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commit/galaxy-central: carlfeberhard: new data for bwa_wrapper/bwa_color_wrapper functional tests
by Bitbucket 17 Aug '12

17 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/869163ea4294/ changeset: 869163ea4294 user: carlfeberhard date: 2012-08-17 20:39:32 summary: new data for bwa_wrapper/bwa_color_wrapper functional tests affected #: 3 files diff -r 3840c86e34b77bbd0d7c2da0c4ff3e5004dc0fe4 -r 869163ea42946aa5c394d79a3366898cf59beeeb test-data/bwa_wrapper_out3.sam --- a/test-data/bwa_wrapper_out3.sam +++ b/test-data/bwa_wrapper_out3.sam @@ -1,63 +1,63 @@ +@SQ SN:phiX174 LN:5386 +@RG ID:abcdefg LB:lib-mom-A PL:ILLUMINA SM:mom DS:descrip DT:2010-11-01 PI:400 @PG ID:bwa PN:bwa VN:0.5.9-r16 -@RG ID:abcdefg DS:descrip DT:2010-11-01 LB:lib-mom-A PI:400 PL:ILLUMINA SM:mom -@SQ SN:phiX174 LN:5386 -seq1 113 phiX174 340 37 18M = 322 -18 GGATTACTATCTGAGTCC II9(.+5$IIIIIII#II RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq1 177 phiX174 322 25 18M = 340 18 GATATTTTAAAGGAGCGT B&&I13A$G$*%$IIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:2C8A6 -seq10 129 phiX174 4168 37 18M = 4149 -19 AGGGCGTTGAGTTCGATA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq10 65 phiX174 4149 25 18M = 4168 19 ATTCTTTCTTTTCGTATC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:5G11G0 -seq11 129 phiX174 4091 37 18M = 4072 -19 ATCCCCAATGCTTGGCTT IIIII$%*$G$A31I&&B RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq11 65 phiX174 4072 37 18M = 4091 19 GCATTTCTACTCCTTCTC II#IIIIIII$5+.(9II RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:12T5 -seq12 129 phiX174 5365 25 18M = 5349 -16 GGATTGGCGTTTCCAACC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:0T9A7 -seq12 65 phiX174 5349 37 18M = 5365 16 CGCGCTTCGATAAAAATG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq13 129 phiX174 4093 25 18M = 4074 -19 CCCCAATCCTTGCCTTCC IIIAAIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:7G4G5 -seq13 65 phiX174 4074 37 18M = 4093 19 ATTTCTACTCTTTCTCAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:17A0 -seq14 129 phiX174 4016 37 3M1D15M = 3998 -18 TGATATTTTGACTTTGAG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:1 XG:i:1 MD:Z:3^T15 -seq14 65 phiX174 3998 37 18M = 4016 18 CCCTTTTGAATGTCACGC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:5C12 -seq15 129 phiX174 5216 37 5M2I11M = 5198 -18 TTACGAAACGCGACGCCG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:1 XG:i:2 MD:Z:16 -seq15 65 phiX174 5198 37 18M = 5216 18 CCAACTTACCAAGGTGGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:13C4 -seq16 129 phiX174 2897 37 18M = 2880 -17 TTATTTTTCTCCAGCCAC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:6G11 -seq16 65 phiX174 2880 37 10M1I7M = 2897 17 TCAGGGTATTAAAAGAGA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:1 XG:i:1 MD:Z:5T11 -seq17 129 phiX174 3053 25 18M = 3034 -19 AAACAATACTTTAGGCAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:0T9G7 -seq17 65 phiX174 3034 37 18M = 3053 19 GTGATGTGCTTGCTACCG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq1 113 phiX174 340 37 18M = 322 -18 GGATTACTATCTGAGTCC II9(.+5$IIIIIII#II RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq1 177 phiX174 322 25 18M = 340 18 GATATTTTAAAGGAGCGT B&&I13A$G$*%$IIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:2C8A6 +seq2 65 phiX174 141 37 18M = 159 18 ATTCGACCTATCCTTGCG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq2 129 phiX174 159 37 18M = 141 -18 CAGCTCGAGAAGCTCTTA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq3 65 phiX174 505 37 18M = 523 18 GTAACAAAGTTTGGATTG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq3 129 phiX174 523 37 18M = 505 -18 CTACTGACCGCTCTCGTG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq4 69 phiX174 945 0 * = 945 0 AGCCGCTCGTCTTTTATG IIIIIIIIIIIIIIIIII RG:Z:abcdefg +seq4 137 phiX174 945 23 18M = 945 0 TAGGTGGTCAACCATTTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:12A5 XA:Z:phiX174,+945,17M1S,2; +seq5 65 phiX174 4985 37 18M = 5003 18 CAGTTATATGGCTTTTGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:13G4 +seq5 129 phiX174 5003 37 18M = 4985 -18 TTTCTATGTGGCTTAATA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:13A4 +seq6 65 phiX174 925 37 11M1D7M = 944 19 AGGCGCTCGTCTTGGTAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:1 XG:i:1 MD:Z:11^T7 +seq6 129 phiX174 944 37 18M = 925 -19 GTAGGTGGTCAACAATTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq7 65 phiX174 943 25 18M = 960 17 TGTAGGTGGTCAACCAAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:14A1T1 XA:Z:phiX174,+943,13M1I4M,2; +seq7 129 phiX174 960 37 18M = 943 -17 TTTAATTGCAGGGGCTTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq8 69 phiX174 1715 0 * = 1715 0 ACACCCGTCCTTTACGTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg +seq8 137 phiX174 1715 37 18M = 1715 0 ATGCGCTCTATTCTCTGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:10A7 +seq9 65 phiX174 2596 37 18M = 2613 17 GCCGCTATTCAGGTTGTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:7A10 +seq9 129 phiX174 2613 37 18M = 2596 -17 TTCTGTTGGTGCTGATAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq10 65 phiX174 4149 25 18M = 4168 19 ATTCTTTCTTTTCGTATC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:5G11G0 +seq10 129 phiX174 4168 37 18M = 4149 -19 AGGGCGTTGAGTTCGATA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq11 65 phiX174 4072 37 18M = 4091 19 GCATTTCTACTCCTTCTC II#IIIIIII$5+.(9II RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:12T5 +seq11 129 phiX174 4091 37 18M = 4072 -19 ATCCCCAATGCTTGGCTT IIIII$%*$G$A31I&&B RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq12 65 phiX174 5349 37 18M = 5365 16 CGCGCTTCGATAAAAATG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq12 129 phiX174 5365 25 18M = 5349 -16 GGATTGGCGTTTCCAACC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:0T9A7 +seq13 65 phiX174 4074 37 18M = 4093 19 ATTTCTACTCTTTCTCAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:17A0 +seq13 129 phiX174 4093 25 18M = 4074 -19 CCCCAATCCTTGCCTTCC IIIAAIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:7G4G5 +seq14 65 phiX174 3998 37 18M = 4016 18 CCCTTTTGAATGTCACGC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:5C12 +seq14 129 phiX174 4016 37 3M1D15M = 3998 -18 TGATATTTTGACTTTGAG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:1 XG:i:1 MD:Z:3^T15 +seq15 65 phiX174 5198 37 18M = 5216 18 CCAACTTACCAAGGTGGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:13C4 +seq15 129 phiX174 5216 37 5M2I11M = 5198 -18 TTACGAAACGCGACGCCG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:1 XG:i:2 MD:Z:16 +seq16 65 phiX174 2880 37 10M1I7M = 2897 17 TCAGGGTATTAAAAGAGA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:5T11 +seq16 129 phiX174 2897 37 18M = 2880 -17 TTATTTTTCTCCAGCCAC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6G11 +seq17 65 phiX174 3034 37 18M = 3053 19 GTGATGTGCTTGCTACCG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq17 129 phiX174 3053 25 18M = 3034 -19 AAACAATACTTTAGGCAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:0T9G7 +seq18 73 phiX174 4088 37 18M = 4088 0 TCAATCCCCCATGCTTGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:9A8 seq18 133 phiX174 4088 0 * = 4088 0 CCGTTCCATAAGCAGATG IIIIIIIIIIIIIIIIII RG:Z:abcdefg -seq18 73 phiX174 4088 37 18M = 4088 0 TCAATCCCCCATGCTTGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:9A8 -seq19 129 phiX174 3324 37 18M = 3304 -20 GAGCGTCCTGGTGCTGAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:6G11 -seq19 65 phiX174 3304 37 18M = 3324 20 TTCCTGCGCTTAATGCTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:6A11 -seq2 129 phiX174 159 37 18M = 141 -18 CAGCTCGAGAAGCTCTTA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq2 65 phiX174 141 37 18M = 159 18 ATTCGACCTATCCTTGCG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq20 129 phiX174 1100 37 18M = 1082 -18 ACTCCGGTTATCGCTGGC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq20 65 phiX174 1082 37 18M = 1100 18 CTTATTACCATTTCAACT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq21 129 phiX174 1363 37 18M = 1344 -19 TAAGCATTTGGTTCAGGG IIIII$%*$G$A31I&&B RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:10T7 -seq21 65 phiX174 1344 37 18M = 1363 19 CTGATACCAATAAAACCC II#IIIIIII$5+.(9II RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:15T2 -seq22 137 phiX174 5215 37 18M = 5215 0 GTTACGACGCGACGCCGT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq19 65 phiX174 3304 37 18M = 3324 20 TTCCTGCGCTTAATGCTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6A11 +seq19 129 phiX174 3324 37 18M = 3304 -20 GAGCGTCCTGGTGCTGAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6G11 +seq20 65 phiX174 1082 37 18M = 1100 18 CTTATTACCATTTCAACT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq20 129 phiX174 1100 37 18M = 1082 -18 ACTCCGGTTATCGCTGGC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq21 65 phiX174 1344 23 18M = 1363 19 CTGATACCAATAAAACCC II#IIIIIII$5+.(9II RG:Z:abcdefg XT:A:U NM:i:1 SM:i:23 AM:i:23 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:15T2 XA:Z:phiX174,+1344,15M1D3M,2; +seq21 129 phiX174 1363 37 18M = 1344 -19 TAAGCATTTGGTTCAGGG IIIII$%*$G$A31I&&B RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:10T7 seq22 69 phiX174 5215 0 * = 5215 0 AATCAAACTTACCAAGGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg -seq23 129 phiX174 4308 25 18M = 4289 -19 TTTAATAACCCTATAGAC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:0A8A8 -seq23 65 phiX174 4289 37 18M = 4308 19 TGTGCTTCCCCAACTTGA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:6C11 -seq24 129 phiX174 4101 37 18M = 4084 -17 CTTGGCTTCCCTAAGCAG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:10A7 -seq24 65 phiX174 4084 37 18M = 4101 17 TTTCTCAATCCCCAATGC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq25 129 phiX174 537 37 18M = 520 -17 CGTGCTCGTTGCTGCGTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:9C8 -seq25 65 phiX174 520 37 18M = 537 17 TTGCTACTGACCGCTCTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:17C0 -seq26 129 phiX174 1994 37 18M = 1976 -18 AAGGATGTTTTCCGTTCT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq26 65 phiX174 1976 37 18M = 1994 18 CCGCGTGAAATTTCTATG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq27 129 phiX174 2614 37 3M1D15M = 2598 -16 TGTTTGGTGCTGATATTG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:1 XG:i:1 MD:Z:1C1^G15 -seq27 65 phiX174 2598 37 18M = 2614 16 CGCTAATCAAGTTGTTTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:9G8 -seq28 129 phiX174 2906 37 18M = 2890 -16 TCCAGCCACTAAAGTGAG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:10T7 -seq28 65 phiX174 2890 25 18M = 2906 16 AAAGAGATTATTTGTCGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:16T0C0 +seq22 137 phiX174 5215 37 18M = 5215 0 GTTACGACGCGACGCCGT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq23 65 phiX174 4289 37 18M = 4308 19 TGTGCTTCCCCAACTTGA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6C11 +seq23 129 phiX174 4308 25 18M = 4289 -19 TTTAATAACCCTATAGAC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:0A8A8 +seq24 65 phiX174 4084 37 18M = 4101 17 TTTCTCAATCCCCAATGC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq24 129 phiX174 4101 37 18M = 4084 -17 CTTGGCTTCCCTAAGCAG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:10A7 +seq25 65 phiX174 520 37 18M = 537 17 TTGCTACTGACCGCTCTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:17C0 +seq25 129 phiX174 537 37 18M = 520 -17 CGTGCTCGTTGCTGCGTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:9C8 +seq26 65 phiX174 1976 37 18M = 1994 18 CCGCGTGAAATTTCTATG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq26 129 phiX174 1994 37 18M = 1976 -18 AAGGATGTTTTCCGTTCT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq27 65 phiX174 2598 37 18M = 2614 16 CGCTAATCAAGTTGTTTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:9G8 +seq27 129 phiX174 2614 37 3M1D15M = 2598 -16 TGTTTGGTGCTGATATTG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:1 XG:i:1 MD:Z:1C1^G15 +seq28 65 phiX174 2890 25 18M = 2906 16 AAAGAGATTATTTGTCGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:16T0C0 +seq28 129 phiX174 2906 37 18M = 2890 -16 TCCAGCCACTAAAGTGAG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:10T7 +seq29 73 phiX174 5339 37 18M = 5339 0 CAAATTAATGCGCGCTTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6T11 seq29 133 phiX174 5339 0 * = 5339 0 GATAATGATTGGGGTATC IIIIIIIIIIIIIIIIII RG:Z:abcdefg -seq29 73 phiX174 5339 37 18M = 5339 0 CAAATTAATGCGCGCTTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:6T11 -seq3 129 phiX174 523 37 18M = 505 -18 CTACTGACCGCTCTCGTG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq3 65 phiX174 505 37 18M = 523 18 GTAACAAAGTTTGGATTG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq30 129 phiX174 4108 37 18M = 4091 -17 ACCATAAGCAGATGGATA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:0T17 -seq30 65 phiX174 4091 37 18M = 4108 17 ATCCCCTATGCTTGGCTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:6A11 -seq4 137 phiX174 945 37 18M = 945 0 TAGGTGGTCAACCATTTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:12A5 -seq4 69 phiX174 945 0 * = 945 0 AGCCGCTCGTCTTTTATG IIIIIIIIIIIIIIIIII RG:Z:abcdefg -seq5 129 phiX174 5003 37 18M = 4985 -18 TTTCTATGTGGCTTAATA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:13A4 -seq5 65 phiX174 4985 37 18M = 5003 18 CAGTTATATGGCTTTTGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:13G4 -seq6 129 phiX174 944 37 18M = 925 -19 GTAGGTGGTCAACAATTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq6 65 phiX174 925 37 11M1D7M = 944 19 AGGCGCTCGTCTTGGTAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:1 XG:i:1 MD:Z:11^T7 -seq7 129 phiX174 960 37 18M = 943 -17 TTTAATTGCAGGGGCTTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq7 65 phiX174 943 25 18M = 960 17 TGTAGGTGGTCAACCAAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:14A1T1 -seq8 137 phiX174 1715 37 18M = 1715 0 ATGCGCTCTATTCTCTGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:10A7 -seq8 69 phiX174 1715 0 * = 1715 0 ACACCCGTCCTTTACGTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg -seq9 129 phiX174 2613 37 18M = 2596 -17 TTCTGTTGGTGCTGATAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 -seq9 65 phiX174 2596 37 18M = 2613 17 GCCGCTATTCAGGTTGTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:7A10 +seq30 65 phiX174 4091 37 18M = 4108 17 ATCCCCTATGCTTGGCTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6A11 +seq30 129 phiX174 4108 37 18M = 4091 -17 ACCATAAGCAGATGGATA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:0T17 diff -r 3840c86e34b77bbd0d7c2da0c4ff3e5004dc0fe4 -r 869163ea42946aa5c394d79a3366898cf59beeeb test-data/bwa_wrapper_out6.sam --- a/test-data/bwa_wrapper_out6.sam +++ b/test-data/bwa_wrapper_out6.sam @@ -1,49 +1,46 @@ -427_1253_1057_F3 0 chrX_part 14947 37 49M * 0 0 TTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTTTTCATGTGTCT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]VZ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 -427_1299_965_F3 16 chrX_part 13217 25 49M * 0 0 GGGATGCTCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAGTTCTG ][]]]]Y]]]]Z]]]]]]]]]Z]]]]Y]]]]]]]]Y]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:7C41 -427_12_1018_F3 4 * 0 0 * * 0 0 CTCTTCTCCTCCGGACTAGAGGCCCGGGCAATCAAGGCTGCGTAGACGTA >?<;5@:>>5>7:?<7@><=:>?92<?5>=;@@>?2<?>:?<9<4>56?@ RG:Z:474747 +@SQ SN:chrX_part LN:37500 +@RG ID:474747 LB:lib-child-1-A PL:SOLID SM:child-1 DS:description DT:2011-03-14 PI:200 +@PG ID:bwa PN:bwa VN:0.5.9-r16 427_12_390_F3 4 * 0 0 * * 0 0 AAGGGAGTGGTGCTGGTGGGAGGCAATTTGTCGGACCTGGGAAGCGAGTC BBB>=;@@A6<A;=>=A?>??@A58@B>9>>@?70?@<=>>@A9/5?=25 RG:Z:474747 427_12_550_F3 4 * 0 0 * * 0 0 CGATCTCTGCAACTTCGTGCGCAGGCGATGGGGGGGAAAATGAACGGATA 8A=?<BA@=;?A;?><B?;:5@.<:7?9;6<A62<@;8<==@3:>;=339 RG:Z:474747 427_12_941_F3 4 * 0 0 * * 0 0 GGGCCAAAGTAAACGCTAATCGAGGAGGACAAAGTAAGGAAGGCGCCTGT B@72=>?A:;<:?>?94B??;3A<?1@<3=<A?8>A6?>=>7A/>=07<@ RG:Z:474747 +427_12_1018_F3 4 * 0 0 * * 0 0 CTCTTCTCCTCCGGACTAGAGGCCCGGGCAATCAAGGCTGCGTAGACGTA >?<;5@:>>5>7:?<7@><=:>?92<?5>=;@@>?2<?>:?<9<4>56?@ RG:Z:474747 427_13_422_F3 4 * 0 0 * * 0 0 AATAACGAAGCGTGTGTGTTAGCGGGAGAGCCGGGCCCCTTCCCGTACGT 9>A2,9@9<8<=;;7=7:>@1<:?37<1>1690>7=<:=A/>53.::<=/ RG:Z:474747 427_13_494_F3 4 * 0 0 * * 0 0 CGACTACCCCTACCGGTCACCGCTACGGTGAGGCTAAGCTCTTCCAGACG .>>?@;A@?7?@<>39?>=7:==76;=;=65@:::9?8?3=@8=::@2<. RG:Z:474747 427_13_606_F3 4 * 0 0 * * 0 0 TTTAACGCGATAATCCTTCGAAGGAAAAGAAGTGACTTTCCGTACATACC BB?A?@A??>B@A@<=@A==A>>>>AA@7<?:B=9<@A@A@2@>8><;<= RG:Z:474747 427_13_861_F3 4 * 0 0 * * 0 0 CGAGGTGCAGGCCTGCTCTGGGGACCCACTGTGACCAGGCGGCCTGCCAC =>>@<@>BB>>58A=@A<BABA:=>@B:==?A9<AA@7::@;??:A?;2> RG:Z:474747 427_13_961_F3 4 * 0 0 * * 0 0 GACGGGAGACGCTGCGATCGCACCTTAATGGGGGACCGGATGCACAAAAG @BBBBB@BB@B>BBAB@B@AB@ABAABBA?B?B@>@@BA=A?A:<>BBB3 RG:Z:474747 -427_1444_687_F3 16 chrX_part 25682 37 49M * 0 0 TCATTCTCAGCAAACTATCGCAAGGACAAAAAACCAAACACCGCATGTT ]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -427_14_1010_F3 4 * 0 0 * * 0 0 GCTGCTGTGGCCGGGCGCACCCAGACAGGTAGAAAGCCGACTCACCACGT @??A><@=ABA@?A?A@A??AB@AA@=<?B;<@?A<94?A=5;:@@2?@9 RG:Z:474747 427_14_270_F3 4 * 0 0 * * 0 0 GCAGATGCGTGGAGCAACGGTGGTCTGTAGATCGTCAGGATCTGAAACCA A=A@?BB>@9@BAA89>A@:A@@>2@A;383B><;:;>=1=8B:<>=?8= RG:Z:474747 427_14_376_F3 4 * 0 0 * * 0 0 TCACACGCAGGGCCCCGTACGGAGAATACTGCTCAATGAAAATGGAGGGG B9??@BA@;?BB@@>AA?:?>A><=<A:4=5<?;=<?;?:95=61;<:<2 RG:Z:474747 427_14_602_F3 4 * 0 0 * * 0 0 GGCCGGTTGGTCGACTAGGCAGGCCGACAATGCCTGAACATACTAGGGCC ,B=7==A:9;AA45,=:9/.2<;58>9806:=>:<8=877?=9198>:2: RG:Z:474747 427_14_665_F3 4 * 0 0 * * 0 0 CATACGAGGGAGTCTCTAGCATAAAGCTGGGTCCCCTGACATTGACCTGA <A@@>B7<A5@>@>>>;<@68,9@;<-<<:>9?@?>6.A65=;=8569;5 RG:Z:474747 -427_1522_8_F3 0 chrX_part 12254 0 49M * 0 0 ACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCAC )]]]]]]]]]]]]]PU]]][]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 XM:i:3 XO:i:0 XG:i:0 MD:Z:34C14 XA:Z:chrX_part,+26921,49M,3; +427_14_1010_F3 4 * 0 0 * * 0 0 GCTGCTGTGGCCGGGCGCACCCAGACAGGTAGAAAGCCGACTCACCACGT @??A><@=ABA@?A?A@A??AB@AA@=<?B;<@?A<94?A=5;:@@2?@9 RG:Z:474747 +427_15_423_F3 4 * 0 0 * * 0 0 GCTGGAGGAGAAAGGGGGGACCCGCAATCGAGCGTCCGATAATGAAATGG >/B@=<A=??@B>A>B@@>9?@=A6@B@9?5@6A7A@>@A?=?A/@@A?= RG:Z:474747 +427_15_646_F3 4 * 0 0 * * 0 0 CAGTTCGCTTGGTCAATCAATATAGAGAACCTGGGGAGTAGTGTCCGGAG ?@=?>=A?@??B876:@65.B<914;;<06=?914:67997;5<:/7771 RG:Z:474747 +427_15_872_F3 4 * 0 0 * * 0 0 CGGGTAGACTTTAGTACCTAGACGAAGGGAGTGACATGACGTCGCGTACA <:??A@B@B==>@>A:6=?;5<::30<==63@;;1?=;A5,=7<,4;6@0 RG:Z:474747 427_15_1039_F3 4 * 0 0 * * 0 0 AGAGTCAACTGAAGCTTCCGAGTCGTGAACGGGGGGAGGAGAGGGAAGGC BBB@@@B?A?ABB><A>?9=:=<:@:?>51:AA>?87>?979<>><>>=< RG:Z:474747 427_15_1070_F3 4 * 0 0 * * 0 0 CTACTCCCTGCATTAGATACTGGAGCTCGGCTAGAGGGATGGCGTTAAAG =>A<@><?BAA?A?>?4??=;>?@>??=:@<6?98==><<:;<8A:7=@5 RG:Z:474747 427_15_1081_F3 4 * 0 0 * * 0 0 GCTCCTCCACGATTAATCGTTGGGGTGCAATGAGAAAACAGCCAATGGCC @=AAAB@?@>?B@?=BB@?@B=@>;B@3:?BA39?>@7==<<<A?A<1A? RG:Z:474747 -427_15_423_F3 4 * 0 0 * * 0 0 GCTGGAGGAGAAAGGGGGGACCCGCAATCGAGCGTCCGATAATGAAATGG >/B@=<A=??@B>A>B@@>9?@=A6@B@9?5@6A7A@>@A?=?A/@@A?= RG:Z:474747 -427_15_646_F3 4 * 0 0 * * 0 0 CAGTTCGCTTGGTCAATCAATATAGAGAACCTGGGGAGTAGTGTCCGGAG ?@=?>=A?@??B876:@65.B<914;;<06=?914:67997;5<:/7771 RG:Z:474747 -427_15_872_F3 4 * 0 0 * * 0 0 CGGGTAGACTTTAGTACCTAGACGAAGGGAGTGACATGACGTCGCGTACA <:??A@B@B==>@>A:6=?;5<::30<==63@;;1?