCAGAGGAAA ]]Z]V[Z]]]]]]WY]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +431_524_1355_F3 16 chrX_part 28191 37 49M * 0 0 GCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACAATGGGG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +431_753_1184_F3 0 chrX_part 27127 37 49M * 0 0 GAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTG Z]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:23T25 +431_933_606_F3 16 chrX_part 27360 37 49M * 0 0 TGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCCTATG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +431_1029_654_F3 0 chrX_part 27939 37 49M * 0 0 GATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTATCC ]]]]]]]]]]]]]]]]]]]]VK]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:17G31 diff -r 3840c86e34b77bbd0d7c2da0c4ff3e5004dc0fe4 -r 869163ea42946aa5c394d79a3366898cf59beeeb test-data/bwa_wrapper_out7.sam --- a/test-data/bwa_wrapper_out7.sam +++ b/test-data/bwa_wrapper_out7.sam @@ -1,422 +1,422 @@ +@SQ SN:chrM LN:16660 +@PG ID:bwa PN:bwa VN:0.5.9-r16 +853_7_53 77 * 0 0 * * 0 0 NNAGNCCGANNGGNGNNGTANGGNTNNATTGCGNCNCNNNNGGGCNNNCG !!14!3.15!!47!4!!8+1!$9!(!!,..1)&!3!(!!!!1/9&!!!,3 +853_7_53 141 * 0 0 * * 0 0 NNCNNNCGNTNAGTNGGNGGNGNGNNGGNNGNNNGGGGNGGGNGNGNGGN !!0!!!10!)!)0)!,-!##!%!%!!##!!'!!!%+&)!%$/!)!$!/(! +853_7_78 77 * 0 0 * * 0 0 NNCTNGGGGNNGGNGNNGGGNGGNGNNGGGGCGNGNGNNNNGGGGNNNGG !!##!###$!!##!&!!#$&!$&!&!!%&)'#'!$!#!!!!&)*(!!!&* +853_7_78 141 * 0 0 * * 0 0 NNGNNNAGNGNGTGNGGNCCNGNGNNCGNNCNNNGGGGNGGGNGNTNGGN !!#!!!5,!$!5&+!#8!)#!5!%!!3%!!'!!!$$8+!&)%!)!(!*#! +853_7_88 77 * 0 0 * * 0 0 NNGTNGGGCNNCTNGNNATTNTANCNNACAGGANCNGNNNNGGGGNNNGG !!61!5551!!13!4!!.,)!/,!3!!.)/17+!&!5!!!!-'0.!!!,5 +853_7_88 141 * 0 0 * * 0 0 NNTNNNGGNGNATGNCTNGGNGNCNNGTNNANNNGCTANCTGNCNGNTAN !!1!!!42!5!,25!24!77!4!3!!81!!,!!!5147!)/6!,!,!1&! +853_7_132 77 * 0 0 * * 0 0 NNGGNGATGNNTGNGNNGGGNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG !!$(!,#&#!!&#!#!!#($!%$!#!!#&%#$(!#!#!!!!)(*+!!!,2 +853_7_132 141 * 0 0 * * 0 0 NNGNNNGCNGNGAANGCNTANCNCNNTANNANNNGCCGNGAGNGNANGGN !!&!!!5#!)!)&+!2&!',!&!'!!1)!!1!!!4()$!/&,!'!'!0$! +853_7_141 77 * 0 0 * * 0 0 NNGGNGCCGNNCANGNNGGCNAGNCNNGGACCGNANGNNNNAGGGNNNGG !!54!9518!!1&!5!!/31!)0!6!!)533/:!5!6!!!!)/<:!!!,7 +853_7_141 141 * 0 0 * * 0 0 NNGNNNCTNCNCCGNGGNAANANANNAGNNGNNNGGGGNGAANGNGNGGN !!,!!!),!5!3)+!//!),!3!9!!&/!!+!!!**#)!.)(!(!(!43! +853_7_146 77 * 0 0 * * 0 0 NNCGNCACCNNGCNGNNGCTNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG !!10!/240!!0)!2!!#&'!'5!(!!(.-*$3!*!4!!!!+#(.!!!.( +853_7_146 141 * 0 0 * * 0 0 NNCNNNCGNGNGCGNGANCCNGNCNNCGNNGNNNCTCCNGGTNCNTNGCN !!1!!!33!4!#15!7(!51!1!3!!.5!!5!!!/)/,!&-/!,!.!4,! +853_7_269 77 * 0 0 * * 0 0 NNCGNGGGGNNGGNGNNGGGNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG !!%&!('#%!!#*!#!!/##!&)!$!!'$',%,!%!2!!!!3,,*!!!,2 +853_7_269 141 * 0 0 * * 0 0 NNCNNNGCNGNGCGNAGNACNGNCNNGCNNTNNNGGCANCCTNGNTNTGN !!3!!!/.!+!*4,!42!)8!2!3!!62!!0!!!84;)!)7.!5!/!&%! +853_7_321 77 * 0 0 * * 0 0 NNGANGTGGNNGCNTNNGGGNCGNCNNCGAACGNTNANNNNGAAANNNGG !!+$!+21(!!*-!.!!)#1!8/!9!!6,3+%6!'!,!!!!2&6,!!!&2 +853_7_321 141 * 0 0 * * 0 0 NNCNNNACNGNGAGNCANCCNANGNNGGNNGNNNATTGNCCCNGNANGGN !!$!!!&'!.!*##!6$!#1!+!#!!.+!!)!!!36(#!*5'!#!4!+(! +853_7_386 77 * 0 0 * * 0 0 NNCGNGTAGNNGANGNNGTCNCGNANNGAAGTGNTNGNNNNAAAGNNNGG !!31!:7-%!!:,!-!!21,!77!)!!227:9:!2!;!!!!)',%!!!86 +853_7_386 141 * 0 0 * * 0 0 NNGNNNTCNGNGCCNCCNTCNGNANNTCNNANNNGATANTCGNCNANGGN !!;!!!86!=!;9=!%5!58!<!2!!62!!&!!!&3:&!//8!*!7!5*! +853_7_405 77 * 0 0 * * 0 0 NNGCNAGGCNNTCNGNNAAANGTNGNNAGAAGGNANGNNNNATCTNNNCG !!<8!8;==!!;>!:!!7:7!7;!8!!7:>48=!2!=!!!!536*!!!;: +853_7_405 141 * 0 0 * * 0 0 NNGNNNAANANAAGNTCNGTNANGNNTGNNTNNNCATGNCGANGNCNGGN !!=!!!;:!>!<8=!9<!:<!=!>!!;8!!;!!!;//1!&(&!/!'!*-! +853_7_411 77 * 0 0 * * 0 0 NNCANGAAANNTTNGNNAGGNAGNANNGAAGGGNGNANNNNAAAANNNAA !!,/!13;,!!&,!+!!2/%!*1!$!!%*)+#,!,!&!!!!'-'&!!!++ +853_7_411 141 * 0 0 * * 0 0 NNCNNNAANCNAAGNAGNCGNCNGNNGGNNGNNNCAGANTCGNGNANGCN !!$!!!-#!#!*#+!,&!2*!#!#!!%'!!)!!!'$)$!/-#!#!'!,+! +853_7_445 77 * 0 0 * * 0 0 NNTANTGCANNACNCNNCGANCCNTNNTACGGGNCNGNNNNTGGGNNNGG !!&'!*+'#!!'%!&!!,%#!)%!(!!'##$&'!#!$!!!!$$#,!!!#$ +853_7_445 141 * 0 0 * * 0 0 NNGNNNTTNANGTTNATNTCNANCNNCTNNGNNNAAGANGGGNGNGNGGN !!&!!!0%!#!,&'!,'!$$!&!,!!&)!!'!!!..*&!#,7!1!.!10! +853_7_469 77 * 0 0 * * 0 0 NNGGNACAGNNGANTNNGAANGCNANNAAGGAGNGNGNNNNAGATNNNAG !!##!*($&!!##!#!!%))!#1!%!!(,##$.!#!(!!!!##'#!!!&$ +853_7_469 141 * 0 0 * * 0 0 NNCNNNCANTNTCTNTTNTTNANTNNAGNNCNNNGTTTNGTANGNTNTGN !!#!!!%%!$!))+!$,!*%!.!(!!.#!!#!!!#&##!##&!#!#!##! +853_33_1583 77 * 0 0 * * 0 0 TATGTATTTCGGTACCGCACAGANCACTCCAACCCGATAGCGTCAAGTCC /&2%,)+,+:&#:;,5*)8/%19!,%*1/%;#<952%:27#%%&4.,#-1 +853_33_1583 141 * 0 0 * * 0 0 CCCGCGCTCCCGATAATATAATCACCGAAACACGAAGACCAACAGGCCCA ),+&#,)',$##2$),%2'+#$)2),#$(+#+##&*%(-%1%#(##$$2, +853_33_1649 117 chrM 7331 0 * = 7331 0 TCACCTAATCTGCATGCAGCTCTGTCNTCATGTAGGAGTTAGAACGAAGC %1.)#$$1%%$)#)$&);=1968:42!:8<:78;888<6688=<<9<:9< +853_33_1649 153 chrM 7331 37 49M = 7331 0 TCACAGTCAAAACAATAGGCCACCAATGATACTGAAGTTACGAGTATAC XNT[[[YTQXUVKHX[]ZMOZ]SV]X]\Y[\ZVRTZ]][Y]]VNQUWSU XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:37C11 +853_34_1182 77 * 0 0 * * 0 0 GTTAAGGGTGTTAGGGAACCCTANAAAGCCCGGGTTTCGTGGGGGCGGGC ;7;5*982;:/;,46::69<4<(!4295.6144&::<4*.-+%$#.#,(# +853_34_1182 141 * 0 0 * * 0 0 GGGAACATTATACGGCTTTCGCCCCCTAGACCGCACTGTGTTGGGCCGTT >>>:9<<>><;58987;::9718859:2;75'3%(720&14%6(,51-&& +853_34_1358 117 chrM 7792 0 * = 7792 0 CGCCTCGAATATTGCCCTCAGATCAANACTGTTGACCCTCGGGCCAGGCC 9/8<9;6:<8=,>=<<;=<<9:><>:!9;@=:>?<=>><=>>?<=;??<< +853_34_1358 153 chrM 7792 37 49M = 7792 0 CTCCCTAGTGATATGCCACAGTTGGATACATCAACATGATTTATTAATA MV]YU]YXXTZ]ZY\]]]][]]]]]]]]][[]]][WX][Z]]]]]][[] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_35_596 73 chrM 477 25 49M = 477 0 CGATAGCTAAGACCCAAACTGGAATTAGATACCCCACTATGCTTAGCCC !SSNPYYYUQPS\VSSRPPZ[Z!!NXX\VXLL]]XUMKXYRTRKLV\Y! XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:22G26 +853_35_596 133 chrM 477 0 * = 477 0 GGCTCCTATTTTATTACGTGTCCTTCTCAAACTGACAGCGCAATGCTAAG >978>8=9;>;:2>;;85=3;::=;::7:8:68)<5;859>?<>:<6<58 +853_35_669 77 * 0 0 * * 0 0 TTGTGCTGTCACGGCAAGGCGGGNGAGTTGGTGCGGCTACTCTCATCTGG #4(,,&5,'-2(&5'10&)&-&3!,)+.*9&););:,8)7&3<&,/1:)& +853_35_669 141 * 0 0 * * 0 0 TTCTTATAAAACCGCTTACCCCCTAGGTCCGAACATCTTGCAGGGTCTTG ,)&#<&38':&)-2/*4-'*+,5:0(3(+.+&,)9,&%1%*'(+.+-&&' +853_47_795 73 chrM 649 25 49M = 649 0 CCCCGATAAACCCCACCATCCCTTGCTAATTCAGCCTATATACCGCCAT ]]\]]]]]X]]YY]]KL]]]NO][X07]]VIRZ]Z"0]]]]RKR]KF\V XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 +853_47_795 133 chrM 649 0 * = 649 0 CGGAAGGAGCGAATACTGAACCAACACAGGTTAACTAGGAAGAAAGTGGA >?@;;?>=A@A9:>;:>=<;=>::88<;=8=<:95>08=5.(364,)1,) +853_47_831 77 * 0 0 * * 0 0 TGGATACACGTAACAGAGGACCGGGCAGACTACTCGGGGGCCGTCGGTGG .)/'0(,&#*#'#)#(#(#*(#'%%1.3#$-2%$&/#$(#'%'%(##%+, +853_47_831 141 * 0 0 * * 0 0 TAAAATCTCGGATGGTTGCCTTGAACAAAAAGACAGCCCCGTCAAGGGAA 5A,&5,))%(()&,13(.9<2++8,>99*(%184,=/&5+)6/)0.&)64 +853_56_1228 89 chrM 8643 37 49M = 8643 0 TAATGACCCACCAAACCCACGCCTACCACATAGTAAACCCCAGCCCATG Y[]MKVY]]]]QT]]]YY]]]]Y]PN]]]]X]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:22T26 +853_56_1228 181 chrM 8643 0 * = 8643 0 CCCTGCGCCGAGCCGTCCCCCCCCCGACTGAACTCAGCAGATACTCGCAG (-5&(2)5(/&-:%&4&9%&-.1266:=:?<<?>>;??<:==<:?=?>;@ +853_56_1324 77 * 0 0 * * 0 0 GGGCTTTAACGCGTCGGCACGAGGTAAGTGGAGTGGCGATGGCACGATTC 5,(,)5+)57+94*,*3-#*4,2&2$2'(,2)-)22/)$23/1*)24'%$ +853_56_1324 141 * 0 0 * * 0 0 ACCATGTATGGAAAAAAAGAGTAGAGGAGGGAAACAATGAAAAACGGACC /6+58//.61366638/)&988).5::15578427=88&0:>;59:(6;< +853_82_2023 89 chrM 1195 23 49M = 1195 0 AGATAGAAATTTTAACTTGGCGCTATAGAGAAAGTACCGTAAGGGAACG XX]]VQXWSNT]]]WV]\Y]]]]]]]]]]]]W\]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrM,-1196,1S48M,3; +853_82_2023 181 chrM 1195 0 * = 1195 0 CTAGCTCTGTACGCGGCTTATGCGTCTCTTAGGCTCCCTAATTCTAATAC 75:5956654=71?9858;96;9>;;:?8:<=8=45762<?57<<>79;9 +853_83_197 77 * 0 0 * * 0 0 GGCAGATGATATGGACTGAGTGGGGGGGGAGGGGGGGGGGGGGGGGGGGG 8;95;6:96698;6;89:3=%(-*$&(+$&#%.''+(.-%-/5.*.*4/5 +853_83_197 141 * 0 0 * * 0 0 CCGTCTCCCGCGCCGCAGAGACACTACTTCCTCGCCGCGGTGCGCCGGGC /9;58179583997;5591<26;797=55:995$)&$'#-$(&&'(*(%& +853_112_119 77 * 0 0 * * 0 0 CCTAGGATAATACGCGGACAGGGGAGCTCCGGGGGGAGGGGACGGGGCGG 7)&8327,(41&&),%1/)%+242(1,)')&15,)&05#$50,$$87&.$ +853_112_119 141 * 0 0 * * 0 0 TCCCGGGACAACGGAATTAACAACCCCCGGGTGGAATCGGGTGGGAGGCG ))&)994&,/1(+-+.-('(02)145,.&42,#&).,&(-0.%,',%:(0 +853_112_253 69 chrM 1041 0 * = 1041 0 GAACGCTTATGGGGTCCGCTAGCTAACGCCGCCTGGCCAATAACTATAGT ;9;97857&:;6;&983;4=83/,::2=,8;7(&<;/8+275(/9-1&(; +853_112_253 137 chrM 1041 37 49M = 1041 0 ATAACCAAAGTGTAGCTTAAACAAAGCATCCAGCTTACACCTAGAAGAT WTVVUWTQYWRMT][YTWNITY]ZSW]]]RU\Z\]]]YTWVSTWX\ZM> XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_148_1347 73 chrM 14085 37 49M = 14085 0 ACTCAAAATAAACACAATATATGTCATCATTATTCCCACGTGGAATCTA #$]]]]]]]]]]]]]Z[]]]][V\\[]U\[Z]KQ]YOQW]]QUYWWZTQ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_148_1347 133 chrM 14085 0 * = 14085 0 TAAGGCCCGTGCCGGTCCGTCCAATGATATTGGAGGAGTTCCGGAGCAAG A=;@>>?=@@A@?A@>@A@=9?9<A@;9>>>>>7;=8<=;8;?;18?62= +853_148_1509 77 * 0 0 * * 0 0 GCTGGGTGAAAAGGCCCCGGCTTCACAGAATGTAATTTCTAATAGTCTTT -'-:+&1.,)&&=(=)?7=<=4&,>:(;,&<))))8)+(,'&(4&,(,3) +853_148_1509 141 * 0 0 * * 0 0 TGAATGTAAATTAAACGGGAGGAAAAATCTCCCCACAATTGAGGCCTTCC ./<&1=35>,/3(6,,1<3*)7,53)69<&(A<8+(;91).8&+7(:&<7 +853_157_314 77 * 0 0 * * 0 0 CTCGCCTGGAATTTAGCCATGGCTATGTTCTAGGTGCTTTGTTAGTTGCG 79();(1<))&2(5+&8&+.9-'198,',))&&7&:*,4)(6&2&/:&77 +853_157_314 141 * 0 0 * * 0 0 GATAGCAAAAAAAGGGGCCGAGCGCAAAAGCCGACCTGAGCACAGACGAA 9;:5461242#)#*1####('$$$##'#%#'$$%###/$%($#'#$$#+# +853_157_582 117 chrM 893 0 * = 893 0 ATTTTGATATTGCCTAAGCCAGGAGGATTATGGGGTACCTGATGTTGTTG 2&==93398<:46<@<:?:==6>:<<<=?=>;;<;A;;:>;;><::??:= +853_157_582 153 chrM 893 23 49M = 893 0 GCTTAATTGAATCAGGCCATGAAGCGCGCACACACCGCCCGTCACCCTC O/3]Y[12]PSUUY\]XXYZ\VY]]]]]]]]]]]][]]]]]]]]]]]\\ XT:A:U CM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrM,-895,2S47M,3; +853_158_402 77 * 0 0 * * 0 0 GGTTGTTAAACCGTCCCGGGCGTTATCCACGTGTGATACCCGCGCATGTG 711&$(-)##.,&((&(4('83><-:94,'.;2&*:<0%&7,3#+02#(# +853_158_402 141 * 0 0 * * 0 0 TCACAGACCCGAGGAAGCTTCGTATATTTGCCACTAAGGGCGTCGGGGGA 5;&35,<55<8<6;<3646:618477::95<92=752071+2339-.#11 +853_158_569 69 chrM 6195 0 * = 6195 0 TTCGTAATTATATTTGTCGGGCATTATGAGTACGGAGGTTATTATATAGG 8>34:8.56,9/7<=-80.562,994:)3,<#%85(,#7&%,'#3#,#%& +853_158_569 137 chrM 6195 25 49M = 6195 0 ATCCATTGGCTTTCTAGGCTTCATCGTATGAGCTCACCACATGTTTACA $]\YYYQM\]\WX]\\MN][YQS[\WS\YV]]VV]]MFY\]XPSV]SGL XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:30G18 +853_216_501 77 * 0 0 * * 0 0 CCCTGGCCGGTCGGGTGCGTCACGCGCCTGGCGGAGCTCCTAGCCACGCC />61=+11:/5/+/(&/1'%#:3&;&93(';0$4&*9,&/+))2')65.& +853_216_501 141 * 0 0 * * 0 0 CTTTTAATGGGTCCCTCTCTTACAAGGCTCTGTTAATTTTTCCTTTCGAA 85<85,7=47;:627;<6<4<::445934*:5<2)$9&-$273#/#6-.* +853_216_648 117 chrM 1235 0 * = 1235 0 CGAGGCAGCCCATTGAGTTTGGTCCCCCTTAGTTACAGGATTTCCAGCCG +&'%(14'2,09:7(776;53=99/58>75;88784;/:8)884;7/;6/ +853_216_648 153 chrM 1235 37 49M = 1235 0 AAGGGAACGATGAAAGATGTATTAAAAGTACTAAACAGCAAAGCTTACC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]SU]]]YY]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:19C29 +853_218_1907 73 chrM 1146 37 49M = 1146 0 TACCCTTAGTCACTTAACTAAAACATTCACCAAACCATTAAAGTATAGG YQOTRVYOS[\Z[XX]\YOS]XW]]\Z[X\ZUZWZ\XVVZQPMKWTUJ> XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_218_1907 133 chrM 1146 0 * = 1146 0 GAATGGCTTGACAAAGGGAGAAACGCATATCCTGTGATGTTATTTAAGAG 5).5<9?642>9+;9<;;:28=4886909479&7,3;&#9+:,6'5,(&/ +853_219_184 77 * 0 0 * * 0 0 GCATTTGCGACCATTTTGGGGTTGGTGGGGTGGGTGGCCGGTGGGTTGGG /&3&,)/,$)/&)2&#%(:/+#,*&$+$$(&1)/&+1##'&'#-,)&'%- +853_219_184 141 * 0 0 * * 0 0 CAGTAGTTGCATGAGTCATGAGGTTGGGTTGTTGGCAGCTGTTGTCGGCT '*)%%,,##3,1+,,#'&)#+#/-),%(&+$)%#%$&(&/#&(#%#'$%$ +853_233_615 77 * 0 0 * * 0 0 TTATGGATTAAATTTTAGCTAATTTGGCCCCTATGGATAAGGAATCCCTA (7.1:154753447,222383647814041,3+,4.-/%+21((2)2'7) +853_233_615 141 * 0 0 * * 0 0 GCCTTAAATCGATATAGTCGCGGGCCCCAACCGGGCCGAGTACACTGGGC ;@),<%8)(&<(0)<&<)&53.*%/,5,6*/6;.)+>,%.,7,#,,*$%$ +853_233_834 69 chrM 8993 0 * = 8993 0 GGGAGTTCTAGTGGAGAGATTATTCGCCGCCAGCTGCGTTGAGAGATGAA =<<=;><:6:;<<3>=:=8>><<8;<=63;>99099&%,##&'2##%/$% +853_233_834 137 chrM 8993 37 49M = 8993 0 CCACCCACAGGTATCCACCCCTTAAACCCCCTAGAAGTCCCCTTACTCA ]]]]]]]]]]]]]]]]]]]]]]\\]]]]]]]]]OQ]]VY]]SOVQ\]YS XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_244_474 77 * 0 0 * * 0 0 GATTGAGAAGGCTGCAAACGGCGAACGACCGGGCGGCCTAAAACCACGGA )15$&/&*,&,,(&&0.,&,07:)/1/4&))96&)'/&''.(+&1'&)'' +853_244_474 141 * 0 0 * * 0 0 CGGACAGAACGAAAACTCCTAACAACAGAGCTGAGCAAACCAATCCAGCC *$(5.+###%$$2*+'#$('/(#*$$$$0%'$$3',$(*#&'4(%$#/$$ +853_244_781 117 chrM 652 0 * = 652 0 GCAGCCACGAATGTCAAAATCTGGACCACTATACGGTGTCATAAATTCTT &24)57:,,<=892<?=>;9>989@=;>;:?7><<>;=7=86>>;:9><8 +853_244_781 153 chrM 652 37 49M = 652 0 CGATAAACCCCACCATCCCTTGCTAATTCAGCCTATATACCGCCATCTT ZOE[\XROW[]ZQJW]I?T]]][]]]]Z]]][Y]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_255_146 77 * 0 0 * * 0 0 CCTATGTCCCCTGACGGCACGCCGGGTCACCGAGCCGGGCCGCGCCCGCC 5.)8&)'++7:',%'&&,(1)1/8'('%1)20#%,4-$.&$''(1(0(/7 +853_255_146 141 * 0 0 * * 0 0 GGGAAGAGCCAGGGAGGACTGGGGCTGGAGCAAAAGAGGCGAGGGGGGCG #$##$%###&##'#&##$###&#&$######$####%%$$/$'%$'#$$# +853_255_403 117 chrM 13900 0 * = 13900 0 ATCCTCAGCACATAAGTGCGTGATTACCGATTGTATCATCGCTCGGTTGT 130>7&9+9:-83?<09=>;85?>=78;<<=99;>)87;>;9;=>?<:8< +853_255_403 153 chrM 13900 37 49M = 13900 0 GTTGTATAACCAAAAACAACCAACATTCCTCCCAAATAAATTAAAAACA 7FFGW]]]RIS\]]YT\]SMKT\TW[\\]Z[]]]]]]][[]]YZY]]Y\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:41C7 +853_256_428 77 * 0 0 * * 0 0 TAATTCAAGCAGATAAAAGAGTGTGCGCCCACCCTCCAAGGAAATAGAAA 2=<66<=>6::3<,8;>:3<3825,:1:98897,057::24<986:+,:: +853_256_428 141 * 0 0 * * 0 0 ACGAAGCGGTGTACCTGGCCCTACGCGGAAAGGGGGAAACCTTCCCAAAT @?8<A:A969=<:71?;;<5==>81><1<&??:264@>>/=<-819><() +853_256_834 117 chrM 9813 0 * = 9813 0 GCCCTCTGGCAAACCTACGGTAAGTTTGCCATGGAATCTTTGGCGACATT ######$$##############$#&####$&$##&##########)#&%' +853_256_834 153 chrM 9813 37 49M = 9813 0 TGAACCCAAAAAGGGCTAGAATGAACTGAGTATGGTAATTAGTTTAAAC DL]TAFU]\TDH]]]WZ]\NU\VZVU\]]]Z]]Z\\Z]]]]WZ]]]WWX XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:14A34 +853_266_697 89 chrM 1002 37 49M = 1002 0 AAGTCGTAACAAGGTAAGTATACCGGAAGGTGTACTTGGATAACCAAAG ]]]SQVY]]\]Y[ZY][]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]# XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_266_697 181 chrM 1002 0 * = 1002 0 CAAGTCCACTTATATATGCGCATCGGGTTTTTGGTGGAAGGTTGTCATGT ::<;9796:::;9;;;<4>=2=;<;?=>?=;==?><6;:<:<>=@>;<=? +853_266_1092 77 * 0 0 * * 0 0 GAGCCGGAACGAGACAACCCGTTCTTAACATCCACCACGCGTGGGCGACG ;)2))/8%'10:712<67<3(39</68/5)6&')/170&49)6)//,)&& +853_266_1092 141 * 0 0 * * 0 0 GGCGCGGATTATTGTCTTAGCTTTGCTACCGTTATATGCGCTTGTCTTGT ,318925,37;9,999<52622989/:7220#3$247,',*1'##,1,#5 +853_279_1056 77 * 0 0 * * 0 0 TGTGCTCTTCCGTCATAAGAGAACCTTAAGCTATCACGGACACAGCGCCG :;76;:=;:<7::;<<<3<76;:<9=<5;87=3<=5@3<7388771:;5< +853_279_1056 141 * 0 0 * * 0 0 TGGAGGGTACGATTAGAAGAGGAGGCGGTACAAATAGACAATTCCTCACT =<;<<=;><:>;=<<=>=:<<>=;<;=;<==8<87<7@8=<9<9;:1:3: +853_279_1330 117 chrM 8561 0 * = 8561 0 CTTTTTCCTTCCCTTGCTTCGGTGAGCATGAGTTGCCTTCCGTTTTTTAT 7%,117%%154#2639#1#,5'+)23%($$1#$#1<$&>-<-'9)4).<+ +853_279_1330 153 chrM 8561 37 49M = 8561 0 AACTATCCTCGAATTCGCAGTAGCCATAATCCAAGCCTACGTATTCACT JI[VXUU]]][\]]]WW]]]]\]]]]]]]]V]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:24T24 +853_292_158 77 * 0 0 * * 0 0 AATGTGCGTTTAAATATTCGGTCTTGGATGCTGATCAGCTAAAACGTATG ;=;;9;>>89=><94<;>9:;:896;;<8;3<<177=:5<6=:73<:9'9 +853_292_158 141 * 0 0 * * 0 0 AACTTTTCTGGCATTTGAGCGCGTTTTGGAACTGACGAACAGATGCTCCT ===9<<;<=<<>:<:=<>::7=9<=:;9:>;;98=58>;>4=@;:,;=1= +853_292_700 117 chrM 2055 0 * = 2055 0 CCCCACCACACCAGCCCCCCAAGCTTATACCCCGTACTCTCCTCATTACC 5.&/,#/++%):4'*/66:/.<6:82<6715=74+&>;<8:;>;=9<;9= +853_292_700 153 chrM 2055 25 49M = 2055 0 CACTTGTTCTCTAAATAGGGACTTGTATGAATGGCCACACGAGGGTTTT U[XVKS\MRZS\]ZTXZX]WT[[]]]ZUUT]]]]WVZ]]]]]]\ZUU\& XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:9C39 +853_365_890 77 * 0 0 * * 0 0 TGTGGGGGGGGAAGGGCGTCCGGCTAACGTCTCGGCGGGTGCGGGGGGGG <:7:=<;;;<9==><<;9<>:;>>;:;7<;<68(-#6+1&5,(4'2'.*2 +853_365_890 141 * 0 0 * * 0 0 AGAAGTCCGGGCGTAGTGTATCCGAGGGGCAAAAACTCTAACAACGGACT =9?=>7:9;A=9==??:<8?<=9@6<:>>8<?=>:=6:=<?8;<398:8) +853_365_1447 117 chrM 5643 0 * = 5643 0 ACCATTGGATTAGGCAGCCGTGGGGCATACTCATACGGTCTGACAACCAT $###$#$#(##&$&#8$277:3079<60;993;8;5+97=7)9:;:(7<6 +853_365_1447 153 chrM 5643 20 49M = 5643 0 TCCCCGAATAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTA NJUSYMK[RT[XXTY\ZZOT]]]XX\Z[XY]]]]]]]]]]]]]]]\]][ XT:A:U CM:i:1 SM:i:20 AM:i:0 X0:i:1 X1:i:2 XM:i:2 XO:i:0 XG:i:0 MD:Z:0C48 XA:Z:chrM,-5642,1M1D48M,2;chrM,-5644,1S48M,3; +853_368_1718 73 chrM 1149 37 49M = 1149 0 CCTTAGTCACTTAACTAAAACATTCACCAAACCATTAAAGTATAGGAGA (]Z\]SR]]]\Z]]]]]]]]]]]]]]][]]]]]]]V]]]WW]]]SO[[X XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_368_1718 133 chrM 1149 0 * = 1149 0 CTCCCCTCTCAGCTTGATTCCAAACGCCGGGATCTAAGGGTAATGTTCCG ;;A>A>?A;@@<><9A;6:?A:=1><<A@6=5515A<>8397:@1<6<3: +853_369_74 77 * 0 0 * * 0 0 AGCCACGGATCAGAGGGGGAACGATGGTATAGGAAGGGATAAGTCGGGGA 7:9875:8:7<69;78.$2/9&)6%0-$5)96&879'$8,&(/))6*2&( +853_369_74 141 * 0 0 * * 0 0 GGGTTCAAGCATGGGAAGTGGACCACAGCTCCCGACGGTCCACACCATCA =9756::884:54:791:47358965758589965&:94,&969;(5143 +853_375_367 77 * 0 0 * * 0 0 CCGATTGTCTTTCTGAGCGCACCGAATCAAGGTATCTACTAGCATAGCAT '+);,18&&&''),2&))4,%/1&5.1+-'/,'-1()))&'*)'+)&/&) +853_375_367 141 * 0 0 * * 0 0 GTTTTTTGGCGCGAGGTTTGCGCAGAAGGGCAAATTCCGGCAGCGTCGCG 5&')&(9<1,=?>:+,)6)&7,&(05/)1,',(0'&),&(6/7,,5,,44 +853_375_856 69 chrM 883 0 * = 883 0 GTTTACTTGAGTACATCCTCAAGACTGTCTTATGCCGAGGCTGCCTTTGA 8<;;>??83=>;63:@:?9=@<=>8@:?5?>8=1?;98;9<>4&40&2(% +853_375_856 137 chrM 883 37 49M = 883 0 AGAATAGAGAGCTTAATTGAATCAGGCCATGAAGCGCGCACACACCGCC ]]]]]]]]]]]Z]]]]]]]]]]]]]]]]]ZTV]]]]]]]\[]]]][]UQ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_381_1334 89 chrM 556 37 49M = 556 0 ATTCGCCAGAGTACTACTAGCAACAGCCTAAAACTCAAAGGACTTGGCG WLNHN\]]]]]]]]]]]]]]OJ]]]]]]]]]]]]]]]]\]]Z]]]]]]' XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_381_1334 181 chrM 556 0 * = 556 0 CCCCATCATACCACATAACACCACCAAGGCTCAAGGTGTCTTAATACCCA *%-#&2+,%&#2'%#,&%&.%7;';=?>%=<?>68:?@,;=?>%)4@>=@ +853_381_1648 77 * 0 0 * * 0 0 TTGCAGACTAGTTTCCAGGTATATTTTTCAAAGCCTTATTTTCTTTTTTT 986+0<95:8;(>5<<)58?,4)8;<5&,9/),()35)-3&7(&832$&/ +853_381_1648 141 * 0 0 * * 0 0 AGAAACGATCACAAATAACCCAAGTCTCGCCAAGAGAGCTTGATCCGAGA 8:9:;<;::::;65&:178(:8:517:35$3385)958.$<578%7:7.) +853_383_962 89 chrM 865 25 49M = 865 0 GGATTTAGTAGTAAATTAAGAATAGAGAGCTTAATTGAATCAGGCCATG O\]SGKS[[MJ]]Z10[]WHG]]WQT]]]HI\\YBDWTW]XU\]]VY]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:8C40 +853_383_962 181 chrM 865 0 * = 865 0 GGCCAATTATTGCAATGGTATGTTGTGGGGCTGGGGAGGTTGAATCTCTG 5*;3<8)659?)@>?:(99>:7==<?5?;A=:<2>A<;:==<=:>;9??@ +853_383_1666 77 * 0 0 * * 0 0 AGCGTCTTACAGACCCAACTTGAAGCTTGCAGGAAGGGGCAAACCAAACA ,,('6:.6-&7,(=15&%&<&&1(/16',.(1&&8($$&&+&)76,5815 +853_383_1666 141 * 0 0 * * 0 0 AACCACTGAGTACGTAGGCGGTGCAACCGAACCCCGAGTATTACCTACTG 18$+&,#./,8#8('./99#4(58);.22,;,2,%6,%)(,.,*957)(' +853_389_1983 77 * 0 0 * * 0 0 TACCGTCTTTCGATTGACCGGTCGGTCGGGGGCCGGGTGTCCGGTTCCGG ,&9):88.&'&&/.&4&%4(6#$4531,)66,.2-51#'2/&'5845,8. +853_389_1983 141 * 0 0 * * 0 0 TGGAGCTACACCATCCCCTTAGGAGGGGGAAAACGTGGGGTGACGTGGCG 715;6741498/6459/6448/6573'569<98845/6:9$),4%.560( +853_390_660 69 chrM 1251 0 * = 1251 0 CTAAGGCAACGTATTGGTCGCCTTATGGTAATGGTACGTATAATTAGGCT >8A==;<<<>;;A98<;:<=>;9;=;;;;>;8<;;@5;:81=:894;:), +853_390_660 137 chrM 1251 37 4M1D45M = 1251 0 GTGCTTAAAAGTACTAAACAGCAAAGCTTACCCCTTTTACCTTTTGCAT ]]]!%\W]]Z]]]]]YW][ZY]]]]WU\]]]\]Y\]]\V]23]]]HFRS XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:1 XG:i:1 MD:Z:0A3^A45 +853_392_1916 77 * 0 0 * * 0 0 GCGCCGGGGTACAGTGCAAGCGCGAACGAGACGAATTTGGGGAGGGCACT :<=<<<>>;>9<28A;<:*;:=95889<.:8;>34;6)%+6;05&::1+1 +853_392_1916 141 * 0 0 * * 0 0 GATGCATATCCTGCAAAGCACCAAGGATGGAAATTTGCGCTAAATAAGCC @;@A?>A;?@A>@@<=9A>??=<;A@9>A?=:;?=>;?<<?;<962&6): +853_393_183 69 chrM 660 0 * = 660 0 TCAGGATGGCCGTAATAATGGTGGCGTACACGCGCAAATTCCTTATGCGG =>;<<=*;4-;+9':>$427:&972<)71=;*793<1<1:;:7/9=)7/; +853_393_183 137 chrM 660 37 49M = 660 0 CCCACCATCCCTTGCTAATTCAGCCTATATACCGCCATCTTCAGCAAAC ]ZZ]\[]]]]]]]YZ][[[]]Y]]]]]]]]][]XV]]SGT\ULSXY]Z[ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_397_1746 89 chrM 9541 25 49M = 9541 0 CGCTACTCGTACTCATCGCATTCTGATTACCACAACTAAACATCTATGC DF8=*%8:ORJJNQOMD>LLOWUYMGGIQFNYV]SKPU]]VJGMFFVPJ XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:26C22 +853_397_1746 181 chrM 9541 0 * = 9541 0 GTCGTATTCCTTCCTTGCAGATATGTCATACATCCCTGCAATCAGACGAG ,5,+2.4.7/><1:777)5;78/97?:0<582/9<880;8;98;:7987? +853_398_593 77 * 0 0 * * 0 0 AATTTAACGTATGCGGTTTTCTCTTCTCAATCCTCACACCGGTAAGAACA (=714-?,:<,91)717878<7/9396=51,<<=,)/;8=5,:/8;7813 +853_398_593 141 * 0 0 * * 0 0 GACCCGTGGGCTCCACTGGTCAACGCCGTCCTATATGGCGGACTAGTCCT (,1&31,+//,&1?0,)(>91),,7(/0(1(3=/1>/)&83:5336:3-3 +853_423_1430 73 chrM 8093 37 49M = 8093 0 CTCAATCCAACAATGGCTAGTCCAACTTACATCAAAACAAATAATAGCT W]]]]]]]]]]]]]]]]]][\]]]]]]]]\Z]]]YW]]TKTO>=D?KXK XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:6T42 +853_423_1430 133 chrM 8093 0 * = 8093 0 CGGAGAACCCACCCGAGAGACATAGGGGCGAGATTCACCTGCTTTTTAGG >>5:<8<A<=:<=@<=5?:/=:8;7:=9<<87:<897:7891.=%;8/7; +853_424_115 77 * 0 0 * * 0 0 CCCGATACAGACCATGCGAATCGAGACGGGCTGTCTCCAGTCCAACCCGG 6>8:8<;>7?;;<,7>>;;8:<=16;:789549$%&6)'040$('%0''2 +853_424_115 141 * 0 0 * * 0 0 TGTTGACTAGCCGCAAGCTCCCTGGACAGAGGCAGTCTAAGCGGTCCGTT ;<<8<<>=9<=?:8:?:?8:A>;3;<=<8;<9?69>99;:;;77;:9/,; +853_439_1980 77 * 0 0 * * 0 0 CAATCAGTTTATGCAAGCTAAATCCCCGAGACTGAGAACGAAACTCTCGG ,<='0/71(/:.;2<<9:5>7?2<8<=9987;51?*=>:(7;<,()&:6/ +853_439_1980 141 * 0 0 * * 0 0 TGGAGCGATTTAGACCGTATTTTAGTCTCCGCCGATAATAAGAGCAATCT 952;8:98452>4=9;:0=3)6/76-666=777+<4::&86.;'7;:+5' +853_440_379 117 chrM 8797 0 * = 8797 0 TCCGTCGCGTCTCACGCCTCAGGAGCACTTTGGGACGCCGCTATTTGTGT 6<=8:7:366/<70;+5:9;7:;:<:899=89<8;:79><3:<8:5<8=9 +853_440_379 153 chrM 8797 37 49M = 8797 0 CCTTACCATATATCAATGATGGCGAGACATCATCCGAGAAAGCACATTC OOR\KGMS]SU]]ZY]YOQJQ]]\]]]]]]]]]\]]]]]]]]]]W[][X XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:21A27 +853_443_704 89 chrM 8985 37 49M = 8985 0 GCTGCTGACCACCCACAGGTATCCACCCCTTAAACCCCCTAGAAGTCCC K[ZHA@@A!.]]\]][]]]]]]]]]]XW]]]YT\]]ZX]]]]]]]]XY] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_443_704 181 chrM 8985 0 * = 8985 0 TGTTCCTGTAGTATATCACTTTTTTGCCCAGGACGGTGAGACACATGAAG 7:/><:;,?:::>;>=;:>>><9@>;>8A;=?@A@=?=?<=>AA>>AA<@ +853_443_1353 77 * 0 0 * * 0 0 AGCCGAAACGATTGTCGTGTAAAGGCGTCCGCCGGGTCAGATCGAAACCG 921/5>7972<889;:;9:3?>5;/95<509=7.878/4/;:.28;9/3( +853_443_1353 141 * 0 0 * * 0 0 GACGGAGGAGGGTAGTGCGGGGGGCGGGCGTGGGGCTTGAGAACGGCTCA 95:19@9979:<4,82>02:3;5.46:65:5<95<7:;7;:>9*;:<:82 +853_458_262 77 * 0 0 * * 0 0 TTACCTGCCTCTCCCTCGCCACTTGGATCGCCGGCTGACTCTACATTACA <;:=7:;;<8<=8;=<</<9?<9::<<:;9;;84:91#2&%,-($&&%*% +853_458_262 141 * 0 0 * * 0 0 AAGTCATCTTTCCGGGGAACCCCCCGGACCTTCCTTCTCCCAACCAAAAA >>;>=;<4><=>5;=;>2=>:>1;<><'::8>(=:?5%<=9;29<<=-0< +853_458_615 69 chrM 5320 0 * = 5320 0 TTGCTGTTACTGAAGTCATACCCTAAAGCTTAGTATGCGCGTGTGTCAAG 97899::;:<<:;;;<::9;;77:;;/8:=<6;86;34;;8695;:+5:< +853_458_615 137 chrM 5320 37 49M = 5320 0 TCTTTAGATTTACAGTCTAATGCTTACTCAGCCATCTTACCTATGTTCA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\\]]Z]]]YY]]Y][V XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_489_665 77 * 0 0 * * 0 0 GAAGAACGAGGTTTAAGATAGCGAAACCGCGACACGGACGGTAGAGTGGC ?::=-->4%&22=8)3<1;7$//6#)=(:%%<2(*,4,;7'92832:$9) +853_489_665 141 * 0 0 * * 0 0 ACGAGGAGATTAAAAAAAATGGGGTTAGATTAGATAAGATGAGAGGAGAG =>?><@=A<@@<?>>=:=:=;24&&)00+&$(4:%%'(4-#+16#-'1.$ +853_489_1193 117 chrM 5045 0 * = 5045 0 CCGGGTATAATCCATAATGGCGTTTTCCACTCTGCAAATACAGTAAACAG 85@06;<>)=55>29<;?)=>:<:===>5=>=>,><=?2=?<>>>=>=<= +853_489_1193 153 chrM 5045 25 49M = 5045 0 GCATACTAAGGACTGCAAGACTCTATCTCACATCAATTGAACGCAAATC RMO]UZ]]]]]\\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:16G32 +853_557_600 77 * 0 0 * * 0 0 TTGCCCCAAGATCGATCTTGTCCCGAAAACGTAAAGGGCCCGGTGCGAGA &+&))(51(,1&&:'7:&)=.8),/5034&.&31&0.&-/$3'&)&1&1, +853_557_600 141 * 0 0 * * 0 0 ACACGCCGCAAGTCACAACGAGAAGGCTAGGGACAAAAGACGGAGCAAAG 7-0'%()1&'&/65'1'/+,.*&&*17165:+0#-+'.&+''$-,$-&'# +853_557_1176 117 chrM 12324 0 * = 12324 0 GTGGACGGTGACGGTAACCCCCAGCCTTCCCAGGAAGCATATAGTGGGGG ;,<<=95:3==7<9@?9;9><<?:=A5@>=?6;<@=8><>:9:>79>@;> +853_557_1176 153 chrM 12324 37 49M = 12324 0 GCTTCATCATAGCCATAGCCTGATTCCTATTCAACACCAACACATGAGA []]]]]]]]]]]][[]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:10G38 +853_558_962 89 chrM 2448 37 49M = 2448 0 ATGTTGGATCAAGACATCCTAATGGTGCAACCGCTATTAAGGGTTCGTT \UV]]]]TS]]]XZ]]XFN]]]\]]]]]]]]]]]]]]\]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_558_962 181 chrM 2448 0 * = 2448 0 CTCCCCCCTCGGGGCCCTAACCTGCCGACCTCGCCCTATCGTTTACTCCT .)(0908:,&#6986$979'%<6.*772<<;>@=?=>;<>?=>>>==>?> +853_558_1569 77 * 0 0 * * 0 0 GCTACACACCCCCGAGCGGCCGGTGTAGTCGACGTGCGGAACGGTCGTAA (?16:=57:=779:995@=9?<?:>3<??=?339@?@;<@3?:8>><53? +853_558_1569 141 * 0 0 * * 0 0 TGGGGGGAATGCGTAAAGGAGGACCATGCCTCTGAGAAACACGCGCGAGA &&(?(?(8><;;;;<=;<7<;;8<:9;<88=<:<=::?8,6658/:,181 +853_563_1263 73 chrM 8090 37 49M = 8090 0 AATCTCAATCCAACAATGGCTAGTCCAACTTACATCAAAACAAATAATA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\X\][VYZSFM\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:9T39 +853_563_1263 133 chrM 8090 0 * = 8090 0 CTCGTACTGCGTAATATACAACCCCACGTCCGTTTGGCTTAACAGGAGCT @A>=?A@><?=A<==@A==?>>=;==>:1<<:?=<=<;=:?=<&:3<3): +853_563_1776 77 * 0 0 * * 0 0 ACCTTGGACCCCTCCGGCAGCATCGGACAAGACCGCTGGGTGGTCTAGGG =A><?@A:AAA@<>AA9@==?96AA=69;<>8A3>;86&?:;6&<>7??< +853_563_1776 141 * 0 0 * * 0 0 GGTCCTGCGGGCGGTTCCCAATTTCATCTGCCCGAACATAATAGGTAACC @=?=A>A@A>A?>@>>A@>A>?>1@>>>5@?@@8>?@&8><>97(:9:5) +853_584_1986 77 * 0 0 * * 0 0 ATAGCTTAACCGAATGCTTTAATAAATTTGCTGTTCTGAGGGCGTTACAC ,:)155*-9#7,;,)'232.:1(4,7#$3#97$%$,''+$,2(##,#%#( +853_584_1986 141 * 0 0 * * 0 0 ATGCCACCGCCTTACTATCTTTTTTGCTGACATCACGCCGTCTCTTGGTG ,#$)*)(($3,))$&#,(&#*))&$##&#(%+&'+$,,$2$&(#&#+,#$ +853_585_542 65 chrM 1916 37 49M = 580 -1336 AAAAGGAACTCGGCAAACACAAACCCCGCCTGTTTACCAAAAACATCAC ]]]]][]]][]]]]]]]]]]]]]]]]]YS[]]]\]]\MS]]]\TW\YTO XT:A:U CM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_585_542 129 chrM 580 37 49M = 1916 1336 AGCCTAAAACTCAAAGGACTTGGCGGTGCTTTACATCCCTCTAGAGGAG #(]]]]]]]]]]]]]]]]]]]]]]]]Y]]]]]]]]]]VV]]]Z]]YR\] XT:A:U CM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_585_1153 77 * 0 0 * * 0 0 GCTCACGCCAGTACCCCAAAGGTCAAGCCTTTCAGATTCCGGCCTGGTTC 87?><89<==9>868=95:49<>7;:96<,:=;-1::::64;58/9;;)1 +853_585_1153 141 * 0 0 * * 0 0 AAGACCAACGTAAATTATCCATTCGTACGATGCCCTGGGCATTGCATTCC <>689<?9>59781>9956245:44?6,16=466;77615206+=12$#, +853_611_981 77 * 0 0 * * 0 0 GACCTGAGCAGCAGTCGCCTGGAGCAAGCCGGCCGATATAAATCGATGCT 85275/655287&4<7<5889<176837797:835.6&44427/'48$71 +853_611_981 141 * 0 0 * * 0 0 GCACGGCAAGCGGTACGGGATACGTGAGGCGCGGTAAGCAAACCCGATCC ;=9===@::A><;<6><=;:@8;;==8<?:<<==<<3=<&>55=9;38=; +853_611_1451 69 chrM 593 0 * = 593 0 TAATAGCAGCATTCAACTTTCCTGACCTTTACTACTACCGAACCTATGGG 28#'%)5/,)46%-#28,4,/;00,'6,/'-;4%(#9,###:++'.9*## +853_611_1451 137 chrM 593 25 49M = 593 0 AAGGACTTGGCGGTGCTTTACATCCCTCTAGAGGAGCCTGTTCCGTAAT !S]]][TGDQ]WKRZWVRPLPYX[ZWTENZWXEFUX]PFRY[UUVS\QD XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:44A4 +853_626_841 89 chrM 10675 25 49M = 10675 0 CCTCCCACTCTTAGTCGCACTAATCTCTATCCAAAACCTAACAGGCTCA R]]]XZ]]]]RLZ]]]]]]]\T]]]]]]]][]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:15T33 +853_626_841 181 chrM 10675 0 * = 10675 0 CCCACCCGCCGTTCTAGGACGGCCACATTTTTATTAAGTCAGCCGGGATC ,)4,(85:>=?6@6>=7<=<>;>=<;?=A=<>>AA>@>A<>@?@A@?@AA +853_626_1431 77 * 0 0 * * 0 0 TGGGTCAATGCCCTATATGACATTAGGTTCGCGGTCGGTAACGAACAGCA 11-/8<:967:;959<<:5:<21781187057585;;*6-5$%8,2&%9$ +853_626_1431 141 * 0 0 * * 0 0 ATGTAGGTCCCTGACGGCCCCACGGAGGAACCTTAGCTAGGCCAACAGAA >5<:5897:<;4==:;7>;9;<979>89?<7;;:<9:6<49;8644.1+$ +853_628_1041 77 * 0 0 * * 0 0 TGAGCAAGACCCGTAATCTACAACGACCAGCGGTTATGACAATGTATAGC 978:5,7295,/889'529//,,:55227($128:'9*83,4&29&,%57 +853_628_1041 141 * 0 0 * * 0 0 CTATCGCTGATTTCACAGGAATCGGTCTTATAAGTTTGACCCCTTTTTTT <9)9<7839<:>/<<;>3'A9<36=<9$#9<8((<=8'&;97'7>;#2(8 +853_628_1976 117 chrM 620 0 * = 620 0 CGGACCCAGCAGTGTGAATCTGGGTAATCGCGCTGAGTGACAGCTCGGAA -&-,&&$9/84359:0;=1<7:::8?>.<9<:<:8A869=?=<;9=:<@< +853_628_1976 153 chrM 620 37 49M = 620 0 CTAGAGGAGCCTGTTCCGTAATCGATAAACCCCGATAAACCCCACCATC ON]][RQ]][W\]]]RR]]]YZ]\\]Z]]]]Z]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:17A31 +853_630_585 77 * 0 0 * * 0 0 TAGTGTCTTGGTTCGTGTAGAAGTGCCTGGCTTAGCTAAATCGAATTGCT 15/,/(/))=&,)>,):(>:<=/,)/3>:,,49/(6)/;/',.11.+9'4 +853_630_585 141 * 0 0 * * 0 0 GGCTGGACTATGCCGATGCGCGGGCACGGAGGGATCCGGGACCGGGAGGA &#$%#)%&#%#$$&(.##$##)-$&%%##&&.#&#$&-$#&'+'#$,,$& +853_630_1363 69 chrM 2399 0 * = 2399 0 ATAACAAAAGATTGAGGCCCATATTAGGTATTACCGCAAAAGGTGAGACG A@A=AAAA>A?@><?>@AAA8=:A@:?>A89:@>?=<?=@8A;;=59@8A +853_630_1363 137 chrM 2399 37 49M = 2399 0 CGCAATCCTATTCCAGAGTCCATATCGACAATTAGGGTTTACGACCTCG ]]]]]]]]]]]]]]]]]]]]]]]]]\]]]*,[]]IEZ]]]V[]]/1\SH XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_648_1618 77 * 0 0 * * 0 0 GAAAAGGGGCAGAATTTCGAGGGGAGTTAGGGCACAATCCCGCTAGCAGC &?,//&6(=77)):,)7.)933<)4%=:-8,831885//@3@:154',&3 +853_648_1618 141 * 0 0 * * 0 0 TTGATCCTATGCGGACGATTCCCGCGCTTCTGCAGTTGAGTTTTTTAAAA 1/(,/3<)+7%'/,%'&1)'09';/5.)%,)1&*111&+&5&0$4%$581 +853_649_292 117 chrM 1156 0 * = 1156 0 GGAATTCCTGGAGAGGGGGGTTGGGGGGTTGAGAAAAAGGGGGGTTGGGT ::4572;408<;82=:;?::5;9=:<::98=<57:<;;>?;;=>:;;>9: +853_649_292 153 chrM 1156 37 49M = 1156 0 CACTTAACTAAAACATTCACCAAACCATTAAAGTATAGGAGATAGAAAT VV]XR]\]]Z]]]]]]]]]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_669_616 89 chrM 8554 37 49M = 8554 0 TTCTACTAACTATCCTCGAATTCGCAGTAGCCATAATCCAAGCCTACGT YKKZ][YXT[\]]XZZYSM]]TNZ]WUXZ]]Z[]]]\TY]]][Z]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:31T17 +853_669_616 181 chrM 8554 0 * = 8554 0 GCCGAACATGCATGCAGGTGGTCAACTGTTCCTGTAGTATATCACTTTTG 3;>8==8=;>:A?:>A<@9>A=?=@<9<?>>A?@@>@@A>@<@>>=><AA +853_669_1548 77 * 0 0 * * 0 0 TTAGCTAGACATTAAACCATCCCTCTCATCTCCGGTTAACCCCGCCAGTT =;=<<=<<;=61:977/7;:96::<8.7<8;39:;976;;63)9;1+2:1 +853_669_1548 141 * 0 0 * * 0 0 TCGGGGACCGCCGCGCTCTGGCAGAGAGCTCCAGGGCGGGTGCCGGCAGG 8<977;>:=:;=:9><:9<;795<65>2>;;99=9/<4<8113/78,((& +853_678_1204 77 * 0 0 * * 0 0 GCAACCCGTACAAGTACAAGTACAAGTACAAGAACAAGAACAAGTAAAAA )=1=89;35:6:=:6;9A<5361?>1/6/=<'/;,A=&,:&>=/(5&A7& +853_678_1204 141 * 0 0 * * 0 0 CTTAAGAGAAAACCTGCTAGCAAACAAAAATAGGGGGGGAACAGAACGAG 737,88957/39486691$92<:77<:1060:9),4&/)),)(').4+,' +853_678_1908 69 chrM 14105 0 * = 14105 0 TAATAGGTCGATAACGTTAGAGACGTAAGAGGAAAGTAACTGCCGTCATG 8@?:57<:::?;=><=:<?:@=?>9=@=97?;>=7<7?:66<:;:9;=83 +853_678_1908 137 chrM 14105 25 49M = 14105 0 ATGTCATCATTATTCCCACGTGGAATCTAACCACGACTAATGACATGAA ]]][]]URX]]]WV]]UO\]]]ZXTRYNQX]]WVPNTOVXWUSRDLWEN XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:37C11 +853_718_1061 73 chrM 1329 25 49M = 1329 0 AGAGAACTTAAGCTAAGCACCCCGAAACCAGACGAGCTACCTACGAACA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]\Z]]]]]\V\]]X\ZUSU]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:43T5 +853_718_1061 133 chrM 1329 0 * = 1329 0 TGTCGAATATGCATTAAATAAGACTTGGCCGACTTGAAAAGTGTTGGCTT >A><@?@>@=>>;=<>@===<?=;>@A<=9:>;>=6==8<89:5>8>>;< +853_719_183 77 * 0 0 * * 0 0 ATTTTAGTTTACCTTCTTGAGTTCTACCTTAAACTTTGACCTCCCACCCC )/31.$%5'/#)',4#)'+$&7%%,&)#&&#%($$$$$%###%$'.##)' +853_719_183 141 * 0 0 * * 0 0 TAGAGAGCACTCCAGGGGAAGGGCCCAGAATCAAATAACAACTAATAGAA 99387)&%.,./'%682&.53/$)*65-440/#%$1$##.&$##2#,%$, +853_775_1932 73 chrM 5645 37 49M = 5645 0 CCCGAATAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTACT ]QHY]Z[TDO]]]][[]]]][]]]]]]]]]]]]]]]YY]\]]ZOKZUW] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_775_1932 133 chrM 5645 0 * = 5645 0 GTTTACGCGTCCCATTTAGCTTCGCCTATTTTCCCGTGGAGTGTCACCCA ((>3,,(/7&(A,3:5('4&<<?3;/,;8=()7@=:(3556(9:>/1317 +853_776_924 77 * 0 0 * * 0 0 GGATTGTTACGTGCGCCCTATACTGGAACTGACCAGTCATTGACTGGAGA -212<+87/3582?/4731,<2(A:956/<3148*:7/28069392;:7/ +853_776_924 141 * 0 0 * * 0 0 GTGGGGTTAAATAGTAGAAGCGCGGACAGGTCCACGTGGAGCGCGAAGAA 88;9855?888?<.;=:54875'67+1#9661#474.5374&#1:2*%88 +853_815_1179 77 * 0 0 * * 0 0 ATTCAATGGACTAAATCCGGGACCGAGGCGCGTCTGGCAGTCGACAGCTA 67827:>5597:=:<6<,224348025,71:879724,2(7/29)92222 +853_815_1179 141 * 0 0 * * 0 0 GCGGACTAGAGACGTCAACTAGGAGTAGCCGAGTTCAAAAGGGCAAAGGA <'#37,/*;1;7,;45-738,(/3,+.%21:/&93('(+7#*(,8(*(&/ +853_816_193 69 chrM 2616 0 * = 2616 0 GTGGTCTGAGTCAACCTGTAGATGTTTCGTGCACGATAACCCAGGGATTC ><><<;<@;9;>;=::>:==8<::=8>7<<:</=<8=@<?878>?<6?<6 +853_816_193 137 chrM 2616 37 49M = 2616 0 AGAAGCGCCCTCAAACTAATAGATGACATAATCTAAATCTAACTAATTT ]]]]]\]]]]]]]]]]]]]]]\\\]]Y]]]]]VY][X]]Z[NL[WMQT[ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_827_2017 89 chrM 5150 37 49M = 5150 0 TTTTAGTTAACAGCTAAATACCCTAATCAACTGGCTTCAATCTACTTCT FCHRRSLJSMOW\\Y[]YZOIDI][\]]]]\Y[Z\]ZUUZ[Y\]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_827_2017 181 chrM 5150 0 * = 5150 0 ATTTCGAATCGCACGCGCACACAGTTCGAGGATCCTCTTAAACGTTAGCG ++6=<9;<8<7935;5480<::;<;::8;8;7994=<8?:=;8;>::8?