=;A5,=7<,4;6@0 RG:Z:474747 -427_16_1107_F3 4 * 0 0 * * 0 0 TGTGTAAGTGAGACACGAGAAGCAAGAACTGATGCCCTGCAGGGTTTAGG <+>B><:;A@B?:>>:A7B5;B@?B>8;:>8=B:B@=;@25A9A=>@1A: RG:Z:474747 427_16_264_F3 4 * 0 0 * * 0 0 CCCGATCCTAGGCAGAATCGAGAGAGACCACAACCCGCGAAAACCATTGC @<>?@@?AA?@??@>>?;:A>>A=?>=?>?:A>@@@:A8@@@:>/@>A4= RG:Z:474747 427_16_565_F3 4 * 0 0 * * 0 0 AGCTATGGAATACCAAGACATCCAAGGAACTACTGCCGAAGGTTCCGGAG BB1AABB9@@B>3>=@@,?AB<8A>@@9<=BA8<<>>4A??@:??<?6@< RG:Z:474747 -427_17_1027_F3 4 * 0 0 * * 0 0 CAGTGCAATGGGAGTAAAGCAAATTCGGCAGCCCGTGGCCGAACCGCTTG A@@BAB=>B>BAA?5>=AA8:@B@;=@?@9:>BB::?@A54=B?<0<B@: RG:Z:474747 +427_16_1107_F3 4 * 0 0 * * 0 0 TGTGTAAGTGAGACACGAGAAGCAAGAACTGATGCCCTGCAGGGTTTAGG <+>B><:;A@B?:>>:A7B5;B@?B>8;:>8=B:B@=;@25A9A=>@1A: RG:Z:474747 +427_17_46_F3 4 * 0 0 * * 0 0 CCAATGAATGAAACAGGGTACCCGCGAGCGCCTGCTGAGCTGACAGTCTC :.>A:@>@?7A@<=2?;6?;>;99=<:8;95>0:><14;@4:><:,;:8? RG:Z:474747 427_17_342_F3 4 * 0 0 * * 0 0 AGCTGGAGCTGCTGCCACGGACAAGGTCGGAGCTGAGGCTGGCTGGACTA BA?A?BB>>ABB@;;AA@@>AA>=ABB1??:B6>?>B72>@B49>?@3<< RG:Z:474747 427_17_446_F3 4 * 0 0 * * 0 0 TATGCCGTGAGACGGGGGGAAACAGACCCTACCCCGATGTATAAGGCCGG =B?>8>BA?=>B;?;>A;:<=?937;?=2;6:==;9=@3?9;51;9:149 RG:Z:474747 -427_17_46_F3 4 * 0 0 * * 0 0 CCAATGAATGAAACAGGGTACCCGCGAGCGCCTGCTGAGCTGACAGTCTC :.>A:@>@?7A@<=2?;6?;>;99=<:8;95>0:><14;@4:><:,;:8? RG:Z:474747 427_17_917_F3 4 * 0 0 * * 0 0 AAGACTACGCGTTAGGCCAAGAGAAAGACTCAAGAGACGACCTCTAAGAT @@=???A6=-;A:3<@?866@94:20<11@3;19:=:/:9<<45B@:48B RG:Z:474747 -427_1891_897_F3 16 chrX_part 26846 37 49M * 0 0 GGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATC ]]]]]]]]]]]]]]]QW]]]Z]]]]]]]]]PX]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +427_17_1027_F3 4 * 0 0 * * 0 0 CAGTGCAATGGGAGTAAAGCAAATTCGGCAGCCCGTGGCCGAACCGCTTG A@@BAB=>B>BAA?5>=AA8:@B@;=@?@9:>BB::?@A54=B?<0<B@: RG:Z:474747 427_18_267_F3 4 * 0 0 * * 0 0 CTGGCACCGAACGGAGGAAGAAATTGCGTAGATTACAGTAATCAGAAGAC AB@A;>@A@>AAAB:8B<>>@B@A=@?=@;=A<A3>?;@@?<:>+A?;A. RG:Z:474747 427_18_481_F3 4 * 0 0 * * 0 0 GGCTCGCCCCAGTATCGACGTCGTATGAGAGATGACGAGGCCCGGGCGAG AB>?;B@A>=AAA@@@A?=6B=><=B=<8>=7A2=<==5;@5>7<=3=>; RG:Z:474747 427_18_706_F3 4 * 0 0 * * 0 0 CTCTATATGGAAGGTTACTACTCAGTAACCTTAGGGACCAAGAACCGGTT >AAA@B?BAABAAAAA@@@A?B?>=B?@>>B@6??@><@@?:?A;<?=?? RG:Z:474747 427_18_834_F3 4 * 0 0 * * 0 0 GGGACCCGACCTAGGACGGACAAAGACAGGGACGACAGATATACGATTCA @@@@><?A><@A?@7@A@@6=><?;<;;7@>=?=:<:<;>=6=/:A?B?4 RG:Z:474747 427_18_846_F3 4 * 0 0 * * 0 0 GGACGCGTCACCAGAAAAACTAGGGGACGGTCCACGACCATGACGGGGAG BABB>BBBB7BBA@@ABBB1<BABA<B<A89BB?21A@@22@@A?>A@=? RG:Z:474747 -427_1927_689_F3 0 chrX_part 26924 0 49M * 0 0 AGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATC ]]ZY]]]Z[]]]ZROQFMVZ]ZYUV]ZXSLTWZUT]]]]]]Z\[ZXW[T RG:Z:474747 XT:A:R CM:i:1 X0:i:3 XM:i:2 XO:i:0 XG:i:0 MD:Z:34T14 XA:Z:chrX_part,+14818,49M,2;chrX_part,+12257,49M,2; -427_19_1049_F3 4 * 0 0 * * 0 0 TCCGCTTGGAACATACTAAAGGAGAGTATATAGATGACCAGGAAAAGCTT ?<>@:A?@B>B=>@@?>AA?B>@@@BB35@B>98<>A5/AB><<BB>8<: RG:Z:474747 427_19_11_F3 4 * 0 0 * * 0 0 CAGCCCACATGCACCCACTGGGAAGGCCACCCATGAGAAACTCCACGATC =1:<4>?><;=?><1?:>?7>=>=:<=<99:><<55;>>,@=>93>/15: RG:Z:474747 427_19_137_F3 4 * 0 0 * * 0 0 AAGCTGACGCTACCACGGACAACAGCGGTCAAGGCCGTCAGGCGAAGCGG ?78;?@?<>;=AA=;7?9<8;=<:<8><968;<9;:<:;::<53;=7+85 RG:Z:474747 427_19_296_F3 4 * 0 0 * * 0 0 CCAGAAACCTCAGCAACACACCACCTAGGCCCCCAGGGTCGGAAGATGCA B@BABBB@BBBBAA@<AAAB>@A@?AA@?@>A=?9>?>?@@@?@=?A<@@ RG:Z:474747 427_19_324_F3 4 * 0 0 * * 0 0 TGGACGATTTAATGGCAGGGAAGTGAGACAAGACTGGGGTCTGCGAAAAA A;=?3A>>:>>:<87:8483>>627=;40596=885:66>3810/843:9 RG:Z:474747 427_19_533_F3 4 * 0 0 * * 0 0 GAAAGCTCGATCGTTCGACTTTTCTTCGTCTGAGTCAATCAGACTTGGCA BA@@?>@A?>A@@@@?@<=BAB?>BA?<>3B?<;@?AB?7><@@@AA6?- RG:Z:474747 427_19_899_F3 4 * 0 0 * * 0 0 CATACCGTAGCCCAGGCAAGGAGACGCTCAGTGTAACAAGACGCAGTCGA @??B>=@<A?;@5AA8=6@B<:3A>6=57@9A2?A=;:A?4>,9A7=48@ RG:Z:474747 +427_19_1049_F3 4 * 0 0 * * 0 0 TCCGCTTGGAACATACTAAAGGAGAGTATATAGATGACCAGGAAAAGCTT ?<>@:A?@B>B=>@@?>AA?B>@@@BB35@B>98<>A5/AB><<BB>8<: RG:Z:474747 427_20_363_F3 4 * 0 0 * * 0 0 GACGTCGAGATACGGTACCCGGGCTATATTTTAGACGACTTAAAACTAGA AAAA>@B>A+BB@A7B@?<==?>=@.@9?=>A=<<1><>>>=@@?74?.@ RG:Z:474747 427_20_407_F3 4 * 0 0 * * 0 0 ATAACGGACACCTAAGAAGAGGGAGTTAACATCCAGCGTAGGGCGCGTAC BBBB?BBB?ABBBBABB@>BBB?@?AB?@@2B?@;@94B@AB??;/?@>= RG:Z:474747 427_20_608_F3 4 * 0 0 * * 0 0 ACAGCACGCGGCTGCAGGAGGGAGAGAGGGGCAAGACGGACGGGCCTGTG B@9<AB?35>@>9?=AB7:@@A6<@A=>=A@@=<=?@<;:=<-<@:=0=: RG:Z:474747 @@ -64,38 +61,34 @@ 427_23_874_F3 4 * 0 0 * * 0 0 GGAGAACTCTAAGAAAGAACTTTAAACCAGTCTTGCCCCCCGATCGTGAA <@ABBBAB=AABAAA@@BA<>A@@B?A??=A@B@@@B<BBB<=<@:>?>: RG:Z:474747 427_23_986_F3 4 * 0 0 * * 0 0 CGGTCTGTTTTGCGGGACACGAGGTCGTGAACTAGACTGCGGGTGCATCG @6=??@<<><>@A@:<=<;==>@;3=>8=;>::?8@?9=99=4:6@<67; RG:Z:474747 427_23_993_F3 4 * 0 0 * * 0 0 AGACTCCGGGACAATGAGTCCAGCAGAGGGTGATGAAGGAACGAACGGAA @>BAAA?BBB@?B@BA@ABAB?B?A@A?AAB@<AA?>@=AA<ABB@:@AA RG:Z:474747 -427_24_1040_F3 4 * 0 0 * * 0 0 CCATTTTCCCAGTGAGCACCCTTGCTTCCAATCAGGGGACTGGCTCAGAA 45/2<9A@A93A7<5:;@6=<A:7=:B5740@<698=3<:8:8-:5,220 RG:Z:474747 427_24_476_F3 4 * 0 0 * * 0 0 CAGCAGGTCCAAACGTGGATCCGCGGGCGGAGAAGGCGACACAGGGCAAA =B>:>>A<<76===6=?;3=;<<45<=6,876968:-256;693464<<< RG:Z:474747 427_24_880_F3 4 * 0 0 * * 0 0 CGTAGGTAGGCCAGGCGAGGTATTCTATCTGGGCGCAATTACCAGGAACA AAA+AB@?;@AA?;?ABA>AB>B:=BAA+@=A>4?>A?=@4?;2>9A=1? RG:Z:474747 427_24_952_F3 4 * 0 0 * * 0 0 GGTTTTTCCTTGTTCATGTGTAATCCAGTATGGAGGGCCAAAGAGAGTCC @?B>@9?@-16=9<54:-<53=6>:2;.41/<176,>8137;5:.9=905 RG:Z:474747 +427_24_1040_F3 4 * 0 0 * * 0 0 CCATTTTCCCAGTGAGCACCCTTGCTTCCAATCAGGGGACTGGCTCAGAA 45/2<9A@A93A7<5:;@6=<A:7=:B5740@<698=3<:8:8-:5,220 RG:Z:474747 +427_25_60_F3 4 * 0 0 * * 0 0 TGAGGTATGGGAGTCGTAGGCGCACTCGAGGCGCCTGAGGAAACACCCTC A/>>=?==>:>>8?:>=.=>9>84:@:96<7>6<=<93<<5;>:8==.1< RG:Z:474747 427_25_234_F3 4 * 0 0 * * 0 0 TATCAAGCAACGGGTGTATGGGGGAAGAGAAAGGCGATCCCACCAGATCA 0>@</1A7<+8A64::>4<9<@88=9>94<8@:7<9=>;?8:;195:<5> RG:Z:474747 -427_25_60_F3 4 * 0 0 * * 0 0 TGAGGTATGGGAGTCGTAGGCGCACTCGAGGCGCCTGAGGAAACACCCTC A/>>=?==>:>>8?:>=.=>9>84:@:96<7>6<=<93<<5;>:8==.1< RG:Z:474747 427_25_854_F3 4 * 0 0 * * 0 0 AGCACTCGCGTAGACAATCGACAGCCCTGACCGAGCGAATAAGGGCTGAA AA@BBB?AB=B@@@>=;B;@4?B9?=@B;@6A?9=<:A@A6:73@55>2> RG:Z:474747 427_26_256_F3 4 * 0 0 * * 0 0 GAGGGCCGGGGGGCGATCGAAGAGTCTCGAGACGAGGCCGTGTCTCGGAA BB=BAA@@BABB?7A2>-@@@>@?AAB=@8@?9><@>:7>@>:7@@45+8 RG:Z:474747 427_26_331_F3 4 * 0 0 * * 0 0 TCGCTCGCGCTAAGATACAAGGAAGCTCAACTTTTAGCGCGCATAGGCTG =73:><A;=9?<>;/A;;:<=?276:<19;;A<7<<9<3:9:-.<<>.74 RG:Z:474747 427_26_583_F3 4 * 0 0 * * 0 0 CACGCGTTATGGAGCTCGGCGAGGGGACTAGGAGCAGAGTCTGCTTAGAT AAA@ABBBB?@B@?=B;>AA?=?@A@>7A@AA>>@==@?A=B==BB7:AA RG:Z:474747 427_26_646_F3 4 * 0 0 * * 0 0 AGAAACTCTGAGCCGGACCAAAATTAGGAGATCAAGAACCCCGGGAGGCC @@AAA?A>??BB@@A?;A@=BB??:AA7=8AB:><=<==@B;:9:A:>?5 RG:Z:474747 427_26_857_F3 4 * 0 0 * * 0 0 TTAGCCGTCCGCTGTATCAATCCAGTGTAGTCGTCGTAAACGTAACGTAC >A?=>@@<><=<=><@?7<9@><?:@;@8:@@;6<8>>A9=1/A??5:@. RG:Z:474747 -427_27_1002_F3 4 * 0 0 * * 0 0 GATGCCGATAATTACACACCCCCAAGTGCGAAGGCAAAGGATGGCTTCCC >?<>B<A<=?<B;;9@A9>?@A:A=<A5<3=B:;:AA==0A>3<37A>=5 RG:Z:474747 427_27_160_F3 4 * 0 0 * * 0 0 TTAAACGTATTCTAGTACCTAAAGGAAGCTGGGCTCACAACGTTTAAAAG >>AA@@-@A?A<>A;@647A=<>9=?;:7@8;3>@2:5@<:7@?A99:?4 RG:Z:474747 427_27_231_F3 4 * 0 0 * * 0 0 GGCGGGCAAGGGCTGGGGATGGAGACGACTACTTTCCAAAGTCGGCATGC ABAA?AB=>>@B>@?@@6;B@A5;@@@=8=>;:<A?@.?;<@;8=>9<5< RG:Z:474747 427_27_369_F3 4 * 0 0 * * 0 0 CAATGCCCCTGAAATGGACGTACGCCTAACCGGAGCCGGCTGGGCTACGC ;3:7?@=34?A<3/@A?14<A8;4>7=31<98.0:<<54<77659?4.8< RG:Z:474747 427_27_778_F3 4 * 0 0 * * 0 0 GCAAATGCCGAAGAAACAGAGAGAGGGCACGGCAGGACACCACCTAGACG AA:=6AB=;=>?;=:@>6=;>>:8=@@=;7A@><?A@?=<???;@?===7 RG:Z:474747 427_27_939_F3 4 * 0 0 * * 0 0 AAGGAGGGACACAAAACCCCGGCTAATCAGAGAGCAAGGGGAGTCGTCGA 2:53=@:<@9:<?@??28>@<5:A<@>;02=6867A=<<@58->;:72/2 RG:Z:474747 -427_28_1127_F3 4 * 0 0 * * 0 0 GTCCGGGACCTCTTACCCAACACAAAGGCCGAGACCCGTTGCAACTGGCG ??BBBB?@BAB@BABA@?BBA>@BBAA=?>BB>?@A=:?@9@BA@78?B- RG:Z:474747 +427_27_1002_F3 4 * 0 0 * * 0 0 GATGCCGATAATTACACACCCCCAAGTGCGAAGGCAAAGGATGGCTTCCC >?<>B<A<=?<B;;9@A9>?@A:A=<A5<3=B:;:AA==0A>3<37A>=5 RG:Z:474747 427_28_593_F3 4 * 0 0 * * 0 0 TGGCAGAATATTACCATCTAGAGAGAAAAGAGGGTTAGACGCAGGCTAGA 4B;?>@@==;A@=;;A?-;?@@:=?BB95><@<4AA<;>:?97<>@?<89 RG:Z:474747 427_28_739_F3 4 * 0 0 * * 0 0 CAGCTCCCCGCGAAGCTCTCATTACCTCGGGGTGACTACTAAACGTTGAG 6B=@AA<;=3:B?@65@8@>5A:=>@A859<>99>4A</?:;?596A348 RG:Z:474747 427_28_798_F3 4 * 0 0 * * 0 0 TACGTAAACCACCTCGCCCGCACTCCAAAACCGAGACCTTCCCACATCAG B@@@@???<36?8:::<=?6-;89<;;:4994<.;5>A5:43>+>0+<11 RG:Z:474747 427_28_923_F3 4 * 0 0 * * 0 0 CAGCCTTGATCCTACGCTGCGCTGCCGCGAGCGTGGACGATGCTCGAGCC ?B=A?B@>A8BB@>>@>B;6>>AA;A8=:2@:::8?8>66A4?<:?4?;; RG:Z:474747 -427_292_217_F3 0 chrX_part 14846 37 49M * 0 0 GTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTTTCCTGACTT ]]]]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +427_28_1127_F3 4 * 0 0 * * 0 0 GTCCGGGACCTCTTACCCAACACAAAGGCCGAGACCCGTTGCAACTGGCG ??BBBB?@BAB@BABA@?BBA>@BBAA=?>BB>?@A=:?@9@BA@78?B- RG:Z:474747 +427_29_95_F3 4 * 0 0 * * 0 0 AGACGAAGTGGTGATGGGTGTAAACGGCCCGGCGTAGAGCACGCTCGAGC ?8?@>A><<:9??5????;;>@@9=<7?8<==>4@-==7;/5>1;4;;24 RG:Z:474747 427_29_521_F3 4 * 0 0 * * 0 0 CTCTGACGTCCCATGAACTTCGCGAAGTCACCCCGGCACAAAACGATTGC >B<@=AA===BB>?<>B:>>@;<6>=?>/;>B?<=3@0;?>><88=;<03 RG:Z:474747 427_29_911_F3 4 * 0 0 * * 0 0 GTCCGCCAGTCCAGACTGGACAATTCGGACAACGGGCTGAGGCTAGGGAC B?BA@BA@B@?AAB=?@ABB=@BBB@B>A<>@@BA<=?BA>?=@B<B<@= RG:Z:474747 -427_29_95_F3 4 * 0 0 * * 0 0 AGACGAAGTGGTGATGGGTGTAAACGGCCCGGCGTAGAGCACGCTCGAGC ?8?@>A><<:9??5????;;>@@9=<7?8<==>4@-==7;/5>1;4;;24 RG:Z:474747 427_29_970_F3 4 * 0 0 * * 0 0 GAGCTCGACGCGGGCGAACAAGTGAATGCCTCGAACAGACAGAGCGGCGA A@78BAB:>=BB9;>BA89BAA88AAB-:=@@4<<A@2:>>>.,9>B-78 RG:Z:474747 427_29_978_F3 4 * 0 0 * * 0 0 ACCCCAAATTTCCGCGCTTACAAACATCTGCGACAAAGATATGGTCCCGG A?@BAB@?B?AA?B?@B@BA>ABB?A?9A@??=7@AB/A?<A?<@@@=@? RG:Z:474747 -427_30_1018_F3 4 * 0 0 * * 0 0 CAGAAAGGCCCCTAAGGCACACACCCGCATGAGGCCAGGCTACCCCAAGC @@@AABB@B?A@;4AAA<;A?A>4AAA98BAA:9A@B=3B;A;:A>A=,B RG:Z:474747 -427_30_1044_F3 4 * 0 0 * * 0 0 CCCTTCGGAGGCGGACCAAGACAGCTAGGGAGGGAGAAAAAAGAAGAAAC ?BA@ABB=;AA><==AB>=@>A@=>=A?=A=A>9A7BABB@A3@A.<76+ RG:Z:474747 -427_30_1053_F3 4 * 0 0 * * 0 0 CGCCGTGCGCTTCTATCGTGGGACGCAAGTTCCGGATGATGACAATACGT <?A=@@ABB>BB@?@;;8A@>@??@>=A<A=9?@?9=9@<.:<BB:9<== RG:Z:474747 427_30_261_F3 4 * 0 0 * * 0 0 AAGAGCGGCGGCCAAGAGGCTGCTATTGAAGCCTTGCCCGTTCACCACCC A?>??A@@>?@@=@<@<??=A?>@>BA<>>>@7>?<??>>=<=<=>:;?@ RG:Z:474747 427_30_606_F3 4 * 0 0 * * 0 0 AGTAGGAACCTTACACACGGGAGGCAATCCCTGGCGTGAGGCTCGAGGGA >?@8=@@:<<@A86;A=88>@?8/-<??699A929>>667<9=59>881: RG:Z:474747 427_30_752_F3 4 * 0 0 * * 0 0 CGGCGGAGGCAGACGCACCATACTGCAACGGAGGAGGGCAAGATGGCGAT @B@=?B?@>=>A.<>>;8;9@@<>;AA:;;??8:3@>:;8<=6=6:0624 RG:Z:474747 @@ -103,101 +96,108 @@ 427_30_773_F3 4 * 0 0 * * 0 0 CGTTGCGCAAGAGAAACCGCAGCTACGGCACCGCCGTATACCTAATCCAA <@BBB=BBB@=?@B?=A@@==@@@@=B??===@>>;>A=7A@@8<8<>>? RG:Z:474747 427_30_959_F3 4 * 0 0 * * 0 0 AGGGAGACATAGCCTGCACTCCCAACCAATTTGCCACGAAATGGTCATAT >=@@?@=?;BA@>9BA=:=BAB=;:AA;9BB?88<==;??=?79;6677@ RG:Z:474747 427_30_983_F3 4 * 0 0 * * 0 0 CGTCTGACTAGGACTGAGAACCTCACCCTGGGCTCTCTAGAGAGGCTCCG >?@B?BA@A=BAB>@BAAB?B@AA=BB?@?B@A@9A:A<7B<B@>B<@@A RG:Z:474747 +427_30_1018_F3 4 * 0 0 * * 0 0 CAGAAAGGCCCCTAAGGCACACACCCGCATGAGGCCAGGCTACCCCAAGC @@@AABB@B?A@;4AAA<;A?A>4AAA98BAA:9A@B=3B;A;:A>A=,B RG:Z:474747 +427_30_1044_F3 4 * 0 0 * * 0 0 CCCTTCGGAGGCGGACCAAGACAGCTAGGGAGGGAGAAAAAAGAAGAAAC ?BA@ABB=;AA><==AB>=@>A@=>=A?=A=A>9A7BABB@A3@A.<76+ RG:Z:474747 +427_30_1053_F3 4 * 0 0 * * 0 0 CGCCGTGCGCTTCTATCGTGGGACGCAAGTTCCGGATGATGACAATACGT <?A=@@ABB>BB@?@;;8A@>@??@>=A<A=9?@?9=9@<.:<BB:9<== RG:Z:474747 427_31_153_F3 4 * 0 0 * * 0 0 GACAAGGAACTGCCAGGCCGGAGCGGAAGACGTACCATCATCAGCGCGGG ?>=>9AA?@;@A?;9@@:;;>>6<;?@9<<<A@8<><=8@A=>1?9>:9= RG:Z:474747 427_31_598_F3 4 * 0 0 * * 0 0 GGCAGGGTCTGGCTAGCATCGGTTAAGGATCTGGGGGAAGAGAATCTACG BBA?AB@?/-ABA=9A:1?9BA@@<8@>0<>?=<>@@=?::AA>@::99= RG:Z:474747 -427_71_906_F3 16 chrX_part 28077 25 49M * 0 0 CTTTGAAGCAATTGCGAATGGGAGTTCACTCATGATTTGGCTCTCTGTT []XNU]\]WO\]]]]]\]YX]]]]]]]]]]]]]]]W]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:14T34 +427_71_906_F3 16 chrX_part 28077 25 49M * 0 0 CTTTGAAGCAATTGCGAATGGGAGTTCACTCATGATTTGGCTCTCTGTT []XNU]\]WO\]]]]]\]YX]]]]]]]]]]]]]]]W]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:14T34 +427_292_217_F3 0 chrX_part 14846 37 49M * 0 0 GTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTTTCCTGACTT ]]]]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 427_794_484_F3 4 * 0 0 * * 0 0 GCTCATACGGACGAGACACCCGTTCCACGATTGAGGCCACCGGGGGGAAT A@BAABBBA=ABBA=@@B?4<BAA4>A@81@B@26>A@+<>=?<;?BB:2 RG:Z:474747 +427_1253_1057_F3 0 chrX_part 14947 37 49M * 0 0 TTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTTTTCATGTGTCT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]VZ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +427_1299_965_F3 16 chrX_part 13217 25 49M * 0 0 GGGATGCTCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAGTTCTG ][]]]]Y]]]]Z]]]]]]]]]Z]]]]Y]]]]]]]]Y]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:7C41 +427_1444_687_F3 16 chrX_part 25682 37 49M * 0 0 TCATTCTCAGCAAACTATCGCAAGGACAAAAAACCAAACACCGCATGTT ]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +427_1522_8_F3 0 chrX_part 12254 0 49M * 0 0 ACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCAC )]]]]]]]]]]]]]PU]]][]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:34C14 XA:Z:chrX_part,+26921,49M,3; +427_1891_897_F3 16 chrX_part 26846 23 49M * 0 0 GGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATC ]]]]]]]]]]]]]]]QW]]]Z]]]]]]]]]PX]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,-14740,49M,3; +427_1927_689_F3 0 chrX_part 26924 0 49M * 0 0 AGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATC ]]ZY]]]Z[]]]ZROQFMVZ]ZYUV]ZXSLTWZUT]]]]]]Z\[ZXW[T RG:Z:474747 XT:A:R CM:i:1 X0:i:3 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:34T14 XA:Z:chrX_part,+14818,49M,2;chrX_part,+12257,49M,2; +428_247_467_F3 4 * 0 0 * * 0 0 CTACCCCGCGCGAGACCCATCACACGACGTGCAATCCGCGAACCACACCG ABAABAAAB@AAAA?>>?AA:?@A:9=>A@4;?B@<>8B>.8?A>1:<@> RG:Z:474747 +428_385_1306_F3 0 chrX_part 27180 37 49M * 0 0 TTTCTTGTAAATTTGTTTAAGTTTCTTGTAGATTCTGGATATTAGCCCT ]]]]]]]]]]]]]]YW]]]][]]]MN]]]]]]]]]]]]]]]]]][]]\Z RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:23C25 +428_435_1382_F3 0 chrX_part 14761 0 49M * 0 0 ATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]]ZJ RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:35C13 XA:Z:chrX_part,+26867,49M,2; +428_589_1697_F3 4 * 0 0 * * 0 0 CGAGTCTAGAAGAACGAAACGCGCCCCAGGCCGAAGTCTAAGGGGGGCCA @1>B6<<;A?@?B></=B@@/>>B???5?:=<=?9:=12><:>>;:<577 RG:Z:474747 +428_615_1095_F3 16 chrX_part 28737 37 49M * 0 0 ATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTC ]]Y]]]WY]]]]]]MX]]]]]]]]S\]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +428_628_321_F3 0 chrX_part 28192 37 49M * 0 0 CTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACAATGGGGT ]]]]]]]]]]]]]]]]]]U]]Z[Y[]]]W\]QO\]\ZYPPVU]XY]\WU RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +428_666_413_F3 0 chrX_part 27425 37 49M * 0 0 CTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAACGTTTAAGTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]][]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:40A8 +428_912_273_F3 4 * 0 0 * * 0 0 TCCACCGCGAAACGGGCCCCGTCCAGAAAGAGAGCCCCGACTCCCCAGGG BAABBBB@@BABA@BB@>??BB@A?@A=@<>@??<ABBA::@A@@@@9>< RG:Z:474747 428_1011_1047_F3 4 * 0 0 * * 0 0 TCGCGCCGCCCTAAAGCCCAGAGTTAAGGGACCCTGAGGGGACGTCCAGC BB?>?BA@<>?B>=?A?>8@AB@A?A@>;=>>??@>A?==@?=6@>7;5> RG:Z:474747 -428_1380_646_F3 16 chrX_part 3496 37 49M * 0 0 ATAAAGAAGGTGGTTTTCAGGTCTATATTCAATGGCTCTGGTGTAATAG ]]]]]]VX][[]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +428_1380_646_F3 16 chrX_part 3496 37 49M * 0 0 ATAAAGAAGGTGGTTTTCAGGTCTATATTCAATGGCTCTGGTGTAATAG ]]]]]]VX][[]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 428_1424_131_F3 4 * 0 0 * * 0 0 CTCTATTAGCCCATTGTCAAGGCGACAGACACACAACAATCCGACACCAT 6B7?@BB>:>AB:@BBA>>8B8;:7><<>=9<6<+>8><<?@9>05<46= RG:Z:474747 -428_1495_1538_F3 0 chrX_part 26855 37 49M * 0 0 GGATCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:2G46 +428_1495_1538_F3 0 chrX_part 26855 37 49M * 0 0 GGATCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:2G46 428_1562_623_F3 4 * 0 0 * * 0 0 CATGTATTTGACGGATGGTCCAAGGACGATAACCAATAATCCAGGAAAAA ;@A@BABA?AA@A<B?@?==@BA=:?@?><?>?5:==A?4:>?32:=@?< RG:Z:474747 -428_1569_464_F3 0 chrX_part 26911 0 49M * 0 0 GAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCT &)]]]]]]\]]]]]]]]]]]]]]]LS]]YS]]]]Z]]]]X\]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 XM:i:3 XO:i:0 XG:i:0 MD:Z:47T1 XA:Z:chrX_part,+12244,49M,3; +428_1569_464_F3 0 chrX_part 26911 0 49M * 0 0 GAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCT &)]]]]]]\]]]]]]]]]]]]]]]LS]]YS]]]]Z]]]]X\]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:47T1 XA:Z:chrX_part,+12244,49M,3; 428_1573_204_F3 4 * 0 0 * * 0 0 ACAAGTCATGTGACGCAATCACTTAAGGTGCAGGTGGTGAAGCGGAGATG B=;=ABA9:AB@;=AA44>5?;==65=2;978?:;19?/@-1=<==3?:= RG:Z:474747 -428_1632_1017_F3 0 chrX_part 14942 37 49M * 0 0 TTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTTTTCATG ]]]]]]]]]]]]]]]]]]Z\]]]YU]]]]]]]]RS]]]]]W]]T[TT]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +428_1632_1017_F3 0 chrX_part 14942 23 49M * 0 0 TTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTTTTCATG ]]]]]]]]]]]]]]]]]]Z\]]]YU]]]]]]]]RS]]]]]W]]T[TT]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+27049,49M,2; 428_1643_455_F3 4 * 0 0 * * 0 0 TAGTCTAGGATTTCCCACACCACCGGCCAACCGGGGGTACAATGCTCGGC A>>A>AA?;BBBAA>B@@?=AA@@<9>>@@??>A?<=<B@=75<A>;:<@ RG:Z:474747 -428_1684_1168_F3 16 chrX_part 27017 37 49M * 0 0 CTAACTGGTGTGAGATGGTATCTCATTGTGGTTTTGATTTGCATTTCTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -428_1691_159_F3 16 chrX_part 14618 37 49M * 0 0 TTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGC ]TO]UY]]]]]]]]]]]]VT]]]]]]]]]]]]]]]]]]]]]]]]]]]+/ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 -428_1816_859_F3 0 chrX_part 14837 37 49M * 0 0 AGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +428_1684_1168_F3 16 chrX_part 27017 37 49M * 0 0 CTAACTGGTGTGAGATGGTATCTCATTGTGGTTTTGATTTGCATTTCTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +428_1691_159_F3 16 chrX_part 14618 37 49M * 0 0 TTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGC ]TO]UY]]]]]]]]]]]]VT]]]]]]]]]]]]]]]]]]]]]]]]]]]+/ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +428_1816_859_F3 0 chrX_part 14837 37 49M * 0 0 AGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 428_1829_1041_F3 4 * 0 0 * * 0 0 AATAGTGTCACATCGCGAAGGAGCCCGGATACAGAAAAACGTCGAATAAG ,??A@9AB>@5AA>A9A?=?:B=?:5A=;>8@;:89A>=92A96<4@>;9 RG:Z:474747 -428_1841_222_F3 16 chrX_part 26855 37 49M * 0 0 GGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATGGCCACACTG ]\Z]]YV]]]]]]]][S[]]]SQ]]]]]]]]\]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:39C9 -428_1971_118_F3 16 chrX_part 27350 25 49M * 0 0 TGGCTTTTGTTGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCC XX]]]]]]][Y]]\]]\]]WX]]]\]]]]\\]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:7G41 -428_1978_162_F3 16 chrX_part 28066 25 49M * 0 0 TATTTTATCCTCTTTGAAGCAATTGTGAATGGGAGTTCACTCATGATTT ]]]]]]]]SS]]]]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:8T40 -428_247_467_F3 4 * 0 0 * * 0 0 CTACCCCGCGCGAGACCCATCACACGACGTGCAATCCGCGAACCACACCG ABAABAAAB@AAAA?>>?AA:?@A:9=>A@4;?B@<>8B>.8?A>1:<@> RG:Z:474747 -428_385_1306_F3 0 chrX_part 27180 37 49M * 0 0 TTTCTTGTAAATTTGTTTAAGTTTCTTGTAGATTCTGGATATTAGCCCT ]]]]]]]]]]]]]]YW]]]][]]]MN]]]]]]]]]]]]]]]]]][]]\Z RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:23C25 -428_435_1382_F3 0 chrX_part 14761 0 49M * 0 0 ATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]]ZJ RG:Z:474747 XT:A:R CM:i:1 X0:i:2 XM:i:2 XO:i:0 XG:i:0 MD:Z:35C13 XA:Z:chrX_part,+26867,49M,2; -428_589_1697_F3 4 * 0 0 * * 0 0 CGAGTCTAGAAGAACGAAACGCGCCCCAGGCCGAAGTCTAAGGGGGGCCA @1>B6<<;A?@?B></=B@@/>>B???5?:=<=?9:=12><:>>;:<577 RG:Z:474747 -428_615_1095_F3 16 chrX_part 28737 37 49M * 0 0 ATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTC ]]Y]]]WY]]]]]]MX]]]]]]]]S\]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -428_628_321_F3 0 chrX_part 28192 37 49M * 0 0 CTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACAATGGGGT ]]]]]]]]]]]]]]]]]]U]]Z[Y[]]]W\]QO\]\ZYPPVU]XY]\WU RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -428_666_413_F3 0 chrX_part 27425 37 49M * 0 0 CTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAACGTTTAAGTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]][]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:40A8 -428_912_273_F3 4 * 0 0 * * 0 0 TCCACCGCGAAACGGGCCCCGTCCAGAAAGAGAGCCCCGACTCCCCAGGG BAABBBB@@BABA@BB@>??BB@A?@A=@<>@??<ABBA::@A@@@@9>< RG:Z:474747 -429_1074_1497_F3 0 chrX_part 26923 0 49M * 0 0 TAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACAT ]]]]]]]]]]]]VV]]]XZ]]]]]]]]]]]]]YZ]]]]]]]]\[]]][Y RG:Z:474747 XT:A:R CM:i:1 X0:i:2 XM:i:3 XO:i:0 XG:i:0 MD:Z:35T13 XA:Z:chrX_part,+12256,49M,3; -429_1244_262_F3 16 chrX_part 27844 37 49M * 0 0 TTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCAT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -429_1264_776_F3 16 chrX_part 27356 37 49M * 0 0 TGGTTGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCC %!X\[]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]* RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +428_1841_222_F3 16 chrX_part 26855 37 49M * 0 0 GGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATGGCCACACTG ]\Z]]YV]]]]]]]][S[]]]SQ]]]]]]]]\]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:39C9 +428_1971_118_F3 16 chrX_part 27350 25 49M * 0 0 TGGCTTTTGTTGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCC XX]]]]]]][Y]]\]]\]]WX]]]\]]]]\\]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:7G41 +428_1978_162_F3 16 chrX_part 28066 25 49M * 0 0 TATTTTATCCTCTTTGAAGCAATTGTGAATGGGAGTTCACTCATGATTT ]]]]]]]]SS]]]]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:8T40 +429_320_1424_F3 4 * 0 0 * * 0 0 ATTGAGCGGGCGAACTGCGAGCACTGATTGCGTGATAGAGGGTAAACAAT BB?9=>B<=><BA<??@=;=:=A5=?@A>==AA48?72:<>>=??@:33= RG:Z:474747 +429_498_1544_F3 0 chrX_part 12236 0 49M * 0 0 GACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:1T47 XA:Z:chrX_part,+26903,49M,2; +429_517_617_F3 0 chrX_part 27136 23 49M * 0 0 CTGTTCATGTCCTTTGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+27136,49M,3; +429_525_1146_F3 16 chrX_part 14836 37 49M * 0 0 CAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGT TTXVUPQYSVYW]]]TT]]]OT]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +429_566_873_F3 16 chrX_part 28192 37 49M * 0 0 CTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACAATGGGGT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +429_627_1289_F3 4 * 0 0 * * 0 0 TTAGCGCCTACTGAAACTGCAGTGTCACATCGCGAAGGAGCCCGGATACA BBBBBBA?BBBB<BBB@@A@B@?=A@>>@AA??>?>B>:=A>===??<<B RG:Z:474747 +429_641_991_F3 0 chrX_part 27721 37 49M * 0 0 ACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]][ RG:Z:474747 XT:A:U CM:i:2 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:35C0A12 +429_706_923_F3 0 chrX_part 14842 37 49M * 0 0 AAAAGTGTTCCTATTTCTCCACCTCCTCTCCAGCACCTGTTGTTTCCTG LY]]]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:22A26 +429_820_1223_F3 16 chrX_part 27415 25 49M * 0 0 ATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAA [VUZ]]]]]]]]]]TT]]]]]U]]RZ]]]]]]]]]Y]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:9T39 +429_880_338_F3 4 * 0 0 * * 0 0 GATGTGAACCCGGAATTCCAACGTCACTGCGGGGATTCGTTTAACCCAGG A@A?BBAA@@?B>A@@A=?B?A8?;=A=>@@A?>?@A8;AAA=A<?<;>= RG:Z:474747 +429_899_643_F3 4 * 0 0 * * 0 0 CACAAAATTCACAAATGACGGTACTCAATAGCGGAATATGACTGGACGAT ?AB@6>?AB<=@AA@>@<A>=B@=>3@?@><A@@=>>?A=>;B8=@@6<< RG:Z:474747 +429_1074_1497_F3 0 chrX_part 26923 0 49M * 0 0 TAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACAT ]]]]]]]]]]]]VV]]]XZ]]]]]]]]]]]]]YZ]]]]]]]]\[]]][Y RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:35T13 XA:Z:chrX_part,+12256,49M,3; +429_1244_262_F3 16 chrX_part 27844 23 49M * 0 0 TTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCAT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+15141,49M,2; +429_1264_776_F3 16 chrX_part 27356 37 49M * 0 0 TGGTTGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCC %!X\[]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]* RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 429_1285_1614_F3 4 * 0 0 * * 0 0 TGTAGTTGCTACCACAGCCTAACAACACACAGACAGCGGAACTGTTACCC A@BB?ABBBBBBBABBBB?AABBA@<BB?A@B>6@=@@;BA@@>@;?B?? RG:Z:474747 429_1292_826_F3 4 * 0 0 * * 0 0 CGGTGAGGCTCCCGTCAAAGGAATATCACTGCGGGCCGACCGATCACAGT >A@A?AA>?BBB>@@;:?3>A?@??7@@;A=?<<<>=;@??<?9?7<A2A RG:Z:474747 -429_1304_326_F3 0 chrX_part 12249 0 49M * 0 0 GTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTC ]]]]]]]]]]]]]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 XM:i:3 XO:i:0 XG:i:0 MD:Z:39C9 XA:Z:chrX_part,+26916,49M,3; -429_1398_1503_F3 0 chrX_part 27821 37 49M * 0 0 TCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCAT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y[]]]\]]]]X\]]\U]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -429_1427_1475_F3 16 chrX_part 27983 25 49M * 0 0 TATCCTCTTTTATTTCATTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAG ]]]TOYT\]]]]]]]]]]]]]X]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:16C32 -429_1568_890_F3 0 chrX_part 13190 25 49M * 0 0 ATTCCCTTTGAAAACTGGCACAAGACAGGGATACCCTCTCTCACCACTC ]]]]]]]]]]]QT]]]PT]]]R]]]]MS]]]]]]]]QT]]]\]]]]QU] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:32G16 -429_1819_792_F3 16 chrX_part 3467 37 49M * 0 0 GTACGAAGAAAACAAAGAGCTCGGTTACCATAAAGAAGGTGGTTTTCAG [UMBRWX]UW]]]]]]]]]]]]]TU]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -429_1854_1258_F3 16 chrX_part 27411 25 49M * 0 0 CTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGT ]]]][[]Z]]]]]]]]]]]]]]]]]Z]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:13T35 -429_1876_126_F3 16 chrX_part 27366 37 49M * 0 0 TGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCCTATGTCCTGA W]Z]]]]\]]]]]]]]]]]]]]]]]]]]]]]][]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -429_1899_322_F3 0 chrX_part 27853 37 49M * 0 0 TCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTAT ]]]]]]]]]]]]]]\]]][Z]]]]Z\]]]]]]\\VZ]]]]]]SW]]]Z\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:48C0 -429_1905_281_F3 16 chrX_part 26882 37 49M * 0 0 TCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTAC ]]]][X]]]]]]]]]]]]]YX]]]X]]]]]]]]]Y]]]]]]]]]]]]]\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:29G19 -429_1921_1124_F3 16 chrX_part 26708 0 49M * 0 0 TTAATCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTG ]]]]]]]]\Y]]]]]]]]]]\]]][]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:0 X0:i:2 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,-14602,49M,1; -429_1925_1090_F3 0 chrX_part 28003 25 49M * 0 0 AGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:45A3 -429_320_1424_F3 4 * 0 0 * * 0 0 ATTGAGCGGGCGAACTGCGAGCACTGATTGCGTGATAGAGGGTAAACAAT BB?9=>B<=><BA<??@=;=:=A5=?@A>==AA48?72:<>>=??@:33= RG:Z:474747 -429_498_1544_F3 0 chrX_part 12236 0 49M * 0 0 GACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 XM:i:2 XO:i:0 XG:i:0 MD:Z:1T47 XA:Z:chrX_part,+26903,49M,2; -429_517_617_F3 0 chrX_part 27136 37 49M * 0 0 CTGTTCATGTCCTTTGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -429_525_1146_F3 16 chrX_part 14836 37 49M * 0 0 CAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGT TTXVUPQYSVYW]]]TT]]]OT]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -429_566_873_F3 16 chrX_part 28192 37 49M * 0 0 CTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACAATGGGGT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -429_627_1289_F3 4 * 0 0 * * 0 0 TTAGCGCCTACTGAAACTGCAGTGTCACATCGCGAAGGAGCCCGGATACA BBBBBBA?BBBB<BBB@@A@B@?=A@>>@AA??>?>B>:=A>===??<<B RG:Z:474747 -429_641_991_F3 0 chrX_part 27721 37 49M * 0 0 ACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]][ RG:Z:474747 XT:A:U CM:i:2 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:35C0A12 -429_706_923_F3 0 chrX_part 14842 37 49M * 0 0 AAAAGTGTTCCTATTTCTCCACCTCCTCTCCAGCACCTGTTGTTTCCTG LY]]]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:22A26 -429_820_1223_F3 16 chrX_part 27415 25 49M * 0 0 ATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAA [VUZ]]]]]]]]]]TT]]]]]U]]RZ]]]]]]]]]Y]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:9T39 -429_880_338_F3 4 * 0 0 * * 0 0 GATGTGAACCCGGAATTCCAACGTCACTGCGGGGATTCGTTTAACCCAGG A@A?BBAA@@?B>A@@A=?B?A8?;=A=>@@A?>?@A8;AAA=A<?<;>= RG:Z:474747 -429_899_643_F3 4 * 0 0 * * 0 0 CACAAAATTCACAAATGACGGTACTCAATAGCGGAATATGACTGGACGAT ?AB@6>?AB<=@AA@>@<A>=B@=>3@?@><A@@=>>?A=>;B8=@@6<< RG:Z:474747 +429_1304_326_F3 0 chrX_part 12249 0 49M * 0 0 GTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTC ]]]]]]]]]]]]]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:39C9 XA:Z:chrX_part,+26916,49M,3; +429_1398_1503_F3 0 chrX_part 27821 23 49M * 0 0 TCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCAT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y[]]]\]]]]X\]]\U]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,-15164,49M,2; +429_1427_1475_F3 16 chrX_part 27983 25 49M * 0 0 TATCCTCTTTTATTTCATTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAG ]]]TOYT\]]]]]]]]]]]]]X]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:16C32 +429_1568_890_F3 0 chrX_part 13190 25 49M * 0 0 ATTCCCTTTGAAAACTGGCACAAGACAGGGATACCCTCTCTCACCACTC ]]]]]]]]]]]QT]]]PT]]]R]]]]MS]]]]]]]]QT]]]\]]]]QU] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:32G16 +429_1819_792_F3 16 chrX_part 3467 37 49M * 0 0 GTACGAAGAAAACAAAGAGCTCGGTTACCATAAAGAAGGTGGTTTTCAG [UMBRWX]UW]]]]]]]]]]]]]TU]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +429_1854_1258_F3 16 chrX_part 27411 25 49M * 0 0 CTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGT ]]]][[]Z]]]]]]]]]]]]]]]]]Z]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:13T35 +429_1876_126_F3 16 chrX_part 27366 37 49M * 0 0 TGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCCTATGTCCTGA W]Z]]]]\]]]]]]]]]]]]]]]]]]]]]]]][]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +429_1899_322_F3 0 chrX_part 27853 37 49M * 0 0 TCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTAT ]]]]]]]]]]]]]]\]]][Z]]]]Z\]]]]]]\\VZ]]]]]]SW]]]Z\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:48C0 +429_1905_281_F3 16 chrX_part 26882 37 49M * 0 0 TCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTAC ]]]][X]]]]]]]]]]]]]YX]]]X]]]]]]]]]Y]]]]]]]]]]]]]\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:29G19 +429_1921_1124_F3 16 chrX_part 26708 0 49M * 0 0 TTAATCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTG ]]]]]]]]\Y]]]]]]]]]]\]]][]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:0 X0:i:2 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,-14602,49M,1; +429_1925_1090_F3 0 chrX_part 28003 25 49M * 0 0 AGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:45A3 +430_78_1025_F3 0 chrX_part 14935 23 49M * 0 0 TTGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]]]]]]]]Z]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+27042,49M,3; +430_89_1672_F3 4 * 0 0 * * 0 0 GGCGGAGATGTTACCCCGCGCGAGACCCATCACACGACGTGCAATCCGCG B?B?9@B@>=A@B=>A>?A@B<@==?=?@;>7A?>53A;>32@BAB>6?; RG:Z:474747 +430_131_637_F3 4 * 0 0 * * 0 0 ACCAGAGTTAAGGGACCCTGATTGGACGTCCAGCCACCAAGAGCGCGAAA 8??<>>@@8B68>?9=A8?=BB<AAA>0@;@<<A<>A9B@>A8=:@=A?; RG:Z:474747 +430_179_99_F3 0 chrX_part 14832 37 49M * 0 0 CCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +430_392_28_F3 0 chrX_part 12248 0 49M * 0 0 GGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTT ]]]]]]]]]]]]]]]]]]]]]]]]][]]]]]]\]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:40C8 XA:Z:chrX_part,+26915,49M,2; +430_491_367_F3 0 chrX_part 27259 37 49M * 0 0 TCCCATTTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]ZX]]]UU][]]]]]ZHR] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +430_607_895_F3 0 chrX_part 26847 23 49M * 0 0 GGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCG *]]]]]]]]]]]]]]]]]\]]]]]]]]ZZ]]]]\]]]]]]]]]Z[]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+14741,49M,2; +430_688_525_F3 16 chrX_part 27375 37 45M1D4M * 0 0 TGTTTTAGACATGAAGTCCTTGCCCATGCCTATGTCCTGAATGGTATGT WW]]]]]Z]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]]]"!] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:45^A4 +430_691_1191_F3 0 chrX_part 26852 0 49M * 0 0 GCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:0 X0:i:2 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+14746,49M,1; +430_693_248_F3 0 chrX_part 14829 37 49M * 0 0 CCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCAC -]]]]]]]]]]]]]]]Z]]]]]]][]]]]]]]]]]]]]]]]]]]]]]]\ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +430_821_1672_F3 4 * 0 0 * * 0 0 ATCGGCTGGCGCCAAGAATGTATTTGACGGATGGTCCATCGACGGCAACC A@?AAAAAA@=?:BA>B@>ABA?@A?B>:=@?<<:@>B=74@B;=><@65 RG:Z:474747 +430_874_1668_F3 4 * 0 0 * * 0 0 GAGAATTAAGGAAGGGAGCTAGCGTACTAAGCATACGGACGAGACACCCG A@AA>A@AB=@BAA@A@>@?B@=@?B@:A@?>:>A>=69@=@8A@@:/9? RG:Z:474747 +430_900_444_F3 0 chrX_part 26504 37 49M * 0 0 GTGATGTTCCCCTTCCTGTGTCCATGTGTTCTCATTGTTCAATTCCCAC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:11T37 430_1055_244_F3 4 * 0 0 * * 0 0 CGATGTTACCCCGCGCGAGACCCATCACACGACGTGCAATCCGCGAACCA ?BBBBBBBBBBBBBABB@BB@=<AB<>>B>9?<AB;:>BB@@<B?>3A@@ RG:Z:474747 430_1080_625_F3 4 * 0 0 * * 0 0 AGAACTAGGCCTGACACTAGCCAGCCGGGCGTCACTGCAAGGAAACTGCC B=BBBBBBBB>BBBB@?BA@B?@AB>A@AA>A7A@B?+@7A>A?<B-=>@ RG:Z:474747 -430_1105_227_F3 16 chrX_part 27741 37 49M * 0 0 TTTGAAGTCAGGTAGCGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGG ]]]]]]]][\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:16A32 +430_1105_227_F3 16 chrX_part 27741 37 49M * 0 0 TTTGAAGTCAGGTAGCGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGG ]]]]]]]][\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:16A32 430_1195_1598_F3 4 * 0 0 * * 0 0 CCTTTTTCAACAAGAGTATTTAATGCTCTGCTGTTTAAGGCCCCTCTCCC @B@BBBBBBABBB@BBBBBBB@AA><6.=>@=5<BA4A5>@8A7B>48:7 RG:Z:474747 -430_1270_1392_F3 0 chrX_part 27268 37 49M * 0 0 GTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGC ]]]]]]]]]]]]]]]]]]]]]]XW]]]SU]]]]]]]]]]]]]QT]]]Q[ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -430_1280_786_F3 0 chrX_part 28246 37 49M * 0 0 AGATATACAATCATGTCATCTGCAAACAGGGACAATTTGACTTCATCTT ]]]]]]]]]]]]]]]]]]]]]]]SX]]]]]]]][]]]\RW]]]SZ]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:44C4 -430_1307_10_F3 0 chrX_part 26911 0 49M * 0 0 GAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCT !"]]]]]]]]]]]]]]]]]]]]]]]]]]ZR]]]]]]]]]X[]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 XM:i:3 XO:i:0 XG:i:0 MD:Z:47T1 XA:Z:chrX_part,+12244,49M,3; -430_131_637_F3 4 * 0 0 * * 0 0 ACCAGAGTTAAGGGACCCTGATTGGACGTCCAGCCACCAAGAGCGCGAAA 8??<>>@@8B68>?9=A8?=BB<AAA>0@;@<<A<>A9B@>A8=:@=A?; RG:Z:474747 -430_1403_722_F3 0 chrX_part 12260 0 49M * 0 0 TTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:3 XM:i:2 XO:i:0 XG:i:0 MD:Z:28C20 XA:Z:chrX_part,+14821,49M,2;chrX_part,+26927,49M,2; -430_1406_34_F3 0 chrX_part 26518 37 49M * 0 0 CCTGTGTCCACGTGTTCTCATTGTTCAATTCCCACCTATGAGTGAGAAC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:10T38 -430_1531_1322_F3 0 chrX_part 26775 25 49M * 0 0 CAATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATAATC ]WP]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:46G2 -430_1586_641_F3 0 chrX_part 28277 25 49M * 0 0 ACAATTTGACTTCCTCTTTTCCTAATTGAATGCCCTTTATTTCCTTCTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:31A17 -430_1684_261_F3 16 chrX_part 27257 25 49M * 0 0 TCTCCCATTCTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGC QS]TU]]]YXVX]XJQX]]]][]YS]]]]\]]]\]]]]\]]]]]]]]], RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:9T39 +430_1270_1392_F3 0 chrX_part 27268 37 49M * 0 0 GTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGC ]]]]]]]]]]]]]]]]]]]]]]XW]]]SU]]]]]]]]]]]]]QT]]]Q[ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +430_1280_786_F3 0 chrX_part 28246 23 49M * 0 0 AGATATACAATCATGTCATCTGCAAACAGGGACAATTTGACTTCATCTT ]]]]]]]]]]]]]]]]]]]]]]]SX]]]]]]]][]]]\RW]]]SZ]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:44C4 XA:Z:chrX_part,+28246,49M,3; +430_1307_10_F3 0 chrX_part 26911 0 49M * 0 0 GAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCT !"]]]]]]]]]]]]]]]]]]]]]]]]]]ZR]]]]]]]]]X[]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:47T1 XA:Z:chrX_part,+12244,49M,3; +430_1403_722_F3 0 chrX_part 12260 0 49M * 0 0 TTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:3 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:28C20 XA:Z:chrX_part,+14821,49M,2;chrX_part,+26927,49M,2; +430_1406_34_F3 0 chrX_part 26518 37 49M * 0 0 CCTGTGTCCACGTGTTCTCATTGTTCAATTCCCACCTATGAGTGAGAAC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:10T38 +430_1531_1322_F3 0 chrX_part 26775 25 49M * 0 0 CAATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATAATC ]WP]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:46G2 +430_1586_641_F3 0 chrX_part 28277 25 49M * 0 0 ACAATTTGACTTCCTCTTTTCCTAATTGAATGCCCTTTATTTCCTTCTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:31A17 +430_1684_261_F3 16 chrX_part 27257 25 49M * 0 0 TCTCCCATTCTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGC QS]TU]]]YXVX]XJQX]]]][]YS]]]]\]]]\]]]]\]]]]]]]]], RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:9T39 430_1726_1548_F3 4 * 0 0 * * 0 0 TTTTCGACGACGAAGCTGCAAAAAGACATAGGCCCGAGGAAGCGCTACAC ;BBB=9@BAA3AA@>4=A>?<A@@=8<?;@8@@>>2=>8A69>5>4<==< RG:Z:474747 -430_1779_172_F3 0 chrX_part 25672 37 49M * 0 0 CTGGAAACCATCATTCTCAGCAAACTATCGCAAGGACAAAAAACCAAAC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]][[]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -430_179_99_F3 0 chrX_part 14832 37 49M * 0 0 CCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -430_1871_988_F3 0 chrX_part 14560 37 49M * 0 0 AAGGCTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCC ]]]]]]]]]]]]]]]]]]]]]]]TO]]]]\]]][T]]]]]]]]]][]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:1T47 +430_1779_172_F3 0 chrX_part 25672 37 49M * 0 0 CTGGAAACCATCATTCTCAGCAAACTATCGCAAGGACAAAAAACCAAAC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]][[]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +430_1871_988_F3 0 chrX_part 14560 37 49M * 0 0 AAGGCTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCC ]]]]]]]]]]]]]]]]]]]]]]]TO]]]]\]]][T]]]]]]]]]][]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:1T47 430_1994_1381_F3 4 * 0 0 * * 0 0 GACTCGGTCTCAGATCCAGGAGACTAACCAACCTTGAGGGAAATTAAGAG @BBBABBAB==ABB@>A@A?A@B?A>B@=?@AAAA=AA@8;ABBBAA?