< +853_828_1138 77 * 0 0 * * 0 0 TTAAAAGTCATGAGCGTACAACACGTGCCATCTGTCCTTAATACCTATCA &)&$&)&&&&)&&%&&&&)&'&&&%&%&&%%&#&&&&&&&&&&%$&&&#& +853_828_1138 141 * 0 0 * * 0 0 GCACTATCGTGTGGCCCGATGTCCGGTCCTCCTCTCGGTTTTGGACCTGT &+&&)')$#,&,#&&')&%&'/&$$'#####&##%$$###&&##&$$### +853_843_799 73 chrM 16042 37 49M = 16042 0 GAAGCTGGACTTAAATTGAACGTTATTACTCCGCATCAGCAACCATAAG ]]]]]]]]]]]][\]]]VT]]]YZ]]]QR]]]]W]]]UV]]]OL]]TQT XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:27C21 +853_843_799 133 chrM 16042 0 * = 16042 0 CTACACCTGCGTATCGCCTCGAAAATGCTGTCACCTTAAGCACGTTTAGG @>>=A:AA=A9A>@4:=>:8:2?:@23;>;;9=1<=;=933'58>;9>:6 +853_843_1357 73 chrM 13593 25 49M = 13593 0 TCCACGAGTAACCTCTAAAATTACCAAGACCCCAACAAGCAACGACCAA ]]]]]]]]]]]]]]]]]]]]]\]]]]]VU]]]XJQ]]\UYYXTOX]ZQN XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:45T3 XA:Z:chrM,+13593,49M,3; +853_843_1357 133 chrM 13593 0 * = 13593 0 GTTTGCTAGAGTCGTATGTAGTCGTCGTTTCACGTGACCGGTCTACACCC >:AA8=?:??:?@>@?><>8<;<:>31=>:8(=8<74=,9;?5;724>48 +853_844_231 77 * 0 0 * * 0 0 TTAATTCTAGGTTTAAATGGAATTAAGATCCTGAGCCGGCCAAACCCGGG &&8151/>,/,/8,(?<=&('(?/;8&8))<?11=39%718,$,./9*89 +853_844_231 141 * 0 0 * * 0 0 GGGGGACAGGTGGAACTGGTAGACGGTACAAGGGAGAGCGCAGGGGATCA 4289*5)*(/(/+;=$/806&&*76&,.19&4754&2/9/92>3;)11:, +853_844_634 77 * 0 0 * * 0 0 TCTATCCACCGAAGTCAGTGTCTGAAGTCTTAGACACGTTCGAAACCAAT 7#56860817:11777)66,9&>7%;188/87,9&5608#9.764682%0 +853_844_634 141 * 0 0 * * 0 0 TCGAAAGCTCAACATCATCCGGCAGGGCGTAAAACTGGTCGCCCATTGAA >A;887A=2@9>;.;<67,;?::2:<;9#?<97/7<944:;):&*>90,6 +853_877_1974 77 * 0 0 * * 0 0 TTGCCGTGAGGCGATTGTACCAAGATAAAAACAAAATAACCTAAAAACAA *,*-4'#)74,',)(*##,#&#+#%##&#$'##%##)(#$%##$#(##'# +853_877_1974 141 * 0 0 * * 0 0 GCGTCCGCAAGGCGCGGAGCCTGAGAAAATTAGCCCGCGAGAATGACTAT 76187559,719324834789;;285501;<<65:<<:9;;99=<830+: +853_878_1093 69 chrM 2417 0 * = 2417 0 GGTTGGAGCGGGATAGCAAATGAGGATCCTGTCACAATCTCCCACTCCGA @@/&3,(,,5533/161?@57/1,3>3<<8>53)65=1)735,1A<;:8@ +853_878_1093 137 chrM 2417 37 49M = 2417 0 TCCATATCGACAATTAGGGTTTACGACCTCGATGTTGGATCAAGACATC OZ]]]Z]]YWI8J]]TJX]]N;K]]RAN]N;3@XZH9=NYH>T]UE!/X XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_887_1933 89 chrM 11695 25 49M = 11695 0 CAAACACGGCTCTCTCAAACTTTTAAAGGATAGGAGCTATCCGTTGGTC W\]]UJN][WZ\]]]OR]]]]]]]]]]]]]W[]]]TQZ[]JCQV\]]Y] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:6T42 +853_887_1933 181 chrM 11695 0 * = 11695 0 GGCGCCAAGCCGTCCGACGACACTTGCGATGTGGGGACAGAGGGTGTGAA ))%,&))3#=4:=;<=:>8<:9=;?@<=<<>?A==;9<:><<<7@>>?4< +853_888_1016 77 * 0 0 * * 0 0 TACGGGGGAAGGGCATCCCGACGTTCAGGGCTCGGCACCACCCCAGAGGA &(,,//6)))'<&/9&')/,,)(,&,&&9&<)/'3,),/&&)7:)(/),/ +853_888_1016 141 * 0 0 * * 0 0 TGAAGACCGGGGGTCCTATGATCAACCCAACCATGAATTGTCACAGACCG &.+/)(-#'('&5#405$2220&,/03$0+)9$(#)4%%&&-,#&#),'# +853_943_830 77 * 0 0 * * 0 0 TATTTTTGGAGTACCCTCCTGTACCAATAAACGTGGCCCCGCCGGGTGCA 61)5/6,34'20)%@#)#<%#$<)6+33&6&')4&0'0*(#'215.$'9/ +853_943_830 141 * 0 0 * * 0 0 AACCTACTATGCTCATGCTGGAGAAGAAAAACACCGGTGCCATCAAACCA (>,5+''#1):,#>#10#%2:%$3&(4#.#..#*39(#':6,$'%))##4 +853_944_156 117 chrM 2054 0 * = 2054 0 TTCGATCAGGGTACGACTGTGGAATTTTGAGTACTGCGTCTGGGACATTG :<3><=.:><?19>99.;>;67:>==<=A=?;::>=8<??>>>A<<==;; +853_944_156 153 chrM 2054 25 49M = 2054 0 TCACTTGTTCTCTAAATAGGGACTTGTATGAATGGCCACACGAGGGTTT PV]]\XV[]]]X[]]]]]]]]XW]]]]]]]]]]]]]]]]]]]]]\]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:10C38 +853_946_129 89 chrM 7799 37 49M = 7799 0 GTGATATGCCACAGTTGGATACATCAACATGATTTATTAATATCGTCTC ORU\]]\\V[]]]]]SS]]]]]]]]]\]]]]]]]]]]]]]\Z]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_946_129 181 chrM 7799 0 * = 7799 0 ACGCCACGCAGCGTAACGGCAAGCGCGGGCTCAGCACGAGACCTTGCGCC '&($%,4().)8%.4::%$'492/(88.$0:<,&,=7/.,7,$',:;<:8 +853_946_1345 77 * 0 0 * * 0 0 GCGCCCGCCGTCGGGCTGAAGAGGTCGGCCCCGACCGCCGTCACCACCAG 8386936:688649:8;80:8#,#/,#1#-3#,#)4)2#42)&&12'2%/ +853_946_1345 141 * 0 0 * * 0 0 TGGACCCGAATCCAAGCAGCCTGCGAACAAGGTAGGCGCCTGGTTAGCCA ?A<:<<A:=<:@6<><@:=>1@=<==<4:>:=<:>985::685;:2689; +853_967_1892 77 * 0 0 * * 0 0 TATAATAGGTAAGTTCTGCTCGGAACATATTTTACCCCATTCTGCCTACC 8;64;9:878<=<9;:8>5:;9<>:;>769&;1://6&8;):1890:471 +853_967_1892 141 * 0 0 * * 0 0 TCGGGCAGATGGCGTCAATATCCTAATCCCGCGGAGCGGGCAGTACGGAT :>;<<<@==;<<<>;2-#8>87'9><*%=@271=A6//=;)7,;=1).:5 +853_968_485 77 * 0 0 * * 0 0 CCCGGTCGTCCGTTTGCGGTAAACGGCAACACAAAAACCCCAACCTTACC <=?;>==@<;>;<=><<?:<=?>=;?<>>=:><>=>7;>>7;8<::8:>< +853_968_485 141 * 0 0 * * 0 0 GAATGGAGGCGTGCATTTGAAAACGAGGCCAGGAAACTTCAGTACAGGAA =<:@<;:>@AA;>A9?8===<=>9<4;=7:2==9;94?@>.,;&;,=<&0 +853_968_835 117 chrM 7621 0 * = 7621 0 GTGTCCGCGCCGGAGCCGATTAAGGATATTTTCCCGTATCCATGACTTAT -986=;>48<==:<==<5<<9>::<=>>8<;>;?>><>=@:>:?<:<;A6 +853_968_835 153 chrM 7621 25 49M = 7621 0 TACTACGGCCAATGCTCAGAGATCTGCGGATCAAACCACAGCTTTATAC ZLCP"!ATX[NN]]]RR]]]Y[]]]\]]]]SS]]]YZ]Y]USVY]UU]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:8T40 +853_968_1657 117 chrM 1985 0 * = 1985 0 CATAACAACATTCGGTAAGGTTTGATTAAAGTCAGCTCGTTGTTGGAAAA &%%)&')##$*,#$#$(#####,&#*%&$+##36<6<<8;99<9<88::; +853_968_1657 153 chrM 1985 37 49M = 1985 0 GAGGCACTGCCTGCCCAGTGACATCTGTTTAAACGGCCGCGGTATCCTA \TZ]Z]ZTY[[[]]]]Z\]]]]]]]]]]ZY]]]\Z]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_985_616 89 chrM 231 37 49M = 231 0 CCCCACGGGACACAGCAGTGATAAAAATTAAGCTATGAACGAAAGCTCG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:45T3 +853_985_616 181 chrM 231 0 * = 231 0 GGTGGGTTGATATCGCGTCACTTAGGGTGGTAAGGTATGGTATCACAACA )$)($$#1&,&,#)#1&6=3;<=?;568=:;>@868@@@4>=@>>8A?@= +853_985_1608 77 * 0 0 * * 0 0 TGTAAGCTATTGATTATACGCCCAGATGGACAATCGACAGGAAGGGAGGG <:99:7<::<:>,<<;=:<97?5/:/;:2::::58<921;>:::<=19=< +853_985_1608 141 * 0 0 * * 0 0 CCTCGAGTAAGGAAGAGAGAAGGGTACGATTATAATCCTCCCAAAACGAG @798;<9::<9;<:=?9>8;=9:97?68?=;1<:58:3/97%2)%-)#&# +853_991_1890 73 chrM 3733 25 49M = 3733 0 ATGTCTGACAAAAGAGTTACTTTGATAGAGTAAAACATAGAGGCTCAAA ][]RO]]TDABJVW]UU]XURWUR]]]]]SO][IHW1(NUSD!!H\6$: XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 +853_991_1890 133 chrM 3733 0 * = 3733 0 AGGGGGGCAAGTTCAGGTTAATATATAAGTTTAGCCCAAAAATTACCTTC >,>)&,(->>.32(<@>1&=)/:/)>/&+((>,;)3;&1>=;,%63=7:9 +853_992_1006 73 chrM 5367 23 49M = 5367 0 CATCAACCGCTGACTATTTTCAACTAACCACAAAGACATCGGCACTCTG ]]YT]]W\\U]YOT]]]]]]ZV][]]RT]][Z]][]][\ZUSYTRXQPY XT:A:U CM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrM,+5367,49M,3; +853_992_1006 133 chrM 5367 0 * = 5367 0 CTGAATCAATGAGCCCACCACCACCCAAATGCTACCTACAGCAGACAGAG ###(#$#$0###1(###+,'##*##%#%##&##0####$&'#*%*'%#+# +853_992_1044 77 * 0 0 * * 0 0 TGCGTCGTGCGCTACTCCGTATTCCCCGGTAGGGGAACCTCGTAGGACGG &/5-<)&(':4+<3838&&4&7'1-17&,/11044//$&,%8,%$4,-%# +853_992_1044 141 * 0 0 * * 0 0 ACAGAGGCCCACCTGCTCACTCGGACAGCCGCCCACGATGAGCACTGCTC :70.7143#46<257:>/,488938=96958:/75;29)715689/8(&+ +853_993_143 77 * 0 0 * * 0 0 CGGAACGAGGGAGTATAAGCATAGTCCCGCATCAATAGACCTATGGATTT <788::9:8:77>3,6;<768:?:39<=:611>9751:;8:55895(>;3 +853_993_143 141 * 0 0 * * 0 0 CGGGGCTCCAAGCTCCCCATCGAGAGACTGGGGTCCGTACACCAGACTCG ;759<65;<>97<::==@/8;6;6<:;85==1::;;:97<,9=937:79: +853_996_488 77 * 0 0 * * 0 0 TGCCCCGTCCACAAAACTCTAGACACACGCCGACCTTGGCAAAAGAAGAA .&'6,#*<(%'8('(,8.4'.1*9)81-0(*0$&2+-)5,0/,1*21#%* +853_996_488 141 * 0 0 * * 0 0 GCGTACCTGAACTTGGCCATTAAGAGCAGAGCCACCAGTGTCGCGGGGGC &-'*/*/8)$2(,.22&10&,))0/+,$38'(531,)2)'((%'6'(-1. +853_996_1656 113 chrM 16037 25 49M = 1018 -15019 AAATTGAAGCTGGACTTAAATTGAACGTTATTACTCCGCATCAGCAACC YVP/1W[[\]YY\]\\]]]]ZT[]][[]]]]\]]]\Y[[ZWY\Y\]]]] XT:A:U CM:i:1 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:32C16 +853_996_1656 177 chrM 1018 37 49M = 16037 15019 AGTATACCGGAAGGTGTACTTGGATAACCAAAGTGTAGCTTAAACAAAG ]]]\]\]UQ]]][]]][]]]]]XW]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_997_740 77 * 0 0 * * 0 0 GGGGGGAGATCGGTCGTCCTCGCGATTCGACGTAGGGAAGGAAACCGAAC 9&5;'.1')&(4&2&(,'))=&,,-.&+,&)(.,7/2)(4/-'95,4,<3 +853_997_740 141 * 0 0 * * 0 0 GTTATCGGGGGTTTTCGCAACATAGCTTTGGTAAGCATTTCTGCACCCCT (=('(,(,+<=3?<;::97<;::9<;8:4;<;9::=38:;?=;1<99087 +853_1026_2018 77 * 0 0 * * 0 0 CGGTCTCCGTACGACGATACGCTTTACGGTATAAGCCAACTGGAGTGGGT 6<7=7;6,7=(6928:#;#.8#$'7###4(%/#$.'')0'3$(&)&(2** 853_1026_2018 141 * 0 0 * * 0 0 GGAGCTATTGCTCAGAGGCCATGTGGTGTCCGTTGGCGTTTGTGCTGGTG 9<#64>;#659;#%61;'11&<+7#9=-3(3:/3342&)361&&(34#%, -853_1026_2018 77 * 0 0 * * 0 0 CGGTCTCCGTACGACGATACGCTTTACGGTATAAGCCAACTGGAGTGGGT 6<7=7;6,7=(6928:#;#.8#$'7###4(%/#$.'')0'3$(&)&(2** -853_1027_1303 137 chrM 3893 37 49M = 3893 0 GGGCCCATACCCCGAAAATGTTGGATTACACCCTTCCCGTACTAATAAA ]]]]]]]]]]]]]]]]]]]TS][QV]]][Z\]YXTWWYYQXXYML[TK' XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 853_1027_1303 69 chrM 3893 0 * = 3893 0 GAATTATTCTTTTTCGGCTTACTATACACTTTACTAAAATCCTTAAATTA *,10,,;0##3##&#%&#&(%##&##$&#%####%%&$#&#####$##$$ +853_1027_1303 137 chrM 3893 37 49M = 3893 0 GGGCCCATACCCCGAAAATGTTGGATTACACCCTTCCCGTACTAATAAA ]]]]]]]]]]]]]]]]]]]TS][QV]]][Z\]YXTWWYYQXXYML[TK' XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1055_941 77 * 0 0 * * 0 0 TCGTTATGGAATTATCGATTCCGCTAAGCACTCGGACCCCAAACGTACCT AA@<@@AA=?@AA?@A@@@@?@A8>>@A><>77=>>=>=>>?=A:<1>8@ 853_1055_941 141 * 0 0 * * 0 0 TCTTGAGGTTGCGTAATTCACGGTGAAATAAGGAATAGTATCGTATCGAA 5&1)>3175@6//;@:3/)=5&$#&&&&&&&%&$'&&%&)&&$&&&&/&) -853_1055_941 77 * 0 0 * * 0 0 TCGTTATGGAATTATCGATTCCGCTAAGCACTCGGACCCCAAACGTACCT AA@<@@AA=?@AA?@A@@@@?@A8>>@A><>77=>>=>=>>?=A:<1>8@ 853_1056_37 117 chrM 1193 0 * = 1193 0 AAAGCAAAGTGGGGGGTAGAGAAAGGGGGGTTGGGGCACTAGTCGATAGC (&47&&,&,&-*):164,5511;9;6/5;:0':15&,;;24'06/<6:): -853_1056_37 153 chrM 1193 25 49M = 1193 0 GGAGATAGAAATTTTAACTTGGCGCTATAGAGAAAGTACCGTAAGGGAA !!(BOW05\WSGGRNOPLLNRX]]XY]]]]OP]XVVW]]]]]]]XU\]] XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 +853_1056_37 153 chrM 1193 25 49M = 1193 0 GGAGATAGAAATTTTAACTTGGCGCTATAGAGAAAGTACCGTAAGGGAA !!(BOW05\WSGGRNOPLLNRX]]XY]]]]OP]XVVW]]]]]]]XU\]] XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 +853_1075_559 77 * 0 0 * * 0 0 TCCACATGACCTCTACAACAGCCTAAAAGTATCAAGCGGCCCAGGTCAAA 86*0.#&1*,4#2'&/'%1)152+02'9#))&)%&*&'%+*0#'#&-.$0 853_1075_559 141 * 0 0 * * 0 0 TGAGCGCCACAGAGGGGAGTGAAACCTCGCTTCTGTATATTAGGGTAGGG #&5*&&(1&%&)2$,=(5+;9(0$2:&)%%$)1#:(#)2*,(',)#(,,# -853_1075_559 77 * 0 0 * * 0 0 TCCACATGACCTCTACAACAGCCTAAAAGTATCAAGCGGCCCAGGTCAAA 86*0.#&1*,4#2'&/'%1)152+02'9#))&)%&*&'%+*0#'#&-.$0 -853_1076_58 137 chrM 2475 37 49M = 2475 0 CAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAAAGTCTTACGTGAT ]]\\\]]IIUW]JJ\\]YYYZ]\\]][USZZZQOWX]YTRQ\OIPQWNE XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 853_1076_58 69 chrM 2475 0 * = 2475 0 ACAGGTCTAAGCCCGTAAAGTCGATCACGGACGGGTCGGCTTATATAGGC 78=89::;::8<:3<<;<9<8948;73:<<59::8:96:=(67881599, +853_1076_58 137 chrM 2475 37 49M = 2475 0 CAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAAAGTCTTACGTGAT ]]\\\]]IIUW]JJ\\]YYYZ]\\]][USZZZQOWX]YTRQ\OIPQWNE XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_1091_1124 77 * 0 0 * * 0 0 TTGCAGTCCTGTGCGGGGCGGCGGATTCGCTGCCTGTGCTGGGGGGTGGG 6;;;<===<@9?4:A<>9=>8;=<6=>/5578))2.&''(&%$$-+./$, 853_1091_1124 141 * 0 0 * * 0 0 GGAAAGTCAAAGGAGAGAATCGGCCCTGGAGGTGGCGTAAGGCGGTGTCC =?>@A??>@<<>9;9@>5;<A;??>A?:<>?;5:9;674;<518:5$=09 -853_1091_1124 77 * 0 0 * * 0 0 TTGCAGTCCTGTGCGGGGCGGCGGATTCGCTGCCTGTGCTGGGGGGTGGG 6;;;<===<@9?4:A<>9=>8;=<6=>/5578))2.&''(&%$$-+./$, 853_1092_230 117 chrM 197 0 * = 197 0 GATACTTCGTGCCTGGATTGTGCCTTTCTTTTCTTGGATCTTTTCGTCTC 0)/8'/785%+59539,67%1974*)/;5+:2=7(9-=2,//;3&3,>)1 -853_1092_230 153 chrM 197 37 49M = 197 0 ACAAAGTAGCTCATAACACCTTGCTCAGCCACACCCCCACGGGACACAG JX]YUTTOU]OO[]]]URUY[XY]Y[]][]]]]][[Z]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:1G47 -853_1094_1720 137 chrM 7802 37 49M = 7802 0 ATATGCCACAGTTGGATACATCAACATGATTTATTAATATCGTCTCAAT X[]]]]VRSYXRY\]]]]\]XPRTTYXUSRUVYILXOSSMOQSLTSNXU XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_1092_230 153 chrM 197 37 49M = 197 0 ACAAAGTAGCTCATAACACCTTGCTCAGCCACACCCCCACGGGACACAG JX]YUTTOU]OO[]]]URUY[XY]Y[]][]]]]][[Z]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:1G47 +853_1094_215 77 * 0 0 * * 0 0 GCGAACAGGGACGCAGCGGTGAACGATTTTCGCCTCCCTCACCGACCCCA 8;8.,:/*2./:*#3.2+2'(82&)$&266#4)(2/'*%1%$4'1*-:.3 +853_1094_215 141 * 0 0 * * 0 0 GCCTTTCTCCCTCTCCTCTGGTTTCGCCTTGGAACAAGCGAAGAACAGGC 4)&/-,1&$77/,.114('(1+)%'*0#,3$$#,#'&(#$$)#,$%3,#+ 853_1094_1720 69 chrM 7802 0 * = 7802 0 TCTAAGTAAGCCTAGCGTCCCTCTATGCTGTAGTGACCAGAGAGATTGTC 730,<8814/7479>7<7/1=;/:)=2;;,<<<;55=;7<==8/,:;&7' -853_1094_215 141 * 0 0 * * 0 0 GCCTTTCTCCCTCTCCTCTGGTTTCGCCTTGGAACAAGCGAAGAACAGGC 4)&/-,1&$77/,.114('(1+)%'*0#,3$$#,#'&(#$$)#,$%3,#+ -853_1094_215 77 * 0 0 * * 0 0 GCGAACAGGGACGCAGCGGTGAACGATTTTCGCCTCCCTCACCGACCCCA 8;8.,:/*2./:*#3.2+2'(82&)$&266#4)(2/'*%1%$4'1*-:.3 -853_112_119 141 * 0 0 * * 0 0 TCCCGGGACAACGGAATTAACAACCCCCGGGTGGAATCGGGTGGGAGGCG ))&)994&,/1(+-+.-('(02)145,.&42,#&).,&(-0.%,',%:(0 -853_112_119 77 * 0 0 * * 0 0 CCTAGGATAATACGCGGACAGGGGAGCTCCGGGGGGAGGGGACGGGGCGG 7)&8327,(41&&),%1/)%+242(1,)')&15,)&05#$50,$$87&.$ -853_112_253 137 chrM 1041 37 49M = 1041 0 ATAACCAAAGTGTAGCTTAAACAAAGCATCCAGCTTACACCTAGAAGAT WTVVUWTQYWRMT][YTWNITY]ZSW]]]RU\Z\]]]YTWVSTWX\ZM> XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_112_253 69 chrM 1041 0 * = 1041 0 GAACGCTTATGGGGTCCGCTAGCTAACGCCGCCTGGCCAATAACTATAGT ;9;97857&:;6;&983;4=83/,::2=,8;7(&<;/8+275(/9-1&(; +853_1094_1720 137 chrM 7802 37 49M = 7802 0 ATATGCCACAGTTGGATACATCAACATGATTTATTAATATCGTCTCAAT X[]]]]VRSYXRY\]]]]\]XPRTTYXUSRUVYILXOSSMOQSLTSNXU XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_1138_1582 89 chrM 7649 37 49M = 7649 0 GATCAAACCACAGCTTTATACCAATTGTTCTTGAACTAGTTCCACTGAA \]UPSS\RLW\]RPYY][Y]\]]ZY\\[Y]]]]]\]]]SS]ZVW]]][\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:28C20 853_1138_1582 181 chrM 7649 0 * = 7649 0 TCAGGAGCAATGGGTCATAGCGTTGGTGTTGTTGGAATCAGTGGGAACGC 86<8;?5:99>6<>/@=9=8==7=@=<7;<><:?=@?;>@<9<=?@@@=? -853_1138_1582 89 chrM 7649 37 49M = 7649 0 GATCAAACCACAGCTTTATACCAATTGTTCTTGAACTAGTTCCACTGAA \]UPSS\RLW\]RPYY][Y]\]]ZY\\[Y]]]]]\]]]SS]ZVW]]][\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:28C20 +853_1139_914 77 * 0 0 * * 0 0 CTATGAATCAATTTGAATAGTCGTCTTAAAATATGGCACCAAAAGCGATC <(),)&6:$&>'8)('$&5)$*'#+'1#.6,)#$1&('',&6&+',&&+/ 853_1139_914 141 * 0 0 * * 0 0 GAACTAAAGCCAACGCGGCAAACCTTGTGCAGCCACCGCAAAACCACACC )4#%&+2%$,/$##*000$&.2(,'',,#'&#%%)%%#+,'-&$,$*&)* -853_1139_914 77 * 0 0 * * 0 0 CTATGAATCAATTTGAATAGTCGTCTTAAAATATGGCACCAAAAGCGATC <(),)&6:$&>'8)('$&5)$*'#+'1#.6,)#$1&('',&6&+',&&+/ +853_1144_824 77 * 0 0 * * 0 0 GCTCGCTCTCAAAGGGGAGAGGGAAAGAGCTGCTGGGCTGGGGGACCGTT '(')%&,:4'.+4.:4(/028:9;:;01:;/6-(8344)/#++1),&9)& 853_1144_824 141 * 0 0 * * 0 0 ACCGCAACATGCTGAATATGACCTAGCAAACTACGAACAATCTGAACCAC '8'..1/#3)()&$%'/(&&#((('$1(.#+))',$)%(#(+),,,#$.) -853_1144_824 77 * 0 0 * * 0 0 GCTCGCTCTCAAAGGGGAGAGGGAAAGAGCTGCTGGGCTGGGGGACCGTT '(')%&,:4'.+4.:4(/028:9;:;01:;/6-(8344)/#++1),&9)& 853_1145_305 117 chrM 13509 0 * = 13509 0 GGCCAGATGTGGGCGAGCATTCCTGTCAGTACTCAAAGGTGTAAGACATC <=;>=883>6=>;=:8==;=?>;=<==<>><=>=:9;;<=?>><>:<=?= -853_1145_305 153 chrM 13509 25 49M = 13509 0 TAATTTCCACCCAAAAAGGCCAAATCAAATTATATTTCCTCTCATTCCT SY]#)]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:19A29 +853_1145_305 153 chrM 13509 25 49M = 13509 0 TAATTTCCACCCAAAAAGGCCAAATCAAATTATATTTCCTCTCATTCCT SY]#)]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:19A29 +853_1148_420 89 chrM 5650 37 49M = 5650 0 ATAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTACTTCTTC UVVVFA<JWQXSU\RPSWOJP09YPT]]XSZ]]]JO\]]XX]]]UUZ\# XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1148_420 181 chrM 5650 0 * = 5650 0 TGACCCTCGGGCCAGGCGACCTATATGTCCGTGCATGTCACCTAGCGCAG =<:5;<1:,:=8;==?9;><>><3@><;@>@==A@>?:?@?=<A@=@>>? +853_1148_1437 77 * 0 0 * * 0 0 TTTTCCAGGTGGCGTGTCCTTAGCAGGCACTGTGATGCTCCTTGTTTAGA 3875((77'%//28,(884:9/(;$59(03%%(5$'%+)$)&-.7513(4 853_1148_1437 141 * 0 0 * * 0 0 TAGCGGGGCGTAAGAAAGTAGAGTTGCTGGAAGATACGGGAAAAGAAGAG 59)&&;')&&4,1)&/;&(-)1&/(6/,0,1<<,:<5(748':;9==/7< -853_1148_1437 77 * 0 0 * * 0 0 TTTTCCAGGTGGCGTGTCCTTAGCAGGCACTGTGATGCTCCTTGTTTAGA 3875((77'%//28,(884:9/(;$59(03%%(5$'%+)$)&-.7513(4 -853_1148_420 181 chrM 5650 0 * = 5650 0 TGACCCTCGGGCCAGGCGACCTATATGTCCGTGCATGTCACCTAGCGCAG =<:5;<1:,:=8;==?9;><>><3@><;@>@==A@>?:?@?=<A@=@>>? -853_1148_420 89 chrM 5650 37 49M = 5650 0 ATAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTACTTCTTC UVVVFA<JWQXSU\RPSWOJP09YPT]]XSZ]]]JO\]]XX]]]UUZ\# XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 -853_1149_1929 137 chrM 8987 37 49M = 8987 0 TGCTGACCACCCACAGGTATCCACCCCTTAAACCCCCTAGAAGTCCCCT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]VY]]Z]]]ZOTJJYTNV]]TO XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1149_239 77 * 0 0 * * 0 0 CTGACCGCTATAGCGTGCGGAACAGGGGGGCCCTCTTCAAGCGGGGAGGG 3<51,*1*)88&%:1%+)%8'$//0.15*4';195/&//'9;(&38)7&- +853_1149_239 141 * 0 0 * * 0 0 TCCACTCGGCATCTCTTGCGACCGCTTGAGGGGTCTAGAAAAGCCCTGGG $$+,#2#',+*%0'',#$*4(8#'0$5&#+0/4+*0+5%&(2)#&3/('+ 853_1149_1929 69 chrM 8987 0 * = 8987 0 CTAGTACCACCATTGTAGTAACGAGGGCCGTATTTAGGAGGGGCGCAAGG ><:<=98>;;>=<>><@@==>=A=<<;><;>:><>9<?