@8 RG:Z:474747 -430_392_28_F3 0 chrX_part 12248 0 49M * 0 0 GGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTT ]]]]]]]]]]]]]]]]]]]]]]]]][]]]]]]\]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 XM:i:2 XO:i:0 XG:i:0 MD:Z:40C8 XA:Z:chrX_part,+26915,49M,2; -430_491_367_F3 0 chrX_part 27259 37 49M * 0 0 TCCCATTTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]ZX]]]UU][]]]]]ZHR] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -430_607_895_F3 0 chrX_part 26847 37 49M * 0 0 GGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCG *]]]]]]]]]]]]]]]]]\]]]]]]]]ZZ]]]]\]]]]]]]]]Z[]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -430_688_525_F3 16 chrX_part 27375 37 45M1D4M * 0 0 TGTTTTAGACATGAAGTCCTTGCCCATGCCTATGTCCTGAATGGTATGT WW]]]]]Z]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]]]"!] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:1 XO:i:1 XG:i:1 MD:Z:45^A4 -430_691_1191_F3 0 chrX_part 26852 0 49M * 0 0 GCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:0 X0:i:2 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+14746,49M,1; -430_693_248_F3 0 chrX_part 14829 37 49M * 0 0 CCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCAC -]]]]]]]]]]]]]]]Z]]]]]]][]]]]]]]]]]]]]]]]]]]]]]]\ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -430_78_1025_F3 0 chrX_part 14935 37 49M * 0 0 TTGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]]]]]]]]Z]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -430_821_1672_F3 4 * 0 0 * * 0 0 ATCGGCTGGCGCCAAGAATGTATTTGACGGATGGTCCATCGACGGCAACC A@?AAAAAA@=?:BA>B@>ABA?@A?B>:=@?<<:@>B=74@B;=><@65 RG:Z:474747 -430_874_1668_F3 4 * 0 0 * * 0 0 GAGAATTAAGGAAGGGAGCTAGCGTACTAAGCATACGGACGAGACACCCG A@AA>A@AB=@BAA@A@>@?B@=@?B@:A@?>:>A>=69@=@8A@@:/9? RG:Z:474747 -430_89_1672_F3 4 * 0 0 * * 0 0 GGCGGAGATGTTACCCCGCGCGAGACCCATCACACGACGTGCAATCCGCG B?B?9@B@>=A@B=>A>?A@B<@==?=?@;>7A?>53A;>32@BAB>6?; RG:Z:474747 -430_900_444_F3 0 chrX_part 26504 37 49M * 0 0 GTGATGTTCCCCTTCCTGTGTCCATGTGTTCTCATTGTTCAATTCCCAC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:11T37 -431_1029_654_F3 0 chrX_part 27939 37 49M * 0 0 GATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTATCC ]]]]]]]]]]]]]]]]]]]]VK]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:17G31 -431_274_859_F3 16 chrX_part 14611 37 49M * 0 0 TCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGA ]]]]XT]]]]]T\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -431_362_522_F3 4 * 0 0 * * 0 0 CAGCCATAACGCGAGAAAGAAAGAGTATACGATTCAAGAATTAAGAGAGG ?B@?>ABBAA>B?A?@A@A@BA=A<8@>A?2@A@>AA?A?@<@A::779> RG:Z:474747 -431_427_471_F3 0 chrX_part 28034 37 49M * 0 0 CCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]WT]]]TR]]]SU]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:14A34 -431_436_304_F3 0 chrX_part 26555 37 49M * 0 0 ATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTAC ]]]]]]]]]]]]]]]]]]]U]]]]V[]]]]]]]]X[]]]T]]]]]][]\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:11C37 431_44_655_F3 4 * 0 0 * * 0 0 GCTATTAGCCCATTGTCAAGGCGACAGACACACAACAATCCGACACCATC >-<=>@@4:=>@?A:>=9=::::=:5<:<66=7865<9;<59=13:+<;; RG:Z:474747 431_50_371_F3 4 * 0 0 * * 0 0 CGGCCCCGTCCAGAAAGAGAGCCCCGACTCCCCAGGGCTACCAGCATAGA =AA@@AAAABBBAB@=@9@A@A@A?>B<??AA>@;?@?@>B?6=B7@8A@ RG:Z:474747 -431_510_914_F3 16 chrX_part 1438 37 49M * 0 0 TCCTTCTATAGAGTCTAGTTTGTGACCATATTTCTCATTCCAGAGGAAA ]]Z]V[Z]]]]]]WY]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -431_524_1355_F3 16 chrX_part 28191 37 49M * 0 0 GCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACAATGGGG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -431_753_1184_F3 0 chrX_part 27127 37 49M * 0 0 GAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTG Z]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:23T25 -431_933_606_F3 16 chrX_part 27360 37 49M * 0 0 TGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCCTATG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -@PG ID:bwa PN:bwa VN:0.5.9-r16 -@RG ID:474747 DS:description DT:2011-03-14 LB:lib-child-1-A PI:400 PL:SOLID SM:child-1 -@SQ SN:chrX_part LN:37500 +431_274_859_F3 16 chrX_part 14611 23 49M * 0 0 TCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGA ]]]]XT]]]]]T\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,-26717,49M,2; +431_362_522_F3 4 * 0 0 * * 0 0 CAGCCATAACGCGAGAAAGAAAGAGTATACGATTCAAGAATTAAGAGAGG ?B@?>ABBAA>B?A?@A@A@BA=A<8@>A?2@A@>AA?A?@<@A::779> RG:Z:474747 +431_427_471_F3 0 chrX_part 28034 37 49M * 0 0 CCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]WT]]]TR]]]SU]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:14A34 +431_436_304_F3 0 chrX_part 26555 37 49M * 0 0 ATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTAC ]]]]]]]]]]]]]]]]]]]U]]]]V[]]]]]]]]X[]]]T]]]]]][]\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:11C37 +431_510_914_F3 16 chrX_part 1438 37 49M * 0 0 TCCTTCTATAGAGTCTAGTTTGTGACCATATTTCTCATTCCAGAGGAAA ]]Z]V[Z]]]]]]WY]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +431_524_1355_F3 16 chrX_part 28191 37 49M * 0 0 GCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACAATGGGG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +431_753_1184_F3 0 chrX_part 27127 37 49M * 0 0 GAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTG Z]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:23T25 +431_933_606_F3 16 chrX_part 27360 37 49M * 0 0 TGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCCTATG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +431_1029_654_F3 0 chrX_part 27939 37 49M * 0 0 GATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTATCC ]]]]]]]]]]]]]]]]]]]]VK]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:17G31 diff -r 3840c86e34b77bbd0d7c2da0c4ff3e5004dc0fe4 -r 869163ea42946aa5c394d79a3366898cf59beeeb test-data/bwa_wrapper_out7.sam --- a/test-data/bwa_wrapper_out7.sam +++ b/test-data/bwa_wrapper_out7.sam @@ -1,422 +1,422 @@ +@SQ SN:chrM LN:16660 +@PG ID:bwa PN:bwa VN:0.5.9-r16 +853_7_53 77 * 0 0 * * 0 0 NNAGNCCGANNGGNGNNGTANGGNTNNATTGCGNCNCNNNNGGGCNNNCG !!14!3.15!!47!4!!8+1!$9!(!!,..1)&!3!(!!!!1/9&!!!,3 +853_7_53 141 * 0 0 * * 0 0 NNCNNNCGNTNAGTNGGNGGNGNGNNGGNNGNNNGGGGNGGGNGNGNGGN !!0!!!10!)!)0)!,-!##!%!%!!##!!'!!!%+&)!%$/!)!$!/(! +853_7_78 77 * 0 0 * * 0 0 NNCTNGGGGNNGGNGNNGGGNGGNGNNGGGGCGNGNGNNNNGGGGNNNGG !!##!###$!!##!&!!#$&!$&!&!!%&)'#'!$!#!!!!&)*(!!!&* +853_7_78 141 * 0 0 * * 0 0 NNGNNNAGNGNGTGNGGNCCNGNGNNCGNNCNNNGGGGNGGGNGNTNGGN !!#!!!5,!$!5&+!#8!)#!5!%!!3%!!'!!!$$8+!&)%!)!(!*#! +853_7_88 77 * 0 0 * * 0 0 NNGTNGGGCNNCTNGNNATTNTANCNNACAGGANCNGNNNNGGGGNNNGG !!61!5551!!13!4!!.,)!/,!3!!.)/17+!&!5!!!!-'0.!!!,5 +853_7_88 141 * 0 0 * * 0 0 NNTNNNGGNGNATGNCTNGGNGNCNNGTNNANNNGCTANCTGNCNGNTAN !!1!!!42!5!,25!24!77!4!3!!81!!,!!!5147!)/6!,!,!1&! +853_7_132 77 * 0 0 * * 0 0 NNGGNGATGNNTGNGNNGGGNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG !!$(!,#&#!!&#!#!!#($!%$!#!!#&%#$(!#!#!!!!)(*+!!!,2 +853_7_132 141 * 0 0 * * 0 0 NNGNNNGCNGNGAANGCNTANCNCNNTANNANNNGCCGNGAGNGNANGGN !!&!!!5#!)!)&+!2&!',!&!'!!1)!!1!!!4()$!/&,!'!'!0$! +853_7_141 77 * 0 0 * * 0 0 NNGGNGCCGNNCANGNNGGCNAGNCNNGGACCGNANGNNNNAGGGNNNGG !!54!9518!!1&!5!!/31!)0!6!!)533/:!5!6!!!!)/<:!!!,7 +853_7_141 141 * 0 0 * * 0 0 NNGNNNCTNCNCCGNGGNAANANANNAGNNGNNNGGGGNGAANGNGNGGN !!,!!!),!5!3)+!//!),!3!9!!&/!!+!!!**#)!.)(!(!(!43! +853_7_146 77 * 0 0 * * 0 0 NNCGNCACCNNGCNGNNGCTNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG !!10!/240!!0)!2!!#&'!'5!(!!(.-*$3!*!4!!!!+#(.!!!.( +853_7_146 141 * 0 0 * * 0 0 NNCNNNCGNGNGCGNGANCCNGNCNNCGNNGNNNCTCCNGGTNCNTNGCN !!1!!!33!4!#15!7(!51!1!3!!.5!!5!!!/)/,!&-/!,!.!4,! +853_7_269 77 * 0 0 * * 0 0 NNCGNGGGGNNGGNGNNGGGNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG !!%&!('#%!!#*!#!!/##!&)!$!!'$',%,!%!2!!!!3,,*!!!,2 +853_7_269 141 * 0 0 * * 0 0 NNCNNNGCNGNGCGNAGNACNGNCNNGCNNTNNNGGCANCCTNGNTNTGN !!3!!!/.!+!*4,!42!)8!2!3!!62!!0!!!84;)!)7.!5!/!&%! +853_7_321 77 * 0 0 * * 0 0 NNGANGTGGNNGCNTNNGGGNCGNCNNCGAACGNTNANNNNGAAANNNGG !!+$!+21(!!*-!.!!)#1!8/!9!!6,3+%6!'!,!!!!2&6,!!!&2 +853_7_321 141 * 0 0 * * 0 0 NNCNNNACNGNGAGNCANCCNANGNNGGNNGNNNATTGNCCCNGNANGGN !!$!!!&'!.!*##!6$!#1!+!#!!.+!!)!!!36(#!*5'!#!4!+(! +853_7_386 77 * 0 0 * * 0 0 NNCGNGTAGNNGANGNNGTCNCGNANNGAAGTGNTNGNNNNAAAGNNNGG !!31!:7-%!!:,!-!!21,!77!)!!227:9:!2!;!!!!)',%!!!86 +853_7_386 141 * 0 0 * * 0 0 NNGNNNTCNGNGCCNCCNTCNGNANNTCNNANNNGATANTCGNCNANGGN !!;!!!86!=!;9=!%5!58!<!2!!62!!&!!!&3:&!//8!*!7!5*! +853_7_405 77 * 0 0 * * 0 0 NNGCNAGGCNNTCNGNNAAANGTNGNNAGAAGGNANGNNNNATCTNNNCG !!<8!8;==!!;>!:!!7:7!7;!8!!7:>48=!2!=!!!!536*!!!;: +853_7_405 141 * 0 0 * * 0 0 NNGNNNAANANAAGNTCNGTNANGNNTGNNTNNNCATGNCGANGNCNGGN !!=!!!;:!>!<8=!9<!:<!=!>!!;8!!;!!!;//1!&(&!/!'!*-! +853_7_411 77 * 0 0 * * 0 0 NNCANGAAANNTTNGNNAGGNAGNANNGAAGGGNGNANNNNAAAANNNAA !!,/!13;,!!&,!+!!2/%!*1!$!!%*)+#,!,!&!!!!'-'&!!!++ +853_7_411 141 * 0 0 * * 0 0 NNCNNNAANCNAAGNAGNCGNCNGNNGGNNGNNNCAGANTCGNGNANGCN !!$!!!-#!#!*#+!,&!2*!#!#!!%'!!)!!!'$)$!/-#!#!'!,+! +853_7_445 77 * 0 0 * * 0 0 NNTANTGCANNACNCNNCGANCCNTNNTACGGGNCNGNNNNTGGGNNNGG !!&'!*+'#!!'%!&!!,%#!)%!(!!'##$&'!#!$!!!!$$#,!!!#$ +853_7_445 141 * 0 0 * * 0 0 NNGNNNTTNANGTTNATNTCNANCNNCTNNGNNNAAGANGGGNGNGNGGN !!&!!!0%!#!,&'!,'!$$!&!,!!&)!!'!!!..*&!#,7!1!.!10! +853_7_469 77 * 0 0 * * 0 0 NNGGNACAGNNGANTNNGAANGCNANNAAGGAGNGNGNNNNAGATNNNAG !!##!*($&!!##!#!!%))!#1!%!!(,##$.!#!(!!!!##'#!!!&$ +853_7_469 141 * 0 0 * * 0 0 NNCNNNCANTNTCTNTTNTTNANTNNAGNNCNNNGTTTNGTANGNTNTGN !!#!!!%%!$!))+!$,!*%!.!(!!.#!!#!!!#&##!##&!#!#!##! +853_33_1583 77 * 0 0 * * 0 0 TATGTATTTCGGTACCGCACAGANCACTCCAACCCGATAGCGTCAAGTCC /&2%,)+,+:&#:;,5*)8/%19!,%*1/%;#<952%:27#%%&4.,#-1 +853_33_1583 141 * 0 0 * * 0 0 CCCGCGCTCCCGATAATATAATCACCGAAACACGAAGACCAACAGGCCCA ),+&#,)',$##2$),%2'+#$)2),#$(+#+##&*%(-%1%#(##$$2, +853_33_1649 117 chrM 7331 0 * = 7331 0 TCACCTAATCTGCATGCAGCTCTGTCNTCATGTAGGAGTTAGAACGAAGC %1.)#$$1%%$)#)$&);=1968:42!:8<:78;888<6688=<<9<:9< +853_33_1649 153 chrM 7331 37 49M = 7331 0 TCACAGTCAAAACAATAGGCCACCAATGATACTGAAGTTACGAGTATAC XNT[[[YTQXUVKHX[]ZMOZ]SV]X]\Y[\ZVRTZ]][Y]]VNQUWSU XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:37C11 +853_34_1182 77 * 0 0 * * 0 0 GTTAAGGGTGTTAGGGAACCCTANAAAGCCCGGGTTTCGTGGGGGCGGGC ;7;5*982;:/;,46::69<4<(!4295.6144&::<4*.-+%$#.#,(# +853_34_1182 141 * 0 0 * * 0 0 GGGAACATTATACGGCTTTCGCCCCCTAGACCGCACTGTGTTGGGCCGTT >>>:9<<>><;58987;::9718859:2;75'3%(720&14%6(,51-&& +853_34_1358 117 chrM 7792 0 * = 7792 0 CGCCTCGAATATTGCCCTCAGATCAANACTGTTGACCCTCGGGCCAGGCC 9/8<9;6:<8=,>=<<;=<<9:><>:!9;@=:>?<=>><=>>?<=;??<< +853_34_1358 153 chrM 7792 37 49M = 7792 0 CTCCCTAGTGATATGCCACAGTTGGATACATCAACATGATTTATTAATA MV]YU]YXXTZ]ZY\]]]][]]]]]]]]][[]]][WX][Z]]]]]][[] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_35_596 73 chrM 477 25 49M = 477 0 CGATAGCTAAGACCCAAACTGGAATTAGATACCCCACTATGCTTAGCCC !SSNPYYYUQPS\VSSRPPZ[Z!!NXX\VXLL]]XUMKXYRTRKLV\Y! XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:22G26 +853_35_596 133 chrM 477 0 * = 477 0 GGCTCCTATTTTATTACGTGTCCTTCTCAAACTGACAGCGCAATGCTAAG >978>8=9;>;:2>;;85=3;::=;::7:8:68)<5;859>?<>:<6<58 +853_35_669 77 * 0 0 * * 0 0 TTGTGCTGTCACGGCAAGGCGGGNGAGTTGGTGCGGCTACTCTCATCTGG #4(,,&5,'-2(&5'10&)&-&3!,)+.*9&););:,8)7&3<&,/1:)& +853_35_669 141 * 0 0 * * 0 0 TTCTTATAAAACCGCTTACCCCCTAGGTCCGAACATCTTGCAGGGTCTTG ,)&#<&38':&)-2/*4-'*+,5:0(3(+.+&,)9,&%1%*'(+.+-&&' +853_47_795 73 chrM 649 25 49M = 649 0 CCCCGATAAACCCCACCATCCCTTGCTAATTCAGCCTATATACCGCCAT ]]\]]]]]X]]YY]]KL]]]NO][X07]]VIRZ]Z"0]]]]RKR]KF\V XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 +853_47_795 133 chrM 649 0 * = 649 0 CGGAAGGAGCGAATACTGAACCAACACAGGTTAACTAGGAAGAAAGTGGA >?@;;?>=A@A9:>;:>=<;=>::88<;=8=<:95>08=5.(364,)1,) +853_47_831 77 * 0 0 * * 0 0 TGGATACACGTAACAGAGGACCGGGCAGACTACTCGGGGGCCGTCGGTGG .)/'0(,&#*#'#)#(#(#*(#'%%1.3#$-2%$&/#$(#'%'%(##%+, +853_47_831 141 * 0 0 * * 0 0 TAAAATCTCGGATGGTTGCCTTGAACAAAAAGACAGCCCCGTCAAGGGAA 5A,&5,))%(()&,13(.9<2++8,>99*(%184,=/&5+)6/)0.&)64 +853_56_1228 89 chrM 8643 37 49M = 8643 0 TAATGACCCACCAAACCCACGCCTACCACATAGTAAACCCCAGCCCATG Y[]MKVY]]]]QT]]]YY]]]]Y]PN]]]]X]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:22T26 +853_56_1228 181 chrM 8643 0 * = 8643 0 CCCTGCGCCGAGCCGTCCCCCCCCCGACTGAACTCAGCAGATACTCGCAG (-5&(2)5(/&-:%&4&9%&-.1266:=:?<<?>>;??<:==<:?=?>;@ +853_56_1324 77 * 0 0 * * 0 0 GGGCTTTAACGCGTCGGCACGAGGTAAGTGGAGTGGCGATGGCACGATTC 5,(,)5+)57+94*,*3-#*4,2&2$2'(,2)-)22/)$23/1*)24'%$ +853_56_1324 141 * 0 0 * * 0 0 ACCATGTATGGAAAAAAAGAGTAGAGGAGGGAAACAATGAAAAACGGACC /6+58//.61366638/)&988).5::15578427=88&0:>;59:(6;< +853_82_2023 89 chrM 1195 23 49M = 1195 0 AGATAGAAATTTTAACTTGGCGCTATAGAGAAAGTACCGTAAGGGAACG XX]]VQXWSNT]]]WV]\Y]]]]]]]]]]]]W\]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrM,-1196,1S48M,3; +853_82_2023 181 chrM 1195 0 * = 1195 0 CTAGCTCTGTACGCGGCTTATGCGTCTCTTAGGCTCCCTAATTCTAATAC 75:5956654=71?9858;96;9>;;:?8:<=8=45762<?57<<>79;9 +853_83_197 77 * 0 0 * * 0 0 GGCAGATGATATGGACTGAGTGGGGGGGGAGGGGGGGGGGGGGGGGGGGG 8;95;6:96698;6;89:3=%(-*$&(+$&#%.''+(.-%-/5.*.*4/5 +853_83_197 141 * 0 0 * * 0 0 CCGTCTCCCGCGCCGCAGAGACACTACTTCCTCGCCGCGGTGCGCCGGGC /9;58179583997;5591<26;797=55:995$)&$'#-$(&&'(*(%& +853_112_119 77 * 0 0 * * 0 0 CCTAGGATAATACGCGGACAGGGGAGCTCCGGGGGGAGGGGACGGGGCGG 7)&8327,(41&&),%1/)%+242(1,)')&15,)&05#$50,$$87&.$ +853_112_119 141 * 0 0 * * 0 0 TCCCGGGACAACGGAATTAACAACCCCCGGGTGGAATCGGGTGGGAGGCG ))&)994&,/1(+-+.-('(02)145,.&42,#&).,&(-0.%,',%:(0 +853_112_253 69 chrM 1041 0 * = 1041 0 GAACGCTTATGGGGTCCGCTAGCTAACGCCGCCTGGCCAATAACTATAGT ;9;97857&:;6;&983;4=83/,::2=,8;7(&<;/8+275(/9-1&(; +853_112_253 137 chrM 1041 37 49M = 1041 0 ATAACCAAAGTGTAGCTTAAACAAAGCATCCAGCTTACACCTAGAAGAT WTVVUWTQYWRMT][YTWNITY]ZSW]]]RU\Z\]]]YTWVSTWX\ZM> XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_148_1347 73 chrM 14085 37 49M = 14085 0 ACTCAAAATAAACACAATATATGTCATCATTATTCCCACGTGGAATCTA #$]]]]]]]]]]]]]Z[]]]][V\\[]U\[Z]KQ]YOQW]]QUYWWZTQ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_148_1347 133 chrM 14085 0 * = 14085 0 TAAGGCCCGTGCCGGTCCGTCCAATGATATTGGAGGAGTTCCGGAGCAAG A=;@>>?=@@A@?A@>@A@=9?9<A@;9>>>>>7;=8<=;8;?;18?62= +853_148_1509 77 * 0 0 * * 0 0 GCTGGGTGAAAAGGCCCCGGCTTCACAGAATGTAATTTCTAATAGTCTTT -'-:+&1.,)&&=(=)?7=<=4&,>:(;,&<))))8)+(,'&(4&,(,3) +853_148_1509 141 * 0 0 * * 0 0 TGAATGTAAATTAAACGGGAGGAAAAATCTCCCCACAATTGAGGCCTTCC ./<&1=35>,/3(6,,1<3*)7,53)69<&(A<8+(;91).8&+7(:&<7 +853_157_314 77 * 0 0 * * 0 0 CTCGCCTGGAATTTAGCCATGGCTATGTTCTAGGTGCTTTGTTAGTTGCG 79();(1<))&2(5+&8&+.9-'198,',))&&7&:*,4)(6&2&/:&77 +853_157_314 141 * 0 0 * * 0 0 GATAGCAAAAAAAGGGGCCGAGCGCAAAAGCCGACCTGAGCACAGACGAA 9;:5461242#)#*1####('$$$##'#%#'$$%###/$%($#'#$$#+# +853_157_582 117 chrM 893 0 * = 893 0 ATTTTGATATTGCCTAAGCCAGGAGGATTATGGGGTACCTGATGTTGTTG 2&==93398<:46<@<:?:==6>:<<<=?=>;;<;A;;:>;;><::??:= +853_157_582 153 chrM 893 23 49M = 893 0 GCTTAATTGAATCAGGCCATGAAGCGCGCACACACCGCCCGTCACCCTC O/3]Y[12]PSUUY\]XXYZ\VY]]]]]]]]]]]][]]]]]]]]]]]\\ XT:A:U CM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrM,-895,2S47M,3; +853_158_402 77 * 0 0 * * 0 0 GGTTGTTAAACCGTCCCGGGCGTTATCCACGTGTGATACCCGCGCATGTG 711&$(-)##.,&((&(4('83><-:94,'.;2&*:<0%&7,3#+02#(# +853_158_402 141 * 0 0 * * 0 0 TCACAGACCCGAGGAAGCTTCGTATATTTGCCACTAAGGGCGTCGGGGGA 5;&35,<55<8<6;<3646:618477::95<92=752071+2339-.#11 +853_158_569 69 chrM 6195 0 * = 6195 0 TTCGTAATTATATTTGTCGGGCATTATGAGTACGGAGGTTATTATATAGG 8>34:8.56,9/7<=-80.562,994:)3,<#%85(,#7&%,'#3#,#%& +853_158_569 137 chrM 6195 25 49M = 6195 0 ATCCATTGGCTTTCTAGGCTTCATCGTATGAGCTCACCACATGTTTACA $]\YYYQM\]\WX]\\MN][YQS[\WS\YV]]VV]]MFY\]XPSV]SGL XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:30G18 +853_216_501 77 * 0 0 * * 0 0 CCCTGGCCGGTCGGGTGCGTCACGCGCCTGGCGGAGCTCCTAGCCACGCC />61=+11:/5/+/(&/1'%#:3&;&93(';0$4&*9,&/+))2')65.& +853_216_501 141 * 0 0 * * 0 0 CTTTTAATGGGTCCCTCTCTTACAAGGCTCTGTTAATTTTTCCTTTCGAA 85<85,7=47;:627;<6<4<::445934*:5<2)$9&-$273#/#6-.* +853_216_648 117 chrM 1235 0 * = 1235 0 CGAGGCAGCCCATTGAGTTTGGTCCCCCTTAGTTACAGGATTTCCAGCCG +&'%(14'2,09:7(776;53=99/58>75;88784;/:8)884;7/;6/ +853_216_648 153 chrM 1235 37 49M = 1235 0 AAGGGAACGATGAAAGATGTATTAAAAGTACTAAACAGCAAAGCTTACC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]SU]]]YY]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:19C29 +853_218_1907 73 chrM 1146 37 49M = 1146 0 TACCCTTAGTCACTTAACTAAAACATTCACCAAACCATTAAAGTATAGG YQOTRVYOS[\Z[XX]\YOS]XW]]\Z[X\ZUZWZ\XVVZQPMKWTUJ> XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_218_1907 133 chrM 1146 0 * = 1146 0 GAATGGCTTGACAAAGGGAGAAACGCATATCCTGTGATGTTATTTAAGAG 5).5<9?642>9+;9<;;:28=4886909479&7,3;&#9+:,6'5,(&/ +853_219_184 77 * 0 0 * * 0 0 GCATTTGCGACCATTTTGGGGTTGGTGGGGTGGGTGGCCGGTGGGTTGGG /&3&,)/,$)/&)2&#%(:/+#,*&$+$$(&1)/&+1##'&'#-,)&'%- +853_219_184 141 * 0 0 * * 0 0 CAGTAGTTGCATGAGTCATGAGGTTGGGTTGTTGGCAGCTGTTGTCGGCT '*)%%,,##3,1+,,#'&)#+#/-),%(&+$)%#%$&(&/#&(#%#'$%$ +853_233_615 77 * 0 0 * * 0 0 TTATGGATTAAATTTTAGCTAATTTGGCCCCTATGGATAAGGAATCCCTA (7.1:154753447,222383647814041,3+,4.-/%+21((2)2'7) +853_233_615 141 * 0 0 * * 0 0 GCCTTAAATCGATATAGTCGCGGGCCCCAACCGGGCCGAGTACACTGGGC ;@),<%8)(&<(0)<&<)&53.*%/,5,6*/6;.)+>,%.,7,#,,*$%$ +853_233_834 69 chrM 8993 0 * = 8993 0 GGGAGTTCTAGTGGAGAGATTATTCGCCGCCAGCTGCGTTGAGAGATGAA =<<=;><:6:;<<3>=:=8>><<8;<=63;>99099&%,##&'2##%/$% +853_233_834 137 chrM 8993 37 49M = 8993 0 CCACCCACAGGTATCCACCCCTTAAACCCCCTAGAAGTCCCCTTACTCA ]]]]]]]]]]]]]]]]]]]]]]\\]]]]]]]]]OQ]]VY]]SOVQ\]YS XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_244_474 77 * 0 0 * * 0 0 GATTGAGAAGGCTGCAAACGGCGAACGACCGGGCGGCCTAAAACCACGGA )15$&/&*,&,,(&&0.,&,07:)/1/4&))96&)'/&''.(+&1'&)'' +853_244_474 141 * 0 0 * * 0 0 CGGACAGAACGAAAACTCCTAACAACAGAGCTGAGCAAACCAATCCAGCC *$(5.+###%$$2*+'#$('/(#*$$$$0%'$$3',$(*#&'4(%$#/$$ +853_244_781 117 chrM 652 0 * = 652 0 GCAGCCACGAATGTCAAAATCTGGACCACTATACGGTGTCATAAATTCTT &24)57:,,<=892<?=>;9>989@=;>;:?7><<>;=7=86>>;:9><8 +853_244_781 153 chrM 652 37 49M = 652 0 CGATAAACCCCACCATCCCTTGCTAATTCAGCCTATATACCGCCATCTT ZOE[\XROW[]ZQJW]I?T]]][]]]]Z]]][Y]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_255_146 77 * 0 0 * * 0 0 CCTATGTCCCCTGACGGCACGCCGGGTCACCGAGCCGGGCCGCGCCCGCC 5.)8&)'++7:',%'&&,(1)1/8'('%1)20#%,4-$.&$''(1(0(/7 +853_255_146 141 * 0 0 * * 0 0 GGGAAGAGCCAGGGAGGACTGGGGCTGGAGCAAAAGAGGCGAGGGGGGCG #$##$%###&##'#&##$###&#&$######$####%%$$/$'%$'#$$# +853_255_403 117 chrM 13900 0 * = 13900 0 ATCCTCAGCACATAAGTGCGTGATTACCGATTGTATCATCGCTCGGTTGT 130>7&9+9:-83?<09=>;85?>=78;<<=99;>)87;>;9;=>?<:8< +853_255_403 153 chrM 13900 37 49M = 13900 0 GTTGTATAACCAAAAACAACCAACATTCCTCCCAAATAAATTAAAAACA 7FFGW]]]RIS\]]YT\]SMKT\TW[\\]Z[]]]]]]][[]]YZY]]Y\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:41C7 +853_256_428 77 * 0 0 * * 0 0 TAATTCAAGCAGATAAAAGAGTGTGCGCCCACCCTCCAAGGAAATAGAAA 2=<66<=>6::3<,8;>:3<3825,:1:98897,057::24<986:+,:: +853_256_428 141 * 0 0 * * 0 0 ACGAAGCGGTGTACCTGGCCCTACGCGGAAAGGGGGAAACCTTCCCAAAT @?8<A:A969=<:71?;;<5==>81><1<&??:264@>>/=<-819><() +853_256_834 117 chrM 9813 0 * = 9813 0 GCCCTCTGGCAAACCTACGGTAAGTTTGCCATGGAATCTTTGGCGACATT ######$$##############$#&####$&$##&##########)#&%' +853_256_834 153 chrM 9813 37 49M = 9813 0 TGAACCCAAAAAGGGCTAGAATGAACTGAGTATGGTAATTAGTTTAAAC DL]TAFU]\TDH]]]WZ]\NU\VZVU\]]]Z]]Z\\Z]]]]WZ]]]WWX XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:14A34 +853_266_697 89 chrM 1002 37 49M = 1002 0 AAGTCGTAACAAGGTAAGTATACCGGAAGGTGTACTTGGATAACCAAAG ]]]SQVY]]\]Y[ZY][]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]# XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_266_697 181 chrM 1002 0 * = 1002 0 CAAGTCCACTTATATATGCGCATCGGGTTTTTGGTGGAAGGTTGTCATGT ::<;9796:::;9;;;<4>=2=;<;?=>?=;==?