<:><<<;>;<>< -853_1149_239 141 * 0 0 * * 0 0 TCCACTCGGCATCTCTTGCGACCGCTTGAGGGGTCTAGAAAAGCCCTGGG $$+,#2#',+*%0'',#$*4(8#'0$5&#+0/4+*0+5%&(2)#&3/('+ -853_1149_239 77 * 0 0 * * 0 0 CTGACCGCTATAGCGTGCGGAACAGGGGGGCCCTCTTCAAGCGGGGAGGG 3<51,*1*)88&%:1%+)%8'$//0.15*4';195/&//'9;(&38)7&- +853_1149_1929 137 chrM 8987 37 49M = 8987 0 TGCTGACCACCCACAGGTATCCACCCCTTAAACCCCCTAGAAGTCCCCT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]VY]]Z]]]ZOTJJYTNV]]TO XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1231_1371 77 * 0 0 * * 0 0 ATATCTCCTTCCATTTCTGCCTGCGCCTATGTCCTTTTAGGGGTGTTTGC ,/0,.#'#$954),&#-',;.*##*(*.'82#$#2*$*#(%%&###,'#+ 853_1231_1371 141 * 0 0 * * 0 0 CGCAACGTTCGTTACCCCTGTGTTTATACCTGATTTGAATTTAATCGAGG #:2+%%-,#,-/''''#&**+.#%&,*)#*#1$$&+%$%'%&3$'/$'(/ -853_1231_1371 77 * 0 0 * * 0 0 ATATCTCCTTCCATTTCTGCCTGCGCCTATGTCCTTTTAGGGGTGTTTGC ,/0,.#'#$954),&#-',;.*##*(*.'82#$#2*$*#(%%&###,'#+ +853_1231_1635 89 chrM 3568 37 49M = 3568 0 AACATGTTCCTTCCTATGAATCCGAGCATCCTACCCACGATTCCGATAT YWRUYRTQEFQZ\WY][SUZZYX[]]TQ\WY]VV[]]ZW[]\OR]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 853_1231_1635 181 chrM 3568 0 * = 3568 0 CGCATGTCAATCTGGTCCTTCATGCAAAATCTTGACTGAATTAATAAAAG 37):115'<654068;15:98:,67:74<9967;=<65@9:9;?;<;=>< -853_1231_1635 89 chrM 3568 37 49M = 3568 0 AACATGTTCCTTCCTATGAATCCGAGCATCCTACCCACGATTCCGATAT YWRUYRTQEFQZ\WY][SUZZYX[]]TQ\WY]VV[]]ZW[]\OR]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 853_1232_516 117 chrM 1292 0 * = 1292 0 GTTGGGGGGTTGAGGAAGAGGGGGGTTGGGGGGTTGAGAAAAAGGGGGGG 4),%/-61&)0/'&&&4&&&,4/&-*5)&)/5.&&)+(&'*(,&'))685 -853_1232_516 153 chrM 1292 37 49M = 1292 0 CTTTTGCATAATGATTTAACTAGAATAAACTTAGCAAAGAGAACTTAAG !8[04XW]]ZZX]][XV]ZW]]]]]]\]]Z]]]]]]Y]]]\V[]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1232_516 153 chrM 1292 37 49M = 1292 0 CTTTTGCATAATGATTTAACTAGAATAAACTTAGCAAAGAGAACTTAAG !8[04XW]]ZZX]][XV]ZW]]]]]]\]]Z]]]]]]Y]]]\V[]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1232_940 77 * 0 0 * * 0 0 TAGGGCTAAGTGTCGTGGCTGGCCCCCAGCCAAAACTTTCGCTTCTACCC >175()<>>1&','95'/A&3,/?315@,&/',,,&&5,3/&1)&1'1<' 853_1232_940 141 * 0 0 * * 0 0 GTTTTCCTGTGCCCGAACTCTTGGGGATTATTCGCCCCGAACGGTTCGTA //&)3=65://7&/,1@15,)),33=1,<),,3(3?))//,),)6,39)' -853_1232_940 77 * 0 0 * * 0 0 TAGGGCTAAGTGTCGTGGCTGGCCCCCAGCCAAAACTTTCGCTTCTACCC >175()<>>1&','95'/A&3,/?315@,&/',,,&&5,3/&1)&1'1<' +853_1236_169 73 chrM 3979 25 49M = 3979 0 CTAGGAACTATAATCGTTATAATAAGCTCACACTGACTAATAATCTGAA ]]]JJRQNV]]WUOOYKR][$"!!SSXWIKTXXW[TNRGL]95KADHGM XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 853_1236_169 133 chrM 3979 0 * = 3979 0 GCCTCCAGCTTATATACTCGAGGAGGGATATATTGAACATAGGCTGGTTG 8>9<:6<,.&99864<;>2);=52,:<59/<67<*;<:&+9:6&2<<<:) -853_1236_169 73 chrM 3979 25 49M = 3979 0 CTAGGAACTATAATCGTTATAATAAGCTCACACTGACTAATAATCTGAA ]]]JJRQNV]]WUOOYKR][$"!!SSXWIKTXXW[TNRGL]95KADHGM XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 +853_1237_10 77 * 0 0 * * 0 0 AACAGATAATACGGCCTGCTTTGAGGGCTAACTAAAATGGGTCAGCAAAC (,,;/)&5/()&=)3(&;<:3)=3=)/=&=-.8,9;<=5;,&141<,;/< 853_1237_10 141 * 0 0 * * 0 0 TAGCATGCAGACGAGACGCTCCATTTACGGTCGAGAAGTTTAGGTAAGTT 6/<779>86=-4886:>:37==:1;729=2</===6:;,6/;66)((&14 -853_1237_10 77 * 0 0 * * 0 0 AACAGATAATACGGCCTGCTTTGAGGGCTAACTAAAATGGGTCAGCAAAC (,,;/)&5/()&=)3(&;<:3)=3=)/=&=-.8,9;<=5;,&141<,;/< +853_1242_1158 73 chrM 2264 37 49M = 2264 0 CAATTTCGGTTGGGGTGACCTCGGAGAACAAAACAACCTCCGAGTGATT ][X]]]]]]]]]]X]]]\]]]]]]]]]]]]]]]]]]]]]]\OTRACKW] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 853_1242_1158 133 chrM 2264 0 * = 2264 0 GCCTTTCGAAGAGGGCCAGCGTCTACCAGACTAGCTTCCCTAGGAACAGC =@<=;@@<>==A>>@>=>@=A:>@>???=&;)19(,,&+%+&(&3'3&,& -853_1242_1158 73 chrM 2264 37 49M = 2264 0 CAATTTCGGTTGGGGTGACCTCGGAGAACAAAACAACCTCCGAGTGATT ][X]]]]]]]]]]X]]]\]]]]]]]]]]]]]]]]]]]]]]\OTRACKW] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1243_871 77 * 0 0 * * 0 0 CTGCGGGTAACGGGATGGAGAACGATATTTGATGAAGGTGGACCAACCCG 1),)*=3/4=,9<?,%46//./+1,&1/1,)<)8&,/7(>79,);668); 853_1243_871 141 * 0 0 * * 0 0 TCTGAGACGGCAAGAGGTGAATCACAGATGGGCGTAAACCATTAACTTGC 1&?()&,1>>,(=&:88>/>7=1:77=118:75/988:57283/&))'** -853_1243_871 77 * 0 0 * * 0 0 CTGCGGGTAACGGGATGGAGAACGATATTTGATGAAGGTGGACCAACCCG 1),)*=3/4=,9<?,%46//./+1,&1/1,)<)8&,/7(>79,);668); +853_1265_969 77 * 0 0 * * 0 0 CGGCTGGGGGGGCGTGATGCAACGTTAAAGGGAGGCTCTTGTCAAGAGAA $<)'(')1.8:)()8(,&<//55,'&3,))'846164.001-/+381/72 853_1265_969 141 * 0 0 * * 0 0 AGACTCGGACGGCCGAGGTTACCCCCTTGTTCCCCGGGCGAGTCTACCCC &82,4,54'),%&)'0('.9.$9',;1(#%88)*#8&(,%19,#,871*# -853_1265_969 77 * 0 0 * * 0 0 CGGCTGGGGGGGCGTGATGCAACGTTAAAGGGAGGCTCTTGTCAAGAGAA $<)'(')1.8:)()8(,&<//55,'&3,))'846164.001-/+381/72 -853_1266_828 113 chrM 105 25 49M = 1042 937 AATAAAATTACACATGCAAGTATCCGCACCCCAGTGAGAATGCCCTCTA /3[X]KFLS]]]]]]]]]]][Z]]]]]]]]]]]]]][]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:25 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:4G44 -853_1266_828 177 chrM 1042 37 49M = 105 -937 TAACCAAAGTGTAGCTTAAACAAAGCATCCAGCTTACACCTAGAAGATT \Y]\]]]]]][]]WY]]]]]]]]]][[]]]]]]Y]]]]]W]][T]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:25 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1266_828 113 chrM 105 25 49M = 1042 937 AATAAAATTACACATGCAAGTATCCGCACCCCAGTGAGAATGCCCTCTA /3[X]KFLS]]]]]]]]]]][Z]]]]]]]]]]]]]][]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:4G44 +853_1266_828 177 chrM 1042 37 49M = 105 -937 TAACCAAAGTGTAGCTTAAACAAAGCATCCAGCTTACACCTAGAAGATT \Y]\]]]]]][]]WY]]]]]]]]]][[]]]]]]Y]]]]]W]][T]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1267_170 77 * 0 0 * * 0 0 TGAAATCGGGTTTATGCCTATACCGAGACCGGGGACCAACTAGGGACGGG 30:65905%/#52:2&3(7,532).4;,,+&3$+-(2)50*&0%'&1(1' 853_1267_170 141 * 0 0 * * 0 0 GGAGTGGAGGTGGTCGCCCACCAAAAGGGCCAATTCCGTCGCCATCGCCT &%%#+,4,##,,8.,%/#'*#72&-,.#*2123-&,4$2#,2(.(,,',# -853_1267_170 77 * 0 0 * * 0 0 TGAAATCGGGTTTATGCCTATACCGAGACCGGGGACCAACTAGGGACGGG 30:65905%/#52:2&3(7,532).4;,,+&3$+-(2)50*&0%'&1(1' +853_1277_1774 73 chrM 1180 37 49M = 1180 0 CCATTAAAGTATAGGAGATAGAAATTTTAACTTGGCGCTATAGAGAAAG ]]]]]]]]]]]]]]]]]]]]]]TQXY]]XQZ]]][\\]ZVY]]YWX]]O XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 853_1277_1774 133 chrM 1180 0 * = 1180 0 TCCCTTGACAACACGAATATAGCCAATTCTGCACTATCCTAAACATCACC AA?=??>;<>>@;>A@>:?<,3%&1,,(89'92+4&0)-5+&1,/15%/, -853_1277_1774 73 chrM 1180 37 49M = 1180 0 CCATTAAAGTATAGGAGATAGAAATTTTAACTTGGCGCTATAGAGAAAG ]]]]]]]]]]]]]]]]]]]]]]TQXY]]XQZ]]][\\]ZVY]]YWX]]O XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1278_1160 77 * 0 0 * * 0 0 AAGAGCAATGGGAATGATCATGCCGCTGCGTAATGGAATGGAGTGGAGGG A=<<@AA?>@@@?;?>:>A?>?AAA@7<<,,&//1(+)&9+&&&85(1&9 853_1278_1160 141 * 0 0 * * 0 0 GTAAATCCGACCCCTAAAGAGCCAAGAACCCTAACCAAGGGTCAAAAGAA ;AA==A?:A>?A<?;AA=;79?8><7@<:::8<=97=@9<953=A<8,>6 -853_1278_1160 77 * 0 0 * * 0 0 AAGAGCAATGGGAATGATCATGCCGCTGCGTAATGGAATGGAGTGGAGGG A=<<@AA?>@@@?;?>:>A?>?AAA@7<<,,&//1(+)&9+&&&85(1&9 +853_1280_287 73 chrM 8561 37 49M = 8561 0 AACTATCCTCGAATTCGCAGTAGCCATAATCCAAGCCTACGTATTCACT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y]]\] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:24T24 +853_1280_287 133 chrM 8561 0 * = 8561 0 GATCGTTCGCGAGCATCTGGCTTTCATGTATCTGAGGCAGCGCAGAGTGC >?A??>A>@A?>@><>?><@>@?<@=@8@;@:>;<>/=6<8193@86,/) +853_1280_1640 77 * 0 0 * * 0 0 TGGTAAGACTCCTCCTTTCGGCCCCCAACCCCCCCCCCAACCGAGCTGCC A;?<;<@<<>>A=44:??:<>:=74<:>48;=583==9/8=9:228122( 853_1280_1640 141 * 0 0 * * 0 0 GTTTCACCCCCGTCGATACATACTAAGACCTAACGTGCCCGAACAAAACG 8>*2#8+#%#3/##&=:#$.=2#+1<6&(%@1#($>)#'#8(&$+=&&$' -853_1280_1640 77 * 0 0 * * 0 0 TGGTAAGACTCCTCCTTTCGGCCCCCAACCCCCCCCCCAACCGAGCTGCC A;?<;<@<<>>A=44:??:<>:=74<:>48;=583==9/8=9:228122( +853_1280_1971 77 * 0 0 * * 0 0 TATTTGGTCAGGGGCGAGGGCGGCGGCTTCAATCTTGGGGCAGTGGGTTG )9177)6,3)):16&'/,1:6<()?))()(>5><(1=<?1.&)>/6&(1, 853_1280_1971 141 * 0 0 * * 0 0 ATTTCCAAAGGTTCCTTGAGGAGAAGTGTAAACATTCTCAAGTCCACCAA ))(,8.)1)+/&',)*76&85:4'5$$'#2/&(/#.%#&4.'***-+'37 -853_1280_1971 77 * 0 0 * * 0 0 TATTTGGTCAGGGGCGAGGGCGGCGGCTTCAATCTTGGGGCAGTGGGTTG )9177)6,3)):16&'/,1:6<()?))()(>5><(1=<?1.&)>/6&(1, -853_1280_287 133 chrM 8561 0 * = 8561 0 GATCGTTCGCGAGCATCTGGCTTTCATGTATCTGAGGCAGCGCAGAGTGC >?A??>A>@A?>@><>?><@>@?<@=@8@;@:>;<>/=6<8193@86,/) -853_1280_287 73 chrM 8561 37 49M = 8561 0 AACTATCCTCGAATTCGCAGTAGCCATAATCCAAGCCTACGTATTCACT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y]]\] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:24T24 853_1281_1171 117 chrM 4957 0 * = 4957 0 TTCCTGATGAGGCAGCCTGGATGTATACTTGTGTGTACCACCTGATTGCT '+)&%(%:2&'*151;3:<49>:=<:9;>><<?<=:/=A=?:<A;?<:@< -853_1281_1171 153 chrM 4957 37 37M1D12M = 4957 0 ATACTATCAATTCTGGACTAGGAATTTAGGTTAACATCCAGACCAAGAG FSREOZRIHKRVVZ]WLR]]\YWZTW]]]YRZ]]]]\X]]VVY]]]]]] XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:1 XG:i:1 MD:Z:12T24^C12 +853_1281_1171 153 chrM 4957 37 37M1D12M = 4957 0 ATACTATCAATTCTGGACTAGGAATTTAGGTTAACATCCAGACCAAGAG FSREOZRIHKRVVZ]WLR]]\YWZTW]]]YRZ]]]]\X]]VVY]]]]]] XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:1 XG:i:1 MD:Z:12T24^C12 +853_1289_1050 89 chrM 573 37 49M = 573 0 TAGCAACAGCCTAAAACTCAAAGGACTTGGCGGTGCTTTACATCCCTCT AFW2$ETYZPIR\]XKQ\XUTQ[[@F][]MJ[Z]XQNS]LBMT\XOUWU XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 853_1289_1050 181 chrM 573 0 * = 573 0 TTTAACTGATTGCGGCGGACCGGTTATTGATATAAATGAACTCATGTAGC %*&&$(+36274':;<:5=6;3;:9:675:<74;:?6=:7878:;>>57= -853_1289_1050 89 chrM 573 37 49M = 573 0 TAGCAACAGCCTAAAACTCAAAGGACTTGGCGGTGCTTTACATCCCTCT AFW2$ETYZPIR\]XKQ\XUTQ[[@F][]MJ[Z]XQNS]LBMT\XOUWU XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1290_58 77 * 0 0 * * 0 0 ATAAGAAGGGGGTTCAACGGAACCGTGAACGCCAACCGGAAGTTAATCCC )<:<;9:>9:6==<90;<<9;;=98<;=<:1=<9.7<;6<1;>8;;<9<5 853_1290_58 141 * 0 0 * * 0 0 AGACACAGAAGAAAGACATCATCGACAGGTCCATCGTCGTATGCCAGAGC :846:=:>;;>:9:=8=<=@:;;=;,:9?@;9;><3?=6<1=6=98:/:; -853_1290_58 77 * 0 0 * * 0 0 ATAAGAAGGGGGTTCAACGGAACCGTGAACGCCAACCGGAAGTTAATCCC )<:<;9:>9:6==<90;<<9;;=98<;=<:1=<9.7<;6<1;>8;;<9<5 +853_1297_514 73 chrM 1985 37 49M = 1985 0 GAGGCACTGCCTGCCCAGTGACATCTGTTTAAACGGCCGCGGTATCCTA ]]Z\]]][]]]]UU]]]][[]XLU]]\QR]]NLYY[XU]]\X\][YXNK XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1297_514 133 chrM 1985 0 * = 1985 0 CTAAGTGTGTAACAACCACCCAACACGGCACGTCAAGATGCGCCGATACG 8@8;9>795A<8=9:A?7;@;??;5:><886<;:=6:9:8.=@=:4:9== +853_1297_1934 77 * 0 0 * * 0 0 TAATTTAGGTACGACTAACTCAATAAGCTAATTGAATGAACTAGGACTTA #&6##)0$)#4)#2##44&###7%/2##%1+#$,#*###$##5$#-###, 853_1297_1934 141 * 0 0 * * 0 0 TAGGGCTCACGGACTCCATCGCTACATCCCTCGGGGTGAAAGAAAACAAA 4*%#*,9)-*1751,197()*3-,#94&(-),$##.(#1/7%+#,0&,'0 -853_1297_1934 77 * 0 0 * * 0 0 TAATTTAGGTACGACTAACTCAATAAGCTAATTGAATGAACTAGGACTTA #&6##)0$)#4)#2##44&###7%/2##%1+#$,#*###$##5$#-###, -853_1297_514 133 chrM 1985 0 * = 1985 0 CTAAGTGTGTAACAACCACCCAACACGGCACGTCAAGATGCGCCGATACG 8@8;9>795A<8=9:A?7;@;??;5:><886<;:=6:9:8.=@=:4:9== -853_1297_514 73 chrM 1985 37 49M = 1985 0 GAGGCACTGCCTGCCCAGTGACATCTGTTTAAACGGCCGCGGTATCCTA ]]Z\]]][]]]]UU]]]][[]XLU]]\QR]]NLYY[XU]]\X\][YXNK XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1311_394 73 chrM 7953 37 49M = 7953 0 TTGAGAATCAAAATGAACGAAAATCTATTCGCCTCTTTCGCTACCCCAA 0JAJJLX33PV]]]][]]]]]]]]]]]]]]]]]]]]]]]RS]]]]]]NQ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 853_1311_394 133 chrM 7953 0 * = 7953 0 GGAATTGCCGTCGCGCGCTAGTTGGTTGGGCGTGCATGTTTTGGGTGGGT @=<><<?@?A<>?A>0(6)</.;<>:2<><07:<5(0;(4&&0;&.+1%/ -853_1311_394 73 chrM 7953 37 49M = 7953 0 TTGAGAATCAAAATGAACGAAAATCTATTCGCCTCTTTCGCTACCCCAA 0JAJJLX33PV]]]][]]]]]]]]]]]]]]]]]]]]]]]RS]]]]]]NQ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1312_213 77 * 0 0 * * 0 0 TCGCGAAGGGGACCCGTTATTTTAATAGTGCAGGGCATAACATTTAAATA 6?;==?@<<==A=;=<;8;99:8:<6>:6;<=:3(9/7986)5(./27&= 853_1312_213 141 * 0 0 * * 0 0 GATTCGGACAGAGGGCGAGGCTAGAAGGGCGGAGGGGAGCGGAGGCGAGG ?>:<?=?@=@=>;<<<?<=>?9?=:@<;<6<><61:4,1(2.)2&&,+2& -853_1312_213 77 * 0 0 * * 0 0 TCGCGAAGGGGACCCGTTATTTTAATAGTGCAGGGCATAACATTTAAATA 6?;==?@<<==A=;=<;8;99:8:<6>:6;<=:3(9/7986)5(./27&= +853_1321_1372 77 * 0 0 * * 0 0 CTTTAGCTCGCCTCAATGACCCGAATAGCACCCAGAGCAAGACTCCGCAT 5,7),=/'16=1,,':&,5);118181/18<'6;6/1@9,<9)>,,,&>( 853_1321_1372 141 * 0 0 * * 0 0 TGGACTTCAGTGGCAAGGGCGTCTAAAAATTAAAAGCTACCGTCAAACGC @A,>@(5);A&/6>>;??;7>9?19619>1=/<89<3;81>/=3>7/?/9 -853_1321_1372 77 * 0 0 * * 0 0 CTTTAGCTCGCCTCAATGACCCGAATAGCACCCAGAGCAAGACTCCGCAT 5,7),=/'16=1,,':&,5);118181/18<'6;6/1@9,<9)>,,,&>( 853_1322_846 117 chrM 3881 0 * = 3881 0 TTTTTTTCAAGTTTTCTCGGTTCGTTCGTCTTATTGGCTTAAATCCTCAG 7'8&:41-,72'$(6;-&$,5-('(4-0#;618,47-5)44#;5::;;;2 -853_1322_846 153 chrM 3881 37 49M = 3881 0 AAATAAGCTATCGGGCCCATACCCCGAAAATGTTGGATTACACCCTTCC ]YSUOT]YV]]]]XVNP]]]][]]XTW]\\\]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_1322_846 153 chrM 3881 37 49M = 3881 0 AAATAAGCTATCGGGCCCATACCCCGAAAATGTTGGATTACACCCTTCC ]YSUOT]YV]]]]XVNP]]]][]]XTW]\\\]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_1359_649 77 * 0 0 * * 0 0 GGAGAGGGGCTGCAAAATTTACCGAGCTGCTTCGAGGAGAGCCAAGGCGA <9;5<=;;::6;:;;1?88998<:>4:*91),4.5$7#,4'#$(,5.%)2 +853_1359_649 141 * 0 0 * * 0 0 GACACCCGCTCGAATCCATACACGACATAAGGGGCCTCCTGTGGAAAGCA 7>=41=&7/-)&+,8)/:):7,:<7)/0<:&&;(4(&(86'953.3>'./ 853_1359_2004 117 chrM 8663 0 * = 8663 0 CGCAGCTCGCCTCAGGAGCACTTTGGGACGCCGCTATTTGTGCTCCCTGG ,&94:;&75<=&898947:=>8<2?<><=>A?17;?<?.>>=A=@A<<=? -853_1359_2004 153 chrM 8663 37 49M = 8663 0 GCTTACCACATAGTAAACCCCAGCCCATGACCACTTACAGGAGCCCTAT ZK!%VPT]]\]]]\\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_1359_649 141 * 0 0 * * 0 0 GACACCCGCTCGAATCCATACACGACATAAGGGGCCTCCTGTGGAAAGCA 7>=41=&7/-)&+,8)/:):7,:<7)/0<:&&;(4(&(86'953.3>'./ -853_1359_649 77 * 0 0 * * 0 0 GGAGAGGGGCTGCAAAATTTACCGAGCTGCTTCGAGGAGAGCCAAGGCGA <9;5<=;;::6;:;;1?88998<:>4:*91),4.5$7#,4'#$(,5.%)2 +853_1359_2004 153 chrM 8663 37 49M = 8663 0 GCTTACCACATAGTAAACCCCAGCCCATGACCACTTACAGGAGCCCTAT ZK!%VPT]]\]]]\\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1360_1130 77 * 0 0 * * 0 0 TGCTTAGACTTTATTGCAGTCATAAATACCTATAATCCTTTGTGGTGACA >A@@<9?A:?>>?8@68?=>>9>/9<<44193577>;:;8?#,5.##4,) 853_1360_1130 141 * 0 0 * * 0 0 CAGCTCCATAGCCAATCTATTGCTCACGCAGGTCCGCGCCTACGACGTAT A@AA><:@8>@=AA@>8@A<?<@?@;=<A;A9=?A;<?>:>1>68<6?<; -853_1360_1130 77 * 0 0 * * 0 0 TGCTTAGACTTTATTGCAGTCATAAATACCTATAATCCTTTGTGGTGACA >A@@<9?A:?>>?8@68?=>>9>/9<<44193577>;:;8?#,5.##4,) 853_1361_389 117 chrM 15925 0 * = 15925 0 ATCTTTGGCTTAATCCAGTTCTTAACGACGGGCATTCGTGATACAGCTGT <94:)746=)9:6>)98798><<A=78A<=A?<A==:;7@>4?8>?=9=7 -853_1361_389 153 chrM 15925 37 49M = 15925 0 ACTAATCAGCCCATGCTCACACATAACTGTGGTTTCATGCATTTGGTAT VV]VYYS\[]RP]]]ZY]]]]]]]]]]]]XUY]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:31A17 +853_1361_389 153 chrM 15925 37 49M = 15925 0 ACTAATCAGCCCATGCTCACACATAACTGTGGTTTCATGCATTTGGTAT VV]VYYS\[]RP]]]ZY]]]]]]]]]]]]XUY]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:31A17 +853_1366_1495 77 * 0 0 * * 0 0 AACCATAAGGCGCTAACCACAATCGGTGACACCGGCTCCAAGCTTAGCCA ?;<9)6)&'&;+22'80:-%:&/3.<&)0(;):69;#)67;(8+&<-'%8 853_1366_1495 141 * 0 0 * * 0 0 CTTGAAACGGTACCAAAACCAAAGCGCAACCCTGTCCCGTAAATTTATAT AA;>9>>:<<::?8;>7:>597<>/@6=:8>9=A/:;>:;/9==92/819 -853_1366_1495 77 * 0 0 * * 0 0 AACCATAAGGCGCTAACCACAATCGGTGACACCGGCTCCAAGCTTAGCCA ?;<9)6)&'&;+22'80:-%:&/3.<&)0(;):69;#)67;(8+&<-'%8 -853_1367_802 137 chrM 1422 37 49M = 1422 0 ATTCATAGGTAGAGGTGAAAAGCCCAACGAGCCTGGTGATAGCTGGTTG ]]]]]]]]]]]]]]]]]]]]]][]]]]]]]]]]]]][]]]PEY]]]]ST XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:4G44 853_1367_802 69 chrM 1422 0 * = 1422 0 GTTGTTATAGAACAGTCAACCAGCACTGTCTAAGTGGATTTCCGTGGCGG =<?;$%&<<&(5>='(3><+648A+*:<@#46><#70<>#*.<3237=;% +853_1367_802 137 chrM 1422 37 49M = 1422 0 ATTCATAGGTAGAGGTGAAAAGCCCAACGAGCCTGGTGATAGCTGGTTG ]]]]]]]]]]]]]]]]]]]]]][]]]]]]]]]]]]][]]]PEY]]]]ST XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:4G44 +853_1382_1227 73 chrM 682 25 49M = 682 0 GCCTATATACCGCCATCTTCAGCAAACCCTAAACAAGGTACCAAAGTAA ]]]][Z[\][ZZ]]\XY]][[YY]]][]]UVRQ[[\TSXUVILYPKHS] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:42G6 853_1382_1227 133 chrM 682 0 * = 682 0 CTTGTCCTCTATCATACCAATCTAACTCGACCTTTAGTCTCCTCTCCTCT <;:99:98::8:#5:;:(7:6<#8<6:%0<89,5944,8:9:4/020*), -853_1382_1227 73 chrM 682 25 49M = 682 0 GCCTATATACCGCCATCTTCAGCAAACCCTAAACAAGGTACCAAAGTAA ]]]][Z[\][ZZ]]\XY]][[YY]]][]]UVRQ[[\TSXUVILYPKHS] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:42G6 +853_1383_1269 77 * 0 0 * * 0 0 GGGTGCTGCTGTCTCAACGGGCTGAGGGATAGCTGGTGGGAGCCCTTACC ,@)':/)>6:(*'*9&';-(:),4((/,#31;7&/532*8,5:5*75,+1 853_1383_1269 141 * 0 0 * * 0 0 CTATTGACCAACACAGTTCAAGCCAATTGAAATTAGACTCCCCAGGCGTT /))3(<(152,3),<8:2)37;.6/&7$)1/,$0'%4$3&74).0&0%13 -853_1383_1269 77 * 0 0 * * 0 0 GGGTGCTGCTGTCTCAACGGGCTGAGGGATAGCTGGTGGGAGCCCTTACC ,@)':/)>6:(*'*9&';-(:),4((/,#31;7&/532*8,5:5*75,+1 +853_1395_1324 77 * 0 0 * * 0 0 ACTTTCGCGGCCAAGGCCTCCTCCCTAGGGCCTTCCCGACCCGCTGCGGG )9-',&9*3)9',(1%6%7/4681)11&+:-1/4205()&3',,+$0#%% 853_1395_1324 141 * 0 0 * * 0 0 TAAGGAACCGCTCAACACTTATGGACTCGATCGGCCGCCGTGGTTGAGCC 4*,19./*)96*83;4,/1,)'27)2082,,'*6(&)&*%(*3422-+1+ -853_1395_1324 77 * 0 0 * * 0 0 ACTTTCGCGGCCAAGGCCTCCTCCCTAGGGCCTTCCCGACCCGCTGCGGG )9-',&9*3)9',(1%6%7/4681)11&+:-1/4205()&3',,+$0#%% -853_1396_1014 137 chrM 13417 37 49M = 13417 0 CCAAAAATCAGCATCACTTCTACTAGACTCAATCTGACTAGAGAACATC ]]X]]]\Y]]]]Y]]][]]]][]]]]\]]]WR\]]YX]]]]]]]]QO]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:42A6 853_1396_1014 69 chrM 13417 0 * = 13417 0 GGTCCCCTAGAGTGGGGCCTCGAACCTACAGATATTGAGTCGGGAGCCCG @<@:===?