><6;:<:<>=@>;<=? +853_266_1092 77 * 0 0 * * 0 0 GAGCCGGAACGAGACAACCCGTTCTTAACATCCACCACGCGTGGGCGACG ;)2))/8%'10:712<67<3(39</68/5)6&')/170&49)6)//,)&& +853_266_1092 141 * 0 0 * * 0 0 GGCGCGGATTATTGTCTTAGCTTTGCTACCGTTATATGCGCTTGTCTTGT ,318925,37;9,999<52622989/:7220#3$247,',*1'##,1,#5 +853_279_1056 77 * 0 0 * * 0 0 TGTGCTCTTCCGTCATAAGAGAACCTTAAGCTATCACGGACACAGCGCCG :;76;:=;:<7::;<<<3<76;:<9=<5;87=3<=5@3<7388771:;5< +853_279_1056 141 * 0 0 * * 0 0 TGGAGGGTACGATTAGAAGAGGAGGCGGTACAAATAGACAATTCCTCACT =<;<<=;><:>;=<<=>=:<<>=;<;=;<==8<87<7@8=<9<9;:1:3: +853_279_1330 117 chrM 8561 0 * = 8561 0 CTTTTTCCTTCCCTTGCTTCGGTGAGCATGAGTTGCCTTCCGTTTTTTAT 7%,117%%154#2639#1#,5'+)23%($$1#$#1<$&>-<-'9)4).<+ +853_279_1330 153 chrM 8561 37 49M = 8561 0 AACTATCCTCGAATTCGCAGTAGCCATAATCCAAGCCTACGTATTCACT JI[VXUU]]][\]]]WW]]]]\]]]]]]]]V]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:24T24 +853_292_158 77 * 0 0 * * 0 0 AATGTGCGTTTAAATATTCGGTCTTGGATGCTGATCAGCTAAAACGTATG ;=;;9;>>89=><94<;>9:;:896;;<8;3<<177=:5<6=:73<:9'9 +853_292_158 141 * 0 0 * * 0 0 AACTTTTCTGGCATTTGAGCGCGTTTTGGAACTGACGAACAGATGCTCCT ===9<<;<=<<>:<:=<>::7=9<=:;9:>;;98=58>;>4=@;:,;=1= +853_292_700 117 chrM 2055 0 * = 2055 0 CCCCACCACACCAGCCCCCCAAGCTTATACCCCGTACTCTCCTCATTACC 5.&/,#/++%):4'*/66:/.<6:82<6715=74+&>;<8:;>;=9<;9= +853_292_700 153 chrM 2055 25 49M = 2055 0 CACTTGTTCTCTAAATAGGGACTTGTATGAATGGCCACACGAGGGTTTT U[XVKS\MRZS\]ZTXZX]WT[[]]]ZUUT]]]]WVZ]]]]]]\ZUU\& XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:9C39 +853_365_890 77 * 0 0 * * 0 0 TGTGGGGGGGGAAGGGCGTCCGGCTAACGTCTCGGCGGGTGCGGGGGGGG <:7:=<;;;<9==><<;9<>:;>>;:;7<;<68(-#6+1&5,(4'2'.*2 +853_365_890 141 * 0 0 * * 0 0 AGAAGTCCGGGCGTAGTGTATCCGAGGGGCAAAAACTCTAACAACGGACT =9?=>7:9;A=9==??:<8?<=9@6<:>>8<?=>:=6:=<?8;<398:8) +853_365_1447 117 chrM 5643 0 * = 5643 0 ACCATTGGATTAGGCAGCCGTGGGGCATACTCATACGGTCTGACAACCAT $###$#$#(##&$&#8$277:3079<60;993;8;5+97=7)9:;:(7<6 +853_365_1447 153 chrM 5643 20 49M = 5643 0 TCCCCGAATAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTA NJUSYMK[RT[XXTY\ZZOT]]]XX\Z[XY]]]]]]]]]]]]]]]\]][ XT:A:U CM:i:1 SM:i:20 AM:i:0 X0:i:1 X1:i:2 XM:i:2 XO:i:0 XG:i:0 MD:Z:0C48 XA:Z:chrM,-5642,1M1D48M,2;chrM,-5644,1S48M,3; +853_368_1718 73 chrM 1149 37 49M = 1149 0 CCTTAGTCACTTAACTAAAACATTCACCAAACCATTAAAGTATAGGAGA (]Z\]SR]]]\Z]]]]]]]]]]]]]]][]]]]]]]V]]]WW]]]SO[[X XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_368_1718 133 chrM 1149 0 * = 1149 0 CTCCCCTCTCAGCTTGATTCCAAACGCCGGGATCTAAGGGTAATGTTCCG ;;A>A>?A;@@<><9A;6:?A:=1><<A@6=5515A<>8397:@1<6<3: +853_369_74 77 * 0 0 * * 0 0 AGCCACGGATCAGAGGGGGAACGATGGTATAGGAAGGGATAAGTCGGGGA 7:9875:8:7<69;78.$2/9&)6%0-$5)96&879'$8,&(/))6*2&( +853_369_74 141 * 0 0 * * 0 0 GGGTTCAAGCATGGGAAGTGGACCACAGCTCCCGACGGTCCACACCATCA =9756::884:54:791:47358965758589965&:94,&969;(5143 +853_375_367 77 * 0 0 * * 0 0 CCGATTGTCTTTCTGAGCGCACCGAATCAAGGTATCTACTAGCATAGCAT '+);,18&&&''),2&))4,%/1&5.1+-'/,'-1()))&'*)'+)&/&) +853_375_367 141 * 0 0 * * 0 0 GTTTTTTGGCGCGAGGTTTGCGCAGAAGGGCAAATTCCGGCAGCGTCGCG 5&')&(9<1,=?>:+,)6)&7,&(05/)1,',(0'&),&(6/7,,5,,44 +853_375_856 69 chrM 883 0 * = 883 0 GTTTACTTGAGTACATCCTCAAGACTGTCTTATGCCGAGGCTGCCTTTGA 8<;;>??83=>;63:@:?9=@<=>8@:?5?>8=1?;98;9<>4&40&2(% +853_375_856 137 chrM 883 37 49M = 883 0 AGAATAGAGAGCTTAATTGAATCAGGCCATGAAGCGCGCACACACCGCC ]]]]]]]]]]]Z]]]]]]]]]]]]]]]]]ZTV]]]]]]]\[]]]][]UQ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_381_1334 89 chrM 556 37 49M = 556 0 ATTCGCCAGAGTACTACTAGCAACAGCCTAAAACTCAAAGGACTTGGCG WLNHN\]]]]]]]]]]]]]]OJ]]]]]]]]]]]]]]]]\]]Z]]]]]]' XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_381_1334 181 chrM 556 0 * = 556 0 CCCCATCATACCACATAACACCACCAAGGCTCAAGGTGTCTTAATACCCA *%-#&2+,%&#2'%#,&%&.%7;';=?>%=<?>68:?@,;=?>%)4@>=@ +853_381_1648 77 * 0 0 * * 0 0 TTGCAGACTAGTTTCCAGGTATATTTTTCAAAGCCTTATTTTCTTTTTTT 986+0<95:8;(>5<<)58?,4)8;<5&,9/),()35)-3&7(&832$&/ +853_381_1648 141 * 0 0 * * 0 0 AGAAACGATCACAAATAACCCAAGTCTCGCCAAGAGAGCTTGATCCGAGA 8:9:;<;::::;65&:178(:8:517:35$3385)958.$<578%7:7.) +853_383_962 89 chrM 865 25 49M = 865 0 GGATTTAGTAGTAAATTAAGAATAGAGAGCTTAATTGAATCAGGCCATG O\]SGKS[[MJ]]Z10[]WHG]]WQT]]]HI\\YBDWTW]XU\]]VY]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:8C40 +853_383_962 181 chrM 865 0 * = 865 0 GGCCAATTATTGCAATGGTATGTTGTGGGGCTGGGGAGGTTGAATCTCTG 5*;3<8)659?)@>?:(99>:7==<?5?;A=:<2>A<;:==<=:>;9??@ +853_383_1666 77 * 0 0 * * 0 0 AGCGTCTTACAGACCCAACTTGAAGCTTGCAGGAAGGGGCAAACCAAACA ,,('6:.6-&7,(=15&%&<&&1(/16',.(1&&8($$&&+&)76,5815 +853_383_1666 141 * 0 0 * * 0 0 AACCACTGAGTACGTAGGCGGTGCAACCGAACCCCGAGTATTACCTACTG 18$+&,#./,8#8('./99#4(58);.22,;,2,%6,%)(,.,*957)(' +853_389_1983 77 * 0 0 * * 0 0 TACCGTCTTTCGATTGACCGGTCGGTCGGGGGCCGGGTGTCCGGTTCCGG ,&9):88.&'&&/.&4&%4(6#$4531,)66,.2-51#'2/&'5845,8. +853_389_1983 141 * 0 0 * * 0 0 TGGAGCTACACCATCCCCTTAGGAGGGGGAAAACGTGGGGTGACGTGGCG 715;6741498/6459/6448/6573'569<98845/6:9$),4%.560( +853_390_660 69 chrM 1251 0 * = 1251 0 CTAAGGCAACGTATTGGTCGCCTTATGGTAATGGTACGTATAATTAGGCT >8A==;<<<>;;A98<;:<=>;9;=;;;;>;8<;;@5;:81=:894;:), +853_390_660 137 chrM 1251 37 4M1D45M = 1251 0 GTGCTTAAAAGTACTAAACAGCAAAGCTTACCCCTTTTACCTTTTGCAT ]]]!%\W]]Z]]]]]YW][ZY]]]]WU\]]]\]Y\]]\V]23]]]HFRS XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:1 XG:i:1 MD:Z:0A3^A45 +853_392_1916 77 * 0 0 * * 0 0 GCGCCGGGGTACAGTGCAAGCGCGAACGAGACGAATTTGGGGAGGGCACT :<=<<<>>;>9<28A;<:*;:=95889<.:8;>34;6)%+6;05&::1+1 +853_392_1916 141 * 0 0 * * 0 0 GATGCATATCCTGCAAAGCACCAAGGATGGAAATTTGCGCTAAATAAGCC @;@A?>A;?@A>@@<=9A>??=<;A@9>A?=:;?=>;?<<?;<962&6): +853_393_183 69 chrM 660 0 * = 660 0 TCAGGATGGCCGTAATAATGGTGGCGTACACGCGCAAATTCCTTATGCGG =>;<<=*;4-;+9':>$427:&972<)71=;*793<1<1:;:7/9=)7/; +853_393_183 137 chrM 660 37 49M = 660 0 CCCACCATCCCTTGCTAATTCAGCCTATATACCGCCATCTTCAGCAAAC ]ZZ]\[]]]]]]]YZ][[[]]Y]]]]]]]]][]XV]]SGT\ULSXY]Z[ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_397_1746 89 chrM 9541 25 49M = 9541 0 CGCTACTCGTACTCATCGCATTCTGATTACCACAACTAAACATCTATGC DF8=*%8:ORJJNQOMD>LLOWUYMGGIQFNYV]SKPU]]VJGMFFVPJ XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:26C22 +853_397_1746 181 chrM 9541 0 * = 9541 0 GTCGTATTCCTTCCTTGCAGATATGTCATACATCCCTGCAATCAGACGAG ,5,+2.4.7/><1:777)5;78/97?:0<582/9<880;8;98;:7987? +853_398_593 77 * 0 0 * * 0 0 AATTTAACGTATGCGGTTTTCTCTTCTCAATCCTCACACCGGTAAGAACA (=714-?,:<,91)717878<7/9396=51,<<=,)/;8=5,:/8;7813 +853_398_593 141 * 0 0 * * 0 0 GACCCGTGGGCTCCACTGGTCAACGCCGTCCTATATGGCGGACTAGTCCT (,1&31,+//,&1?0,)(>91),,7(/0(1(3=/1>/)&83:5336:3-3 +853_423_1430 73 chrM 8093 37 49M = 8093 0 CTCAATCCAACAATGGCTAGTCCAACTTACATCAAAACAAATAATAGCT W]]]]]]]]]]]]]]]]]][\]]]]]]]]\Z]]]YW]]TKTO>=D?KXK XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:6T42 +853_423_1430 133 chrM 8093 0 * = 8093 0 CGGAGAACCCACCCGAGAGACATAGGGGCGAGATTCACCTGCTTTTTAGG >>5:<8<A<=:<=@<=5?:/=:8;7:=9<<87:<897:7891.=%;8/7; +853_424_115 77 * 0 0 * * 0 0 CCCGATACAGACCATGCGAATCGAGACGGGCTGTCTCCAGTCCAACCCGG 6>8:8<;>7?;;<,7>>;;8:<=16;:789549$%&6)'040$('%0''2 +853_424_115 141 * 0 0 * * 0 0 TGTTGACTAGCCGCAAGCTCCCTGGACAGAGGCAGTCTAAGCGGTCCGTT ;<<8<<>=9<=?:8:?:?8:A>;3;<=<8;<9?69>99;:;;77;:9/,; +853_439_1980 77 * 0 0 * * 0 0 CAATCAGTTTATGCAAGCTAAATCCCCGAGACTGAGAACGAAACTCTCGG ,<='0/71(/:.;2<<9:5>7?2<8<=9987;51?*=>:(7;<,()&:6/ +853_439_1980 141 * 0 0 * * 0 0 TGGAGCGATTTAGACCGTATTTTAGTCTCCGCCGATAATAAGAGCAATCT 952;8:98452>4=9;:0=3)6/76-666=777+<4::&86.;'7;:+5' +853_440_379 117 chrM 8797 0 * = 8797 0 TCCGTCGCGTCTCACGCCTCAGGAGCACTTTGGGACGCCGCTATTTGTGT 6<=8:7:366/<70;+5:9;7:;:<:899=89<8;:79><3:<8:5<8=9 +853_440_379 153 chrM 8797 37 49M = 8797 0 CCTTACCATATATCAATGATGGCGAGACATCATCCGAGAAAGCACATTC OOR\KGMS]SU]]ZY]YOQJQ]]\]]]]]]]]]\]]]]]]]]]]W[][X XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:21A27 +853_443_704 89 chrM 8985 37 49M = 8985 0 GCTGCTGACCACCCACAGGTATCCACCCCTTAAACCCCCTAGAAGTCCC K[ZHA@@A!.]]\]][]]]]]]]]]]XW]]]YT\]]ZX]]]]]]]]XY] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_443_704 181 chrM 8985 0 * = 8985 0 TGTTCCTGTAGTATATCACTTTTTTGCCCAGGACGGTGAGACACATGAAG 7:/><:;,?:::>;>=;:>>><9@>;>8A;=?@A@=?=?<=>AA>>AA<@ +853_443_1353 77 * 0 0 * * 0 0 AGCCGAAACGATTGTCGTGTAAAGGCGTCCGCCGGGTCAGATCGAAACCG 921/5>7972<889;:;9:3?>5;/95<509=7.878/4/;:.28;9/3( +853_443_1353 141 * 0 0 * * 0 0 GACGGAGGAGGGTAGTGCGGGGGGCGGGCGTGGGGCTTGAGAACGGCTCA 95:19@9979:<4,82>02:3;5.46:65:5<95<7:;7;:>9*;:<:82 +853_458_262 77 * 0 0 * * 0 0 TTACCTGCCTCTCCCTCGCCACTTGGATCGCCGGCTGACTCTACATTACA <;:=7:;;<8<=8;=<</<9?<9::<<:;9;;84:91#2&%,-($&&%*% +853_458_262 141 * 0 0 * * 0 0 AAGTCATCTTTCCGGGGAACCCCCCGGACCTTCCTTCTCCCAACCAAAAA >>;>=;<4><=>5;=;>2=>:>1;<><'::8>(=:?5%<=9;29<<=-0< +853_458_615 69 chrM 5320 0 * = 5320 0 TTGCTGTTACTGAAGTCATACCCTAAAGCTTAGTATGCGCGTGTGTCAAG 97899::;:<<:;;;<::9;;77:;;/8:=<6;86;34;;8695;:+5:< +853_458_615 137 chrM 5320 37 49M = 5320 0 TCTTTAGATTTACAGTCTAATGCTTACTCAGCCATCTTACCTATGTTCA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\\]]Z]]]YY]]Y][V XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_489_665 77 * 0 0 * * 0 0 GAAGAACGAGGTTTAAGATAGCGAAACCGCGACACGGACGGTAGAGTGGC ?::=-->4%&22=8)3<1;7$//6#)=(:%%<2(*,4,;7'92832:$9) +853_489_665 141 * 0 0 * * 0 0 ACGAGGAGATTAAAAAAAATGGGGTTAGATTAGATAAGATGAGAGGAGAG =>?><@=A<@@<?>>=:=:=;24&&)00+&$(4:%%'(4-#+16#-'1.$ +853_489_1193 117 chrM 5045 0 * = 5045 0 CCGGGTATAATCCATAATGGCGTTTTCCACTCTGCAAATACAGTAAACAG 85@06;<>)=55>29<;?)=>:<:===>5=>=>,><=?2=?<>>>=>=<= +853_489_1193 153 chrM 5045 25 49M = 5045 0 GCATACTAAGGACTGCAAGACTCTATCTCACATCAATTGAACGCAAATC RMO]UZ]]]]]\\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:16G32 +853_557_600 77 * 0 0 * * 0 0 TTGCCCCAAGATCGATCTTGTCCCGAAAACGTAAAGGGCCCGGTGCGAGA &+&))(51(,1&&:'7:&)=.8),/5034&.&31&0.&-/$3'&)&1&1, +853_557_600 141 * 0 0 * * 0 0 ACACGCCGCAAGTCACAACGAGAAGGCTAGGGACAAAAGACGGAGCAAAG 7-0'%()1&'&/65'1'/+,.*&&*17165:+0#-+'.&+''$-,$-&'# +853_557_1176 117 chrM 12324 0 * = 12324 0 GTGGACGGTGACGGTAACCCCCAGCCTTCCCAGGAAGCATATAGTGGGGG ;,<<=95:3==7<9@?9;9><<?:=A5@>=?6;<@=8><>:9:>79>@;> +853_557_1176 153 chrM 12324 37 49M = 12324 0 GCTTCATCATAGCCATAGCCTGATTCCTATTCAACACCAACACATGAGA []]]]]]]]]]]][[]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:10G38 +853_558_962 89 chrM 2448 37 49M = 2448 0 ATGTTGGATCAAGACATCCTAATGGTGCAACCGCTATTAAGGGTTCGTT \UV]]]]TS]]]XZ]]XFN]]]\]]]]]]]]]]]]]]\]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_558_962 181 chrM 2448 0 * = 2448 0 CTCCCCCCTCGGGGCCCTAACCTGCCGACCTCGCCCTATCGTTTACTCCT .)(0908:,&#6986$979'%<6.*772<<;>@=?=>;<>?=>>>==>?> +853_558_1569 77 * 0 0 * * 0 0 GCTACACACCCCCGAGCGGCCGGTGTAGTCGACGTGCGGAACGGTCGTAA (?16:=57:=779:995@=9?<?:>3<??=?339@?@;<@3?:8>><53? +853_558_1569 141 * 0 0 * * 0 0 TGGGGGGAATGCGTAAAGGAGGACCATGCCTCTGAGAAACACGCGCGAGA &&(?(?(8><;;;;<=;<7<;;8<:9;<88=<:<=::?8,6658/:,181 +853_563_1263 73 chrM 8090 37 49M = 8090 0 AATCTCAATCCAACAATGGCTAGTCCAACTTACATCAAAACAAATAATA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\X\][VYZSFM\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:9T39 +853_563_1263 133 chrM 8090 0 * = 8090 0 CTCGTACTGCGTAATATACAACCCCACGTCCGTTTGGCTTAACAGGAGCT @A>=?A@><?=A<==@A==?>>=;==>:1<<:?=<=<;=:?=<&:3<3): +853_563_1776 77 * 0 0 * * 0 0 ACCTTGGACCCCTCCGGCAGCATCGGACAAGACCGCTGGGTGGTCTAGGG =A><?@A:AAA@<>AA9@==?96AA=69;<>8A3>;86&?:;6&<>7??< +853_563_1776 141 * 0 0 * * 0 0 GGTCCTGCGGGCGGTTCCCAATTTCATCTGCCCGAACATAATAGGTAACC @=?=A>A@A>A?>@>>A@>A>?>1@>>>5@?@@8>?@&8><>97(:9:5) +853_584_1986 77 * 0 0 * * 0 0 ATAGCTTAACCGAATGCTTTAATAAATTTGCTGTTCTGAGGGCGTTACAC ,:)155*-9#7,;,)'232.:1(4,7#$3#97$%$,''+$,2(##,#%#( +853_584_1986 141 * 0 0 * * 0 0 ATGCCACCGCCTTACTATCTTTTTTGCTGACATCACGCCGTCTCTTGGTG ,#$)*)(($3,))$&#,(&#*))&$##&#(%+&'+$,,$2$&(#&#+,#$ +853_585_542 65 chrM 1916 37 49M = 580 -1336 AAAAGGAACTCGGCAAACACAAACCCCGCCTGTTTACCAAAAACATCAC ]]]]][]]][]]]]]]]]]]]]]]]]]YS[]]]\]]\MS]]]\TW\YTO XT:A:U CM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_585_542 129 chrM 580 37 49M = 1916 1336 AGCCTAAAACTCAAAGGACTTGGCGGTGCTTTACATCCCTCTAGAGGAG #(]]]]]]]]]]]]]]]]]]]]]]]]Y]]]]]]]]]]VV]]]Z]]YR\] XT:A:U CM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_585_1153 77 * 0 0 * * 0 0 GCTCACGCCAGTACCCCAAAGGTCAAGCCTTTCAGATTCCGGCCTGGTTC 87?><89<==9>868=95:49<>7;:96<,:=;-1::::64;58/9;;)1 +853_585_1153 141 * 0 0 * * 0 0 AAGACCAACGTAAATTATCCATTCGTACGATGCCCTGGGCATTGCATTCC <>689<?9>59781>9956245:44?6,16=466;77615206+=12$#, +853_611_981 77 * 0 0 * * 0 0 GACCTGAGCAGCAGTCGCCTGGAGCAAGCCGGCCGATATAAATCGATGCT 85275/655287&4<7<5889<176837797:835.6&44427/'48$71 +853_611_981 141 * 0 0 * * 0 0 GCACGGCAAGCGGTACGGGATACGTGAGGCGCGGTAAGCAAACCCGATCC ;=9===@::A><;<6><=;:@8;;==8<?:<<==<<3=<&>55=9;38=; +853_611_1451 69 chrM 593 0 * = 593 0 TAATAGCAGCATTCAACTTTCCTGACCTTTACTACTACCGAACCTATGGG 28#'%)5/,)46%-#28,4,/;00,'6,/'-;4%(#9,###:++'.9*## +853_611_1451 137 chrM 593 25 49M = 593 0 AAGGACTTGGCGGTGCTTTACATCCCTCTAGAGGAGCCTGTTCCGTAAT !S]]][TGDQ]WKRZWVRPLPYX[ZWTENZWXEFUX]PFRY[UUVS\QD XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:44A4 +853_626_841 89 chrM 10675 25 49M = 10675 0 CCTCCCACTCTTAGTCGCACTAATCTCTATCCAAAACCTAACAGGCTCA R]]]XZ]]]]RLZ]]]]]]]\T]]]]]]]][]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:15T33 +853_626_841 181 chrM 10675 0 * = 10675 0 CCCACCCGCCGTTCTAGGACGGCCACATTTTTATTAAGTCAGCCGGGATC ,)4,(85:>=?6@6>=7<=<>;>=<;?=A=<>>AA>@>A<>@?@A@?@AA +853_626_1431 77 * 0 0 * * 0 0 TGGGTCAATGCCCTATATGACATTAGGTTCGCGGTCGGTAACGAACAGCA 11-/8<:967:;959<<:5:<21781187057585;;*6-5$%8,2&%9$ +853_626_1431 141 * 0 0 * * 0 0 ATGTAGGTCCCTGACGGCCCCACGGAGGAACCTTAGCTAGGCCAACAGAA >5<:5897:<;4==:;7>;9;<979>89?<7;;:<9:6<49;8644.1+$ +853_628_1041 77 * 0 0 * * 0 0 TGAGCAAGACCCGTAATCTACAACGACCAGCGGTTATGACAATGTATAGC 978:5,7295,/889'529//,,:55227($128:'9*83,4&29&,%57 +853_628_1041 141 * 0 0 * * 0 0 CTATCGCTGATTTCACAGGAATCGGTCTTATAAGTTTGACCCCTTTTTTT <9)9<7839<:>/<<;>3'A9<36=<9$#9<8((<=8'&;97'7>;#2(8 +853_628_1976 117 chrM 620 0 * = 620 0 CGGACCCAGCAGTGTGAATCTGGGTAATCGCGCTGAGTGACAGCTCGGAA -&-,&&$9/84359:0;=1<7:::8?>.<9<:<:8A869=?=<;9=:<@< +853_628_1976 153 chrM 620 37 49M = 620 0 CTAGAGGAGCCTGTTCCGTAATCGATAAACCCCGATAAACCCCACCATC ON]][RQ]][W\]]]RR]]]YZ]\\]Z]]]]Z]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:17A31 +853_630_585 77 * 0 0 * * 0 0 TAGTGTCTTGGTTCGTGTAGAAGTGCCTGGCTTAGCTAAATCGAATTGCT 15/,/(/))=&,)>,):(>:<=/,)/3>:,,49/(6)/;/',.11.+9'4 +853_630_585 141 * 0 0 * * 0 0 GGCTGGACTATGCCGATGCGCGGGCACGGAGGGATCCGGGACCGGGAGGA &#$%#)%&#%#$$&(.##$##)-$&%%##&&.#&#$&-$#&'+'#$,,$& +853_630_1363 69 chrM 2399 0 * = 2399 0 ATAACAAAAGATTGAGGCCCATATTAGGTATTACCGCAAAAGGTGAGACG A@A=AAAA>A?@><?>@AAA8=:A@:?>A89:@>?=<?=@8A;;=59@8A +853_630_1363 137 chrM 2399 37 49M = 2399 0 CGCAATCCTATTCCAGAGTCCATATCGACAATTAGGGTTTACGACCTCG ]]]]]]]]]]]]]]]]]]]]]]]]]\]]]*,[]]IEZ]]]V[]]/1\SH XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_648_1618 77 * 0 0 * * 0 0 GAAAAGGGGCAGAATTTCGAGGGGAGTTAGGGCACAATCCCGCTAGCAGC &?,//&6(=77)):,)7.)933<)4%=:-8,831885//@3@:154',&3 +853_648_1618 141 * 0 0 * * 0 0 TTGATCCTATGCGGACGATTCCCGCGCTTCTGCAGTTGAGTTTTTTAAAA 1/(,/3<)+7%'/,%'&1)'09';/5.)%,)1&*111&+&5&0$4%$581 +853_649_292 117 chrM 1156 0 * = 1156 0 GGAATTCCTGGAGAGGGGGGTTGGGGGGTTGAGAAAAAGGGGGGTTGGGT ::4572;408<;82=:;?::5;9=:<::98=<57:<;;>?;;=>:;;>9: +853_649_292 153 chrM 1156 37 49M = 1156 0 CACTTAACTAAAACATTCACCAAACCATTAAAGTATAGGAGATAGAAAT VV]XR]\]]Z]]]]]]]]]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_669_616 89 chrM 8554 37 49M = 8554 0 TTCTACTAACTATCCTCGAATTCGCAGTAGCCATAATCCAAGCCTACGT YKKZ][YXT[\]]XZZYSM]]TNZ]WUXZ]]Z[]]]\TY]]][Z]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:31T17 +853_669_616 181 chrM 8554 0 * = 8554 0 GCCGAACATGCATGCAGGTGGTCAACTGTTCCTGTAGTATATCACTTTTG 3;>8==8=;>:A?:>A<@9>A=?=@<9<?>>A?@@>@@A>@<@>>=><AA +853_669_1548 77 * 0 0 * * 0 0 TTAGCTAGACATTAAACCATCCCTCTCATCTCCGGTTAACCCCGCCAGTT =;=<<=<<;=61:977/7;:96::<8.7<8;39:;976;;63)9;1+2:1 +853_669_1548 141 * 0 0 * * 0 0 TCGGGGACCGCCGCGCTCTGGCAGAGAGCTCCAGGGCGGGTGCCGGCAGG 8<977;>:=:;=:9><:9<;795<65>2>;;99=9/<4<8113/78,((& +853_678_1204 77 * 0 0 * * 0 0 GCAACCCGTACAAGTACAAGTACAAGTACAAGAACAAGAACAAGTAAAAA )=1=89;35:6:=:6;9A<5361?>1/6/=<'/;,A=&,:&>=/(5&A7& +853_678_1204 141 * 0 0 * * 0 0 CTTAAGAGAAAACCTGCTAGCAAACAAAAATAGGGGGGGAACAGAACGAG 737,88957/39486691$92<:77<:1060:9),4&/)),)(').4+,' +853_678_1908 69 chrM 14105 0 * = 14105 0 TAATAGGTCGATAACGTTAGAGACGTAAGAGGAAAGTAACTGCCGTCATG 8@?:57<:::?;=><=:<?:@=?>9=@=97?;>=7<7?:66<:;:9;=83 +853_678_1908 137 chrM 14105 25 49M = 14105 0 ATGTCATCATTATTCCCACGTGGAATCTAACCACGACTAATGACATGAA ]]][]]URX]]]WV]]UO\]]]ZXTRYNQX]]WVPNTOVXWUSRDLWEN XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:37C11 +853_718_1061 73 chrM 1329 25 49M = 1329 0 AGAGAACTTAAGCTAAGCACCCCGAAACCAGACGAGCTACCTACGAACA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]\Z]]]]]\V\]]X\ZUSU]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:43T5 +853_718_1061 133 chrM 1329 0 * = 1329 0 TGTCGAATATGCATTAAATAAGACTTGGCCGACTTGAAAAGTGTTGGCTT >A><@?@>@=>>;=<>@===<?=;>@A<=9:>;>=6==8<89:5>8>>;< +853_719_183 77 * 0 0 * * 0 0 ATTTTAGTTTACCTTCTTGAGTTCTACCTTAAACTTTGACCTCCCACCCC )/31.$%5'/#)',4#)'+$&7%%,&)#&&#%($$$$$%###%$'.##)' +853_719_183 141 * 0 0 * * 0 0 TAGAGAGCACTCCAGGGGAAGGGCCCAGAATCAAATAACAACTAATAGAA 99387)&%.,./'%682&.53/$)*65-440/#%$1$##.&$##2#,%$, +853_775_1932 73 chrM 5645 37 49M = 5645 0 CCCGAATAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTACT ]QHY]Z[TDO]]]][[]]]][]]]]]]]]]]]]]]]YY]\]]ZOKZUW] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_775_1932 133 chrM 5645 0 * = 5645 0 GTTTACGCGTCCCATTTAGCTTCGCCTATTTTCCCGTGGAGTGTCACCCA ((>3,,(/7&(A,3:5('4&<<?3;/,;8=()7@=:(3556(9:>/1317 +853_776_924 77 * 0 0 * * 0 0 GGATTGTTACGTGCGCCCTATACTGGAACTGACCAGTCATTGACTGGAGA -212<+87/3582?/4731,<2(A:956/<3148*:7/28069392;:7/ +853_776_924 141 * 0 0 * * 0 0 GTGGGGTTAAATAGTAGAAGCGCGGACAGGTCCACGTGGAGCGCGAAGAA 88;9855?888?<.;=:54875'67+1#9661#474.5374&#1:2*%88 +853_815_1179 77 * 0 0 * * 0 0 ATTCAATGGACTAAATCCGGGACCGAGGCGCGTCTGGCAGTCGACAGCTA 67827:>5597:=:<6<,224348025,71:879724,2(7/29)92222 +853_815_1179 141 * 0 0 * * 0 0 GCGGACTAGAGACGTCAACTAGGAGTAGCCGAGTTCAAAAGGGCAAAGGA <'#37,/*;1;7,;45-738,(/3,+.%21:/&93('(+7#*(,8(*(&/ +853_816_193 69 chrM 2616 0 * = 2616 0 GTGGTCTGAGTCAACCTGTAGATGTTTCGTGCACGATAACCCAGGGATTC ><><<;<@;9;>;=::>:==8<::=8>7<<:</=<8=@<?878>?<6?<6 +853_816_193 137 chrM 2616 37 49M = 2616 0 AGAAGCGCCCTCAAACTAATAGATGACATAATCTAAATCTAACTAATTT ]]]]]\]]]]]]]]]]]]]]]\\\]]Y]]]]]VY][X]]Z[NL[WMQT[ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_827_2017 89 chrM 5150 37 49M = 5150 0 TTTTAGTTAACAGCTAAATACCCTAATCAACTGGCTTCAATCTACTTCT FCHRRSLJSMOW\\Y[]YZOIDI][\]]]]\Y[Z\]ZUUZ[Y\]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_827_2017 181 chrM 5150 0 * = 5150 0 ATTTCGAATCGCACGCGCACACAGTTCGAGGATCCTCTTAAACGTTAGCG ++6=<9;<8<7935;5480<::;<;::8;8;7994=<8?:=;8;>::8?< +853_828_1138 77 * 0 0 * * 0 0 TTAAAAGTCATGAGCGTACAACACGTGCCATCTGTCCTTAATACCTATCA &)&$&)&&&&)&&%&&&&)&'&&&%&%&&%%&#&&&&&&&&&&%$&&&#& +853_828_1138 141 * 0 0 * * 0 0 GCACTATCGTGTGGCCCGATGTCCGGTCCTCCTCTCGGTTTTGGACCTGT &+&&)')$#,&,#&&')&%&'/&$$'#####&##%$$###&&##&$$### +853_843_799 73 chrM 16042 37 49M = 16042 0 GAAGCTGGACTTAAATTGAACGTTATTACTCCGCATCAGCAACCATAAG ]]]]]]]]]]]][\]]]VT]]]YZ]]]QR]]]]W]]]UV]]]OL]]TQT XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:27C21 +853_843_799 133 chrM 16042 0 * = 16042 0 CTACACCTGCGTATCGCCTCGAAAATGCTGTCACCTTAAGCACGTTTAGG @>>=A:AA=A9A>@4:=>:8:2?:@23;>;;9=1<=;=933'58>;9>:6 +853_843_1357 73 chrM 13593 25 49M = 13593 0 TCCACGAGTAACCTCTAAAATTACCAAGACCCCAACAAGCAACGACCAA ]]]]]]]]]]]]]]]]]]]]]\]]]]]VU]]]XJQ]]\UYYXTOX]ZQN XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:45T3 XA:Z:chrM,+13593,49M,3; +853_843_1357 133 chrM 13593 0 * = 13593 0 GTTTGCTAGAGTCGTATGTAGTCGTCGTTTCACGTGACCGGTCTACACCC >:AA8=?:??:?@>@?><>8<;<:>31=>:8(=8<74=,9;?5;724>48 +853_844_231 77 * 0 0 * * 0 0 TTAATTCTAGGTTTAAATGGAATTAAGATCCTGAGCCGGCCAAACCCGGG &&8151/>,/,/8,(?<=&('(?/;8&8))<?11=39%718,$,./9*89 +853_844_231 141 * 0 0 * * 0 0 GGGGGACAGGTGGAACTGGTAGACGGTACAAGGGAGAGCGCAGGGGATCA 4289*5)*(/(/+;=$/806&&*76&,.19&4754&2/9/92>3;)11:, +853_844_634 77 * 0 0 * * 0 0 TCTATCCACCGAAGTCAGTGTCTGAAGTCTTAGACACGTTCGAAACCAAT 7#56860817:11777)66,9&>7%;188/87,9&5608#9.764682%0 +853_844_634 141 * 0 0 * * 0 0 TCGAAAGCTCAACATCATCCGGCAGGGCGTAAAACTGGTCGCCCATTGAA >A;887A=2@9>;.;<67,;?::2:<;9#?<97/7<944:;):&*>90,6 +853_877_1974 77 * 0 0 * * 0 0 TTGCCGTGAGGCGATTGTACCAAGATAAAAACAAAATAACCTAAAAACAA *,*-4'#)74,',)(*##,#&#+#%##&#$'##%##)(#$%##$#(##'# +853_877_1974 141 * 0 0 * * 0 0 GCGTCCGCAAGGCGCGGAGCCTGAGAAAATTAGCCCGCGAGAATGACTAT 76187559,719324834789;;285501;<<65:<<:9;;99=<830+: +853_878_1093 69 chrM 2417 0 * = 2417 0 GGTTGGAGCGGGATAGCAAATGAGGATCCTGTCACAATCTCCCACTCCGA @@/&3,(,,5533/161?@57/1,3>3<<8>53)65=1)735,1A<;:8@ +853_878_1093 137 chrM 2417 37 49M = 2417 0 TCCATATCGACAATTAGGGTTTACGACCTCGATGTTGGATCAAGACATC OZ]]]Z]]YWI8J]]TJX]]N;K]]RAN]N;3@XZH9=NYH>T]UE!/X XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_887_1933 89 chrM 11695 25 49M = 11695 0 CAAACACGGCTCTCTCAAACTTTTAAAGGATAGGAGCTATCCGTTGGTC W\]]UJN][WZ\]]]OR]]]]]]]]]]]]]W[]]]TQZ[]JCQV\]]Y] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:6T42 +853_887_1933 181 chrM 11695 0 * = 11695 0 GGCGCCAAGCCGTCCGACGACACTTGCGATGTGGGGACAGAGGGTGTGAA ))%,&))3#=4:=;<=:>8<:9=;?@<=<<>?A==;9<:><<<7@>>?4< +853_888_1016 77 * 0 0 * * 0 0 TACGGGGGAAGGGCATCCCGACGTTCAGGGCTCGGCACCACCCCAGAGGA &(,,//6)))'<&/9&')/,,)(,&,&&9&<)/'3,),/&&)7:)(/),/ +853_888_1016 141 * 0 0 * * 0 0 TGAAGACCGGGGGTCCTATGATCAACCCAACCATGAATTGTCACAGACCG &.+/)(-#'('&5#405$2220&,/03$0+)9$(#)4%%&&-,#&#),'# +853_943_830 77 * 0 0 * * 0 0 TATTTTTGGAGTACCCTCCTGTACCAATAAACGTGGCCCCGCCGGGTGCA 61)5/6,34'20)%@#)#<%#$<)6+33&6&')4&0'0*(#'215.$'9/ +853_943_830 141 * 0 0 * * 0 0 AACCTACTATGCTCATGCTGGAGAAGAAAAACACCGGTGCCATCAAACCA (>,5+''#1):,#>#10#%2:%$3&(4#.#..#*39(#':6,$'%))##4 +853_944_156 117 chrM 2054 0 * = 2054 0 TTCGATCAGGGTACGACTGTGGAATTTTGAGTACTGCGTCTGGGACATTG :<3><=.:><?19>99.;>;67:>==<=A=?;::>=8<??>>>A<<==;; +853_944_156 153 chrM 2054 25 49M = 2054 0 TCACTTGTTCTCTAAATAGGGACTTGTATGAATGGCCACACGAGGGTTT PV]]\XV[]]]X[]]]]]]]]XW]]]]]]]]]]]]]]]]]]]]]\]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:10C38 +853_946_129 89 chrM 7799 37 49M = 7799 0 GTGATATGCCACAGTTGGATACATCAACATGATTTATTAATATCGTCTC ORU\]]\\V[]]]]]SS]]]]]]]]]\]]]]]]]]]]]]]\Z]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_946_129 181 chrM 7799 0 * = 7799 0 ACGCCACGCAGCGTAACGGCAAGCGCGGGCTCAGCACGAGACCTTGCGCC '&($%,4().)8%.4::%$'492/(88.$0:<,&,=7/.,7,$',:;<:8 +853_946_1345 77 * 0 0 * * 0 0 GCGCCCGCCGTCGGGCTGAAGAGGTCGGCCCCGACCGCCGTCACCACCAG 8386936:688649:8;80:8#,#/,#1#-3#,#)4)2#42)&&12'2%/ +853_946_1345 141 * 0 0 * * 0 0 TGGACCCGAATCCAAGCAGCCTGCGAACAAGGTAGGCGCCTGGTTAGCCA ?A<:<<A:=<:@6<><@:=>1@=<==<4:>:=<:>985::685;:2689; +853_967_1892 77 * 0 0 * * 0 0 TATAATAGGTAAGTTCTGCTCGGAACATATTTTACCCCATTCTGCCTACC 8;64;9:878<=<9;:8>5:;9<>:;>769&;1://6&8;):1890:471 +853_967_1892 141 * 0 0 * * 0 0 TCGGGCAGATGGCGTCAATATCCTAATCCCGCGGAGCGGGCAGTACGGAT :>;<<<@==;<<<>;2-#8>87'9><*%=@271=A6//=;)7,;=1).:5 +853_968_485 77 * 0 0 * * 0 0 CCCGGTCGTCCGTTTGCGGTAAACGGCAACACAAAAACCCCAACCTTACC <=?;>==@<;>;<=><<?:<=?>=;?<>>=:><>=>7;>>7;8<::8:>< +853_968_485 141 * 0 0 * * 0 0 GAATGGAGGCGTGCATTTGAAAACGAGGCCAGGAAACTTCAGTACAGGAA =<:@<;:>@AA;>A9?8===<=>9<4;=7:2==9;94?@>.,;&;,=<&0 +853_968_835 117 chrM 7621 0 * = 7621 0 GTGTCCGCGCCGGAGCCGATTAAGGATATTTTCCCGTATCCATGACTTAT -986=;>48<==:<==<5<<9>::<=>>8<;>;?>><>=@:>:?<:<;A6 +853_968_835 153 chrM 7621 25 49M = 7621 0 TACTACGGCCAATGCTCAGAGATCTGCGGATCAAACCACAGCTTTATAC ZLCP"!ATX[NN]]]RR]]]Y[]]]\]]]]SS]]]YZ]Y]USVY]UU]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:8T40 +853_968_1657 117 chrM 1985 0 * = 1985 0 CATAACAACATTCGGTAAGGTTTGATTAAAGTCAGCTCGTTGTTGGAAAA &%%)&')##$*,#$#$(#####,&#*%&$+##36<6<<8;99<9<88::; +853_968_1657 153 chrM 1985 37 49M = 1985 0 GAGGCACTGCCTGCCCAGTGACATCTGTTTAAACGGCCGCGGTATCCTA \TZ]Z]ZTY[[[]]]]Z\]]]]]]]]]]ZY]]]\Z]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_985_616 89 chrM 231 37 49M = 231 0 CCCCACGGGACACAGCAGTGATAAAAATTAAGCTATGAACGAAAGCTCG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:45T3 +853_985_616 181 chrM 231 0 * = 231 0 GGTGGGTTGATATCGCGTCACTTAGGGTGGTAAGGTATGGTATCACAACA )$)($$#1&,&,#)#1&6=3;<=?;568=:;>@868@@@4>=@>>8A?@= +853_985_1608 77 * 0 0 * * 0 0 TGTAAGCTATTGATTATACGCCCAGATGGACAATCGACAGGAAGGGAGGG <:99:7<::<:>,<<;=:<97?5/:/;:2::::58<921;>:::<=19=< +853_985_1608 141 * 0 0 * * 0 0 CCTCGAGTAAGGAAGAGAGAAGGGTACGATTATAATCCTCCCAAAACGAG @798;<9::<9;<:=?9>8;=9:97?68?=;1<:58:3/97%2)%-)#&# +853_991_1890 73 chrM 3733 25 49M = 3733 0 ATGTCTGACAAAAGAGTTACTTTGATAGAGTAAAACATAGAGGCTCAAA ][]RO]]TDABJVW]UU]XURWUR]]]]]SO][IHW1(NUSD!!H\6$: XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 +853_991_1890 133 chrM 3733 0 * = 3733 0 AGGGGGGCAAGTTCAGGTTAATATATAAGTTTAGCCCAAAAATTACCTTC >,>)&,(->>.32(<@>1&=)/:/)>/&+((>,;)3;&1>=;,%63=7:9 +853_992_1006 73 chrM 5367 23 49M = 5367 0 CATCAACCGCTGACTATTTTCAACTAACCACAAAGACATCGGCACTCTG ]]YT]]W\\U]YOT]]]]]]ZV][]]RT]][Z]][]][\ZUSYTRXQPY XT:A:U CM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrM,+5367,49M,3; +853_992_1006 133 chrM 5367 0 * = 5367 0 CTGAATCAATGAGCCCACCACCACCCAAATGCTACCTACAGCAGACAGAG ###(#$#$0###1(###+,'##*##%#%##&##0####$&'#*%*'%#+# +853_992_1044 77 * 0 0 * * 0 0 TGCGTCGTGCGCTACTCCGTATTCCCCGGTAGGGGAACCTCGTAGGACGG &/5-<)&(':4+<3838&&4&7'1-17&,/11044//$&,%8,%$4,-%# +853_992_1044 141 * 0 0 * * 0 0 ACAGAGGCCCACCTGCTCACTCGGACAGCCGCCCACGATGAGCACTGCTC :70.7143#46<257:>/,488938=96958:/75;29)715689/8(&+ +853_993_143 77 * 0 0 * * 0 0 CGGAACGAGGGAGTATAAGCATAGTCCCGCATCAATAGACCTATGGATTT <788::9:8:77>3,6;<768:?:39<=:611>9751:;8:55895(>;3 +853_993_143 141 * 0 0 * * 0 0 CGGGGCTCCAAGCTCCCCATCGAGAGACTGGGGTCCGTACACCAGACTCG ;759<65;<>97<::==@/8;6;6<:;85==1::;;:97<,9=937:79: +853_996_488 77 * 0 0 * * 0 0 TGCCCCGTCCACAAAACTCTAGACACACGCCGACCTTGGCAAAAGAAGAA .&'6,#*<(%'8('(,8.4'.1*9)81-0(*0$&2+-)5,0/,1*21#%* +853_996_488 141 * 0 0 * * 0 0 GCGTACCTGAACTTGGCCATTAAGAGCAGAGCCACCAGTGTCGCGGGGGC &-'*/*/8)$2(,.22&10&,))0/+,$38'(531,)2)'((%'6'(-1. +853_996_1656 113 chrM 16037 25 49M = 1018 -15019 AAATTGAAGCTGGACTTAAATTGAACGTTATTACTCCGCATCAGCAACC YVP/1W[[\]YY\]\\]]]]ZT[]][[]]]]\]]]\Y[[ZWY\Y\]]]] XT:A:U CM:i:1 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:32C16 +853_996_1656 177 chrM 1018 37 49M = 16037 15019 AGTATACCGGAAGGTGTACTTGGATAACCAAAGTGTAGCTTAAACAAAG ]]]\]\]UQ]]][]]][]]]]]XW]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_997_740 77 * 0 0 * * 0 0 GGGGGGAGATCGGTCGTCCTCGCGATTCGACGTAGGGAAGGAAACCGAAC 9&5;'.1')&(4&2&(,'))=&,,-.&+,&)(.,7/2)(4/-'95,4,<3 +853_997_740 141 * 0 0 * * 0 0 GTTATCGGGGGTTTTCGCAACATAGCTTTGGTAAGCATTTCTGCACCCCT (=('(,(,+<=3?<;::97<;::9<;8:4;<;9::=38:;?=;1<99087 +853_1026_2018 77 * 0 0 * * 0 0 CGGTCTCCGTACGACGATACGCTTTACGGTATAAGCCAACTGGAGTGGGT 6<7=7;6,7=(6928:#;#.8#$'7###4(%/#$.'')0'3$(&)&(2** 853_1026_2018 141 * 0 0 * * 0 0 GGAGCTATTGCTCAGAGGCCATGTGGTGTCCGTTGGCGTTTGTGCTGGTG 9<#64>;#659;#%61;'11&<+7#9=-3(3:/3342&)361&&(34#%, -853_1026_2018 77 * 0 0 * * 0 0 CGGTCTCCGTACGACGATACGCTTTACGGTATAAGCCAACTGGAGTGGGT 6<7=7;6,7=(6928:#;#.8#$'7###4(%/#$.'')0'3$(&)&(2** -853_1027_1303 137 chrM 3893 37 49M = 3893 0 GGGCCCATACCCCGAAAATGTTGGATTACACCCTTCCCGTACTAATAAA ]]]]]]]]]]]]]]]]]]]TS][QV]]][Z\]YXTWWYYQXXYML[TK' XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 853_1027_1303 69 chrM 3893 0 * = 3893 0 GAATTATTCTTTTTCGGCTTACTATACACTTTACTAAAATCCTTAAATTA *,10,,;0##3##&#%&#&(%##&##$&#%####%%&$#&#####$##$$ +853_1027_1303 137 chrM 3893 37 49M = 3893 0 GGGCCCATACCCCGAAAATGTTGGATTACACCCTTCCCGTACTAATAAA ]]]]]]]]]]]]]]]]]]]TS][QV]]][Z\]YXTWWYYQXXYML[TK' XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1055_941 77 * 0 0 * * 0 0 TCGTTATGGAATTATCGATTCCGCTAAGCACTCGGACCCCAAACGTACCT AA@<@@AA=?@AA?@A@@@@?@A8>>@A><>77=>>=>=>>?=A:<1>8@ 853_1055_941 141 * 0 0 * * 0 0 TCTTGAGGTTGCGTAATTCACGGTGAAATAAGGAATAGTATCGTATCGAA 5&1)>3175@6//;@:3/)=5&$#&&&&&&&%&$'&&%&)&&$&&&&/&) -853_1055_941 77 * 0 0 * * 0 0 TCGTTATGGAATTATCGATTCCGCTAAGCACTCGGACCCCAAACGTACCT AA@<@@AA=?@AA?@A@@@@?@A8>>@A><>77=>>=>=>>?=A:<1>8@ 853_1056_37 117 chrM 1193 0 * = 1193 0 AAAGCAAAGTGGGGGGTAGAGAAAGGGGGGTTGGGGCACTAGTCGATAGC (&47&&,&,&-*):164,5511;9;6/5;:0':15&,;;24'06/<6:): -853_1056_37 153 chrM 1193 25 49M = 1193 0 GGAGATAGAAATTTTAACTTGGCGCTATAGAGAAAGTACCGTAAGGGAA !!(BOW05\WSGGRNOPLLNRX]]XY]]]]OP]XVVW]]]]]]]XU\]] XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 +853_1056_37 153 chrM 1193 25 49M = 1193 0 GGAGATAGAAATTTTAACTTGGCGCTATAGAGAAAGTACCGTAAGGGAA !!(BOW05\WSGGRNOPLLNRX]]XY]]]]OP]XVVW]]]]]]]XU\]] XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 +853_1075_559 77 * 0 0 * * 0 0 TCCACATGACCTCTACAACAGCCTAAAAGTATCAAGCGGCCCAGGTCAAA 86*0.#&1*,4#2'&/'%1)152+02'9#))&)%&*&'%+*0#'#&-.$0 853_1075_559 141 * 0 0 * * 0 0 TGAGCGCCACAGAGGGGAGTGAAACCTCGCTTCTGTATATTAGGGTAGGG #&5*&&(1&%&)2$,=(5+;9(0$2:&)%%$)1#:(#)2*,(',)#(,,# -853_1075_559 77 * 0 0 * * 0 0 TCCACATGACCTCTACAACAGCCTAAAAGTATCAAGCGGCCCAGGTCAAA 86*0.#&1*,4#2'&/'%1)152+02'9#))&)%&*&'%+*0#'#&-.$0 -853_1076_58 137 chrM 2475 37 49M = 2475 0 CAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAAAGTCTTACGTGAT ]]\\\]]IIUW]JJ\\]YYYZ]\\]][USZZZQOWX]YTRQ\OIPQWNE XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 853_1076_58 69 chrM 2475 0 * = 2475 0 ACAGGTCTAAGCCCGTAAAGTCGATCACGGACGGGTCGGCTTATATAGGC 78=89::;::8<:3<<;<9<8948;73:<<59::8:96:=(67881599, +853_1076_58 137 chrM 2475 37 49M = 2475 0 CAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAAAGTCTTACGTGAT ]]\\\]]IIUW]JJ\\]YYYZ]\\]][USZZZQOWX]YTRQ\OIPQWNE XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_1091_1124 77 * 0 0 * * 0 0 TTGCAGTCCTGTGCGGGGCGGCGGATTCGCTGCCTGTGCTGGGGGGTGGG 6;;;<===<@9?4:A<>9=>8;=<6=>/5578))2.&''(&%$$-+./$, 853_1091_1124 141 * 0 0 * * 0 0 GGAAAGTCAAAGGAGAGAATCGGCCCTGGAGGTGGCGTAAGGCGGTGTCC =?>@A??>@<<>9;9@>5;<A;??>A?:<>?;5:9;674;<518:5$=09 -853_1091_1124 77 * 0 0 * * 0 0 TTGCAGTCCTGTGCGGGGCGGCGGATTCGCTGCCTGTGCTGGGGGGTGGG 6;;;<===<@9?4:A<>9=>8;=<6=>/5578))2.&''(&%$$-+./$, 853_1092_230 117 chrM 197 0 * = 197 0 GATACTTCGTGCCTGGATTGTGCCTTTCTTTTCTTGGATCTTTTCGTCTC 0)/8'/785%+59539,67%1974*)/;5+:2=7(9-=2,//;3&3,>)1 -853_1092_230 153 chrM 197 37 49M = 197 0 ACAAAGTAGCTCATAACACCTTGCTCAGCCACACCCCCACGGGACACAG JX]YUTTOU]OO[]]]URUY[XY]Y[]][]]]]][[Z]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:1G47 -853_1094_1720 137 chrM 7802 37 49M = 7802 0 ATATGCCACAGTTGGATACATCAACATGATTTATTAATATCGTCTCAAT X[]]]]VRSYXRY\]]]]\]XPRTTYXUSRUVYILXOSSMOQSLTSNXU XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_1092_230 153 chrM 197 37 49M = 197 0 ACAAAGTAGCTCATAACACCTTGCTCAGCCACACCCCCACGGGACACAG JX]YUTTOU]OO[]]]URUY[XY]Y[]][]]]]][[Z]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:1G47 +853_1094_215 77 * 0 0 * * 0 0 GCGAACAGGGACGCAGCGGTGAACGATTTTCGCCTCCCTCACCGACCCCA 8;8.,:/*2./:*#3.2+2'(82&)$&266#4)(2/'*%1%$4'1*-:.3 +853_1094_215 141 * 0 0 * * 0 0 GCCTTTCTCCCTCTCCTCTGGTTTCGCCTTGGAACAAGCGAAGAACAGGC 4)&/-,1&$77/,.114('(1+)%'*0#,3$$#,#'&(#$$)#,$%3,#+ 853_1094_1720 69 chrM 7802 0 * = 7802 0 TCTAAGTAAGCCTAGCGTCCCTCTATGCTGTAGTGACCAGAGAGATTGTC 730,<8814/7479>7<7/1=;/:)=2;;,<<<;55=;7<==8/,:;&7' -853_1094_215 141 * 0 0 * * 0 0 GCCTTTCTCCCTCTCCTCTGGTTTCGCCTTGGAACAAGCGAAGAACAGGC 4)&/-,1&$77/,.114('(1+)%'*0#,3$$#,#'&(#$$)#,$%3,#+ -853_1094_215 77 * 0 0 * * 0 0 GCGAACAGGGACGCAGCGGTGAACGATTTTCGCCTCCCTCACCGACCCCA 8;8.,:/*2./:*#3.2+2'(82&)$&266#4)(2/'*%1%$4'1*-:.3 -853_112_119 141 * 0 0 * * 0 0 TCCCGGGACAACGGAATTAACAACCCCCGGGTGGAATCGGGTGGGAGGCG ))&)994&,/1(+-+.-('(02)145,.&42,#&).,&(-0.%,',%:(0 -853_112_119 77 * 0 0 * * 0 0 CCTAGGATAATACGCGGACAGGGGAGCTCCGGGGGGAGGGGACGGGGCGG 7)&8327,(41&&),%1/)%+242(1,)')&15,)&05#$50,$$87&.$ -853_112_253 137 chrM 1041 37 49M = 1041 0 ATAACCAAAGTGTAGCTTAAACAAAGCATCCAGCTTACACCTAGAAGAT WTVVUWTQYWRMT][YTWNITY]ZSW]]]RU\Z\]]]YTWVSTWX\ZM> XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_112_253 69 chrM 1041 0 * = 1041 0 GAACGCTTATGGGGTCCGCTAGCTAACGCCGCCTGGCCAATAACTATAGT ;9;97857&:;6;&983;4=83/,::2=,8;7(&<;/8+275(/9-1&(; +853_1094_1720 137 chrM 7802 37 49M = 7802 0 ATATGCCACAGTTGGATACATCAACATGATTTATTAATATCGTCTCAAT X[]]]]VRSYXRY\]]]]\]XPRTTYXUSRUVYILXOSSMOQSLTSNXU XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_1138_1582 89 chrM 7649 37 49M = 7649 0 GATCAAACCACAGCTTTATACCAATTGTTCTTGAACTAGTTCCACTGAA \]UPSS\RLW\]RPYY][Y]\]]ZY\\[Y]]]]]\]]]SS]ZVW]]][\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:28C20 853_1138_1582 181 chrM 7649 0 * = 7649 0 TCAGGAGCAATGGGTCATAGCGTTGGTGTTGTTGGAATCAGTGGGAACGC 86<8;?5:99>6<>/@=9=8==7=@=<7;<><:?=@?;>@<9<=?@@@=? -853_1138_1582 89 chrM 7649 37 49M = 7649 0 GATCAAACCACAGCTTTATACCAATTGTTCTTGAACTAGTTCCACTGAA \]UPSS\RLW\]RPYY][Y]\]]ZY\\[Y]]]]]\]]]SS]ZVW]]][\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:28C20 +853_1139_914 77 * 0 0 * * 0 0 CTATGAATCAATTTGAATAGTCGTCTTAAAATATGGCACCAAAAGCGATC <(),)&6:$&>'8)('$&5)$*'#+'1#.6,)#$1&('',&6&+',&&+/ 853_1139_914 141 * 0 0 * * 0 0 GAACTAAAGCCAACGCGGCAAACCTTGTGCAGCCACCGCAAAACCACACC )4#%&+2%$,/$##*000$&.2(,'',,#'&#%%)%%#+,'-&$,$*&)* -853_1139_914 77 * 0 0 * * 0 0 CTATGAATCAATTTGAATAGTCGTCTTAAAATATGGCACCAAAAGCGATC <(),)&6:$&>'8)('$&5)$*'#+'1#.6,)#$1&('',&6&+',&&+/ +853_1144_824 77 * 0 0 * * 0 0 GCTCGCTCTCAAAGGGGAGAGGGAAAGAGCTGCTGGGCTGGGGGACCGTT '(')%&,:4'.+4.:4(/028:9;:;01:;/6-(8344)/#++1),&9)& 853_1144_824 141 * 0 0 * * 0 0 ACCGCAACATGCTGAATATGACCTAGCAAACTACGAACAATCTGAACCAC '8'..1/#3)()&$%'/(&&#((('$1(.#+))',$)%(#(+),,,#$.) -853_1144_824 77 * 0 0 * * 0 0 GCTCGCTCTCAAAGGGGAGAGGGAAAGAGCTGCTGGGCTGGGGGACCGTT '(')%&,:4'.+4.:4(/028:9;:;01:;/6-(8344)/#++1),&9)& 853_1145_305 117 chrM 13509 0 * = 13509 0 GGCCAGATGTGGGCGAGCATTCCTGTCAGTACTCAAAGGTGTAAGACATC <=;>=883>6=>;=:8==;=?>;=<==<>><=>=:9;;<=?>><>:<=?= -853_1145_305 153 chrM 13509 25 49M = 13509 0 TAATTTCCACCCAAAAAGGCCAAATCAAATTATATTTCCTCTCATTCCT SY]#)]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:19A29 +853_1145_305 153 chrM 13509 25 49M = 13509 0 TAATTTCCACCCAAAAAGGCCAAATCAAATTATATTTCCTCTCATTCCT SY]#)]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:19A29 +853_1148_420 89 chrM 5650 37 49M = 5650 0 ATAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTACTTCTTC UVVVFA<JWQXSU\RPSWOJP09YPT]]XSZ]]]JO\]]XX]]]UUZ\# XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1148_420 181 chrM 5650 0 * = 5650 0 TGACCCTCGGGCCAGGCGACCTATATGTCCGTGCATGTCACCTAGCGCAG =<:5;<1:,:=8;==?9;><>><3@><;@>@==A@>?:?@?=<A@=@>>? +853_1148_1437 77 * 0 0 * * 0 0 TTTTCCAGGTGGCGTGTCCTTAGCAGGCACTGTGATGCTCCTTGTTTAGA 3875((77'%//28,(884:9/(;$59(03%%(5$'%+)$)&-.7513(4 853_1148_1437 141 * 0 0 * * 0 0 TAGCGGGGCGTAAGAAAGTAGAGTTGCTGGAAGATACGGGAAAAGAAGAG 59)&&;')&&4,1)&/;&(-)1&/(6/,0,1<<,:<5(748':;9==/7< -853_1148_1437 77 * 0 0 * * 0 0 TTTTCCAGGTGGCGTGTCCTTAGCAGGCACTGTGATGCTCCTTGTTTAGA 3875((77'%//28,(884:9/(;$59(03%%(5$'%+)$)&-.7513(4 -853_1148_420 181 chrM 5650 0 * = 5650 0 TGACCCTCGGGCCAGGCGACCTATATGTCCGTGCATGTCACCTAGCGCAG =<:5;<1:,:=8;==?9;><>><3@><;@>@==A@>?:?@?=<A@=@>>? -853_1148_420 89 chrM 5650 37 49M = 5650 0 ATAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTACTTCTTC UVVVFA<JWQXSU\RPSWOJP09YPT]]XSZ]]]JO\]]XX]]]UUZ\# XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 -853_1149_1929 137 chrM 8987 37 49M = 8987 0 TGCTGACCACCCACAGGTATCCACCCCTTAAACCCCCTAGAAGTCCCCT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]VY]]Z]]]ZOTJJYTNV]]TO XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1149_239 77 * 0 0 * * 0 0 CTGACCGCTATAGCGTGCGGAACAGGGGGGCCCTCTTCAAGCGGGGAGGG 3<51,*1*)88&%:1%+)%8'$//0.15*4';195/&//'9;(&38)7&- +853_1149_239 141 * 0 0 * * 0 0 TCCACTCGGCATCTCTTGCGACCGCTTGAGGGGTCTAGAAAAGCCCTGGG $$+,#2#',+*%0'',#$*4(8#'0$5&#+0/4+*0+5%&(2)#&3/('+ 853_1149_1929 69 chrM 8987 0 * = 8987 0 CTAGTACCACCATTGTAGTAACGAGGGCCGTATTTAGGAGGGGCGCAAGG ><:<=98>;;>=<>><@@==>=A=<<;><;>:><>9<?<:><<<;>;<>< -853_1149_239 141 * 0 0 * * 0 0 TCCACTCGGCATCTCTTGCGACCGCTTGAGGGGTCTAGAAAAGCCCTGGG $$+,#2#',+*%0'',#$*4(8#'0$5&#+0/4+*0+5%&(2)#&3/('+ -853_1149_239 77 * 0 0 * * 0 0 CTGACCGCTATAGCGTGCGGAACAGGGGGGCCCTCTTCAAGCGGGGAGGG 3<51,*1*)88&%:1%+)%8'$//0.15*4';195/&//'9;(&38)7&- +853_1149_1929 137 chrM 8987 37 49M = 8987 0 TGCTGACCACCCACAGGTATCCACCCCTTAAACCCCCTAGAAGTCCCCT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]VY]]Z]]]ZOTJJYTNV]]TO XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1231_1371 77 * 0 0 * * 0 0 ATATCTCCTTCCATTTCTGCCTGCGCCTATGTCCTTTTAGGGGTGTTTGC ,/0,.#'#$954),&#-',;.*##*(*.'82#$#2*$*#(%%&###,'#+ 853_1231_1371 141 * 0 0 * * 0 0 CGCAACGTTCGTTACCCCTGTGTTTATACCTGATTTGAATTTAATCGAGG #:2+%%-,#,-/''''#&**+.#%&,*)#*#1$$&+%$%'%&3$'/$'(/ -853_1231_1371 77 * 0 0 * * 0 0 ATATCTCCTTCCATTTCTGCCTGCGCCTATGTCCTTTTAGGGGTGTTTGC ,/0,.#'#$954),&#-',;.*##*(*.'82#$#2*$*#(%%&###,'#+ +853_1231_1635 89 chrM 3568 37 49M = 3568 0 AACATGTTCCTTCCTATGAATCCGAGCATCCTACCCACGATTCCGATAT YWRUYRTQEFQZ\WY][SUZZYX[]]TQ\WY]VV[]]ZW[]\OR]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 853_1231_1635 181 chrM 3568 0 * = 3568 0 CGCATGTCAATCTGGTCCTTCATGCAAAATCTTGACTGAATTAATAAAAG 37):115'<654068;15:98:,67:74<9967;=<65@9:9;?;<;=>< -853_1231_1635 89 chrM 3568 37 49M = 3568 0 AACATGTTCCTTCCTATGAATCCGAGCATCCTACCCACGATTCCGATAT YWRUYRTQEFQZ\WY][SUZZYX[]]TQ\WY]VV[]]ZW[]\OR]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 853_1232_516 117 chrM 1292 0 * = 1292 0 GTTGGGGGGTTGAGGAAGAGGGGGGTTGGGGGGTTGAGAAAAAGGGGGGG 4),%/-61&)0/'&&&4&&&,4/&-*5)&)/5.&&)+(&'*(,&'))685 -853_1232_516 153 chrM 1292 37 49M = 1292 0 CTTTTGCATAATGATTTAACTAGAATAAACTTAGCAAAGAGAACTTAAG !8[04XW]]ZZX]][XV]ZW]]]]]]\]]Z]]]]]]Y]]]\V[]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1232_516 153 chrM 1292 37 49M = 1292 0 CTTTTGCATAATGATTTAACTAGAATAAACTTAGCAAAGAGAACTTAAG !8[04XW]]ZZX]][XV]ZW]]]]]]\]]Z]]]]]]Y]]]\V[]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1232_940 77 * 0 0 * * 0 0 TAGGGCTAAGTGTCGTGGCTGGCCCCCAGCCAAAACTTTCGCTTCTACCC >175()<>>1&','95'/A&3,/?315@,&/',,,&&5,3/&1)&1'1<' 853_1232_940 141 * 0 0 * * 0 0 GTTTTCCTGTGCCCGAACTCTTGGGGATTATTCGCCCCGAACGGTTCGTA //&)3=65://7&/,1@15,)),33=1,<),,3(3?))//,),)6,39)' -853_1232_940 77 * 0 0 * * 0 0 TAGGGCTAAGTGTCGTGGCTGGCCCCCAGCCAAAACTTTCGCTTCTACCC >175()<>>1&','95'/A&3,/?315@,&/',,,&&5,3/&1)&1'1<' +853_1236_169 73 chrM 3979 25 49M = 3979 0 CTAGGAACTATAATCGTTATAATAAGCTCACACTGACTAATAATCTGAA ]]]JJRQNV]]WUOOYKR][$"!!SSXWIKTXXW[TNRGL]95KADHGM XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 853_1236_169 133 chrM 3979 0 * = 3979 0 GCCTCCAGCTTATATACTCGAGGAGGGATATATTGAACATAGGCTGGTTG 8>9<:6<,.&99864<;>2);=52,:<59/<67<*;<:&+9:6&2<<<:) -853_1236_169 73 chrM 3979 25 49M = 3979 0 CTAGGAACTATAATCGTTATAATAAGCTCACACTGACTAATAATCTGAA ]]]JJRQNV]]WUOOYKR][$"!!SSXWIKTXXW[TNRGL]95KADHGM XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 +853_1237_10 77 * 0 0 * * 0 0 AACAGATAATACGGCCTGCTTTGAGGGCTAACTAAAATGGGTCAGCAAAC (,,;/)&5/()&=)3(&;<:3)=3=)/=&=-.8,9;<=5;,&141<,;/< 853_1237_10 141 * 0 0 * * 0 0 TAGCATGCAGACGAGACGCTCCATTTACGGTCGAGAAGTTTAGGTAAGTT 6/<779>86=-4886:>:37==:1;729=2</===6:;,6/;66)((&14 -853_1237_10 77 * 0 0 * * 0 0 AACAGATAATACGGCCTGCTTTGAGGGCTAACTAAAATGGGTCAGCAAAC (,,;/)&5/()&=)3(&;<:3)=3=)/=&=-.8,9;<=5;,&141<,;/< +853_1242_1158 73 chrM 2264 37 49M = 2264 0 CAATTTCGGTTGGGGTGACCTCGGAGAACAAAACAACCTCCGAGTGATT ][X]]]]]]]]]]X]]]\]]]]]]]]]]]]]]]]]]]]]]\OTRACKW] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 853_1242_1158 133 chrM 2264 0 * = 2264 0 GCCTTTCGAAGAGGGCCAGCGTCTACCAGACTAGCTTCCCTAGGAACAGC =@<=;@@<>==A>>@>=>@=A:>@>???