<;==98<:9>9:=:;@;:;=68::<:::;>:::><<863>9; +853_1396_1014 137 chrM 13417 37 49M = 13417 0 CCAAAAATCAGCATCACTTCTACTAGACTCAATCTGACTAGAGAACATC ]]X]]]\Y]]]]Y]]][]]]][]]]]\]]]WR\]]YX]]]]]]]]QO]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:42A6 +853_1412_1664 89 chrM 2467 37 49M = 2467 0 TAATGGTGCAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAAAGTCT WKT\NDIZ]NMRMTZ]]JH,/NDHHV]TTE>RZ]]XMVVSJJZMRYY]! XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 853_1412_1664 181 chrM 2467 0 * = 2467 0 TATACGACGAATCATTAGACCTCGGGTTGTGTTCAATTCCTGTCCAGATC (&&&1.)0&1,&$31'.$1-&)#13,*%)+,'$/4,$$*/,5,765)545 -853_1412_1664 89 chrM 2467 37 49M = 2467 0 TAATGGTGCAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAAAGTCT WKT\NDIZ]NMRMTZ]]JH,/NDHHV]TTE>RZ]]XMVVSJJZMRYY]! XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1413_877 77 * 0 0 * * 0 0 GACGGTCGTCCCTATTGTATTCGTCTCTCCGTGTCGTGACGTTGCCCGGT &)#*648#,9(.#3&&(#9.2,#/%3)#&555#).%3#19-4#4'3,#2+ 853_1413_877 141 * 0 0 * * 0 0 AGGTCAGTTTCCAAGGTGGGGGTTGGCATTACGTACCATTCGATTAGATT ?A?<<;A><?;A=<;;>856/>#%###&###%####&&###$$$&#%#$$ -853_1413_877 77 * 0 0 * * 0 0 GACGGTCGTCCCTATTGTATTCGTCTCTCCGTGTCGTGACGTTGCCCGGT &)#*648#,9(.#3&&(#9.2,#/%3)#&555#).%3#19-4#4'3,#2+ +853_1437_116 77 * 0 0 * * 0 0 AGCTGCGGCAGCCGAACACGGCACAAGGTTGGATAATCACCGGAAGTGGA $;,)42'#2(#&,,#%#2,2%,',42#$))#*428#%$2.%$%4%*#)%& 853_1437_116 141 * 0 0 * * 0 0 CCCAAACCAGGCTCGTCCCCTTTAAGATAGTCTCGCCCCCCCTCAACTTG 6>>9;<@7=::=:>=544=54#'8&5-2)#(*)4,&%+#',2-&+&0-*2 -853_1437_116 77 * 0 0 * * 0 0 AGCTGCGGCAGCCGAACACGGCACAAGGTTGGATAATCACCGGAAGTGGA $;,)42'#2(#&,,#%#2,2%,',42#$))#*428#%$2.%$%4%*#)%& 853_1437_1533 117 chrM 9411 0 * = 9411 0 CGCAATTAAACTTAATGCGACATAAATAGCGGCATCGGACCTCCATACTG #%*(4-#(4%$#$&4+*2586;9A<89:><5=?>;=?>=:<=8>>:?<@> -853_1437_1533 153 chrM 9411 25 49M = 9411 0 TCTATTGATGAGGATCCTATTCTTTTAGTATTGACCAGTACAATTGACT ]]]]]VV]UY]][]]VX]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:1T47 +853_1437_1533 153 chrM 9411 25 49M = 9411 0 TCTATTGATGAGGATCCTATTCTTTTAGTATTGACCAGTACAATTGACT ]]]]]VV]UY]][]]VX]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:1T47 +853_1486_1272 89 chrM 9431 23 49M = 9431 0 TCTTTTAGTATTGACCAGTACAATTGACTTCCAATCAATCAGCTTCGGT NHVQR]SN\][RQO@MTMYUVVT]SU]]OJYYXVSSKOSSTRS]]XUOU XT:A:U CM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrM,-9432,1S48M,3; 853_1486_1272 181 chrM 9431 0 * = 9431 0 ACTATGAAAAGCCTCCCGACGCAAGAAAGCATTCACGATATGGACATAGC 22%-,))%99<168=961#151,#/9(3%89/76:7)55965689<<7(7 -853_1486_1272 89 chrM 9431 37 49M = 9431 0 TCTTTTAGTATTGACCAGTACAATTGACTTCCAATCAATCAGCTTCGGT NHVQR]SN\][RQO@MTMYUVVT]SU]]OJYYXVSSKOSSTRS]]XUOU XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_1487_496 77 * 0 0 * * 0 0 TTTATTACGGGCGACGAAACGAATGGTATTTCCCTTGCGTTTTTCGCTTG <,'+856638:)0*.,+&.;7&1+;5-&1779<0:+3)/&+;1&,7()(( 853_1487_496 141 * 0 0 * * 0 0 GTCGCACCCCTCCTAAACCCCAGATCAAAAACTGCACCCGCGACCCACTC 6969=651<=::86774;7:<9=/69>0366/8,,8=:</6&31(3,/&) -853_1487_496 77 * 0 0 * * 0 0 TTTATTACGGGCGACGAAACGAATGGTATTTCCCTTGCGTTTTTCGCTTG <,'+856638:)0*.,+&.;7&1+;5-&1779<0:+3)/&+;1&,7()(( +853_1488_605 77 * 0 0 * * 0 0 CCCGTAAGGAACGGGGATTAGAAGGATGGCAGGGGAGTGGAAACGAAGGG (%/)'(32+'))1*6776&2%)8&,7)71'2&$5+%))724&0)$('&(' 853_1488_605 141 * 0 0 * * 0 0 TCGCCGCCAAACGATGCACTAATTTGCTTACCGGCCAGGCACGGATCGAA 0)&)&1)/1(6)&(+),1=/*&&(&41,',)&1/(/,9/)1//<)&:15, -853_1488_605 77 * 0 0 * * 0 0 CCCGTAAGGAACGGGGATTAGAAGGATGGCAGGGGAGTGGAAACGAAGGG (%/)'(32+'))1*6776&2%)8&,7)71'2&$5+%))724&0)$('&(' -853_1489_374 137 chrM 14307 37 49M = 14307 0 CCTAATCCTCCAAATCCTAACAGGCCTATTCCTAGCCATACACTACACA ]][NR]Z]]]]]]]]YXWQY]]WZ[\]]]PT]]]PU]]]X[]XR]]]]\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:16T32 853_1489_374 69 chrM 14307 0 * = 14307 0 CTCTTCAAACTGACAGCGCAATGGATGAGGCCACAAAAAGAAACTTTAAA >8786=:8:3:2;;;6(=99.3=5*/,%'(+#7121074(25$0,+%,27 -853_148_1347 133 chrM 14085 0 * = 14085 0 TAAGGCCCGTGCCGGTCCGTCCAATGATATTGGAGGAGTTCCGGAGCAAG A=;@>>?=@@A@?A@>@A@=9?9<A@;9>>>>>7;=8<=;8;?;18?62= -853_148_1347 73 chrM 14085 37 49M = 14085 0 ACTCAAAATAAACACAATATATGTCATCATTATTCCCACGTGGAATCTA #$]]]]]]]]]]]]]Z[]]]][V\\[]U\[Z]KQ]YOQW]]QUYWWZTQ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_148_1509 141 * 0 0 * * 0 0 TGAATGTAAATTAAACGGGAGGAAAAATCTCCCCACAATTGAGGCCTTCC ./<&1=35>,/3(6,,1<3*)7,53)69<&(A<8+(;91).8&+7(:&<7 -853_148_1509 77 * 0 0 * * 0 0 GCTGGGTGAAAAGGCCCCGGCTTCACAGAATGTAATTTCTAATAGTCTTT -'-:+&1.,)&&=(=)?7=<=4&,>:(;,&<))))8)+(,'&(4&,(,3) +853_1489_374 137 chrM 14307 37 49M = 14307 0 CCTAATCCTCCAAATCCTAACAGGCCTATTCCTAGCCATACACTACACA ]][NR]Z]]]]]]]]YXWQY]]WZ[\]]]PT]]]PU]]]X[]XR]]]]\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:16T32 +853_1493_452 77 * 0 0 * * 0 0 CGCTCTCCCGATTCAGCAAAACAAACAAGGCTCCACCGTCCCGGGGCCGA '$),&/'53(%$((6'*'(&+%694&(2.1'&1(3&2'9/%)(&)()'(/ +853_1493_452 141 * 0 0 * * 0 0 GAAAGGACCAAACCAGGAGCATCCACCCATGGCCGCTAAACTAGGAGGAG $*)&'#,,,##(*#'%#%##(#))###%$$$##%###$#)###'#%%(%# 853_1493_1908 117 chrM 14920 0 * = 14920 0 TTGTGGTATAAAGGACACGCCTTGGTGGCCAAGTTGTCAACGTAATCATG ;<<9:=7<;;9<?=<;9<<=<88?>==;?<==;;=><;===:::>?;<@; -853_1493_1908 153 chrM 14920 37 49M = 14920 0 TTCTCCCCTGACCTCCTAGGAGACCCAGACAACTACACCCCAGCTAACC YY[]]ZX]]YYY[]]]]]]][\]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:8C40 -853_1493_452 141 * 0 0 * * 0 0 GAAAGGACCAAACCAGGAGCATCCACCCATGGCCGCTAAACTAGGAGGAG $*)&'#,,,##(*#'%#%##(#))###%$$$##%###$#)###'#%%(%# -853_1493_452 77 * 0 0 * * 0 0 CGCTCTCCCGATTCAGCAAAACAAACAAGGCTCCACCGTCCCGGGGCCGA '$),&/'53(%$((6'*'(&+%694&(2.1'&1(3&2'9/%)(&)()'(/ +853_1493_1908 153 chrM 14920 37 49M = 14920 0 TTCTCCCCTGACCTCCTAGGAGACCCAGACAACTACACCCCAGCTAACC YY[]]ZX]]YYY[]]]]]]][\]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:8C40 +853_1498_1797 77 * 0 0 * * 0 0 CCTCAGCGCCACCCAGCTTGGAAAACTAAACAAACAAATAAACTTTCACT &&&&&#&#######&$##&########$&$###&$$$###$$#$#$#### 853_1498_1797 141 * 0 0 * * 0 0 TGAAGGTCGCATGGCGCGGATTGCACAGCAGATCAACTGTTTCAAAAACA 3=#&&04&',.8#*&-:&.*./$'#);%.$21'0&&/&###4$&%%0$#$ -853_1498_1797 77 * 0 0 * * 0 0 CCTCAGCGCCACCCAGCTTGGAAAACTAAACAAACAAATAAACTTTCACT &&&&&#&#######&$##&########$&$###&$$$###$$#$#$#### 853_1499_1261 117 chrM 2408 0 * = 2408 0 TTTCATTTAACACCGGGAATGGTTCACAATCAATGCCCGAGCAGCACAGT /2&7=)6&?<)/56<9:<9:7&;7<:<9<89;>9A><>>?5<<;=<=:;: -853_1499_1261 153 chrM 2408 37 49M = 2408 0 ATTCCAGAGTCCATATCGACAATTAGGGTTTACGACCTCGATGTTGGAT ]/4ZY]\\QT]KO]]YMXZ[WOMN]]TW]]]\VSYQSSQXVWQT[RY]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1499_1261 153 chrM 2408 37 49M = 2408 0 ATTCCAGAGTCCATATCGACAATTAGGGTTTACGACCTCGATGTTGGAT ]/4ZY]\\QT]KO]]YMXZ[WOMN]]TW]]]\VSYQSSQXVWQT[RY]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1509_820 77 * 0 0 * * 0 0 GCAACCTGACCGTTTACACAACGTGTGGAAAAGAGGTGGGAGAGGGTTGG 18;:.49;5+6/<=879672373=.:;;47$'%06262%562%':5$5&: 853_1509_820 141 * 0 0 * * 0 0 ACAAGAGACTACGAGGACACACTCCGGCCCTAAATCGCGAAAAACGGCCC ',.1438/1)&1*3.18,72875),/*&://.4&),+/#+3%5*)56((& -853_1509_820 77 * 0 0 * * 0 0 GCAACCTGACCGTTTACACAACGTGTGGAAAAGAGGTGGGAGAGGGTTGG 18;:.49;5+6/<=879672373=.:;;47$'%06262%562%':5$5&: 853_1510_448 117 chrM 982 0 * = 982 0 CCGCACCGGGCAGCAGCCAGGAGGATTATGGGGTACCTGATGTTGTTTGT ##$########''%$+'4)%0%34)82'2,(/27/,*:4'2177460826 -853_1510_448 153 chrM 982 37 49M = 982 0 CCAAACATATGAAAGGAGACAAGTCGTAACAAGGTAAGTATACCGGAAG QSZ\WTIO[MGR[]]UO]]Y[WWYTSPY]Y[X]]XZV[]TRU[Z\[Z]$ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1510_448 153 chrM 982 37 49M = 982 0 CCAAACATATGAAAGGAGACAAGTCGTAACAAGGTAAGTATACCGGAAG QSZ\WTIO[MGR[]]UO]]Y[WWYTSPY]Y[X]]XZV[]TRU[Z\[Z]$ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1511_561 73 chrM 1971 37 1M1D48M = 1971 0 CTTCCCAGTATTAGAGGCACTGCCTGCCCAGTGACATCTGTTTAAACGG !!\]]]]]\]ZW[]]QQ]]]Z]]UT[]]]]]]]]]V[]]]SAMXYTTXK XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:1^A2T45 +853_1511_561 133 chrM 1971 0 * = 1971 0 GCAAACCGTTCTGATGTAAACAACGTCAATTTGGGCCTTTACAAAGCGTT ?A===@A?><A8A>:>9;;=@828;'#+99:#'9;;4#>6-1/89,-&45 +853_1511_1886 77 * 0 0 * * 0 0 GGATAGTAGGAACGAGATGCGGGGAACCCGTTTGGTGCTCGGCGGGTGTG :A(>/2;&>='7&>::(1678>>:1&(<::11,.<8,(),8>%8</):(< 853_1511_1886 141 * 0 0 * * 0 0 GACGTCGTCGTCGTCGTCGTTAACCCTAAGGTTCGCGGGACCCCTCAACA 99;<=:>?<;=8;>=;8=<==9:8::==:9,8?:;)0<6.13;+:*5/:) -853_1511_1886 77 * 0 0 * * 0 0 GGATAGTAGGAACGAGATGCGGGGAACCCGTTTGGTGCTCGGCGGGTGTG :A(>/2;&>='7&>::(1678>>:1&(<::11,.<8,(),8>%8</):(< -853_1511_561 133 chrM 1971 0 * = 1971 0 GCAAACCGTTCTGATGTAAACAACGTCAATTTGGGCCTTTACAAAGCGTT ?A===@A?><A8A>:>9;;=@828;'#+99:#'9;;4#>6-1/89,-&45 -853_1511_561 73 chrM 1971 37 1M1D48M = 1971 0 CTTCCCAGTATTAGAGGCACTGCCTGCCCAGTGACATCTGTTTAAACGG !!\]]]]]\]ZW[]]QQ]]]Z]]UT[]]]]]]]]]V[]]]SAMXYTTXK XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:1 XG:i:1 MD:Z:1^A2T45 +853_1530_202 77 * 0 0 * * 0 0 GGTTCATGGCGGGACATGAGGTGCCATACCGCAACCCTCTAGGCTGATCG /9::8:7;58;0<%;;9=(3;8<1;73;16;1=57686/585:30;/<61 +853_1530_202 141 * 0 0 * * 0 0 GGGGACTGAAGAGCGGCCATTAAGGGAGAATTGAGGAGAAGAGATGAGAA ;<;99=:99>6>8:8<?:898A=2<7@88>)6#/+,&)(#,'-%#+-*%( 853_1530_1652 117 chrM 5148 0 * = 5148 0 AGATTCCGGCATTTCAGCTAGTGCCTGCCCAGCCGTATATATTCGGCAAA +$5/5&$4982/;*;5#:3;(%;:;0'<7952:561);57)#<0-%6;58 -853_1530_1652 153 chrM 5148 37 49M = 5148 0 AATTTTAGTTAACAGCTAAATACCCTAATCAACTGGCTTCAATCTACTT DM[\UX]]\V[]]]]]]]]]]Z]]]]]]]]]]]]\]][]]]]]]]]]]\ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_1530_202 141 * 0 0 * * 0 0 GGGGACTGAAGAGCGGCCATTAAGGGAGAATTGAGGAGAAGAGATGAGAA ;<;99=:99>6>8:8<?:898A=2<7@88>)6#/+,&)(#,'-%#+-*%( -853_1530_202 77 * 0 0 * * 0 0 GGTTCATGGCGGGACATGAGGTGCCATACCGCAACCCTCTAGGCTGATCG /9::8:7;58;0<%;;9=(3;8<1;73;16;1=57686/585:30;/<61 +853_1530_1652 153 chrM 5148 23 49M = 5148 0 AATTTTAGTTAACAGCTAAATACCCTAATCAACTGGCTTCAATCTACTT DM[\UX]]\V[]]]]]]]]]]Z]]]]]]]]]]]]\]][]]]]]]]]]]\ XT:A:U CM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrM,-5149,1S48M,3; +853_1569_1617 73 chrM 15857 37 10M1D39M = 15857 0 TTCAGGGCCATCCCACCCAACCTCGCCCATTCTTTCCCCTTAAATAAGA ]]]]]]]]]]]]]]]]]]]]]]]]WX]]]\Z[]]QO]]\OQUSWMNK5I XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:10^T39 853_1569_1617 133 chrM 15857 0 * = 15857 0 TAATTGTATATAAATGCTGCATGCCGGGAAATTGTGCAGCTACGTGGAAG <A@=>?><<>=@@?=@?;=<=<9A<==;AA>;57:<?<;75>67695@:6 -853_1569_1617 73 chrM 15857 37 10M1D39M = 15857 0 TTCAGGGCCATCCCACCCAACCTCGCCCATTCTTTCCCCTTAAATAAGA ]]]]]]]]]]]]]]]]]]]]]]]]WX]]]\Z[]]QO]]\OQUSWMNK5I XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:1 XG:i:1 MD:Z:10^T39 +853_1570_1472 77 * 0 0 * * 0 0 CACCGGGACTAAATTAGCTTCTCGTTCCAGGCGCATCGGACTCACGTTAT @A=?<A?@?A=9=AA=@=;>?>?<@=><=:<@9=,A?;<<7<=61;>9/? 853_1570_1472 141 * 0 0 * * 0 0 CGACGCACGTCCGCAGGTACCAGGAACGTCATCCGTAACCGCGGGCACGC <=<>==;=:@>@<@==AA?A@>A?@<@?=A9>@?;>=9?<9>A>><3;=7 -853_1570_1472 77 * 0 0 * * 0 0 CACCGGGACTAAATTAGCTTCTCGTTCCAGGCGCATCGGACTCACGTTAT @A=?<A?@?A=9=AA=@=;>?>?<@=><=:<@9=,A?;<<7<=61;>9/? -853_157_314 141 * 0 0 * * 0 0 GATAGCAAAAAAAGGGGCCGAGCGCAAAAGCCGACCTGAGCACAGACGAA 9;:5461242#)#*1####('$$$##'#%#'$$%###/$%($#'#$$#+# -853_157_314 77 * 0 0 * * 0 0 CTCGCCTGGAATTTAGCCATGGCTATGTTCTAGGTGCTTTGTTAGTTGCG 79();(1<))&2(5+&8&+.9-'198,',))&&7&:*,4)(6&2&/:&77 -853_157_582 117 chrM 893 0 * = 893 0 ATTTTGATATTGCCTAAGCCAGGAGGATTATGGGGTACCTGATGTTGTTG 2&==93398<:46<@<:?:==6>:<<<=?=>;;<;A;;:>;;><::??:= -853_157_582 153 chrM 893 37 49M = 893 0 GCTTAATTGAATCAGGCCATGAAGCGCGCACACACCGCCCGTCACCCTC O/3]Y[12]PSUUY\]XXYZ\VY]]]]]]]]]]]][]]]]]]]]]]]\\ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1585_323 73 chrM 8665 25 49M = 8665 0 TTACCACATAGTAAACCCCAGCCCATGACCACTTACAGGGGCCCTATCA #"]\X]]]]]]]\]]Y[]]]QO]]\PPYZ]\Y\WXULU]PDPYVVSIQ\ XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:39A9 +853_1585_323 133 chrM 8665 0 * = 8665 0 CAAGGGACTATAACTGAGGGGTGTGGAGCGGTTGGTTGGCCAGCGCATTA <;:>?<0<;;=;9781&(,95'+$-+2#,#'',1',$,$1/5+#2)6%&( +853_1585_2023 77 * 0 0 * * 0 0 AATAAATATTACCATTTAAGAAGGAATACGAAAAGACGCCGGCGTCCACT :A=>5#:==<+=<==)=?<=&<=<>%<<?;)<=<=#>9<:$<;;:&?3<5 853_1585_2023 141 * 0 0 * * 0 0 AGGGGGATGCAGGCAAGACAAACGGCACGGGCGTGGGGAGAGGTCCCAAG ?>@A>=44@@8<5A<7>:=?577<?867=>4588>:;88<59;<=:;)9= -853_1585_2023 77 * 0 0 * * 0 0 AATAAATATTACCATTTAAGAAGGAATACGAAAAGACGCCGGCGTCCACT :A=>5#:==<+=<==)=?<=&<=<>%<<?;)<=<=#>9<:$<;;:&?3<5 -853_1585_323 133 chrM 8665 0 * = 8665 0 CAAGGGACTATAACTGAGGGGTGTGGAGCGGTTGGTTGGCCAGCGCATTA <;:>?<0<;;=;9781&(,95'+$-+2#,#'',1',$,$1/5+#2)6%&( -853_1585_323 73 chrM 8665 25 49M = 8665 0 TTACCACATAGTAAACCCCAGCCCATGACCACTTACAGGGGCCCTATCA #"]\X]]]]]]]\]]Y[]]]QO]]\PPYZ]\Y\WXULU]PDPYVVSIQ\ XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:39A9 -853_158_402 141 * 0 0 * * 0 0 TCACAGACCCGAGGAAGCTTCGTATATTTGCCACTAAGGGCGTCGGGGGA 5;&35,<55<8<6;<3646:618477::95<92=752071+2339-.#11 -853_158_402 77 * 0 0 * * 0 0 GGTTGTTAAACCGTCCCGGGCGTTATCCACGTGTGATACCCGCGCATGTG 711&$(-)##.,&((&(4('83><-:94,'.;2&*:<0%&7,3#+02#(# -853_158_569 137 chrM 6195 25 49M = 6195 0 ATCCATTGGCTTTCTAGGCTTCATCGTATGAGCTCACCACATGTTTACA $]\YYYQM\]\WX]\\MN][YQS[\WS\YV]]VV]]MFY\]XPSV]SGL XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:30G18 -853_158_569 69 chrM 6195 0 * = 6195 0 TTCGTAATTATATTTGTCGGGCATTATGAGTACGGAGGTTATTATATAGG 8>34:8.56,9/7<=-80.562,994:)3,<#%85(,#7&%,'#3#,#%& +853_1603_500 89 chrM 13884 25 49M = 13884 0 CTCAGTAGCTATAGCCGTTGTATAACCAAAAACAACCAACATTCCTCCC ,T]YOQSTUSUY[\XU[]]ZZTY][]]]]]][\]\]]]]ZVX]WZ]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:9C39 +853_1603_500 181 chrM 13884 0 * = 13884 0 AACAGGCCGACTTTGGTCCAGGGGAAACGTTTGGTGACTCAGAATAGGTC %/06321266(/.:504#:7(&,9:39544<<8<95<2>:8<8:=87:<: +853_1603_1995 77 * 0 0 * * 0 0 CCAGGGAGATCCTAACGTGGAGCCGCGAATACTCCCAACCACCTATACAG :;;;>=<9A==;9:=;6::?:9@<@:8<<;:6><@<<9;@595:684279 853_1603_1995 141 * 0 0 * * 0 0 CTGGTACCGGTATGAGCCTAGGATAGAGCGGCAACTCTTATACTGCCGGT 9=:8;>>=<==<<>=AA@><A><<=?>?=<<??<<;?;;?<86=<9?=3; -853_1603_1995 77 * 0 0 * * 0 0 CCAGGGAGATCCTAACGTGGAGCCGCGAATACTCCCAACCACCTATACAG :;;;>=<9A==;9:=;6::?:9@<@:8<<;:6><@<<9;@595:684279 -853_1603_500 181 chrM 13884 0 * = 13884 0 AACAGGCCGACTTTGGTCCAGGGGAAACGTTTGGTGACTCAGAATAGGTC %/06321266(/.:504#:7(&,9:39544<<8<95<2>:8<8:=87:<: -853_1603_500 89 chrM 13884 25 49M = 13884 0 CTCAGTAGCTATAGCCGTTGTATAACCAAAAACAACCAACATTCCTCCC ,T]YOQSTUSUY[\XU[]]ZZTY][]]]]]][\]\]]]]ZVX]WZ]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:9C39 -853_216_501 141 * 0 0 * * 0 0 CTTTTAATGGGTCCCTCTCTTACAAGGCTCTGTTAATTTTTCCTTTCGAA 85<85,7=47;:627;<6<4<::445934*:5<2)$9&-$273#/#6-.* -853_216_501 77 * 0 0 * * 0 0 CCCTGGCCGGTCGGGTGCGTCACGCGCCTGGCGGAGCTCCTAGCCACGCC />61=+11:/5/+/(&/1'%#:3&;&93(';0$4&*9,&/+))2')65.& -853_216_648 117 chrM 1235 0 * = 1235 0 CGAGGCAGCCCATTGAGTTTGGTCCCCCTTAGTTACAGGATTTCCAGCCG +&'%(14'2,09:7(776;53=99/58>75;88784;/:8)884;7/;6/ -853_216_648 153 chrM 1235 37 49M = 1235 0 AAGGGAACGATGAAAGATGTATTAAAAGTACTAAACAGCAAAGCTTACC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]SU]]]YY]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:19C29 -853_218_1907 133 chrM 1146 0 * = 1146 0 GAATGGCTTGACAAAGGGAGAAACGCATATCCTGTGATGTTATTTAAGAG 5).5<9?642>9+;9<;;:28=4886909479&7,3;&#9+:,6'5,(&/ -853_218_1907 73 chrM 1146 37 49M = 1146 0 TACCCTTAGTCACTTAACTAAAACATTCACCAAACCATTAAAGTATAGG YQOTRVYOS[\Z[XX]\YOS]XW]]\Z[X\ZUZWZ\XVVZQPMKWTUJ> XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_219_184 141 * 0 0 * * 0 0 CAGTAGTTGCATGAGTCATGAGGTTGGGTTGTTGGCAGCTGTTGTCGGCT '*)%%,,##3,1+,,#'&)#+#/-),%(&+$)%#%$&(&/#&(#%#'$%$ -853_219_184 77 * 0 0 * * 0 0 GCATTTGCGACCATTTTGGGGTTGGTGGGGTGGGTGGCCGGTGGGTTGGG /&3&,)/,$)/&)2&#%(:/+#,*&$+$$(&1)/&+1##'&'#-,)&'%- -853_233_615 141 * 0 0 * * 0 0 GCCTTAAATCGATATAGTCGCGGGCCCCAACCGGGCCGAGTACACTGGGC ;@),<%8)(&<(0)<&<)&53.*%/,5,6*/6;.)+>,%.,7,#,,*$%$ -853_233_615 77 * 0 0 * * 0 0 TTATGGATTAAATTTTAGCTAATTTGGCCCCTATGGATAAGGAATCCCTA (7.1:154753447,222383647814041,3+,4.-/%+21((2)2'7) -853_233_834 137 chrM 8993 37 49M = 8993 0 CCACCCACAGGTATCCACCCCTTAAACCCCCTAGAAGTCCCCTTACTCA ]]]]]]]]]]]]]]]]]]]]]]\\]]]]]]]]]OQ]]VY]]SOVQ\]YS XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_233_834 69 chrM 8993 0 * = 8993 0 GGGAGTTCTAGTGGAGAGATTATTCGCCGCCAGCTGCGTTGAGAGATGAA =<<=;><:6:;<<3>=:=8>><<8;<=63;>99099&%,##&'2##%/$% -853_244_474 141 * 0 0 * * 0 0 CGGACAGAACGAAAACTCCTAACAACAGAGCTGAGCAAACCAATCCAGCC *$(5.+###%$$2*+'#$('/(#*$$$$0%'$$3',$(*#&'4(%$#/$$ -853_244_474 77 * 0 0 * * 0 0 GATTGAGAAGGCTGCAAACGGCGAACGACCGGGCGGCCTAAAACCACGGA )15$&/&*,&,,(&&0.,&,07:)/1/4&))96&)'/&''.(+&1'&)'' -853_244_781 117 chrM 652 0 * = 652 0 GCAGCCACGAATGTCAAAATCTGGACCACTATACGGTGTCATAAATTCTT &24)57:,,<=892<?