=&;)19(,,&+%+&(&3'3&,& -853_1242_1158 73 chrM 2264 37 49M = 2264 0 CAATTTCGGTTGGGGTGACCTCGGAGAACAAAACAACCTCCGAGTGATT ][X]]]]]]]]]]X]]]\]]]]]]]]]]]]]]]]]]]]]]\OTRACKW] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1243_871 77 * 0 0 * * 0 0 CTGCGGGTAACGGGATGGAGAACGATATTTGATGAAGGTGGACCAACCCG 1),)*=3/4=,9<?,%46//./+1,&1/1,)<)8&,/7(>79,);668); 853_1243_871 141 * 0 0 * * 0 0 TCTGAGACGGCAAGAGGTGAATCACAGATGGGCGTAAACCATTAACTTGC 1&?()&,1>>,(=&:88>/>7=1:77=118:75/988:57283/&))'** -853_1243_871 77 * 0 0 * * 0 0 CTGCGGGTAACGGGATGGAGAACGATATTTGATGAAGGTGGACCAACCCG 1),)*=3/4=,9<?,%46//./+1,&1/1,)<)8&,/7(>79,);668); +853_1265_969 77 * 0 0 * * 0 0 CGGCTGGGGGGGCGTGATGCAACGTTAAAGGGAGGCTCTTGTCAAGAGAA $<)'(')1.8:)()8(,&<//55,'&3,))'846164.001-/+381/72 853_1265_969 141 * 0 0 * * 0 0 AGACTCGGACGGCCGAGGTTACCCCCTTGTTCCCCGGGCGAGTCTACCCC &82,4,54'),%&)'0('.9.$9',;1(#%88)*#8&(,%19,#,871*# -853_1265_969 77 * 0 0 * * 0 0 CGGCTGGGGGGGCGTGATGCAACGTTAAAGGGAGGCTCTTGTCAAGAGAA $<)'(')1.8:)()8(,&<//55,'&3,))'846164.001-/+381/72 -853_1266_828 113 chrM 105 25 49M = 1042 937 AATAAAATTACACATGCAAGTATCCGCACCCCAGTGAGAATGCCCTCTA /3[X]KFLS]]]]]]]]]]][Z]]]]]]]]]]]]]][]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:25 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:4G44 -853_1266_828 177 chrM 1042 37 49M = 105 -937 TAACCAAAGTGTAGCTTAAACAAAGCATCCAGCTTACACCTAGAAGATT \Y]\]]]]]][]]WY]]]]]]]]]][[]]]]]]Y]]]]]W]][T]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:25 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1266_828 113 chrM 105 25 49M = 1042 937 AATAAAATTACACATGCAAGTATCCGCACCCCAGTGAGAATGCCCTCTA /3[X]KFLS]]]]]]]]]]][Z]]]]]]]]]]]]]][]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:4G44 +853_1266_828 177 chrM 1042 37 49M = 105 -937 TAACCAAAGTGTAGCTTAAACAAAGCATCCAGCTTACACCTAGAAGATT \Y]\]]]]]][]]WY]]]]]]]]]][[]]]]]]Y]]]]]W]][T]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1267_170 77 * 0 0 * * 0 0 TGAAATCGGGTTTATGCCTATACCGAGACCGGGGACCAACTAGGGACGGG 30:65905%/#52:2&3(7,532).4;,,+&3$+-(2)50*&0%'&1(1' 853_1267_170 141 * 0 0 * * 0 0 GGAGTGGAGGTGGTCGCCCACCAAAAGGGCCAATTCCGTCGCCATCGCCT &%%#+,4,##,,8.,%/#'*#72&-,.#*2123-&,4$2#,2(.(,,',# -853_1267_170 77 * 0 0 * * 0 0 TGAAATCGGGTTTATGCCTATACCGAGACCGGGGACCAACTAGGGACGGG 30:65905%/#52:2&3(7,532).4;,,+&3$+-(2)50*&0%'&1(1' +853_1277_1774 73 chrM 1180 37 49M = 1180 0 CCATTAAAGTATAGGAGATAGAAATTTTAACTTGGCGCTATAGAGAAAG ]]]]]]]]]]]]]]]]]]]]]]TQXY]]XQZ]]][\\]ZVY]]YWX]]O XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 853_1277_1774 133 chrM 1180 0 * = 1180 0 TCCCTTGACAACACGAATATAGCCAATTCTGCACTATCCTAAACATCACC AA?=??>;<>>@;>A@>:?<,3%&1,,(89'92+4&0)-5+&1,/15%/, -853_1277_1774 73 chrM 1180 37 49M = 1180 0 CCATTAAAGTATAGGAGATAGAAATTTTAACTTGGCGCTATAGAGAAAG ]]]]]]]]]]]]]]]]]]]]]]TQXY]]XQZ]]][\\]ZVY]]YWX]]O XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1278_1160 77 * 0 0 * * 0 0 AAGAGCAATGGGAATGATCATGCCGCTGCGTAATGGAATGGAGTGGAGGG A=<<@AA?>@@@?;?>:>A?>?AAA@7<<,,&//1(+)&9+&&&85(1&9 853_1278_1160 141 * 0 0 * * 0 0 GTAAATCCGACCCCTAAAGAGCCAAGAACCCTAACCAAGGGTCAAAAGAA ;AA==A?:A>?A<?;AA=;79?8><7@<:::8<=97=@9<953=A<8,>6 -853_1278_1160 77 * 0 0 * * 0 0 AAGAGCAATGGGAATGATCATGCCGCTGCGTAATGGAATGGAGTGGAGGG A=<<@AA?>@@@?;?>:>A?>?AAA@7<<,,&//1(+)&9+&&&85(1&9 +853_1280_287 73 chrM 8561 37 49M = 8561 0 AACTATCCTCGAATTCGCAGTAGCCATAATCCAAGCCTACGTATTCACT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y]]\] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:24T24 +853_1280_287 133 chrM 8561 0 * = 8561 0 GATCGTTCGCGAGCATCTGGCTTTCATGTATCTGAGGCAGCGCAGAGTGC >?A??>A>@A?>@><>?><@>@?<@=@8@;@:>;<>/=6<8193@86,/) +853_1280_1640 77 * 0 0 * * 0 0 TGGTAAGACTCCTCCTTTCGGCCCCCAACCCCCCCCCCAACCGAGCTGCC A;?<;<@<<>>A=44:??:<>:=74<:>48;=583==9/8=9:228122( 853_1280_1640 141 * 0 0 * * 0 0 GTTTCACCCCCGTCGATACATACTAAGACCTAACGTGCCCGAACAAAACG 8>*2#8+#%#3/##&=:#$.=2#+1<6&(%@1#($>)#'#8(&$+=&&$' -853_1280_1640 77 * 0 0 * * 0 0 TGGTAAGACTCCTCCTTTCGGCCCCCAACCCCCCCCCCAACCGAGCTGCC A;?<;<@<<>>A=44:??:<>:=74<:>48;=583==9/8=9:228122( +853_1280_1971 77 * 0 0 * * 0 0 TATTTGGTCAGGGGCGAGGGCGGCGGCTTCAATCTTGGGGCAGTGGGTTG )9177)6,3)):16&'/,1:6<()?))()(>5><(1=<?1.&)>/6&(1, 853_1280_1971 141 * 0 0 * * 0 0 ATTTCCAAAGGTTCCTTGAGGAGAAGTGTAAACATTCTCAAGTCCACCAA ))(,8.)1)+/&',)*76&85:4'5$$'#2/&(/#.%#&4.'***-+'37 -853_1280_1971 77 * 0 0 * * 0 0 TATTTGGTCAGGGGCGAGGGCGGCGGCTTCAATCTTGGGGCAGTGGGTTG )9177)6,3)):16&'/,1:6<()?))()(>5><(1=<?1.&)>/6&(1, -853_1280_287 133 chrM 8561 0 * = 8561 0 GATCGTTCGCGAGCATCTGGCTTTCATGTATCTGAGGCAGCGCAGAGTGC >?A??>A>@A?>@><>?><@>@?<@=@8@;@:>;<>/=6<8193@86,/) -853_1280_287 73 chrM 8561 37 49M = 8561 0 AACTATCCTCGAATTCGCAGTAGCCATAATCCAAGCCTACGTATTCACT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y]]\] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:24T24 853_1281_1171 117 chrM 4957 0 * = 4957 0 TTCCTGATGAGGCAGCCTGGATGTATACTTGTGTGTACCACCTGATTGCT '+)&%(%:2&'*151;3:<49>:=<:9;>><<?<=:/=A=?:<A;?<:@< -853_1281_1171 153 chrM 4957 37 37M1D12M = 4957 0 ATACTATCAATTCTGGACTAGGAATTTAGGTTAACATCCAGACCAAGAG FSREOZRIHKRVVZ]WLR]]\YWZTW]]]YRZ]]]]\X]]VVY]]]]]] XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:1 XG:i:1 MD:Z:12T24^C12 +853_1281_1171 153 chrM 4957 37 37M1D12M = 4957 0 ATACTATCAATTCTGGACTAGGAATTTAGGTTAACATCCAGACCAAGAG FSREOZRIHKRVVZ]WLR]]\YWZTW]]]YRZ]]]]\X]]VVY]]]]]] XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:1 XG:i:1 MD:Z:12T24^C12 +853_1289_1050 89 chrM 573 37 49M = 573 0 TAGCAACAGCCTAAAACTCAAAGGACTTGGCGGTGCTTTACATCCCTCT AFW2$ETYZPIR\]XKQ\XUTQ[[@F][]MJ[Z]XQNS]LBMT\XOUWU XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 853_1289_1050 181 chrM 573 0 * = 573 0 TTTAACTGATTGCGGCGGACCGGTTATTGATATAAATGAACTCATGTAGC %*&&$(+36274':;<:5=6;3;:9:675:<74;:?6=:7878:;>>57= -853_1289_1050 89 chrM 573 37 49M = 573 0 TAGCAACAGCCTAAAACTCAAAGGACTTGGCGGTGCTTTACATCCCTCT AFW2$ETYZPIR\]XKQ\XUTQ[[@F][]MJ[Z]XQNS]LBMT\XOUWU XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1290_58 77 * 0 0 * * 0 0 ATAAGAAGGGGGTTCAACGGAACCGTGAACGCCAACCGGAAGTTAATCCC )<:<;9:>9:6==<90;<<9;;=98<;=<:1=<9.7<;6<1;>8;;<9<5 853_1290_58 141 * 0 0 * * 0 0 AGACACAGAAGAAAGACATCATCGACAGGTCCATCGTCGTATGCCAGAGC :846:=:>;;>:9:=8=<=@:;;=;,:9?@;9;><3?=6<1=6=98:/:; -853_1290_58 77 * 0 0 * * 0 0 ATAAGAAGGGGGTTCAACGGAACCGTGAACGCCAACCGGAAGTTAATCCC )<:<;9:>9:6==<90;<<9;;=98<;=<:1=<9.7<;6<1;>8;;<9<5 +853_1297_514 73 chrM 1985 37 49M = 1985 0 GAGGCACTGCCTGCCCAGTGACATCTGTTTAAACGGCCGCGGTATCCTA ]]Z\]]][]]]]UU]]]][[]XLU]]\QR]]NLYY[XU]]\X\][YXNK XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1297_514 133 chrM 1985 0 * = 1985 0 CTAAGTGTGTAACAACCACCCAACACGGCACGTCAAGATGCGCCGATACG 8@8;9>795A<8=9:A?7;@;??;5:><886<;:=6:9:8.=@=:4:9== +853_1297_1934 77 * 0 0 * * 0 0 TAATTTAGGTACGACTAACTCAATAAGCTAATTGAATGAACTAGGACTTA #&6##)0$)#4)#2##44&###7%/2##%1+#$,#*###$##5$#-###, 853_1297_1934 141 * 0 0 * * 0 0 TAGGGCTCACGGACTCCATCGCTACATCCCTCGGGGTGAAAGAAAACAAA 4*%#*,9)-*1751,197()*3-,#94&(-),$##.(#1/7%+#,0&,'0 -853_1297_1934 77 * 0 0 * * 0 0 TAATTTAGGTACGACTAACTCAATAAGCTAATTGAATGAACTAGGACTTA #&6##)0$)#4)#2##44&###7%/2##%1+#$,#*###$##5$#-###, -853_1297_514 133 chrM 1985 0 * = 1985 0 CTAAGTGTGTAACAACCACCCAACACGGCACGTCAAGATGCGCCGATACG 8@8;9>795A<8=9:A?7;@;??;5:><886<;:=6:9:8.=@=:4:9== -853_1297_514 73 chrM 1985 37 49M = 1985 0 GAGGCACTGCCTGCCCAGTGACATCTGTTTAAACGGCCGCGGTATCCTA ]]Z\]]][]]]]UU]]]][[]XLU]]\QR]]NLYY[XU]]\X\][YXNK XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1311_394 73 chrM 7953 37 49M = 7953 0 TTGAGAATCAAAATGAACGAAAATCTATTCGCCTCTTTCGCTACCCCAA 0JAJJLX33PV]]]][]]]]]]]]]]]]]]]]]]]]]]]RS]]]]]]NQ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 853_1311_394 133 chrM 7953 0 * = 7953 0 GGAATTGCCGTCGCGCGCTAGTTGGTTGGGCGTGCATGTTTTGGGTGGGT @=<><<?@?A<>?A>0(6)</.;<>:2<><07:<5(0;(4&&0;&.+1%/ -853_1311_394 73 chrM 7953 37 49M = 7953 0 TTGAGAATCAAAATGAACGAAAATCTATTCGCCTCTTTCGCTACCCCAA 0JAJJLX33PV]]]][]]]]]]]]]]]]]]]]]]]]]]]RS]]]]]]NQ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1312_213 77 * 0 0 * * 0 0 TCGCGAAGGGGACCCGTTATTTTAATAGTGCAGGGCATAACATTTAAATA 6?;==?@<<==A=;=<;8;99:8:<6>:6;<=:3(9/7986)5(./27&= 853_1312_213 141 * 0 0 * * 0 0 GATTCGGACAGAGGGCGAGGCTAGAAGGGCGGAGGGGAGCGGAGGCGAGG ?>:<?=?@=@=>;<<<?<=>?9?=:@<;<6<><61:4,1(2.)2&&,+2& -853_1312_213 77 * 0 0 * * 0 0 TCGCGAAGGGGACCCGTTATTTTAATAGTGCAGGGCATAACATTTAAATA 6?;==?@<<==A=;=<;8;99:8:<6>:6;<=:3(9/7986)5(./27&= +853_1321_1372 77 * 0 0 * * 0 0 CTTTAGCTCGCCTCAATGACCCGAATAGCACCCAGAGCAAGACTCCGCAT 5,7),=/'16=1,,':&,5);118181/18<'6;6/1@9,<9)>,,,&>( 853_1321_1372 141 * 0 0 * * 0 0 TGGACTTCAGTGGCAAGGGCGTCTAAAAATTAAAAGCTACCGTCAAACGC @A,>@(5);A&/6>>;??;7>9?19619>1=/<89<3;81>/=3>7/?/9 -853_1321_1372 77 * 0 0 * * 0 0 CTTTAGCTCGCCTCAATGACCCGAATAGCACCCAGAGCAAGACTCCGCAT 5,7),=/'16=1,,':&,5);118181/18<'6;6/1@9,<9)>,,,&>( 853_1322_846 117 chrM 3881 0 * = 3881 0 TTTTTTTCAAGTTTTCTCGGTTCGTTCGTCTTATTGGCTTAAATCCTCAG 7'8&:41-,72'$(6;-&$,5-('(4-0#;618,47-5)44#;5::;;;2 -853_1322_846 153 chrM 3881 37 49M = 3881 0 AAATAAGCTATCGGGCCCATACCCCGAAAATGTTGGATTACACCCTTCC ]YSUOT]YV]]]]XVNP]]]][]]XTW]\\\]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_1322_846 153 chrM 3881 37 49M = 3881 0 AAATAAGCTATCGGGCCCATACCCCGAAAATGTTGGATTACACCCTTCC ]YSUOT]YV]]]]XVNP]]]][]]XTW]\\\]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_1359_649 77 * 0 0 * * 0 0 GGAGAGGGGCTGCAAAATTTACCGAGCTGCTTCGAGGAGAGCCAAGGCGA <9;5<=;;::6;:;;1?88998<:>4:*91),4.5$7#,4'#$(,5.%)2 +853_1359_649 141 * 0 0 * * 0 0 GACACCCGCTCGAATCCATACACGACATAAGGGGCCTCCTGTGGAAAGCA 7>=41=&7/-)&+,8)/:):7,:<7)/0<:&&;(4(&(86'953.3>'./ 853_1359_2004 117 chrM 8663 0 * = 8663 0 CGCAGCTCGCCTCAGGAGCACTTTGGGACGCCGCTATTTGTGCTCCCTGG ,&94:;&75<=&898947:=>8<2?<><=>A?17;?<?.>>=A=@A<<=? -853_1359_2004 153 chrM 8663 37 49M = 8663 0 GCTTACCACATAGTAAACCCCAGCCCATGACCACTTACAGGAGCCCTAT ZK!%VPT]]\]]]\\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_1359_649 141 * 0 0 * * 0 0 GACACCCGCTCGAATCCATACACGACATAAGGGGCCTCCTGTGGAAAGCA 7>=41=&7/-)&+,8)/:):7,:<7)/0<:&&;(4(&(86'953.3>'./ -853_1359_649 77 * 0 0 * * 0 0 GGAGAGGGGCTGCAAAATTTACCGAGCTGCTTCGAGGAGAGCCAAGGCGA <9;5<=;;::6;:;;1?88998<:>4:*91),4.5$7#,4'#$(,5.%)2 +853_1359_2004 153 chrM 8663 37 49M = 8663 0 GCTTACCACATAGTAAACCCCAGCCCATGACCACTTACAGGAGCCCTAT ZK!%VPT]]\]]]\\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1360_1130 77 * 0 0 * * 0 0 TGCTTAGACTTTATTGCAGTCATAAATACCTATAATCCTTTGTGGTGACA >A@@<9?A:?>>?8@68?=>>9>/9<<44193577>;:;8?#,5.##4,) 853_1360_1130 141 * 0 0 * * 0 0 CAGCTCCATAGCCAATCTATTGCTCACGCAGGTCCGCGCCTACGACGTAT A@AA><:@8>@=AA@>8@A<?<@?@;=<A;A9=?A;<?>:>1>68<6?<; -853_1360_1130 77 * 0 0 * * 0 0 TGCTTAGACTTTATTGCAGTCATAAATACCTATAATCCTTTGTGGTGACA >A@@<9?A:?>>?8@68?=>>9>/9<<44193577>;:;8?#,5.##4,) 853_1361_389 117 chrM 15925 0 * = 15925 0 ATCTTTGGCTTAATCCAGTTCTTAACGACGGGCATTCGTGATACAGCTGT <94:)746=)9:6>)98798><<A=78A<=A?<A==:;7@>4?8>?=9=7 -853_1361_389 153 chrM 15925 37 49M = 15925 0 ACTAATCAGCCCATGCTCACACATAACTGTGGTTTCATGCATTTGGTAT VV]VYYS\[]RP]]]ZY]]]]]]]]]]]]XUY]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:31A17 +853_1361_389 153 chrM 15925 37 49M = 15925 0 ACTAATCAGCCCATGCTCACACATAACTGTGGTTTCATGCATTTGGTAT VV]VYYS\[]RP]]]ZY]]]]]]]]]]]]XUY]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:31A17 +853_1366_1495 77 * 0 0 * * 0 0 AACCATAAGGCGCTAACCACAATCGGTGACACCGGCTCCAAGCTTAGCCA ?;<9)6)&'&;+22'80:-%:&/3.<&)0(;):69;#)67;(8+&<-'%8 853_1366_1495 141 * 0 0 * * 0 0 CTTGAAACGGTACCAAAACCAAAGCGCAACCCTGTCCCGTAAATTTATAT AA;>9>>:<<::?8;>7:>597<>/@6=:8>9=A/:;>:;/9==92/819 -853_1366_1495 77 * 0 0 * * 0 0 AACCATAAGGCGCTAACCACAATCGGTGACACCGGCTCCAAGCTTAGCCA ?;<9)6)&'&;+22'80:-%:&/3.<&)0(;):69;#)67;(8+&<-'%8 -853_1367_802 137 chrM 1422 37 49M = 1422 0 ATTCATAGGTAGAGGTGAAAAGCCCAACGAGCCTGGTGATAGCTGGTTG ]]]]]]]]]]]]]]]]]]]]]][]]]]]]]]]]]]][]]]PEY]]]]ST XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:4G44 853_1367_802 69 chrM 1422 0 * = 1422 0 GTTGTTATAGAACAGTCAACCAGCACTGTCTAAGTGGATTTCCGTGGCGG =<?;$%&<<&(5>='(3><+648A+*:<@#46><#70<>#*.<3237=;% +853_1367_802 137 chrM 1422 37 49M = 1422 0 ATTCATAGGTAGAGGTGAAAAGCCCAACGAGCCTGGTGATAGCTGGTTG ]]]]]]]]]]]]]]]]]]]]]][]]]]]]]]]]]]][]]]PEY]]]]ST XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:4G44 +853_1382_1227 73 chrM 682 25 49M = 682 0 GCCTATATACCGCCATCTTCAGCAAACCCTAAACAAGGTACCAAAGTAA ]]]][Z[\][ZZ]]\XY]][[YY]]][]]UVRQ[[\TSXUVILYPKHS] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:42G6 853_1382_1227 133 chrM 682 0 * = 682 0 CTTGTCCTCTATCATACCAATCTAACTCGACCTTTAGTCTCCTCTCCTCT <;:99:98::8:#5:;:(7:6<#8<6:%0<89,5944,8:9:4/020*), -853_1382_1227 73 chrM 682 25 49M = 682 0 GCCTATATACCGCCATCTTCAGCAAACCCTAAACAAGGTACCAAAGTAA ]]]][Z[\][ZZ]]\XY]][[YY]]][]]UVRQ[[\TSXUVILYPKHS] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:42G6 +853_1383_1269 77 * 0 0 * * 0 0 GGGTGCTGCTGTCTCAACGGGCTGAGGGATAGCTGGTGGGAGCCCTTACC ,@)':/)>6:(*'*9&';-(:),4((/,#31;7&/532*8,5:5*75,+1 853_1383_1269 141 * 0 0 * * 0 0 CTATTGACCAACACAGTTCAAGCCAATTGAAATTAGACTCCCCAGGCGTT /))3(<(152,3),<8:2)37;.6/&7$)1/,$0'%4$3&74).0&0%13 -853_1383_1269 77 * 0 0 * * 0 0 GGGTGCTGCTGTCTCAACGGGCTGAGGGATAGCTGGTGGGAGCCCTTACC ,@)':/)>6:(*'*9&';-(:),4((/,#31;7&/532*8,5:5*75,+1 +853_1395_1324 77 * 0 0 * * 0 0 ACTTTCGCGGCCAAGGCCTCCTCCCTAGGGCCTTCCCGACCCGCTGCGGG )9-',&9*3)9',(1%6%7/4681)11&+:-1/4205()&3',,+$0#%% 853_1395_1324 141 * 0 0 * * 0 0 TAAGGAACCGCTCAACACTTATGGACTCGATCGGCCGCCGTGGTTGAGCC 4*,19./*)96*83;4,/1,)'27)2082,,'*6(&)&*%(*3422-+1+ -853_1395_1324 77 * 0 0 * * 0 0 ACTTTCGCGGCCAAGGCCTCCTCCCTAGGGCCTTCCCGACCCGCTGCGGG )9-',&9*3)9',(1%6%7/4681)11&+:-1/4205()&3',,+$0#%% -853_1396_1014 137 chrM 13417 37 49M = 13417 0 CCAAAAATCAGCATCACTTCTACTAGACTCAATCTGACTAGAGAACATC ]]X]]]\Y]]]]Y]]][]]]][]]]]\]]]WR\]]YX]]]]]]]]QO]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:42A6 853_1396_1014 69 chrM 13417 0 * = 13417 0 GGTCCCCTAGAGTGGGGCCTCGAACCTACAGATATTGAGTCGGGAGCCCG @<@:===?<;==98<:9>9:=:;@;:;=68::<:::;>:::><<863>9; +853_1396_1014 137 chrM 13417 37 49M = 13417 0 CCAAAAATCAGCATCACTTCTACTAGACTCAATCTGACTAGAGAACATC ]]X]]]\Y]]]]Y]]][]]]][]]]]\]]]WR\]]YX]]]]]]]]QO]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:42A6 +853_1412_1664 89 chrM 2467 37 49M = 2467 0 TAATGGTGCAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAAAGTCT WKT\NDIZ]NMRMTZ]]JH,/NDHHV]TTE>RZ]]XMVVSJJZMRYY]! XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 853_1412_1664 181 chrM 2467 0 * = 2467 0 TATACGACGAATCATTAGACCTCGGGTTGTGTTCAATTCCTGTCCAGATC (&&&1.)0&1,&$31'.$1-&)#13,*%)+,'$/4,$$*/,5,765)545 -853_1412_1664 89 chrM 2467 37 49M = 2467 0 TAATGGTGCAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAAAGTCT WKT\NDIZ]NMRMTZ]]JH,/NDHHV]TTE>RZ]]XMVVSJJZMRYY]! XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1413_877 77 * 0 0 * * 0 0 GACGGTCGTCCCTATTGTATTCGTCTCTCCGTGTCGTGACGTTGCCCGGT &)#*648#,9(.#3&&(#9.2,#/%3)#&555#).%3#19-4#4'3,#2+ 853_1413_877 141 * 0 0 * * 0 0 AGGTCAGTTTCCAAGGTGGGGGTTGGCATTACGTACCATTCGATTAGATT ?A?<<;A><?;A=<;;>856/>#%###&###%####&&###$$$&#%#$$ -853_1413_877 77 * 0 0 * * 0 0 GACGGTCGTCCCTATTGTATTCGTCTCTCCGTGTCGTGACGTTGCCCGGT &)#*648#,9(.#3&&(#9.2,#/%3)#&555#).%3#19-4#4'3,#2+ +853_1437_116 77 * 0 0 * * 0 0 AGCTGCGGCAGCCGAACACGGCACAAGGTTGGATAATCACCGGAAGTGGA $;,)42'#2(#&,,#%#2,2%,',42#$))#*428#%$2.%$%4%*#)%& 853_1437_116 141 * 0 0 * * 0 0 CCCAAACCAGGCTCGTCCCCTTTAAGATAGTCTCGCCCCCCCTCAACTTG 6>>9;<@7=::=:>=544=54#'8&5-2)#(*)4,&%+#',2-&+&0-*2 -853_1437_116 77 * 0 0 * * 0 0 AGCTGCGGCAGCCGAACACGGCACAAGGTTGGATAATCACCGGAAGTGGA $;,)42'#2(#&,,#%#2,2%,',42#$))#*428#%$2.%$%4%*#)%& 853_1437_1533 117 chrM 9411 0 * = 9411 0 CGCAATTAAACTTAATGCGACATAAATAGCGGCATCGGACCTCCATACTG #%*(4-#(4%$#$&4+*2586;9A<89:><5=?>;=?>=:<=8>>:?<@> -853_1437_1533 153 chrM 9411 25 49M = 9411 0 TCTATTGATGAGGATCCTATTCTTTTAGTATTGACCAGTACAATTGACT ]]]]]VV]UY]][]]VX]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:1T47 +853_1437_1533 153 chrM 9411 25 49M = 9411 0 TCTATTGATGAGGATCCTATTCTTTTAGTATTGACCAGTACAATTGACT ]]]]]VV]UY]][]]VX]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:1T47 +853_1486_1272 89 chrM 9431 23 49M = 9431 0 TCTTTTAGTATTGACCAGTACAATTGACTTCCAATCAATCAGCTTCGGT NHVQR]SN\][RQO@MTMYUVVT]SU]]OJYYXVSSKOSSTRS]]XUOU XT:A:U CM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrM,-9432,1S48M,3; 853_1486_1272 181 chrM 9431 0 * = 9431 0 ACTATGAAAAGCCTCCCGACGCAAGAAAGCATTCACGATATGGACATAGC 22%-,))%99<168=961#151,#/9(3%89/76:7)55965689<<7(7 -853_1486_1272 89 chrM 9431 37 49M = 9431 0 TCTTTTAGTATTGACCAGTACAATTGACTTCCAATCAATCAGCTTCGGT NHVQR]SN\][RQO@MTMYUVVT]SU]]OJYYXVSSKOSSTRS]]XUOU XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_1487_496 77 * 0 0 * * 0 0 TTTATTACGGGCGACGAAACGAATGGTATTTCCCTTGCGTTTTTCGCTTG <,'+856638:)0*.,+&.;7&1+;5-&1779<0:+3)/&+;1&,7()(( 853_1487_496 141 * 0 0 * * 0 0 GTCGCACCCCTCCTAAACCCCAGATCAAAAACTGCACCCGCGACCCACTC 6969=651<=::86774;7:<9=/69>0366/8,,8=:</6&31(3,/&) -853_1487_496 77 * 0 0 * * 0 0 TTTATTACGGGCGACGAAACGAATGGTATTTCCCTTGCGTTTTTCGCTTG <,'+856638:)0*.,+&.;7&1+;5-&1779<0:+3)/&+;1&,7()(( +853_1488_605 77 * 0 0 * * 0 0 CCCGTAAGGAACGGGGATTAGAAGGATGGCAGGGGAGTGGAAACGAAGGG (%/)'(32+'))1*6776&2%)8&,7)71'2&$5+%))724&0)$('&(' 853_1488_605 141 * 0 0 * * 0 0 TCGCCGCCAAACGATGCACTAATTTGCTTACCGGCCAGGCACGGATCGAA 0)&)&1)/1(6)&(+),1=/*&&(&41,',)&1/(/,9/)1//<)&:15, -853_1488_605 77 * 0 0 * * 0 0 CCCGTAAGGAACGGGGATTAGAAGGATGGCAGGGGAGTGGAAACGAAGGG (%/)'(32+'))1*6776&2%)8&,7)71'2&$5+%))724&0)$('&(' -853_1489_374 137 chrM 14307 37 49M = 14307 0 CCTAATCCTCCAAATCCTAACAGGCCTATTCCTAGCCATACACTACACA ]][NR]Z]]]]]]]]YXWQY]]WZ[\]]]PT]]]PU]]]X[]XR]]]]\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:16T32 853_1489_374 69 chrM 14307 0 * = 14307 0 CTCTTCAAACTGACAGCGCAATGGATGAGGCCACAAAAAGAAACTTTAAA >8786=:8:3:2;;;6(=99.3=5*/,%'(+#7121074(25$0,+%,27 -853_148_1347 133 chrM 14085 0 * = 14085 0 TAAGGCCCGTGCCGGTCCGTCCAATGATATTGGAGGAGTTCCGGAGCAAG A=;@>>?=@@A@?A@>@A@=9?9<A@;9>>>>>7;=8<=;8;?;18?62= -853_148_1347 73 chrM 14085 37 49M = 14085 0 ACTCAAAATAAACACAATATATGTCATCATTATTCCCACGTGGAATCTA #$]]]]]]]]]]]]]Z[]]]][V\\[]U\[Z]KQ]YOQW]]QUYWWZTQ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_148_1509 141 * 0 0 * * 0 0 TGAATGTAAATTAAACGGGAGGAAAAATCTCCCCACAATTGAGGCCTTCC ./<&1=35>,/3(6,,1<3*)7,53)69<&(A<8+(;91).8&+7(:&<7 -853_148_1509 77 * 0 0 * * 0 0 GCTGGGTGAAAAGGCCCCGGCTTCACAGAATGTAATTTCTAATAGTCTTT -'-:+&1.,)&&=(=)?7=<=4&,>:(;,&<))))8)+(,'&(4&,(,3) +853_1489_374 137 chrM 14307 37 49M = 14307 0 CCTAATCCTCCAAATCCTAACAGGCCTATTCCTAGCCATACACTACACA ]][NR]Z]]]]]]]]YXWQY]]WZ[\]]]PT]]]PU]]]X[]XR]]]]\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:16T32 +853_1493_452 77 * 0 0 * * 0 0 CGCTCTCCCGATTCAGCAAAACAAACAAGGCTCCACCGTCCCGGGGCCGA '$),&/'53(%$((6'*'(&+%694&(2.1'&1(3&2'9/%)(&)()'(/ +853_1493_452 141 * 0 0 * * 0 0 GAAAGGACCAAACCAGGAGCATCCACCCATGGCCGCTAAACTAGGAGGAG $*)&'#,,,##(*#'%#%##(#))###%$$$##%###$#)###'#%%(%# 853_1493_1908 117 chrM 14920 0 * = 14920 0 TTGTGGTATAAAGGACACGCCTTGGTGGCCAAGTTGTCAACGTAATCATG ;<<9:=7<;;9<?=<;9<<=<88?>==;?<==;;=><;===:::>?;<@; -853_1493_1908 153 chrM 14920 37 49M = 14920 0 TTCTCCCCTGACCTCCTAGGAGACCCAGACAACTACACCCCAGCTAACC YY[]]ZX]]YYY[]]]]]]][\]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:8C40 -853_1493_452 141 * 0 0 * * 0 0 GAAAGGACCAAACCAGGAGCATCCACCCATGGCCGCTAAACTAGGAGGAG $*)&'#,,,##(*#'%#%##(#))###%$$$##%###$#)###'#%%(%# -853_1493_452 77 * 0 0 * * 0 0 CGCTCTCCCGATTCAGCAAAACAAACAAGGCTCCACCGTCCCGGGGCCGA '$),&/'53(%$((6'*'(&+%694&(2.1'&1(3&2'9/%)(&)()'(/ +853_1493_1908 153 chrM 14920 37 49M = 14920 0 TTCTCCCCTGACCTCCTAGGAGACCCAGACAACTACACCCCAGCTAACC YY[]]ZX]]YYY[]]]]]]][\]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:8C40 +853_1498_1797 77 * 0 0 * * 0 0 CCTCAGCGCCACCCAGCTTGGAAAACTAAACAAACAAATAAACTTTCACT &&&&&#&#######&$##&########$&$###&$$$###$$#$#$#### 853_1498_1797 141 * 0 0 * * 0 0 TGAAGGTCGCATGGCGCGGATTGCACAGCAGATCAACTGTTTCAAAAACA 3=#&&04&',.8#*&-:&.