=>;9>989@=;>;:?7><<>;=7=86>>;:9><8 -853_244_781 153 chrM 652 37 49M = 652 0 CGATAAACCCCACCATCCCTTGCTAATTCAGCCTATATACCGCCATCTT ZOE[\XROW[]ZQJW]I?T]]][]]]]Z]]][Y]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_255_146 141 * 0 0 * * 0 0 GGGAAGAGCCAGGGAGGACTGGGGCTGGAGCAAAAGAGGCGAGGGGGGCG #$##$%###&##'#&##$###&#&$######$####%%$$/$'%$'#$$# -853_255_146 77 * 0 0 * * 0 0 CCTATGTCCCCTGACGGCACGCCGGGTCACCGAGCCGGGCCGCGCCCGCC 5.)8&)'++7:',%'&&,(1)1/8'('%1)20#%,4-$.&$''(1(0(/7 -853_255_403 117 chrM 13900 0 * = 13900 0 ATCCTCAGCACATAAGTGCGTGATTACCGATTGTATCATCGCTCGGTTGT 130>7&9+9:-83?<09=>;85?>=78;<<=99;>)87;>;9;=>?<:8< -853_255_403 153 chrM 13900 37 49M = 13900 0 GTTGTATAACCAAAAACAACCAACATTCCTCCCAAATAAATTAAAAACA 7FFGW]]]RIS\]]YT\]SMKT\TW[\\]Z[]]]]]]][[]]YZY]]Y\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:41C7 -853_256_428 141 * 0 0 * * 0 0 ACGAAGCGGTGTACCTGGCCCTACGCGGAAAGGGGGAAACCTTCCCAAAT @?8<A:A969=<:71?;;<5==>81><1<&??:264@>>/=<-819><() -853_256_428 77 * 0 0 * * 0 0 TAATTCAAGCAGATAAAAGAGTGTGCGCCCACCCTCCAAGGAAATAGAAA 2=<66<=>6::3<,8;>:3<3825,:1:98897,057::24<986:+,:: -853_256_834 117 chrM 9813 0 * = 9813 0 GCCCTCTGGCAAACCTACGGTAAGTTTGCCATGGAATCTTTGGCGACATT ######$$##############$#&####$&$##&##########)#&%' -853_256_834 153 chrM 9813 37 49M = 9813 0 TGAACCCAAAAAGGGCTAGAATGAACTGAGTATGGTAATTAGTTTAAAC DL]TAFU]\TDH]]]WZ]\NU\VZVU\]]]Z]]Z\\Z]]]]WZ]]]WWX XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:14A34 -853_266_1092 141 * 0 0 * * 0 0 GGCGCGGATTATTGTCTTAGCTTTGCTACCGTTATATGCGCTTGTCTTGT ,318925,37;9,999<52622989/:7220#3$247,',*1'##,1,#5 -853_266_1092 77 * 0 0 * * 0 0 GAGCCGGAACGAGACAACCCGTTCTTAACATCCACCACGCGTGGGCGACG ;)2))/8%'10:712<67<3(39</68/5)6&')/170&49)6)//,)&& -853_266_697 181 chrM 1002 0 * = 1002 0 CAAGTCCACTTATATATGCGCATCGGGTTTTTGGTGGAAGGTTGTCATGT ::<;9796:::;9;;;<4>=2=;<;?=>?=;==?><6;:<:<>=@>;<=? -853_266_697 89 chrM 1002 37 49M = 1002 0 AAGTCGTAACAAGGTAAGTATACCGGAAGGTGTACTTGGATAACCAAAG ]]]SQVY]]\]Y[ZY][]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]# XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_279_1056 141 * 0 0 * * 0 0 TGGAGGGTACGATTAGAAGAGGAGGCGGTACAAATAGACAATTCCTCACT =<;<<=;><:>;=<<=>=:<<>=;<;=;<==8<87<7@8=<9<9;:1:3: -853_279_1056 77 * 0 0 * * 0 0 TGTGCTCTTCCGTCATAAGAGAACCTTAAGCTATCACGGACACAGCGCCG :;76;:=;:<7::;<<<3<76;:<9=<5;87=3<=5@3<7388771:;5< -853_279_1330 117 chrM 8561 0 * = 8561 0 CTTTTTCCTTCCCTTGCTTCGGTGAGCATGAGTTGCCTTCCGTTTTTTAT 7%,117%%154#2639#1#,5'+)23%($$1#$#1<$&>-<-'9)4).<+ -853_279_1330 153 chrM 8561 37 49M = 8561 0 AACTATCCTCGAATTCGCAGTAGCCATAATCCAAGCCTACGTATTCACT JI[VXUU]]][\]]]WW]]]]\]]]]]]]]V]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:24T24 -853_292_158 141 * 0 0 * * 0 0 AACTTTTCTGGCATTTGAGCGCGTTTTGGAACTGACGAACAGATGCTCCT ===9<<;<=<<>:<:=<>::7=9<=:;9:>;;98=58>;>4=@;:,;=1= -853_292_158 77 * 0 0 * * 0 0 AATGTGCGTTTAAATATTCGGTCTTGGATGCTGATCAGCTAAAACGTATG ;=;;9;>>89=><94<;>9:;:896;;<8;3<<177=:5<6=:73<:9'9 -853_292_700 117 chrM 2055 0 * = 2055 0 CCCCACCACACCAGCCCCCCAAGCTTATACCCCGTACTCTCCTCATTACC 5.&/,#/++%):4'*/66:/.<6:82<6715=74+&>;<8:;>;=9<;9= -853_292_700 153 chrM 2055 25 49M = 2055 0 CACTTGTTCTCTAAATAGGGACTTGTATGAATGGCCACACGAGGGTTTT U[XVKS\MRZS\]ZTXZX]WT[[]]]ZUUT]]]]WVZ]]]]]]\ZUU\& XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:9C39 -853_33_1583 141 * 0 0 * * 0 0 CCCGCGCTCCCGATAATATAATCACCGAAACACGAAGACCAACAGGCCCA ),+&#,)',$##2$),%2'+#$)2),#$(+#+##&*%(-%1%#(##$$2, -853_33_1583 77 * 0 0 * * 0 0 TATGTATTTCGGTACCGCACAGANCACTCCAACCCGATAGCGTCAAGTCC /&2%,)+,+:&#:;,5*)8/%19!,%*1/%;#<952%:27#%%&4.,#-1 -853_33_1649 117 chrM 7331 0 * = 7331 0 TCACCTAATCTGCATGCAGCTCTGTCNTCATGTAGGAGTTAGAACGAAGC %1.)#$$1%%$)#)$&);=1968:42!:8<:78;888<6688=<<9<:9< -853_33_1649 153 chrM 7331 37 49M = 7331 0 TCACAGTCAAAACAATAGGCCACCAATGATACTGAAGTTACGAGTATAC XNT[[[YTQXUVKHX[]ZMOZ]SV]X]\Y[\ZVRTZ]][Y]]VNQUWSU XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:37C11 -853_34_1182 141 * 0 0 * * 0 0 GGGAACATTATACGGCTTTCGCCCCCTAGACCGCACTGTGTTGGGCCGTT >>>:9<<>><;58987;::9718859:2;75'3%(720&14%6(,51-&& -853_34_1182 77 * 0 0 * * 0 0 GTTAAGGGTGTTAGGGAACCCTANAAAGCCCGGGTTTCGTGGGGGCGGGC ;7;5*982;:/;,46::69<4<(!4295.6144&::<4*.-+%$#.#,(# -853_34_1358 117 chrM 7792 0 * = 7792 0 CGCCTCGAATATTGCCCTCAGATCAANACTGTTGACCCTCGGGCCAGGCC 9/8<9;6:<8=,>=<<;=<<9:><>:!9;@=:>?<=>><=>>?<=;??<< -853_34_1358 153 chrM 7792 37 49M = 7792 0 CTCCCTAGTGATATGCCACAGTTGGATACATCAACATGATTTATTAATA MV]YU]YXXTZ]ZY\]]]][]]]]]]]]][[]]][WX][Z]]]]]][[] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_35_596 133 chrM 477 0 * = 477 0 GGCTCCTATTTTATTACGTGTCCTTCTCAAACTGACAGCGCAATGCTAAG >978>8=9;>;:2>;;85=3;::=;::7:8:68)<5;859>?<>:<6<58 -853_35_596 73 chrM 477 25 49M = 477 0 CGATAGCTAAGACCCAAACTGGAATTAGATACCCCACTATGCTTAGCCC !SSNPYYYUQPS\VSSRPPZ[Z!!NXX\VXLL]]XUMKXYRTRKLV\Y! XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:22G26 -853_35_669 141 * 0 0 * * 0 0 TTCTTATAAAACCGCTTACCCCCTAGGTCCGAACATCTTGCAGGGTCTTG ,)&#<&38':&)-2/*4-'*+,5:0(3(+.+&,)9,&%1%*'(+.+-&&' -853_35_669 77 * 0 0 * * 0 0 TTGTGCTGTCACGGCAAGGCGGGNGAGTTGGTGCGGCTACTCTCATCTGG #4(,,&5,'-2(&5'10&)&-&3!,)+.*9&););:,8)7&3<&,/1:)& -853_365_1447 117 chrM 5643 0 * = 5643 0 ACCATTGGATTAGGCAGCCGTGGGGCATACTCATACGGTCTGACAACCAT $###$#$#(##&$&#8$277:3079<60;993;8;5+97=7)9:;:(7<6 -853_365_1447 153 chrM 5643 37 49M = 5643 0 TCCCCGAATAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTA NJUSYMK[RT[XXTY\ZZOT]]]XX\Z[XY]]]]]]]]]]]]]]]\]][ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:0C48 -853_365_890 141 * 0 0 * * 0 0 AGAAGTCCGGGCGTAGTGTATCCGAGGGGCAAAAACTCTAACAACGGACT =9?=>7:9;A=9==??:<8?<=9@6<:>>8<?=>:=6:=<?8;<398:8) -853_365_890 77 * 0 0 * * 0 0 TGTGGGGGGGGAAGGGCGTCCGGCTAACGTCTCGGCGGGTGCGGGGGGGG <:7:=<;;;<9==><<;9<>:;>>;:;7<;<68(-#6+1&5,(4'2'.*2 -853_368_1718 133 chrM 1149 0 * = 1149 0 CTCCCCTCTCAGCTTGATTCCAAACGCCGGGATCTAAGGGTAATGTTCCG ;;A>A>?A;@@<><9A;6:?A:=1><<A@6=5515A<>8397:@1<6<3: -853_368_1718 73 chrM 1149 37 49M = 1149 0 CCTTAGTCACTTAACTAAAACATTCACCAAACCATTAAAGTATAGGAGA (]Z\]SR]]]\Z]]]]]]]]]]]]]]][]]]]]]]V]]]WW]]]SO[[X XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_369_74 141 * 0 0 * * 0 0 GGGTTCAAGCATGGGAAGTGGACCACAGCTCCCGACGGTCCACACCATCA =9756::884:54:791:47358965758589965&:94,&969;(5143 -853_369_74 77 * 0 0 * * 0 0 AGCCACGGATCAGAGGGGGAACGATGGTATAGGAAGGGATAAGTCGGGGA 7:9875:8:7<69;78.$2/9&)6%0-$5)96&879'$8,&(/))6*2&( -853_375_367 141 * 0 0 * * 0 0 GTTTTTTGGCGCGAGGTTTGCGCAGAAGGGCAAATTCCGGCAGCGTCGCG 5&')&(9<1,=?>:+,)6)&7,&(05/)1,',(0'&),&(6/7,,5,,44 -853_375_367 77 * 0 0 * * 0 0 CCGATTGTCTTTCTGAGCGCACCGAATCAAGGTATCTACTAGCATAGCAT '+);,18&&&''),2&))4,%/1&5.1+-'/,'-1()))&'*)'+)&/&) -853_375_856 137 chrM 883 37 49M = 883 0 AGAATAGAGAGCTTAATTGAATCAGGCCATGAAGCGCGCACACACCGCC ]]]]]]]]]]]Z]]]]]]]]]]]]]]]]]ZTV]]]]]]]\[]]]][]UQ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_375_856 69 chrM 883 0 * = 883 0 GTTTACTTGAGTACATCCTCAAGACTGTCTTATGCCGAGGCTGCCTTTGA 8<;;>??83=>;63:@:?9=@<=>8@:?5?>8=1?;98;9<>4&40&2(% -853_381_1334 181 chrM 556 0 * = 556 0 CCCCATCATACCACATAACACCACCAAGGCTCAAGGTGTCTTAATACCCA *%-#&2+,%&#2'%#,&%&.%7;';=?>%=<?>68:?@,;=?>%)4@>=@ -853_381_1334 89 chrM 556 37 49M = 556 0 ATTCGCCAGAGTACTACTAGCAACAGCCTAAAACTCAAAGGACTTGGCG WLNHN\]]]]]]]]]]]]]]OJ]]]]]]]]]]]]]]]]\]]Z]]]]]]' XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_381_1648 141 * 0 0 * * 0 0 AGAAACGATCACAAATAACCCAAGTCTCGCCAAGAGAGCTTGATCCGAGA 8:9:;<;::::;65&:178(:8:517:35$3385)958.$<578%7:7.) -853_381_1648 77 * 0 0 * * 0 0 TTGCAGACTAGTTTCCAGGTATATTTTTCAAAGCCTTATTTTCTTTTTTT 986+0<95:8;(>5<<)58?,4)8;<5&,9/),()35)-3&7(&832$&/ -853_383_1666 141 * 0 0 * * 0 0 AACCACTGAGTACGTAGGCGGTGCAACCGAACCCCGAGTATTACCTACTG 18$+&,#./,8#8('./99#4(58);.22,;,2,%6,%)(,.,*957)(' -853_383_1666 77 * 0 0 * * 0 0 AGCGTCTTACAGACCCAACTTGAAGCTTGCAGGAAGGGGCAAACCAAACA ,,('6:.6-&7,(=15&%&<&&1(/16',.(1&&8($$&&+&)76,5815 -853_383_962 181 chrM 865 0 * = 865 0 GGCCAATTATTGCAATGGTATGTTGTGGGGCTGGGGAGGTTGAATCTCTG 5*;3<8)659?)@>?:(99>:7==<?5?;A=:<2>A<;:==<=:>;9??@ -853_383_962 89 chrM 865 25 49M = 865 0 GGATTTAGTAGTAAATTAAGAATAGAGAGCTTAATTGAATCAGGCCATG O\]SGKS[[MJ]]Z10[]WHG]]WQT]]]HI\\YBDWTW]XU\]]VY]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:8C40 -853_389_1983 141 * 0 0 * * 0 0 TGGAGCTACACCATCCCCTTAGGAGGGGGAAAACGTGGGGTGACGTGGCG 715;6741498/6459/6448/6573'569<98845/6:9$),4%.560( -853_389_1983 77 * 0 0 * * 0 0 TACCGTCTTTCGATTGACCGGTCGGTCGGGGGCCGGGTGTCCGGTTCCGG ,&9):88.&'&&/.&4&%4(6#$4531,)66,.2-51#'2/&'5845,8. -853_390_660 137 chrM 1251 37 4M1D45M = 1251 0 GTGCTTAAAAGTACTAAACAGCAAAGCTTACCCCTTTTACCTTTTGCAT ]]]!%\W]]Z]]]]]YW][ZY]]]]WU\]]]\]Y\]]\V]23]]]HFRS XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:1 XG:i:1 MD:Z:0A3^A45 -853_390_660 69 chrM 1251 0 * = 1251 0 CTAAGGCAACGTATTGGTCGCCTTATGGTAATGGTACGTATAATTAGGCT >8A==;<<<>;;A98<;:<=>;9;=;;;;>;8<;;@5;:81=:894;:), -853_392_1916 141 * 0 0 * * 0 0 GATGCATATCCTGCAAAGCACCAAGGATGGAAATTTGCGCTAAATAAGCC @;@A?>A;?@A>@@<=9A>??=<;A@9>A?=:;?=>;?<<?;<962&6): -853_392_1916 77 * 0 0 * * 0 0 GCGCCGGGGTACAGTGCAAGCGCGAACGAGACGAATTTGGGGAGGGCACT :<=<<<>>;>9<28A;<:*;:=95889<.:8;>34;6)%+6;05&::1+1 -853_393_183 137 chrM 660 37 49M = 660 0 CCCACCATCCCTTGCTAATTCAGCCTATATACCGCCATCTTCAGCAAAC ]ZZ]\[]]]]]]]YZ][[[]]Y]]]]]]]]][]XV]]SGT\ULSXY]Z[ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_393_183 69 chrM 660 0 * = 660 0 TCAGGATGGCCGTAATAATGGTGGCGTACACGCGCAAATTCCTTATGCGG =>;<<=*;4-;+9':>$427:&972<)71=;*793<1<1:;:7/9=)7/; -853_397_1746 181 chrM 9541 0 * = 9541 0 GTCGTATTCCTTCCTTGCAGATATGTCATACATCCCTGCAATCAGACGAG ,5,+2.4.7/><1:777)5;78/97?:0<582/9<880;8;98;:7987? -853_397_1746 89 chrM 9541 25 49M = 9541 0 CGCTACTCGTACTCATCGCATTCTGATTACCACAACTAAACATCTATGC DF8=*%8:ORJJNQOMD>LLOWUYMGGIQFNYV]SKPU]]VJGMFFVPJ XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:26C22 -853_398_593 141 * 0 0 * * 0 0 GACCCGTGGGCTCCACTGGTCAACGCCGTCCTATATGGCGGACTAGTCCT (,1&31,+//,&1?0,)(>91),,7(/0(1(3=/1>/)&83:5336:3-3 -853_398_593 77 * 0 0 * * 0 0 AATTTAACGTATGCGGTTTTCTCTTCTCAATCCTCACACCGGTAAGAACA (=714-?,:<,91)717878<7/9396=51,<<=,)/;8=5,:/8;7813 -853_423_1430 133 chrM 8093 0 * = 8093 0 CGGAGAACCCACCCGAGAGACATAGGGGCGAGATTCACCTGCTTTTTAGG >>5:<8<A<=:<=@<=5?:/=:8;7:=9<<87:<897:7891.=%;8/7; -853_423_1430 73 chrM 8093 37 49M = 8093 0 CTCAATCCAACAATGGCTAGTCCAACTTACATCAAAACAAATAATAGCT W]]]]]]]]]]]]]]]]]][\]]]]]]]]\Z]]]YW]]TKTO>=D?KXK XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:6T42 -853_424_115 141 * 0 0 * * 0 0 TGTTGACTAGCCGCAAGCTCCCTGGACAGAGGCAGTCTAAGCGGTCCGTT ;<<8<<>=9<=?:8:?:?8:A>;3;<=<8;<9?69>99;:;;77;:9/,; -853_424_115 77 * 0 0 * * 0 0 CCCGATACAGACCATGCGAATCGAGACGGGCTGTCTCCAGTCCAACCCGG 6>8:8<;>7?;;<,7>>;;8:<=16;:789549$%&6)'040$('%0''2 -853_439_1980 141 * 0 0 * * 0 0 TGGAGCGATTTAGACCGTATTTTAGTCTCCGCCGATAATAAGAGCAATCT 952;8:98452>4=9;:0=3)6/76-666=777+<4::&86.;'7;:+5' -853_439_1980 77 * 0 0 * * 0 0 CAATCAGTTTATGCAAGCTAAATCCCCGAGACTGAGAACGAAACTCTCGG ,<='0/71(/:.;2<<9:5>7?2<8<=9987;51?*=>:(7;<,()&:6/ -853_440_379 117 chrM 8797 0 * = 8797 0 TCCGTCGCGTCTCACGCCTCAGGAGCACTTTGGGACGCCGCTATTTGTGT 6<=8:7:366/<70;+5:9;7:;:<:899=89<8;:79><3:<8:5<8=9 -853_440_379 153 chrM 8797 37 49M = 8797 0 CCTTACCATATATCAATGATGGCGAGACATCATCCGAGAAAGCACATTC OOR\KGMS]SU]]ZY]YOQJQ]]\]]]]]]]]]\]]]]]]]]]]W[][X XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:21A27 -853_443_1353 141 * 0 0 * * 0 0 GACGGAGGAGGGTAGTGCGGGGGGCGGGCGTGGGGCTTGAGAACGGCTCA 95:19@9979:<4,82>02:3;5.46:65:5<95<7:;7;:>9*;:<:82 -853_443_1353 77 * 0 0 * * 0 0 AGCCGAAACGATTGTCGTGTAAAGGCGTCCGCCGGGTCAGATCGAAACCG 921/5>7972<889;:;9:3?>5;/95<509=7.878/4/;:.28;9/3( -853_443_704 181 chrM 8985 0 * = 8985 0 TGTTCCTGTAGTATATCACTTTTTTGCCCAGGACGGTGAGACACATGAAG 7:/><:;,?:::>;>=;:>>><9@>;>8A;=?@A@=?=?<=>AA>>AA<@ -853_443_704 89 chrM 8985 37 49M = 8985 0 GCTGCTGACCACCCACAGGTATCCACCCCTTAAACCCCCTAGAAGTCCC K[ZHA@@A!.]]\]][]]]]]]]]]]XW]]]YT\]]ZX]]]]]]]]XY] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 -853_458_262 141 * 0 0 * * 0 0 AAGTCATCTTTCCGGGGAACCCCCCGGACCTTCCTTCTCCCAACCAAAAA >>;>=;<4><=>5;=;>2=>:>1;<><'::8>(=:?5%<=9;29<<=-0< -853_458_262 77 * 0 0 * * 0 0 TTACCTGCCTCTCCCTCGCCACTTGGATCGCCGGCTGACTCTACATTACA <;:=7:;;<8<=8;=<</<9?<9::<<:;9;;84:91#2&%,-($&&%*% -853_458_615 137 chrM 5320 37 49M = 5320 0 TCTTTAGATTTACAGTCTAATGCTTACTCAGCCATCTTACCTATGTTCA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\\]]Z]]]YY]]Y][V XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_458_615 69 chrM 5320 0 * = 5320 0 TTGCTGTTACTGAAGTCATACCCTAAAGCTTAGTATGCGCGTGTGTCAAG 97899::;:<<:;;;<::9;;77:;;/8:=<6;86;34;;8695;:+5:< -853_47_795 133 chrM 649 0 * = 649 0 CGGAAGGAGCGAATACTGAACCAACACAGGTTAACTAGGAAGAAAGTGGA >?@;;?>=A@A9:>;:>=<;=>::88<;=8=<:95>08=5.(364,)1,) -853_47_795 73 chrM 649 25 49M = 649 0 CCCCGATAAACCCCACCATCCCTTGCTAATTCAGCCTATATACCGCCAT ]]\]]]]]X]]YY]]KL]]]NO][X07]]VIRZ]Z"0]]]]RKR]KF\V XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 -853_47_831 141 * 0 0 * * 0 0 TAAAATCTCGGATGGTTGCCTTGAACAAAAAGACAGCCCCGTCAAGGGAA 5A,&5,))%(()&,13(.9<2++8,>99*(%184,=/&5+)6/)0.&)64 -853_47_831 77 * 0 0 * * 0 0 TGGATACACGTAACAGAGGACCGGGCAGACTACTCGGGGGCCGTCGGTGG .)/'0(,&#*#'#)#(#(#*(#'%%1.3#$-2%$&/#$(#'%'%(##%+, -853_489_1193 117 chrM 5045 0 * = 5045 0 CCGGGTATAATCCATAATGGCGTTTTCCACTCTGCAAATACAGTAAACAG 85@06;<>)=55>29<;?)=>:<:===>5=>=>,><=?2=?<>>>=>=<= -853_489_1193 153 chrM 5045 25 49M = 5045 0 GCATACTAAGGACTGCAAGACTCTATCTCACATCAATTGAACGCAAATC RMO]UZ]]]]]\\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:16G32 -853_489_665 141 * 0 0 * * 0 0 ACGAGGAGATTAAAAAAAATGGGGTTAGATTAGATAAGATGAGAGGAGAG =>?><@=A<@@<?>>=:=:=;24&&)00+&$(4:%%'(4-#+16#-'1.$ -853_489_665 77 * 0 0 * * 0 0 GAAGAACGAGGTTTAAGATAGCGAAACCGCGACACGGACGGTAGAGTGGC ?::=-->4%&22=8)3<1;7$//6#)=(:%%<2(*,4,;7'92832:$9) -853_557_1176 117 chrM 12324 0 * = 12324 0 GTGGACGGTGACGGTAACCCCCAGCCTTCCCAGGAAGCATATAGTGGGGG ;,<<=95:3==7<9@?9;9><<?:=A5@>=?6;<@=8><>:9:>79>@;> -853_557_1176 153 chrM 12324 37 49M = 12324 0 GCTTCATCATAGCCATAGCCTGATTCCTATTCAACACCAACACATGAGA []]]]]]]]]]]][[]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:10G38 -853_557_600 141 * 0 0 * * 0 0 ACACGCCGCAAGTCACAACGAGAAGGCTAGGGACAAAAGACGGAGCAAAG 7-0'%()1&'&/65'1'/+,.*&&*17165:+0#-+'.&+''$-,$-&'# -853_557_600 77 * 0 0 * * 0 0 TTGCCCCAAGATCGATCTTGTCCCGAAAACGTAAAGGGCCCGGTGCGAGA &+&))(51(,1&&:'7:&)=.8),/5034&.&31&0.&-/$3'&)&1&1, -853_558_1569 141 * 0 0 * * 0 0 TGGGGGGAATGCGTAAAGGAGGACCATGCCTCTGAGAAACACGCGCGAGA &&(?(?(8><;;;;<=;<7<;;8<:9;<88=<:<=::?8,6658/:,181 -853_558_1569 77 * 0 0 * * 0 0 GCTACACACCCCCGAGCGGCCGGTGTAGTCGACGTGCGGAACGGTCGTAA (?16:=57:=779:995@=9?<?:>3<??=?339@?@;<@3?:8>><53? -853_558_962 181 chrM 2448 0 * = 2448 0 CTCCCCCCTCGGGGCCCTAACCTGCCGACCTCGCCCTATCGTTTACTCCT .)(0908:,&#6986$979'%<6.*772<<;>@=?=>;<>?=>>>==>?> -853_558_962 89 chrM 2448 37 49M = 2448 0 ATGTTGGATCAAGACATCCTAATGGTGCAACCGCTATTAAGGGTTCGTT \UV]]]]TS]]]XZ]]XFN]]]\]]]]]]]]]]]]]]\]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_563_1263 133 chrM 8090 0 * = 8090 0 CTCGTACTGCGTAATATACAACCCCACGTCCGTTTGGCTTAACAGGAGCT @A>=?A@><?=A<==@A==?>>=;==>:1<<:?=<=<;=:?=<&:3<3): -853_563_1263 73 chrM 8090 37 49M = 8090 0 AATCTCAATCCAACAATGGCTAGTCCAACTTACATCAAAACAAATAATA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\X\][VYZSFM\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:9T39 -853_563_1776 141 * 0 0 * * 0 0 GGTCCTGCGGGCGGTTCCCAATTTCATCTGCCCGAACATAATAGGTAACC @=?=A>A@A>A?>@>>A@>A>?>1@>>>5@?@@8>?@&8><>97(:9:5) -853_563_1776 77 * 0 0 * * 0 0 ACCTTGGACCCCTCCGGCAGCATCGGACAAGACCGCTGGGTGGTCTAGGG =A><?@A:AAA@<>AA9@==?96AA=69;<>8A3>;86&?:;6&<>7??< -853_56_1228 181 chrM 8643 0 * = 8643 0 CCCTGCGCCGAGCCGTCCCCCCCCCGACTGAACTCAGCAGATACTCGCAG (-5&(2)5(/&-:%&4&9%&-.1266:=:?<<?>>;??<:==<:?=?>;@ -853_56_1228 89 chrM 8643 37 49M = 8643 0 TAATGACCCACCAAACCCACGCCTACCACATAGTAAACCCCAGCCCATG Y[]MKVY]]]]QT]]]YY]]]]Y]PN]]]]X]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:22T26 -853_56_1324 141 * 0 0 * * 0 0 ACCATGTATGGAAAAAAAGAGTAGAGGAGGGAAACAATGAAAAACGGACC /6+58//.61366638/)&988).5::15578427=88&0:>;59:(6;< -853_56_1324 77 * 0 0 * * 0 0 GGGCTTTAACGCGTCGGCACGAGGTAAGTGGAGTGGCGATGGCACGATTC 5,(,)5+)57+94*,*3-#*4,2&2$2'(,2)-)22/)$23/1*)24'%$ -853_584_1986 141 * 0 0 * * 0 0 ATGCCACCGCCTTACTATCTTTTTTGCTGACATCACGCCGTCTCTTGGTG ,#$)*)(($3,))$&#,(&#*))&$##&#(%+&'+$,,$2$&(#&#+,#$ -853_584_1986 77 * 0 0 * * 0 0 ATAGCTTAACCGAATGCTTTAATAAATTTGCTGTTCTGAGGGCGTTACAC ,:)155*-9#7,;,)'232.:1(4,7#$3#97$%$,''+$,2(##,#%#( -853_585_1153 141 * 0 0 * * 0 0 AAGACCAACGTAAATTATCCATTCGTACGATGCCCTGGGCATTGCATTCC <>689<?9>59781>9956245:44?6,16=466;77615206+=12$#, -853_585_1153 77 * 0 0 * * 0 0 GCTCACGCCAGTACCCCAAAGGTCAAGCCTTTCAGATTCCGGCCTGGTTC 87?><89<==9>868=95:49<>7;:96<,:=;-1::::64;58/9;;)1 -853_585_542 129 chrM 580 37 49M = 1916 1336 AGCCTAAAACTCAAAGGACTTGGCGGTGCTTTACATCCCTCTAGAGGAG #(]]]]]]]]]]]]]]]]]]]]]]]]Y]]]]]]]]]]VV]]]Z]]YR\] XT:A:U CM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 -853_585_542 65 chrM 1916 37 49M = 580 -1336 AAAAGGAACTCGGCAAACACAAACCCCGCCTGTTTACCAAAAACATCAC ]]]]][]]][]]]]]]]]]]]]]]]]]YS[]]]\]]\MS]]]\TW\YTO XT:A:U CM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_611_1451 137 chrM 593 25 49M = 593 0 AAGGACTTGGCGGTGCTTTACATCCCTCTAGAGGAGCCTGTTCCGTAAT !S]]][TGDQ]WKRZWVRPLPYX[ZWTENZWXEFUX]PFRY[UUVS\QD XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:44A4 -853_611_1451 69 chrM 593 0 * = 593 0 TAATAGCAGCATTCAACTTTCCTGACCTTTACTACTACCGAACCTATGGG 28#'%)5/,)46%-#28,4,/;00,'6,/'-;4%(#9,###:++'.9*## -853_611_981 141 * 0 0 * * 0 0 GCACGGCAAGCGGTACGGGATACGTGAGGCGCGGTAAGCAAACCCGATCC ;=9===@::A><;<6><=;:@8;;==8<?:<<==<<3=<&>55=9;38=; -853_611_981 77 * 0 0 * * 0 0 GACCTGAGCAGCAGTCGCCTGGAGCAAGCCGGCCGATATAAATCGATGCT 85275/655287&4<7<5889<176837797:835.6&44427/'48$71 -853_626_1431 141 * 0 0 * * 0 0 ATGTAGGTCCCTGACGGCCCCACGGAGGAACCTTAGCTAGGCCAACAGAA >5<:5897:<;4==:;7>;9;<979>89?<7;;:<9:6<49;8644.1+$ -853_626_1431 77 * 0 0 * * 0 0 TGGGTCAATGCCCTATATGACATTAGGTTCGCGGTCGGTAACGAACAGCA 11-/8<:967:;959<<:5:<21781187057585;;*6-5$%8,2&%9$ -853_626_841 181 chrM 10675 0 * = 10675 0 CCCACCCGCCGTTCTAGGACGGCCACATTTTTATTAAGTCAGCCGGGATC ,)4,(85:>=?6@6>=7<=<>;>=<;?=A=<>>AA>@>A<>@?@A@?@AA -853_626_841 89 chrM 10675 25 49M = 10675 0 CCTCCCACTCTTAGTCGCACTAATCTCTATCCAAAACCTAACAGGCTCA R]]]XZ]]]]RLZ]]]]]]]\T]]]]]]]][]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:15T33 -853_628_1041 141 * 0 0 * * 0 0 CTATCGCTGATTTCACAGGAATCGGTCTTATAAGTTTGACCCCTTTTTTT <9)9<7839<:>/<<;>3'A9<36=<9$#9<8((<=8'&;97'7>;#2(8 -853_628_1041 77 * 0 0 * * 0 0 TGAGCAAGACCCGTAATCTACAACGACCAGCGGTTATGACAATGTATAGC 978:5,7295,/889'529//,,:55227($128:'9*83,4&29&,%57 -853_628_1976 117 chrM 620 0 * = 620 0 CGGACCCAGCAGTGTGAATCTGGGTAATCGCGCTGAGTGACAGCTCGGAA -&-,&&$9/84359:0;=1<7:::8?>.<9<:<:8A869=?=<;9=:<@< -853_628_1976 153 chrM 620 37 49M = 620 0 CTAGAGGAGCCTGTTCCGTAATCGATAAACCCCGATAAACCCCACCATC ON]][RQ]][W\]]]RR]]]YZ]\\]Z]]]]Z]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:17A31 -853_630_1363 137 chrM 2399 37 49M = 2399 0 CGCAATCCTATTCCAGAGTCCATATCGACAATTAGGGTTTACGACCTCG ]]]]]]]]]]]]]]]]]]]]]]]]]\]]]*,[]]IEZ]]]V[]]/1\SH XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 -853_630_1363 69 chrM 2399 0 * = 2399 0 ATAACAAAAGATTGAGGCCCATATTAGGTATTACCGCAAAAGGTGAGACG A@A=AAAA>A?@><?>@AAA8=:A@:?>A89:@>?=<?=@8A;;=59@8A -853_630_585 141 * 0 0 * * 0 0 GGCTGGACTATGCCGATGCGCGGGCACGGAGGGATCCGGGACCGGGAGGA &#$%#)%&#%#$$&(.##$##)-$&%%##&&.#&#$&-$#&'+'#$,,$& -853_630_585 77 * 0 0 * * 0 0 TAGTGTCTTGGTTCGTGTAGAAGTGCCTGGCTTAGCTAAATCGAATTGCT 15/,/(/))=&,)>,):(>:<=/,)/3>:,,49/(6)/;/',.11.+9'4 -853_648_1618 141 * 0 0 * * 0 0 TTGATCCTATGCGGACGATTCCCGCGCTTCTGCAGTTGAGTTTTTTAAAA 1/(,/3<)+7%'/,%'&1)'09';/5.)%,)1&*111&+&5&0$4%$581 -853_648_1618 77 * 0 0 * * 0 0 GAAAAGGGGCAGAATTTCGAGGGGAGTTAGGGCACAATCCCGCTAGCAGC &?,//&6(=77)):,)7.)933<)4%=:-8,831885//@3@:154',&3 -853_649_292 117 chrM 1156 0 * = 1156 0 GGAATTCCTGGAGAGGGGGGTTGGGGGGTTGAGAAAAAGGGGGGTTGGGT ::4572;408<;82=:;?::5;9=:<::98=<57:<;;>?;;=>:;;>9: -853_649_292 153 chrM 1156 37 49M = 1156 0 CACTTAACTAAAACATTCACCAAACCATTAAAGTATAGGAGATAGAAAT VV]XR]\]]Z]]]]]]]]]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_669_1548 141 * 0 0 * * 0 0 TCGGGGACCGCCGCGCTCTGGCAGAGAGCTCCAGGGCGGGTGCCGGCAGG 8<977;>:=:;=:9><:9<;795<65>2>;;99=9/<4<8113/78,((& -853_669_1548 77 * 0 0 * * 0 0 TTAGCTAGACATTAAACCATCCCTCTCATCTCCGGTTAACCCCGCCAGTT =;=<<=<<;=61:977/7;:96::<8.7<8;39:;976;;63)9;1+2:1 -853_669_616 181 chrM 8554 0 * = 8554 0 GCCGAACATGCATGCAGGTGGTCAACTGTTCCTGTAGTATATCACTTTTG 3;>8==8=;>:A?:>A<@9>A=?=@<9<?>>A?@@>@@A>@<@>>=><AA -853_669_616 89 chrM 8554 37 49M = 8554 0 TTCTACTAACTATCCTCGAATTCGCAGTAGCCATAATCCAAGCCTACGT YKKZ][YXT[\]]XZZYSM]]TNZ]WUXZ]]Z[]]]\TY]]][Z]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:31T17 -853_678_1204 141 * 0 0 * * 0 0 CTTAAGAGAAAACCTGCTAGCAAACAAAAATAGGGGGGGAACAGAACGAG 737,88957/39486691$92<:77<:1060:9),4&/)),)(').4+,' -853_678_1204 77 * 0 0 * * 0 0 GCAACCCGTACAAGTACAAGTACAAGTACAAGAACAAGAACAAGTAAAAA )=1=89;35:6:=:6;9A<5361?>1/6/=<'/;,A=&,:&>=/(5&A7& -853_678_1908 137 chrM 14105 25 49M = 14105 0 ATGTCATCATTATTCCCACGTGGAATCTAACCACGACTAATGACATGAA ]]][]]URX]]]WV]]UO\]]]ZXTRYNQX]]WVPNTOVXWUSRDLWEN XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:37C11 -853_678_1908 69 chrM 14105 0 * = 14105 0 TAATAGGTCGATAACGTTAGAGACGTAAGAGGAAAGTAACTGCCGTCATG 8@?:57<:::?;=><=:<?:@=?>9=@=97?;>=7<7?:66<:;:9;=83 -853_718_1061 133 chrM 1329 0 * = 1329 0 TGTCGAATATGCATTAAATAAGACTTGGCCGACTTGAAAAGTGTTGGCTT >A><@?@>@=>>;=<>@===<?=;>@A<=9:>;>=6==8<89:5>8>>;< -853_718_1061 73 chrM 1329 25 49M = 1329 0 AGAGAACTTAAGCTAAGCACCCCGAAACCAGACGAGCTACCTACGAACA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]\Z]]]]]\V\]]X\ZUSU]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:43T5 -853_719_183 141 * 0 0 * * 0 0 TAGAGAGCACTCCAGGGGAAGGGCCCAGAATCAAATAACAACTAATAGAA 99387)&%.,./'%682&.53/$)*65-440/#%$1$##.&$##2#,%$, -853_719_183 77 * 0 0 * * 0 0 ATTTTAGTTTACCTTCTTGAGTTCTACCTTAAACTTTGACCTCCCACCCC )/31.$%5'/#)',4#)'+$&7%%,&)#&&#%($$$$$%###%$'.##)' -853_775_1932 133 chrM 5645 0 * = 5645 0 GTTTACGCGTCCCATTTAGCTTCGCCTATTTTCCCGTGGAGTGTCACCCA ((>3,,(/7&(A,3:5('4&<<?3;/,;8=()7@=:(3556(9:>/1317 -853_775_1932 73 chrM 5645 37 49M = 5645 0 CCCGAATAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTACT ]QHY]Z[TDO]]]][[]]]][]]]]]]]]]]]]]]]YY]\]]ZOKZUW] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 -853_776_924 141 * 0 0 * * 0 0 GTGGGGTTAAATAGTAGAAGCGCGGACAGGTCCACGTGGAGCGCGAAGAA 88;9855?888?<.;=:54875'67+1#9661#474.5374&#1:2*%88 -853_776_924 77 * 0 0 * * 0 0 GGATTGTTACGTGCGCCCTATACTGGAACTGACCAGTCATTGACTGGAGA -212<+87/3582?/4731,<2(A:956/<3148*:7/28069392;:7/ -853_7_132 141 * 0 0 * * 0 0 NNGNNNGCNGNGAANGCNTANCNCNNTANNANNNGCCGNGAGNGNANGGN !!&!!!5#!)!)&+!2&!',!&!'!!1)!!1!!!4()$!/&,!'!'!0$! -853_7_132 77 * 0 0 * * 0 0 NNGGNGATGNNTGNGNNGGGNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG !!$(!,#&#!!&#!#!!#($!%$!#!!#&%#$(!#!#!!!!)(*+!!!,2 -853_7_141 141 * 0 0 * * 0 0 NNGNNNCTNCNCCGNGGNAANANANNAGNNGNNNGGGGNGAANGNGNGGN !!,!!!),!5!3)+!//!),!3!9!!&/!!+!!!**#)!.)(!(!(!43! -853_7_141 77 * 0 0 * * 0 0 NNGGNGCCGNNCANGNNGGCNAGNCNNGGACCGNANGNNNNAGGGNNNGG !!54!9518!!1&!5!!/31!)0!6!!)533/:!5!6!!!!)/<:!!!,7 -853_7_146 141 * 0 0 * * 0 0 NNCNNNCGNGNGCGNGANCCNGNCNNCGNNGNNNCTCCNGGTNCNTNGCN !!1!!!33!4!#15!7(!51!1!3!!.5!!5!!!/)/,!&-/!,!.!4,! -853_7_146 77 * 0 0 * * 0 0 NNCGNCACCNNGCNGNNGCTNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG !!10!/240!!0)!2!!#&'!'5!(!!(.-*$3!*!4!!!!+#(.!!!.( -853_7_269 141 * 0 0 * * 0 0 NNCNNNGCNGNGCGNAGNACNGNCNNGCNNTNNNGGCANCCTNGNTNTGN !!3!!!/.!+!*4,!42!)8!2!3!!62!!0!!!84;)!)7.!5!/!&%! -853_7_269 77 * 0 0 * * 0 0 NNCGNGGGGNNGGNGNNGGGNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG !!%&!('#%!!#*!#!!/##!&)!$!!'$',%,!%!2!!!!3,,*!!!,2 -853_7_321 141 * 0 0 * * 0 0 NNCNNNACNGNGAGNCANCCNANGNNGGNNGNNNATTGNCCCNGNANGGN !!$!!!&'!.!*##!6$!#1!+!#!!.+!!)!!!36(#!*5'!#!4!+(! -853_7_321 77 * 0 0 * * 0 0 NNGANGTGGNNGCNTNNGGGNCGNCNNCGAACGNTNANNNNGAAANNNGG !!+$!+21(!!*-!.!!)#1!8/!9!!6,3+%6!'!,!!!!2&6,!!!&2 -853_7_386 141 * 0 0 * * 0 0 NNGNNNTCNGNGCCNCCNTCNGNANNTCNNANNNGATANTCGNCNANGGN !!;!!!86!=!;9=!%5!58!<!2!!62!!&!!!&3:&!//8!*!7!5*! -853_7_386 77 * 0 0 * * 0 0 NNCGNGTAGNNGANGNNGTCNCGNANNGAAGTGNTNGNNNNAAAGNNNGG !!31!:7-%!!:,!-!!21,!77!)!!227:9:!2!;!!!!)',%!!!86 -853_7_405 141 * 0 0 * * 0 0 NNGNNNAANANAAGNTCNGTNANGNNTGNNTNNNCATGNCGANGNCNGGN !!=!!!;:!>!<8=!9<!:<!=!>!!;8!!;!!!;//1!&(&!/!'!*-! -853_7_405 77 * 0 0 * * 0 0 NNGCNAGGCNNTCNGNNAAANGTNGNNAGAAGGNANGNNNNATCTNNNCG !!<8!8;==!!;>!:!!7:7!7;!8!!7:>48=!2!=!!!!536*!!!;: -853_7_411 141 * 0 0 * * 0 0 NNCNNNAANCNAAGNAGNCGNCNGNNGGNNGNNNCAGANTCGNGNANGCN !!$!!!-#!#!*#+!,&!2*!#!#!!%'!!)!!!'$)$!/-#!#!'!,+! -853_7_411 77 * 0 0 * * 0 0 NNCANGAAANNTTNGNNAGGNAGNANNGAAGGGNGNANNNNAAAANNNAA !!,/!13;,!!&,!+!!2/%!*1!$!!%*)+#,!,!&!!!!'-'&!!!++ -853_7_445 141 * 0 0 * * 0 0 NNGNNNTTNANGTTNATNTCNANCNNCTNNGNNNAAGANGGGNGNGNGGN !!&!!!0%!#!,&'!,'!$$!&!,!!&)!!'!!!..*&!#,7!1!.!10! -853_7_445 77 * 0 0 * * 0 0 NNTANTGCANNACNCNNCGANCCNTNNTACGGGNCNGNNNNTGGGNNNGG !!&'!*+'#!!'%!&!!,%#!)%!(!!'##$&'!#!$!!!!$$#,!!!#$ -853_7_469 141 * 0 0 * * 0 0 NNCNNNCANTNTCTNTTNTTNANTNNAGNNCNNNGTTTNGTANGNTNTGN !!#!!!%%!$!))+!$,!*%!.!(!!.#!!#!!!#&##!##&!#!#!##! -853_7_469 77 * 0 0 * * 0 0 NNGGNACAGNNGANTNNGAANGCNANNAAGGAGNGNGNNNNAGATNNNAG !!##!*($&!!##!#!!%))!#1!%!!(,##$.!#!(!!!!##'#!!!&$ -853_7_53 141 * 0 0 * * 0 0 NNCNNNCGNTNAGTNGGNGGNGNGNNGGNNGNNNGGGGNGGGNGNGNGGN !!0!!!10!)!)0)!,-!##!%!%!!##!!'!!!%+&)!%$/!)!$!/(! -853_7_53 77 * 0 0 * * 0 0 NNAGNCCGANNGGNGNNGTANGGNTNNATTGCGNCNCNNNNGGGCNNNCG !!14!3.15!!47!4!!8+1!$9!(!!,..1)&!3!(!!!!1/9&!!!,3 -853_7_78 141 * 0 0 * * 0 0 NNGNNNAGNGNGTGNGGNCCNGNGNNCGNNCNNNGGGGNGGGNGNTNGGN !!#!!!5,!$!5&+!#8!)#!5!%!!3%!!'!!!$$8+!&)%!)!(!*#! -853_7_78 77 * 0 0 * * 0 0 NNCTNGGGGNNGGNGNNGGGNGGNGNNGGGGCGNGNGNNNNGGGGNNNGG !!##!###$!!##!&!!#$&!$&!&!!%&)'#'!$!#!!!!&)*(!!!&* -853_7_88 141 * 0 0 * * 0 0 NNTNNNGGNGNATGNCTNGGNGNCNNGTNNANNNGCTANCTGNCNGNTAN !!1!!!42!5!,25!24!77!4!3!!81!!,!!!5147!)/6!,!,!1&! -853_7_88 77 * 0 0 * * 0 0 NNGTNGGGCNNCTNGNNATTNTANCNNACAGGANCNGNNNNGGGGNNNGG !!61!5551!!13!4!!.,)!/,!3!!.)/17+!&!5!!!!-'0.!!!,5 -853_815_1179 141 * 0 0 * * 0 0 GCGGACTAGAGACGTCAACTAGGAGTAGCCGAGTTCAAAAGGGCAAAGGA <'#37,/*;1;7,;45-738,(/3,+.%21:/&93('(+7#*(,8(*(&/ -853_815_1179 77 * 0 0 * * 0 0 ATTCAATGGACTAAATCCGGGACCGAGGCGCGTCTGGCAGTCGACAGCTA 67827:>5597:=:<6<,224348025,71:879724,2(7/29)92222 -853_816_193 137 chrM 2616 37 49M = 2616 0 AGAAGCGCCCTCAAACTAATAGATGACATAATCTAAATCTAACTAATTT ]]]]]\]]]]]]]]]]]]]]]\\\]]Y]]]]]VY][X]]Z[NL[WMQT[ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_816_193 69 chrM 2616 0 * = 2616 0 GTGGTCTGAGTCAACCTGTAGATGTTTCGTGCACGATAACCCAGGGATTC ><><<;<@;9;>;=::>:==8<::=8>7<<:</=<8=@<?878>?<6?<6 -853_827_2017 181 chrM 5150 0 * = 5150 0 ATTTCGAATCGCACGCGCACACAGTTCGAGGATCCTCTTAAACGTTAGCG ++6=<9;<8<7935;5480<::;<;::8;8;7994=<8?:=;8;>::8?< -853_827_2017 89 chrM 5150 37 49M = 5150 0 TTTTAGTTAACAGCTAAATACCCTAATCAACTGGCTTCAATCTACTTCT FCHRRSLJSMOW\\Y[]YZOIDI][\]]]]\Y[Z\]ZUUZ[Y\]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_828_1138 141 * 0 0 * * 0 0 GCACTATCGTGTGGCCCGATGTCCGGTCCTCCTCTCGGTTTTGGACCTGT &+&&)')$#,&,#&&')&%&'/&$$'#####&##%$$###&&##&$$### -853_828_1138 77 * 0 0 * * 0 0 TTAAAAGTCATGAGCGTACAACACGTGCCATCTGTCCTTAATACCTATCA &)&$&)&&&&)&&%&&&&)&'&&&%&%&&%%&#&&&&&&&&&&%$&&&#& -853_82_2023 181 chrM 1195 0 * = 1195 0 CTAGCTCTGTACGCGGCTTATGCGTCTCTTAGGCTCCCTAATTCTAATAC 75:5956654=71?9858;96;9>;;:?8:<=8=45762<?57<<>79;9 -853_82_2023 89 chrM 1195 37 49M = 1195 0 AGATAGAAATTTTAACTTGGCGCTATAGAGAAAGTACCGTAAGGGAACG XX]]VQXWSNT]]]WV]\Y]]]]]]]]]]]]W\]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_83_197 141 * 0 0 * * 0 0 CCGTCTCCCGCGCCGCAGAGACACTACTTCCTCGCCGCGGTGCGCCGGGC /9;58179583997;5591<26;797=55:995$)&$'#-$(&&'(*(%& -853_83_197 77 * 0 0 * * 0 0 GGCAGATGATATGGACTGAGTGGGGGGGGAGGGGGGGGGGGGGGGGGGGG 8;95;6:96698;6;89:3=%(-*$&(+$&#%.''+(.-%-/5.*.*4/5 -853_843_1357 133 chrM 13593 0 * = 13593 0 GTTTGCTAGAGTCGTATGTAGTCGTCGTTTCACGTGACCGGTCTACACCC >:AA8=?:??:?@>@?><>8<;<:>31=>:8(=8<74=,9;?5;724>48 -853_843_1357 73 chrM 13593 25 49M = 13593 0 TCCACGAGTAACCTCTAAAATTACCAAGACCCCAACAAGCAACGACCAA ]]]]]]]]]]]]]]]]]]]]]\]]]]]VU]]]XJQ]]\UYYXTOX]ZQN XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:45T3 -853_843_799 133 chrM 16042 0 * = 16042 0 CTACACCTGCGTATCGCCTCGAAAATGCTGTCACCTTAAGCACGTTTAGG @>>=A:AA=A9A>@4:=>:8:2?:@23;>;;9=1<=;=933'58>;9>:6 -853_843_799 73 chrM 16042 37 49M = 16042 0 GAAGCTGGACTTAAATTGAACGTTATTACTCCGCATCAGCAACCATAAG ]]]]]]]]]]]][\]]]VT]]]YZ]]]QR]]]]W]]]UV]]]OL]]TQT XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:27C21 -853_844_231 141 * 0 0 * * 0 0 GGGGGACAGGTGGAACTGGTAGACGGTACAAGGGAGAGCGCAGGGGATCA 4289*5)*(/(/+;=$/806&&*76&,.19&4754&2/9/92>3;)11:, -853_844_231 77 * 0 0 * * 0 0 TTAATTCTAGGTTTAAATGGAATTAAGATCCTGAGCCGGCCAAACCCGGG &&8151/>,/,/8,(?<=&('(?/;8&8))<?11=39%718,$,./9*89 -853_844_634 141 * 0 0 * * 0 0 TCGAAAGCTCAACATCATCCGGCAGGGCGTAAAACTGGTCGCCCATTGAA >A;887A=2@9>;.;<67,;?::2:<;9#?<97/7<944:;):&*>90,6 -853_844_634 77 * 0 0 * * 0 0 TCTATCCACCGAAGTCAGTGTCTGAAGTCTTAGACACGTTCGAAACCAAT 7#56860817:11777)66,9&>7%;188/87,9&5608#9.764682%0 -853_877_1974 141 * 0 0 * * 0 0 GCGTCCGCAAGGCGCGGAGCCTGAGAAAATTAGCCCGCGAGAATGACTAT 76187559,719324834789;;285501;<<65:<<:9;;99=<830+: -853_877_1974 77 * 0 0 * * 0 0 TTGCCGTGAGGCGATTGTACCAAGATAAAAACAAAATAACCTAAAAACAA *,*-4'#)74,',)(*##,#&#+#%##&#$'##%##)(#$%##$#(##'# -853_878_1093 137 chrM 2417 37 49M = 2417 0 TCCATATCGACAATTAGGGTTTACGACCTCGATGTTGGATCAAGACATC OZ]]]Z]]YWI8J]]TJX]]N;K]]RAN]N;3@XZH9=NYH>T]UE!/X XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_878_1093 69 chrM 2417 0 * = 2417 0 GGTTGGAGCGGGATAGCAAATGAGGATCCTGTCACAATCTCCCACTCCGA @@/&3,(,,5533/161?@57/1,3>3<<8>53)65=1)735,1A<;:8@ -853_887_1933 181 chrM 11695 0 * = 11695 0 GGCGCCAAGCCGTCCGACGACACTTGCGATGTGGGGACAGAGGGTGTGAA ))%,&))3#=4:=;<=:>8<:9=;?@<=<<>?A==;9<:><<<7@>>?4< -853_887_1933 89 chrM 11695 25 49M = 11695 0 CAAACACGGCTCTCTCAAACTTTTAAAGGATAGGAGCTATCCGTTGGTC W\]]UJN][WZ\]]]OR]]]]]]]]]]]]]W[]]]TQZ[]JCQV\]]Y] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:6T42 -853_888_1016 141 * 0 0 * * 0 0 TGAAGACCGGGGGTCCTATGATCAACCCAACCATGAATTGTCACAGACCG &.+/)(-#'('&5#405$2220&,/03$0+)9$(#)4%%&&-,#&#),'# -853_888_1016 77 * 0 0 * * 0 0 TACGGGGGAAGGGCATCCCGACGTTCAGGGCTCGGCACCACCCCAGAGGA &(,,//6)))'<&/9&')/,,)(,&,&&9&<)/'3,),/&&)7:)(/),/ -853_943_830 141 * 0 0 * * 0 0 AACCTACTATGCTCATGCTGGAGAAGAAAAACACCGGTGCCATCAAACCA (>,5+''#1):,#>#10#%2:%$3&(4#.#..#*39(#':6,$'%))##4 -853_943_830 77 * 0 0 * * 0 0 TATTTTTGGAGTACCCTCCTGTACCAATAAACGTGGCCCCGCCGGGTGCA 61)5/6,34'20)%@#)#<%#$<)6+33&6&')4&0'0*(#'215.$'9/ -853_944_156 117 chrM 2054 0 * = 2054 0 TTCGATCAGGGTACGACTGTGGAATTTTGAGTACTGCGTCTGGGACATTG :<3><=.:><?19>99.;>;67:>==<=A=?;::>=8<??>>>A<<==;; -853_944_156 153 chrM 2054 25 49M = 2054 0 TCACTTGTTCTCTAAATAGGGACTTGTATGAATGGCCACACGAGGGTTT PV]]\XV[]]]X[]]]]]]]]XW]]]]]]]]]]]]]]]]]]]]]\]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:10C38 -853_946_129 181 chrM 7799 0 * = 7799 0 ACGCCACGCAGCGTAACGGCAAGCGCGGGCTCAGCACGAGACCTTGCGCC '&($%,4().)8%.4::%$'492/(88.$0:<,&,=7/.,7,$',:;<:8 -853_946_129 89 chrM 7799 37 49M = 7799 0 GTGATATGCCACAGTTGGATACATCAACATGATTTATTAATATCGTCTC ORU\]]\\V[]]]]]SS]]]]]]]]]\]]]]]]]]]]]]]\Z]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_946_1345 141 * 0 0 * * 0 0 TGGACCCGAATCCAAGCAGCCTGCGAACAAGGTAGGCGCCTGGTTAGCCA ?A<:<<A:=<:@6<><@:=>1@=<==<4:>:=<:>985::685;:2689; -853_946_1345 77 * 0 0 * * 0 0 GCGCCCGCCGTCGGGCTGAAGAGGTCGGCCCCGACCGCCGTCACCACCAG 8386936:688649:8;80:8#,#/,#1#-3#,#)4)2#42)&&12'2%/ -853_967_1892 141 * 0 0 * * 0 0 TCGGGCAGATGGCGTCAATATCCTAATCCCGCGGAGCGGGCAGTACGGAT :>;<<<@==;<<<>;2-#8>87'9><*%=@271=A6//=;)7,;=1).:5 -853_967_1892 77 * 0 0 * * 0 0 TATAATAGGTAAGTTCTGCTCGGAACATATTTTACCCCATTCTGCCTACC 8;64;9:878<=<9;:8>5:;9<>:;>769&;1://6&8;):1890:471 -853_968_1657 117 chrM 1985 0 * = 1985 0 CATAACAACATTCGGTAAGGTTTGATTAAAGTCAGCTCGTTGTTGGAAAA &%%)&')##$*,#$#$(#####,&#*%&$+##36<6<<8;99<9<88::; -853_968_1657 153 chrM 1985 37 49M = 1985 0 GAGGCACTGCCTGCCCAGTGACATCTGTTTAAACGGCCGCGGTATCCTA \TZ]Z]ZTY[[[]]]]Z\]]]]]]]]]]ZY]]]\Z]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_968_485 141 * 0 0 * * 0 0 GAATGGAGGCGTGCATTTGAAAACGAGGCCAGGAAACTTCAGTACAGGAA =<:@<;:>@AA;>A9?8===<=>9<4;=7:2==9;94?@>.,;&;,=<&0 -853_968_485 77 * 0 0 * * 0 0 CCCGGTCGTCCGTTTGCGGTAAACGGCAACACAAAAACCCCAACCTTACC <=?;>==@<;>;<=><<?:<=?>=;?<>>=:><>=>7;>>7;8<::8:>< -853_968_835 117 chrM 7621 0 * = 7621 0 GTGTCCGCGCCGGAGCCGATTAAGGATATTTTCCCGTATCCATGACTTAT -986=;>48<==:<==<5<<9>::<=>>8<;>;?>><>=@:>:?<:<;A6 -853_968_835 153 chrM 7621 25 49M = 7621 0 TACTACGGCCAATGCTCAGAGATCTGCGGATCAAACCACAGCTTTATAC ZLCP"!ATX[NN]]]RR]]]Y[]]]\]]]]SS]]]YZ]Y]USVY]UU]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:8T40 -853_985_1608 141 * 0 0 * * 0 0 CCTCGAGTAAGGAAGAGAGAAGGGTACGATTATAATCCTCCCAAAACGAG @798;<9::<9;<:=?9>8;=9:97?68?=;1<:58:3/97%2)%-)#&# -853_985_1608 77 * 0 0 * * 0 0 TGTAAGCTATTGATTATACGCCCAGATGGACAATCGACAGGAAGGGAGGG <:99:7<::<:>,<<;=:<97?5/:/;:2::::58<921;>:::<=19=< -853_985_616 181 chrM 231 0 * = 231 0 GGTGGGTTGATATCGCGTCACTTAGGGTGGTAAGGTATGGTATCACAACA )$)($$#1&,&,#)#1&6=3;<=?;568=:;>@868@@@4>=@>>8A?@= -853_985_616 89 chrM 231 37 49M = 231 0 CCCCACGGGACACAGCAGTGATAAAAATTAAGCTATGAACGAAAGCTCG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:45T3 -853_991_1890 133 chrM 3733 0 * = 3733 0 AGGGGGGCAAGTTCAGGTTAATATATAAGTTTAGCCCAAAAATTACCTTC >,>)&,(->>.32(<@>1&=)/:/)>/&+((>,;)3;&1>=;,%63=7:9 -853_991_1890 73 chrM 3733 25 49M = 3733 0 ATGTCTGACAAAAGAGTTACTTTGATAGAGTAAAACATAGAGGCTCAAA ][]RO]]TDABJVW]UU]XURWUR]]]]]SO][IHW1(NUSD!!H\6$: XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 -853_992_1006 133 chrM 5367 0 * = 5367 0 CTGAATCAATGAGCCCACCACCACCCAAATGCTACCTACAGCAGACAGAG ###(#$#$0###1(###+,'##*##%#%##&##0####$&'#*%*'%#+# -853_992_1006 73 chrM 5367 37 49M = 5367 0 CATCAACCGCTGACTATTTTCAACTAACCACAAAGACATCGGCACTCTG ]]YT]]W\\U]YOT]]]]]]ZV][]]RT]][Z]][]][\ZUSYTRXQPY XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_992_1044 141 * 0 0 * * 0 0 ACAGAGGCCCACCTGCTCACTCGGACAGCCGCCCACGATGAGCACTGCTC :70.7143#46<257:>/,488938=96958:/75;29)715689/8(&+ -853_992_1044 77 * 0 0 * * 0 0 TGCGTCGTGCGCTACTCCGTATTCCCCGGTAGGGGAACCTCGTAGGACGG &/5-<)&(':4+<3838&&4&7'1-17&,/11044//$&,%8,%$4,-%# -853_993_143 141 * 0 0 * * 0 0 CGGGGCTCCAAGCTCCCCATCGAGAGACTGGGGTCCGTACACCAGACTCG ;759<65;<>97<::==@/8;6;6<:;85==1::;;:97<,9=937:79: -853_993_143 77 * 0 0 * * 0 0 CGGAACGAGGGAGTATAAGCATAGTCCCGCATCAATAGACCTATGGATTT <788::9:8:77>3,6;<768:?:39<=:611>9751:;8:55895(>;3 -853_996_1656 113 chrM 16037 25 49M = 1018 -15019 AAATTGAAGCTGGACTTAAATTGAACGTTATTACTCCGCATCAGCAACC YVP/1W[[\]YY\]\\]]]]ZT[]][[]]]]\]]]\Y[[ZWY\Y\]]]] XT:A:U CM:i:1 SM:i:25 AM:i:25 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:32C16 -853_996_1656 177 chrM 1018 37 49M = 16037 15019 AGTATACCGGAAGGTGTACTTGGATAACCAAAGTGTAGCTTAAACAAAG ]]]\]\]UQ]]][]]][]]]]]XW]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:25 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_996_488 141 * 0 0 * * 0 0 GCGTACCTGAACTTGGCCATTAAGAGCAGAGCCACCAGTGTCGCGGGGGC &-'*/*/8)$2(,.22&10&,))0/+,$38'(531,)2)'((%'6'(-1. -853_996_488 77 * 0 0 * * 0 0 TGCCCCGTCCACAAAACTCTAGACACACGCCGACCTTGGCAAAAGAAGAA .&'6,#*<(%'8('(,8.4'.1*9)81-0(*0$&2+-)5,0/,1*21#%* -853_997_740 141 * 0 0 * * 0 0 GTTATCGGGGGTTTTCGCAACATAGCTTTGGTAAGCATTTCTGCACCCCT (=('(,(,+<=3?<;::97<;::9<;8:4;<;9::=38:;?=;1<99087 -853_997_740 77 * 0 0 * * 0 0 GGGGGGAGATCGGTCGTCCTCGCGATTCGACGTAGGGAAGGAAACCGAAC 9&5;'.1')&(4&2&(,'))=&,,-.&+,&)(.,7/2)(4/-'95,4,<3 -@PG ID:bwa PN:bwa VN:0.5.9-r16 -@SQ SN:chrM LN:16660 Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. 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commit/galaxy-central: dannon: Fix chunk-serving logic for tabular files.
by Bitbucket 17 Aug '12

17 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/3840c86e34b7/ changeset: 3840c86e34b7 user: dannon date: 2012-08-17 19:55:37 summary: Fix chunk-serving logic for tabular files. affected #: 1 file diff -r 9e9e104ad5c93a2268bb00cfae09b57a31ece13c -r 3840c86e34b77bbd0d7c2da0c4ff3e5004dc0fe4 lib/galaxy/datatypes/tabular.py --- a/lib/galaxy/datatypes/tabular.py +++ b/lib/galaxy/datatypes/tabular.py @@ -264,10 +264,10 @@ def display_data(self, trans, dataset, preview=False, filename=None, to_ext=None, chunk=None): #TODO Prevent failure when displaying extremely long > 50kb lines. + if chunk: + return self.get_chunk(trans, dataset, chunk) if to_ext or not preview: return self._serve_raw(trans, dataset, to_ext) - if chunk: - return self.get_chunk(trans, dataset, chunk) else: column_names = 'null' if dataset.metadata.column_names: @@ -644,4 +644,5 @@ """ file_ext='fli' MetadataElement( name="columns", default=2, desc="Number of columns", readonly=True, visible=False ) - MetadataElement( name="column_types", default=['str', 'str'], param=metadata.ColumnTypesParameter, desc="Column types", readonly=True, visible=False, no_value=[] ) \ No newline at end of file + MetadataElement( name="column_types", default=['str', 'str'], param=metadata.ColumnTypesParameter, desc="Column types", readonly=True, visible=False, no_value=[] ) + Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: jgoecks: Add feature/attribute name indexing framework to converters. Provide full text indexing for GFF attributes.
by Bitbucket 16 Aug '12

16 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/9e9e104ad5c9/ changeset: 9e9e104ad5c9 user: jgoecks date: 2012-08-16 22:32:00 summary: Add feature/attribute name indexing framework to converters. Provide full text indexing for GFF attributes. affected #: 7 files diff -r 0bfd0f25956e3be0f04f68c9e05c1d07f2948f98 -r 9e9e104ad5c93a2268bb00cfae09b57a31ece13c datatypes_conf.xml.sample --- a/datatypes_conf.xml.sample +++ b/datatypes_conf.xml.sample @@ -4,6 +4,7 @@ <datatype extension="ab1" type="galaxy.datatypes.binary:Ab1" mimetype="application/octet-stream" display_in_upload="true"/><datatype extension="afg" type="galaxy.datatypes.assembly:Amos" display_in_upload="false"/><datatype extension="axt" type="galaxy.datatypes.sequence:Axt" display_in_upload="true"/> + <datatype extension="fli" type="galaxy.datatypes.tabular:FeatureLocationIndex" display_in_upload="false"/><datatype extension="bam" type="galaxy.datatypes.binary:Bam" mimetype="application/octet-stream" display_in_upload="true"><converter file="bam_to_bai.xml" target_datatype="bai"/><converter file="bam_to_summary_tree_converter.xml" target_datatype="summary_tree" depends_on="bai"/> @@ -79,6 +80,7 @@ <converter file="gff_to_bed_converter.xml" target_datatype="bed"/><converter file="gff_to_interval_index_converter.xml" target_datatype="interval_index"/><converter file="gff_to_summary_tree_converter.xml" target_datatype="summary_tree"/> + <converter file="gff_to_fli_converter.xml" target_datatype="fli"/><display file="ensembl/ensembl_gff.xml" inherit="True"/></datatype> diff -r 0bfd0f25956e3be0f04f68c9e05c1d07f2948f98 -r 9e9e104ad5c93a2268bb00cfae09b57a31ece13c lib/galaxy/datatypes/converters/gff_to_fli.py --- /dev/null +++ b/lib/galaxy/datatypes/converters/gff_to_fli.py @@ -0,0 +1,53 @@ +''' +Creates a feature location index for a given GFF file. +''' + +import sys +from galaxy import eggs +from galaxy.datatypes.util.gff_util import read_unordered_gtf, convert_gff_coords_to_bed + +# Process arguments. +in_fname = sys.argv[1] +out_fname = sys.argv[2] + +# Create dict of name-location pairings. +name_loc_dict = {} +for feature in read_unordered_gtf( open( in_fname, 'r' ) ): + for name in feature.attributes: + val = feature.attributes[ name ] + try: + float( val ) + continue + except: + convert_gff_coords_to_bed( feature ) + # Value is not a number, so it can be indexed. + if val not in name_loc_dict: + # Value is not in dictionary. + name_loc_dict[ val ] = { + 'contig': feature.chrom, + 'start': feature.start, + 'end': feature.end + } + else: + # Value already in dictionary, so update dictionary. + loc = name_loc_dict[ val ] + if feature.start < loc[ 'start' ]: + loc[ 'start' ] = feature.start + if feature.end > loc[ 'end' ]: + loc[ 'end' ] = feature.end + +# Print name, loc in sorted order. +out = open( out_fname, 'w' ) +max_len = 0 +entries = [] +for name in sorted( name_loc_dict.iterkeys() ): + loc = name_loc_dict[ name ] + entry = '%s\t%s' % ( name, '%s:%i-%i' % ( loc[ 'contig' ], loc[ 'start' ], loc[ 'end' ] ) ) + if len( entry ) > max_len: + max_len = len( entry ) + entries.append( entry ) + +out.write( str( max_len + 1 ).ljust( max_len ) + '\n' ) +for entry in entries: + out.write( entry.ljust( max_len ) + '\n' ) +out.close() \ No newline at end of file diff -r 0bfd0f25956e3be0f04f68c9e05c1d07f2948f98 -r 9e9e104ad5c93a2268bb00cfae09b57a31ece13c lib/galaxy/datatypes/converters/gff_to_fli_converter.xml --- /dev/null +++ b/lib/galaxy/datatypes/converters/gff_to_fli_converter.xml @@ -0,0 +1,13 @@ +<tool id="CONVERTER_gff_to_fli_0" name="Convert GFF to Feature Location Index"> +  +  + <command interpreter="python">gff_to_fli.py $input1 $output1</command> + <inputs> + <param format="gff" name="input1" type="data" label="Choose GFF file"/> + </inputs> + <outputs> + <data format="fli" name="output1"/> + </outputs> + <help> + </help> +</tool> diff -r 0bfd0f25956e3be0f04f68c9e05c1d07f2948f98 -r 9e9e104ad5c93a2268bb00cfae09b57a31ece13c lib/galaxy/datatypes/tabular.py --- a/lib/galaxy/datatypes/tabular.py +++ b/lib/galaxy/datatypes/tabular.py @@ -638,3 +638,10 @@ dataset.metadata.reads = reads.keys() +class FeatureLocationIndex( Tabular ): + """ + An index that stores feature locations in tabular format. + """ + file_ext='fli' + MetadataElement( name="columns", default=2, desc="Number of columns", readonly=True, visible=False ) + MetadataElement( name="column_types", default=['str', 'str'], param=metadata.ColumnTypesParameter, desc="Column types", readonly=True, visible=False, no_value=[] ) \ No newline at end of file diff -r 0bfd0f25956e3be0f04f68c9e05c1d07f2948f98 -r 9e9e104ad5c93a2268bb00cfae09b57a31ece13c lib/galaxy/visualization/tracks/data_providers.py --- a/lib/galaxy/visualization/tracks/data_providers.py +++ b/lib/galaxy/visualization/tracks/data_providers.py @@ -2,7 +2,7 @@ Data providers for tracks visualizations. """ -import sys +import os, sys from math import ceil, log import pkg_resources pkg_resources.require( "bx-python" ) @@ -59,6 +59,51 @@ def _chrom_naming_matches( chrom1, chrom2 ): return ( chrom1.startswith( 'chr' ) and chrom2.startswith( 'chr' ) ) or ( not chrom1.startswith( 'chr' ) and not chrom2.startswith( 'chr' ) ) + +class FeatureLocationIndexDataProvider( object ): + ''' + + ''' + + def __init__( self, converted_dataset ): + self.converted_dataset = converted_dataset + + def get_data( self, query ): + # Init. + textloc_file = open( self.converted_dataset.file_name, 'r' ) + line_len = int( textloc_file.readline() ) + file_len = os.path.getsize( self.converted_dataset.file_name ) + + # Find query in file using binary search. + low = 0 + high = file_len / line_len + while low < high: + mid = ( low + high ) // 2 + position = mid * line_len + textloc_file.seek( position ) + + # Compare line with query and update low, high. + line = textloc_file.readline() + print '--', mid, line + if line < query: + low = mid + 1 + else: + high = mid + + position = low * line_len + + # At right point in file, generate hits. + result = [ ] + while True: + line = textloc_file.readline() + if not line.startswith( query ): + break + if line[ -1: ] == '\n': + line = line[ :-1 ] + result.append( line.split() ) + + textloc_file.close() + return result class TracksDataProvider( object ): """ Base class for tracks data providers. """ diff -r 0bfd0f25956e3be0f04f68c9e05c1d07f2948f98 -r 9e9e104ad5c93a2268bb00cfae09b57a31ece13c lib/galaxy/web/controllers/tracks.py --- a/lib/galaxy/web/controllers/tracks.py +++ b/lib/galaxy/web/controllers/tracks.py @@ -345,6 +345,20 @@ # Have data if we get here return { "status": messages.DATA, "valid_chroms": valid_chroms } + + @web.json + def feature_loc( self, trans, hda_ldda, dataset_id, query ): + """ + Returns features, locations in dataset that match query. Format is a + list of features; each feature is a list itself: [name, location] + """ + dataset = self.get_hda_or_ldda( trans, hda_ldda, dataset_id ) + converted_dataset = dataset.get_converted_dataset( trans, "fli" ) + data_provider = FeatureLocationIndexDataProvider( converted_dataset=converted_dataset ) + if data_provider: + return data_provider.get_data( query ) + else: + return 'None' @web.json def data( self, trans, hda_ldda, dataset_id, chrom, low, high, start_val=0, max_vals=None, **kwargs ): diff -r 0bfd0f25956e3be0f04f68c9e05c1d07f2948f98 -r 9e9e104ad5c93a2268bb00cfae09b57a31ece13c tools/filters/gff/sort_gtf.py --- a/tools/filters/gff/sort_gtf.py +++ b/tools/filters/gff/sort_gtf.py @@ -24,5 +24,6 @@ # Print feature. for interval in feature.intervals: out.write( "\t".join(interval.fields) ) +out.close() # TODO: print status information: how many lines processed and features found. \ No newline at end of file Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. 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commit/galaxy-central: inithello: Improved error handling for failed indexing jobs.
by Bitbucket 16 Aug '12

16 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/0bfd0f25956e/ changeset: 0bfd0f25956e user: inithello date: 2012-08-16 21:43:02 summary: Improved error handling for failed indexing jobs. affected #: 2 files diff -r 35d80be976914c49759e17068a2ba65b752eb3b1 -r 0bfd0f25956e3be0f04f68c9e05c1d07f2948f98 lib/galaxy/tools/genome_index/__init__.py --- a/lib/galaxy/tools/genome_index/__init__.py +++ b/lib/galaxy/tools/genome_index/__init__.py @@ -18,13 +18,16 @@ <tool id="__GENOME_INDEX__" name="Index Genome" version="0.1" tool_type="genome_index"><type class="GenomeIndexTool" module="galaxy.tools"/><action module="galaxy.tools.actions.index_genome" class="GenomeIndexToolAction"/> - <command>$__GENOME_INDEX_COMMAND__ $output_file $output_file.files_path $__app__.config.rsync_url "$__app__.config.tool_data_path"</command> + <command>$__GENOME_INDEX_COMMAND__ $output_file $output_file.files_path "$__app__.config.rsync_url" "$__app__.config.tool_data_path"</command><inputs><param name="__GENOME_INDEX_COMMAND__" type="hidden"/></inputs><outputs><data format="txt" name="output_file"/></outputs> + <stdio> + <exit_code range="1:" err_level="fatal" /> + </stdio></tool> """ @@ -64,6 +67,18 @@ if gitd: + fp = open( gitd.dataset.get_file_name(), 'r' ) + deferred = sa_session.query( model.DeferredJob ).filter_by( id=gitd.deferred_job_id ).first() + try: + logloc = json.load( fp ) + except ValueError: + deferred.state = app.model.DeferredJob.states.ERROR + sa_session.add( deferred ) + sa_session.flush() + log.debug( 'Indexing job failed, setting deferred job state to error.' ) + return False + finally: + fp.close() destination = None tdtman = ToolDataTableManager( app.config.tool_data_path ) xmltree = tdtman.load_from_config_file( app.config.tool_data_table_config_path, app.config.tool_data_path ) @@ -72,16 +87,12 @@ location = node.findall('file')[0].get('path') self.locations[table] = os.path.abspath( location ) locbase = os.path.abspath( os.path.split( self.locations['all_fasta'] )[0] ) - deferred = sa_session.query( model.DeferredJob ).filter_by( id=gitd.deferred_job_id ).first() params = deferred.params dbkey = params[ 'dbkey' ] basepath = os.path.join( os.path.abspath( app.config.genome_data_path ), dbkey ) intname = params[ 'intname' ] indexer = gitd.indexer workingdir = os.path.abspath( gitd.dataset.extra_files_path ) - fp = open( gitd.dataset.get_file_name(), 'r' ) - logloc = json.load( fp ) - fp.close() location = [] indexdata = gitd.dataset.extra_files_path if indexer == '2bit': diff -r 35d80be976914c49759e17068a2ba65b752eb3b1 -r 0bfd0f25956e3be0f04f68c9e05c1d07f2948f98 lib/galaxy/tools/genome_index/index_genome.py --- a/lib/galaxy/tools/genome_index/index_genome.py +++ b/lib/galaxy/tools/genome_index/index_genome.py @@ -40,15 +40,16 @@ self.genome = os.path.splitext( self.fafile )[0] with WithChDir( self.basedir ): if indexer not in self.indexers: - raise KeyError, 'The requested indexing function does not exist' + sys.stderr.write( 'The requested indexing function does not exist' ) + exit(127) else: with WithChDir( self.workingdir ): self._log( 'Running indexer %s.' % indexer ) result = getattr( self, self.indexers[ indexer ] )() if result in [ None, False ]: - self._log( 'Error running indexer %s, %s' % ( indexer, result ) ) + sys.stderr.write( 'Error running indexer %s, %s' % ( indexer, result ) ) self._flush_files() - return True + exit(1) else: self._log( self.locations ) self._log( 'Indexer %s completed successfully.' % indexer ) @@ -309,5 +310,7 @@ # Create archive. idxobj = ManagedIndexer( outfile, infile, working_dir, rsync_url, tooldata ) - idxobj.run_indexer( indexer ) - \ No newline at end of file + returncode = idxobj.run_indexer( indexer ) + if not returncode: + exit(1) + exit(0) \ No newline at end of file Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: jmchilton: Dynamic job runner bug fixes.
by Bitbucket 16 Aug '12

16 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/35d80be97691/ changeset: 35d80be97691 user: jmchilton date: 2012-08-16 17:58:01 summary: Dynamic job runner bug fixes. affected #: 2 files diff -r a42eae47ae877073a077527463beb32e251d7035 -r 35d80be976914c49759e17068a2ba65b752eb3b1 lib/galaxy/jobs/handler.py --- a/lib/galaxy/jobs/handler.py +++ b/lib/galaxy/jobs/handler.py @@ -360,7 +360,7 @@ def __init__( self, app ): self.app = app self.job_runners = {} - start_job_runners = ["local", "lwr", "dynamic"] + start_job_runners = ["local", "lwr"] if app.config.start_job_runners is not None: start_job_runners.extend( [ x.strip() for x in util.listify( app.config.start_job_runners ) ] ) if app.config.use_tasked_jobs: diff -r a42eae47ae877073a077527463beb32e251d7035 -r 35d80be976914c49759e17068a2ba65b752eb3b1 lib/galaxy/jobs/mapper.py --- a/lib/galaxy/jobs/mapper.py +++ b/lib/galaxy/jobs/mapper.py @@ -111,7 +111,7 @@ expand_function = self.__get_expand_function( expand_function_name ) return self.__invoke_expand_function( expand_function ) else: - raise Exception( "Unhandled dynamic job runner type specified - %s" % calculation_type ) + raise Exception( "Unhandled dynamic job runner type specified - %s" % expand_type ) def __cache_job_runner_url( self, params ): raw_job_runner_url = self.job_wrapper.tool.get_job_runner_url( params ) Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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