*./$'#);%.$21'0&&/&###4$&%%0$#$ -853_1498_1797 77 * 0 0 * * 0 0 CCTCAGCGCCACCCAGCTTGGAAAACTAAACAAACAAATAAACTTTCACT &&&&&#&#######&$##&########$&$###&$$$###$$#$#$#### 853_1499_1261 117 chrM 2408 0 * = 2408 0 TTTCATTTAACACCGGGAATGGTTCACAATCAATGCCCGAGCAGCACAGT /2&7=)6&?<)/56<9:<9:7&;7<:<9<89;>9A><>>?5<<;=<=:;: -853_1499_1261 153 chrM 2408 37 49M = 2408 0 ATTCCAGAGTCCATATCGACAATTAGGGTTTACGACCTCGATGTTGGAT ]/4ZY]\\QT]KO]]YMXZ[WOMN]]TW]]]\VSYQSSQXVWQT[RY]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1499_1261 153 chrM 2408 37 49M = 2408 0 ATTCCAGAGTCCATATCGACAATTAGGGTTTACGACCTCGATGTTGGAT ]/4ZY]\\QT]KO]]YMXZ[WOMN]]TW]]]\VSYQSSQXVWQT[RY]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1509_820 77 * 0 0 * * 0 0 GCAACCTGACCGTTTACACAACGTGTGGAAAAGAGGTGGGAGAGGGTTGG 18;:.49;5+6/<=879672373=.:;;47$'%06262%562%':5$5&: 853_1509_820 141 * 0 0 * * 0 0 ACAAGAGACTACGAGGACACACTCCGGCCCTAAATCGCGAAAAACGGCCC ',.1438/1)&1*3.18,72875),/*&://.4&),+/#+3%5*)56((& -853_1509_820 77 * 0 0 * * 0 0 GCAACCTGACCGTTTACACAACGTGTGGAAAAGAGGTGGGAGAGGGTTGG 18;:.49;5+6/<=879672373=.:;;47$'%06262%562%':5$5&: 853_1510_448 117 chrM 982 0 * = 982 0 CCGCACCGGGCAGCAGCCAGGAGGATTATGGGGTACCTGATGTTGTTTGT ##$########''%$+'4)%0%34)82'2,(/27/,*:4'2177460826 -853_1510_448 153 chrM 982 37 49M = 982 0 CCAAACATATGAAAGGAGACAAGTCGTAACAAGGTAAGTATACCGGAAG QSZ\WTIO[MGR[]]UO]]Y[WWYTSPY]Y[X]]XZV[]TRU[Z\[Z]$ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1510_448 153 chrM 982 37 49M = 982 0 CCAAACATATGAAAGGAGACAAGTCGTAACAAGGTAAGTATACCGGAAG QSZ\WTIO[MGR[]]UO]]Y[WWYTSPY]Y[X]]XZV[]TRU[Z\[Z]$ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1511_561 73 chrM 1971 37 1M1D48M = 1971 0 CTTCCCAGTATTAGAGGCACTGCCTGCCCAGTGACATCTGTTTAAACGG !!\]]]]]\]ZW[]]QQ]]]Z]]UT[]]]]]]]]]V[]]]SAMXYTTXK XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:1^A2T45 +853_1511_561 133 chrM 1971 0 * = 1971 0 GCAAACCGTTCTGATGTAAACAACGTCAATTTGGGCCTTTACAAAGCGTT ?A===@A?><A8A>:>9;;=@828;'#+99:#'9;;4#>6-1/89,-&45 +853_1511_1886 77 * 0 0 * * 0 0 GGATAGTAGGAACGAGATGCGGGGAACCCGTTTGGTGCTCGGCGGGTGTG :A(>/2;&>='7&>::(1678>>:1&(<::11,.<8,(),8>%8</):(< 853_1511_1886 141 * 0 0 * * 0 0 GACGTCGTCGTCGTCGTCGTTAACCCTAAGGTTCGCGGGACCCCTCAACA 99;<=:>?<;=8;>=;8=<==9:8::==:9,8?:;)0<6.13;+:*5/:) -853_1511_1886 77 * 0 0 * * 0 0 GGATAGTAGGAACGAGATGCGGGGAACCCGTTTGGTGCTCGGCGGGTGTG :A(>/2;&>='7&>::(1678>>:1&(<::11,.<8,(),8>%8</):(< -853_1511_561 133 chrM 1971 0 * = 1971 0 GCAAACCGTTCTGATGTAAACAACGTCAATTTGGGCCTTTACAAAGCGTT ?A===@A?><A8A>:>9;;=@828;'#+99:#'9;;4#>6-1/89,-&45 -853_1511_561 73 chrM 1971 37 1M1D48M = 1971 0 CTTCCCAGTATTAGAGGCACTGCCTGCCCAGTGACATCTGTTTAAACGG !!\]]]]]\]ZW[]]QQ]]]Z]]UT[]]]]]]]]]V[]]]SAMXYTTXK XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:1 XG:i:1 MD:Z:1^A2T45 +853_1530_202 77 * 0 0 * * 0 0 GGTTCATGGCGGGACATGAGGTGCCATACCGCAACCCTCTAGGCTGATCG /9::8:7;58;0<%;;9=(3;8<1;73;16;1=57686/585:30;/<61 +853_1530_202 141 * 0 0 * * 0 0 GGGGACTGAAGAGCGGCCATTAAGGGAGAATTGAGGAGAAGAGATGAGAA ;<;99=:99>6>8:8<?:898A=2<7@88>)6#/+,&)(#,'-%#+-*%( 853_1530_1652 117 chrM 5148 0 * = 5148 0 AGATTCCGGCATTTCAGCTAGTGCCTGCCCAGCCGTATATATTCGGCAAA +$5/5&$4982/;*;5#:3;(%;:;0'<7952:561);57)#<0-%6;58 -853_1530_1652 153 chrM 5148 37 49M = 5148 0 AATTTTAGTTAACAGCTAAATACCCTAATCAACTGGCTTCAATCTACTT DM[\UX]]\V[]]]]]]]]]]Z]]]]]]]]]]]]\]][]]]]]]]]]]\ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_1530_202 141 * 0 0 * * 0 0 GGGGACTGAAGAGCGGCCATTAAGGGAGAATTGAGGAGAAGAGATGAGAA ;<;99=:99>6>8:8<?:898A=2<7@88>)6#/+,&)(#,'-%#+-*%( -853_1530_202 77 * 0 0 * * 0 0 GGTTCATGGCGGGACATGAGGTGCCATACCGCAACCCTCTAGGCTGATCG /9::8:7;58;0<%;;9=(3;8<1;73;16;1=57686/585:30;/<61 +853_1530_1652 153 chrM 5148 23 49M = 5148 0 AATTTTAGTTAACAGCTAAATACCCTAATCAACTGGCTTCAATCTACTT DM[\UX]]\V[]]]]]]]]]]Z]]]]]]]]]]]]\]][]]]]]]]]]]\ XT:A:U CM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrM,-5149,1S48M,3; +853_1569_1617 73 chrM 15857 37 10M1D39M = 15857 0 TTCAGGGCCATCCCACCCAACCTCGCCCATTCTTTCCCCTTAAATAAGA ]]]]]]]]]]]]]]]]]]]]]]]]WX]]]\Z[]]QO]]\OQUSWMNK5I XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:10^T39 853_1569_1617 133 chrM 15857 0 * = 15857 0 TAATTGTATATAAATGCTGCATGCCGGGAAATTGTGCAGCTACGTGGAAG <A@=>?><<>=@@?=@?;=<=<9A<==;AA>;57:<?<;75>67695@:6 -853_1569_1617 73 chrM 15857 37 10M1D39M = 15857 0 TTCAGGGCCATCCCACCCAACCTCGCCCATTCTTTCCCCTTAAATAAGA ]]]]]]]]]]]]]]]]]]]]]]]]WX]]]\Z[]]QO]]\OQUSWMNK5I XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:1 XG:i:1 MD:Z:10^T39 +853_1570_1472 77 * 0 0 * * 0 0 CACCGGGACTAAATTAGCTTCTCGTTCCAGGCGCATCGGACTCACGTTAT @A=?<A?@?A=9=AA=@=;>?>?<@=><=:<@9=,A?;<<7<=61;>9/? 853_1570_1472 141 * 0 0 * * 0 0 CGACGCACGTCCGCAGGTACCAGGAACGTCATCCGTAACCGCGGGCACGC <=<>==;=:@>@<@==AA?A@>A?@<@?=A9>@?;>=9?<9>A>><3;=7 -853_1570_1472 77 * 0 0 * * 0 0 CACCGGGACTAAATTAGCTTCTCGTTCCAGGCGCATCGGACTCACGTTAT @A=?<A?@?A=9=AA=@=;>?>?<@=><=:<@9=,A?;<<7<=61;>9/? -853_157_314 141 * 0 0 * * 0 0 GATAGCAAAAAAAGGGGCCGAGCGCAAAAGCCGACCTGAGCACAGACGAA 9;:5461242#)#*1####('$$$##'#%#'$$%###/$%($#'#$$#+# -853_157_314 77 * 0 0 * * 0 0 CTCGCCTGGAATTTAGCCATGGCTATGTTCTAGGTGCTTTGTTAGTTGCG 79();(1<))&2(5+&8&+.9-'198,',))&&7&:*,4)(6&2&/:&77 -853_157_582 117 chrM 893 0 * = 893 0 ATTTTGATATTGCCTAAGCCAGGAGGATTATGGGGTACCTGATGTTGTTG 2&==93398<:46<@<:?:==6>:<<<=?=>;;<;A;;:>;;><::??:= -853_157_582 153 chrM 893 37 49M = 893 0 GCTTAATTGAATCAGGCCATGAAGCGCGCACACACCGCCCGTCACCCTC O/3]Y[12]PSUUY\]XXYZ\VY]]]]]]]]]]]][]]]]]]]]]]]\\ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1585_323 73 chrM 8665 25 49M = 8665 0 TTACCACATAGTAAACCCCAGCCCATGACCACTTACAGGGGCCCTATCA #"]\X]]]]]]]\]]Y[]]]QO]]\PPYZ]\Y\WXULU]PDPYVVSIQ\ XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:39A9 +853_1585_323 133 chrM 8665 0 * = 8665 0 CAAGGGACTATAACTGAGGGGTGTGGAGCGGTTGGTTGGCCAGCGCATTA <;:>?<0<;;=;9781&(,95'+$-+2#,#'',1',$,$1/5+#2)6%&( +853_1585_2023 77 * 0 0 * * 0 0 AATAAATATTACCATTTAAGAAGGAATACGAAAAGACGCCGGCGTCCACT :A=>5#:==<+=<==)=?<=&<=<>%<<?;)<=<=#>9<:$<;;:&?3<5 853_1585_2023 141 * 0 0 * * 0 0 AGGGGGATGCAGGCAAGACAAACGGCACGGGCGTGGGGAGAGGTCCCAAG ?>@A>=44@@8<5A<7>:=?577<?867=>4588>:;88<59;<=:;)9= -853_1585_2023 77 * 0 0 * * 0 0 AATAAATATTACCATTTAAGAAGGAATACGAAAAGACGCCGGCGTCCACT :A=>5#:==<+=<==)=?<=&<=<>%<<?;)<=<=#>9<:$<;;:&?3<5 -853_1585_323 133 chrM 8665 0 * = 8665 0 CAAGGGACTATAACTGAGGGGTGTGGAGCGGTTGGTTGGCCAGCGCATTA <;:>?<0<;;=;9781&(,95'+$-+2#,#'',1',$,$1/5+#2)6%&( -853_1585_323 73 chrM 8665 25 49M = 8665 0 TTACCACATAGTAAACCCCAGCCCATGACCACTTACAGGGGCCCTATCA #"]\X]]]]]]]\]]Y[]]]QO]]\PPYZ]\Y\WXULU]PDPYVVSIQ\ XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:39A9 -853_158_402 141 * 0 0 * * 0 0 TCACAGACCCGAGGAAGCTTCGTATATTTGCCACTAAGGGCGTCGGGGGA 5;&35,<55<8<6;<3646:618477::95<92=752071+2339-.#11 -853_158_402 77 * 0 0 * * 0 0 GGTTGTTAAACCGTCCCGGGCGTTATCCACGTGTGATACCCGCGCATGTG 711&$(-)##.,&((&(4('83><-:94,'.;2&*:<0%&7,3#+02#(# -853_158_569 137 chrM 6195 25 49M = 6195 0 ATCCATTGGCTTTCTAGGCTTCATCGTATGAGCTCACCACATGTTTACA $]\YYYQM\]\WX]\\MN][YQS[\WS\YV]]VV]]MFY\]XPSV]SGL XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:30G18 -853_158_569 69 chrM 6195 0 * = 6195 0 TTCGTAATTATATTTGTCGGGCATTATGAGTACGGAGGTTATTATATAGG 8>34:8.56,9/7<=-80.562,994:)3,<#%85(,#7&%,'#3#,#%& +853_1603_500 89 chrM 13884 25 49M = 13884 0 CTCAGTAGCTATAGCCGTTGTATAACCAAAAACAACCAACATTCCTCCC ,T]YOQSTUSUY[\XU[]]ZZTY][]]]]]][\]\]]]]ZVX]WZ]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:9C39 +853_1603_500 181 chrM 13884 0 * = 13884 0 AACAGGCCGACTTTGGTCCAGGGGAAACGTTTGGTGACTCAGAATAGGTC %/06321266(/.:504#:7(&,9:39544<<8<95<2>:8<8:=87:<: +853_1603_1995 77 * 0 0 * * 0 0 CCAGGGAGATCCTAACGTGGAGCCGCGAATACTCCCAACCACCTATACAG :;;;>=<9A==;9:=;6::?:9@<@:8<<;:6><@<<9;@595:684279 853_1603_1995 141 * 0 0 * * 0 0 CTGGTACCGGTATGAGCCTAGGATAGAGCGGCAACTCTTATACTGCCGGT 9=:8;>>=<==<<>=AA@><A><<=?>?=<<??<<;?;;?<86=<9?=3; -853_1603_1995 77 * 0 0 * * 0 0 CCAGGGAGATCCTAACGTGGAGCCGCGAATACTCCCAACCACCTATACAG :;;;>=<9A==;9:=;6::?:9@<@:8<<;:6><@<<9;@595:684279 -853_1603_500 181 chrM 13884 0 * = 13884 0 AACAGGCCGACTTTGGTCCAGGGGAAACGTTTGGTGACTCAGAATAGGTC %/06321266(/.:504#:7(&,9:39544<<8<95<2>:8<8:=87:<: -853_1603_500 89 chrM 13884 25 49M = 13884 0 CTCAGTAGCTATAGCCGTTGTATAACCAAAAACAACCAACATTCCTCCC ,T]YOQSTUSUY[\XU[]]ZZTY][]]]]]][\]\]]]]ZVX]WZ]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:9C39 -853_216_501 141 * 0 0 * * 0 0 CTTTTAATGGGTCCCTCTCTTACAAGGCTCTGTTAATTTTTCCTTTCGAA 85<85,7=47;:627;<6<4<::445934*:5<2)$9&-$273#/#6-.* -853_216_501 77 * 0 0 * * 0 0 CCCTGGCCGGTCGGGTGCGTCACGCGCCTGGCGGAGCTCCTAGCCACGCC />61=+11:/5/+/(&/1'%#:3&;&93(';0$4&*9,&/+))2')65.& -853_216_648 117 chrM 1235 0 * = 1235 0 CGAGGCAGCCCATTGAGTTTGGTCCCCCTTAGTTACAGGATTTCCAGCCG +&'%(14'2,09:7(776;53=99/58>75;88784;/:8)884;7/;6/ -853_216_648 153 chrM 1235 37 49M = 1235 0 AAGGGAACGATGAAAGATGTATTAAAAGTACTAAACAGCAAAGCTTACC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]SU]]]YY]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:19C29 -853_218_1907 133 chrM 1146 0 * = 1146 0 GAATGGCTTGACAAAGGGAGAAACGCATATCCTGTGATGTTATTTAAGAG 5).5<9?642>9+;9<;;:28=4886909479&7,3;&#9+:,6'5,(&/ -853_218_1907 73 chrM 1146 37 49M = 1146 0 TACCCTTAGTCACTTAACTAAAACATTCACCAAACCATTAAAGTATAGG YQOTRVYOS[\Z[XX]\YOS]XW]]\Z[X\ZUZWZ\XVVZQPMKWTUJ> XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_219_184 141 * 0 0 * * 0 0 CAGTAGTTGCATGAGTCATGAGGTTGGGTTGTTGGCAGCTGTTGTCGGCT '*)%%,,##3,1+,,#'&)#+#/-),%(&+$)%#%$&(&/#&(#%#'$%$ -853_219_184 77 * 0 0 * * 0 0 GCATTTGCGACCATTTTGGGGTTGGTGGGGTGGGTGGCCGGTGGGTTGGG /&3&,)/,$)/&)2&#%(:/+#,*&$+$$(&1)/&+1##'&'#-,)&'%- -853_233_615 141 * 0 0 * * 0 0 GCCTTAAATCGATATAGTCGCGGGCCCCAACCGGGCCGAGTACACTGGGC ;@),<%8)(&<(0)<&<)&53.*%/,5,6*/6;.)+>,%.,7,#,,*$%$ -853_233_615 77 * 0 0 * * 0 0 TTATGGATTAAATTTTAGCTAATTTGGCCCCTATGGATAAGGAATCCCTA (7.1:154753447,222383647814041,3+,4.-/%+21((2)2'7) -853_233_834 137 chrM 8993 37 49M = 8993 0 CCACCCACAGGTATCCACCCCTTAAACCCCCTAGAAGTCCCCTTACTCA ]]]]]]]]]]]]]]]]]]]]]]\\]]]]]]]]]OQ]]VY]]SOVQ\]YS XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_233_834 69 chrM 8993 0 * = 8993 0 GGGAGTTCTAGTGGAGAGATTATTCGCCGCCAGCTGCGTTGAGAGATGAA =<<=;><:6:;<<3>=:=8>><<8;<=63;>99099&%,##&'2##%/$% -853_244_474 141 * 0 0 * * 0 0 CGGACAGAACGAAAACTCCTAACAACAGAGCTGAGCAAACCAATCCAGCC *$(5.+###%$$2*+'#$('/(#*$$$$0%'$$3',$(*#&'4(%$#/$$ -853_244_474 77 * 0 0 * * 0 0 GATTGAGAAGGCTGCAAACGGCGAACGACCGGGCGGCCTAAAACCACGGA )15$&/&*,&,,(&&0.,&,07:)/1/4&))96&)'/&''.(+&1'&)'' -853_244_781 117 chrM 652 0 * = 652 0 GCAGCCACGAATGTCAAAATCTGGACCACTATACGGTGTCATAAATTCTT &24)57:,,<=892<?=>;9>989@=;>;:?7><<>;=7=86>>;:9><8 -853_244_781 153 chrM 652 37 49M = 652 0 CGATAAACCCCACCATCCCTTGCTAATTCAGCCTATATACCGCCATCTT ZOE[\XROW[]ZQJW]I?T]]][]]]]Z]]][Y]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_255_146 141 * 0 0 * * 0 0 GGGAAGAGCCAGGGAGGACTGGGGCTGGAGCAAAAGAGGCGAGGGGGGCG #$##$%###&##'#&##$###&#&$######$####%%$$/$'%$'#$$# -853_255_146 77 * 0 0 * * 0 0 CCTATGTCCCCTGACGGCACGCCGGGTCACCGAGCCGGGCCGCGCCCGCC 5.)8&)'++7:',%'&&,(1)1/8'('%1)20#%,4-$.&$''(1(0(/7 -853_255_403 117 chrM 13900 0 * = 13900 0 ATCCTCAGCACATAAGTGCGTGATTACCGATTGTATCATCGCTCGGTTGT 130>7&9+9:-83?<09=>;85?>=78;<<=99;>)87;>;9;=>?<:8< -853_255_403 153 chrM 13900 37 49M = 13900 0 GTTGTATAACCAAAAACAACCAACATTCCTCCCAAATAAATTAAAAACA 7FFGW]]]RIS\]]YT\]SMKT\TW[\\]Z[]]]]]]][[]]YZY]]Y\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:41C7 -853_256_428 141 * 0 0 * * 0 0 ACGAAGCGGTGTACCTGGCCCTACGCGGAAAGGGGGAAACCTTCCCAAAT @?8<A:A969=<:71?;;<5==>81><1<&??:264@>>/=<-819><() -853_256_428 77 * 0 0 * * 0 0 TAATTCAAGCAGATAAAAGAGTGTGCGCCCACCCTCCAAGGAAATAGAAA 2=<66<=>6::3<,8;>:3<3825,:1:98897,057::24<986:+,:: -853_256_834 117 chrM 9813 0 * = 9813 0 GCCCTCTGGCAAACCTACGGTAAGTTTGCCATGGAATCTTTGGCGACATT ######$$##############$#&####$&$##&##########)#&%' -853_256_834 153 chrM 9813 37 49M = 9813 0 TGAACCCAAAAAGGGCTAGAATGAACTGAGTATGGTAATTAGTTTAAAC DL]TAFU]\TDH]]]WZ]\NU\VZVU\]]]Z]]Z\\Z]]]]WZ]]]WWX XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:14A34 -853_266_1092 141 * 0 0 * * 0 0 GGCGCGGATTATTGTCTTAGCTTTGCTACCGTTATATGCGCTTGTCTTGT ,318925,37;9,999<52622989/:7220#3$247,',*1'##,1,#5 -853_266_1092 77 * 0 0 * * 0 0 GAGCCGGAACGAGACAACCCGTTCTTAACATCCACCACGCGTGGGCGACG ;)2))/8%'10:712<67<3(39</68/5)6&')/170&49)6)//,)&& -853_266_697 181 chrM 1002 0 * = 1002 0 CAAGTCCACTTATATATGCGCATCGGGTTTTTGGTGGAAGGTTGTCATGT ::<;9796:::;9;;;<4>=2=;<;?=>?=;==?><6;:<:<>=@>;<=? -853_266_697 89 chrM 1002 37 49M = 1002 0 AAGTCGTAACAAGGTAAGTATACCGGAAGGTGTACTTGGATAACCAAAG ]]]SQVY]]\]Y[ZY][]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]# XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_279_1056 141 * 0 0 * * 0 0 TGGAGGGTACGATTAGAAGAGGAGGCGGTACAAATAGACAATTCCTCACT =<;<<=;><:>;=<<=>=:<<>=;<;=;<==8<87<7@8=<9<9;:1:3: -853_279_1056 77 * 0 0 * * 0 0 TGTGCTCTTCCGTCATAAGAGAACCTTAAGCTATCACGGACACAGCGCCG :;76;:=;:<7::;<<<3<76;:<9=<5;87=3<=5@3<7388771:;5< -853_279_1330 117 chrM 8561 0 * = 8561 0 CTTTTTCCTTCCCTTGCTTCGGTGAGCATGAGTTGCCTTCCGTTTTTTAT 7%,117%%154#2639#1#,5'+)23%($$1#$#1<$&>-<-'9)4).<+ -853_279_1330 153 chrM 8561 37 49M = 8561 0 AACTATCCTCGAATTCGCAGTAGCCATAATCCAAGCCTACGTATTCACT JI[VXUU]]][\]]]WW]]]]\]]]]]]]]V]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:24T24 -853_292_158 141 * 0 0 * * 0 0 AACTTTTCTGGCATTTGAGCGCGTTTTGGAACTGACGAACAGATGCTCCT ===9<<;<=<<>:<:=<>::7=9<=:;9:>;;98=58>;>4=@;:,;=1= -853_292_158 77 * 0 0 * * 0 0 AATGTGCGTTTAAATATTCGGTCTTGGATGCTGATCAGCTAAAACGTATG ;=;;9;>>89=><94<;>9:;:896;;<8;3<<177=:5<6=:73<:9'9 -853_292_700 117 chrM 2055 0 * = 2055 0 CCCCACCACACCAGCCCCCCAAGCTTATACCCCGTACTCTCCTCATTACC 5.&/,#/++%):4'*/66:/.<6:82<6715=74+&>;<8:;>;=9<;9= -853_292_700 153 chrM 2055 25 49M = 2055 0 CACTTGTTCTCTAAATAGGGACTTGTATGAATGGCCACACGAGGGTTTT U[XVKS\MRZS\]ZTXZX]WT[[]]]ZUUT]]]]WVZ]]]]]]\ZUU\& XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:9C39 -853_33_1583 141 * 0 0 * * 0 0 CCCGCGCTCCCGATAATATAATCACCGAAACACGAAGACCAACAGGCCCA ),+&#,)',$##2$),%2'+#$)2),#$(+#+##&*%(-%1%#(##$$2, -853_33_1583 77 * 0 0 * * 0 0 TATGTATTTCGGTACCGCACAGANCACTCCAACCCGATAGCGTCAAGTCC /&2%,)+,+:&#:;,5*)8/%19!,%*1/%;#<952%:27#%%&4.,#-1 -853_33_1649 117 chrM 7331 0 * = 7331 0 TCACCTAATCTGCATGCAGCTCTGTCNTCATGTAGGAGTTAGAACGAAGC %1.)#$$1%%$)#)$&);=1968:42!:8<:78;888<6688=<<9<:9< -853_33_1649 153 chrM 7331 37 49M = 7331 0 TCACAGTCAAAACAATAGGCCACCAATGATACTGAAGTTACGAGTATAC XNT[[[YTQXUVKHX[]ZMOZ]SV]X]\Y[\ZVRTZ]][Y]]VNQUWSU XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:37C11 -853_34_1182 141 * 0 0 * * 0 0 GGGAACATTATACGGCTTTCGCCCCCTAGACCGCACTGTGTTGGGCCGTT >>>:9<<>><;58987;::9718859:2;75'3%(720&14%6(,51-&& -853_34_1182 77 * 0 0 * * 0 0 GTTAAGGGTGTTAGGGAACCCTANAAAGCCCGGGTTTCGTGGGGGCGGGC ;7;5*982;:/;,46::69<4<(!4295.6144&::<4*.-+%$#.#,(# -853_34_1358 117 chrM 7792 0 * = 7792 0 CGCCTCGAATATTGCCCTCAGATCAANACTGTTGACCCTCGGGCCAGGCC 9/8<9;6:<8=,>=<<;=<<9:><>:!9;@=:>?<=>><=>>?<=;??<< -853_34_1358 153 chrM 7792 37 49M = 7792 0 CTCCCTAGTGATATGCCACAGTTGGATACATCAACATGATTTATTAATA MV]YU]YXXTZ]ZY\]]]][]]]]]]]]][[]]][WX][Z]]]]]][[] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_35_596 133 chrM 477 0 * = 477 0 GGCTCCTATTTTATTACGTGTCCTTCTCAAACTGACAGCGCAATGCTAAG >978>8=9;>;:2>;;85=3;::=;::7:8:68)<5;859>?<>:<6<58 -853_35_596 73 chrM 477 25 49M = 477 0 CGATAGCTAAGACCCAAACTGGAATTAGATACCCCACTATGCTTAGCCC !SSNPYYYUQPS\VSSRPPZ[Z!!NXX\VXLL]]XUMKXYRTRKLV\Y! XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:22G26 -853_35_669 141 * 0 0 * * 0 0 TTCTTATAAAACCGCTTACCCCCTAGGTCCGAACATCTTGCAGGGTCTTG ,)&#<&38':&)-2/*4-'*+,5:0(3(+.+&,)9,&%1%*'(+.+-&&' -853_35_669 77 * 0 0 * * 0 0 TTGTGCTGTCACGGCAAGGCGGGNGAGTTGGTGCGGCTACTCTCATCTGG #4(,,&5,'-2(&5'10&)&-&3!,)+.*9&););:,8)7&3<&,/1:)& -853_365_1447 117 chrM 5643 0 * = 5643 0 ACCATTGGATTAGGCAGCCGTGGGGCATACTCATACGGTCTGACAACCAT $###$#$#(##&$&#8$277:3079<60;993;8;5+97=7)9:;:(7<6 -853_365_1447 153 chrM 5643 37 49M = 5643 0 TCCCCGAATAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTA NJUSYMK[RT[XXTY\ZZOT]]]XX\Z[XY]]]]]]]]]]]]]]]\]][ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:0C48 -853_365_890 141 * 0 0 * * 0 0 AGAAGTCCGGGCGTAGTGTATCCGAGGGGCAAAAACTCTAACAACGGACT =9?=>7:9;A=9==??:<8?<=9@6<:>>8<?=>:=6:=<?8;<398:8) -853_365_890 77 * 0 0 * * 0 0 TGTGGGGGGGGAAGGGCGTCCGGCTAACGTCTCGGCGGGTGCGGGGGGGG <:7:=<;;;<9==><<;9<>:;>>;:;7<;<68(-#6+1&5,(4'2'.*2 -853_368_1718 133 chrM 1149 0 * = 1149 0 CTCCCCTCTCAGCTTGATTCCAAACGCCGGGATCTAAGGGTAATGTTCCG ;;A>A>?A;@@<><9A;6:?A:=1><<A@6=5515A<>8397:@1<6<3: -853_368_1718 73 chrM 1149 37 49M = 1149 0 CCTTAGTCACTTAACTAAAACATTCACCAAACCATTAAAGTATAGGAGA (]Z\]SR]]]\Z]]]]]]]]]]]]]]][]]]]]]]V]]]WW]]]SO[[X XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_369_74 141 * 0 0 * * 0 0 GGGTTCAAGCATGGGAAGTGGACCACAGCTCCCGACGGTCCACACCATCA =9756::884:54:791:47358965758589965&:94,&969;(5143 -853_369_74 77 * 0 0 * * 0 0 AGCCACGGATCAGAGGGGGAACGATGGTATAGGAAGGGATAAGTCGGGGA 7:9875:8:7<69;78.$2/9&)6%0-$5)96&879'$8,&(/))6*2&( -853_375_367 141 * 0 0 * * 0 0 GTTTTTTGGCGCGAGGTTTGCGCAGAAGGGCAAATTCCGGCAGCGTCGCG 5&')&(9<1,=?>:+,)6)&7,&(05/)1,',(0'&),&(6/7,,5,,44 -853_375_367 77 * 0 0 * * 0 0 CCGATTGTCTTTCTGAGCGCACCGAATCAAGGTATCTACTAGCATAGCAT '+);,18&&&''),2&))4,%/1&5.1+-'/,'-1()))&'*)'+)&/&) -853_375_856 137 chrM 883 37 49M = 883 0 AGAATAGAGAGCTTAATTGAATCAGGCCATGAAGCGCGCACACACCGCC ]]]]]]]]]]]Z]]]]]]]]]]]]]]]]]ZTV]]]]]]]\[]]]][]UQ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_375_856 69 chrM 883 0 * = 883 0 GTTTACTTGAGTACATCCTCAAGACTGTCTTATGCCGAGGCTGCCTTTGA 8<;;>??83=>;63:@:?9=@<=>8@:?5?>8=1?;98;9<>4&40&2(% -853_381_1334 181 chrM 556 0 * = 556 0 CCCCATCATACCACATAACACCACCAAGGCTCAAGGTGTCTTAATACCCA *%-#&2+,%&#2'%#,&%&.%7;';=?>%=<?>68:?@,;=?>%)4@>=@ -853_381_1334 89 chrM 556 37 49M = 556 0 ATTCGCCAGAGTACTACTAGCAACAGCCTAAAACTCAAAGGACTTGGCG WLNHN\]]]]]]]]]]]]]]OJ]]]]]]]]]]]]]]]]\]]Z]]]]]]' XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_381_1648 141 * 0 0 * * 0 0 AGAAACGATCACAAATAACCCAAGTCTCGCCAAGAGAGCTTGATCCGAGA 8:9:;<;::::;65&:178(:8:517:35$3385)958.$<578%7:7.) -853_381_1648 77 * 0 0 * * 0 0 TTGCAGACTAGTTTCCAGGTATATTTTTCAAAGCCTTATTTTCTTTTTTT 986+0<95:8;(>5<<)58?,4)8;<5&,9/),()35)-3&7(&832$&/ -853_383_1666 141 * 0 0 * * 0 0 AACCACTGAGTACGTAGGCGGTGCAACCGAACCCCGAGTATTACCTACTG 18$+&,#./,8#8('./99#4(58);.22,;,2,%6,%)(,.,*957)(' -853_383_1666 77 * 0 0 * * 0 0 AGCGTCTTACAGACCCAACTTGAAGCTTGCAGGAAGGGGCAAACCAAACA ,,('6:.6-&7,(=15&%&<&&1(/16',.(1&&8($$&&+&)76,5815 -853_383_962 181 chrM 865 0 * = 865 0 GGCCAATTATTGCAATGGTATGTTGTGGGGCTGGGGAGGTTGAATCTCTG 5*;3<8)659?)@>?:(99>:7==<?5?;A=:<2>A<;:==<=:>;9??@ -853_383_962 89 chrM 865 25 49M = 865 0 GGATTTAGTAGTAAATTAAGAATAGAGAGCTTAATTGAATCAGGCCATG O\]SGKS[[MJ]]Z10[]WHG]]WQT]]]HI\\YBDWTW]XU\]]VY]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:8C40 -853_389_1983 141 * 0 0 * * 0 0 TGGAGCTACACCATCCCCTTAGGAGGGGGAAAACGTGGGGTGACGTGGCG 715;6741498/6459/6448/6573'569<98845/6:9$),4%.560( -853_389_1983 77 * 0 0 * * 0 0 TACCGTCTTTCGATTGACCGGTCGGTCGGGGGCCGGGTGTCCGGTTCCGG ,&9):88.&'&&/.&4&%4(6#$4531,)66,.2-51#'2/&'5845,8. -853_390_660 137 chrM 1251 37 4M1D45M = 1251 0 GTGCTTAAAAGTACTAAACAGCAAAGCTTACCCCTTTTACCTTTTGCAT ]]]!%\W]]Z]]]]]YW][ZY]]]]WU\]]]\]Y\]]\V]23]]]HFRS XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:1 XG:i:1 MD:Z:0A3^A45 -853_390_660 69 chrM 1251 0 * = 1251 0 CTAAGGCAACGTATTGGTCGCCTTATGGTAATGGTACGTATAATTAGGCT >8A==;<<<>;;A98<;:<=>;9;=;;;;>;8<;;@5;:81=:894;:), -853_392_1916 141 * 0 0 * * 0 0 GATGCATATCCTGCAAAGCACCAAGGATGGAAATTTGCGCTAAATAAGCC @;@A?>A;?@A>@@<=9A>??=<;A@9>A?=:;?=>;?<<?;<962&6): -853_392_1916 77 * 0 0 * * 0 0 GCGCCGGGGTACAGTGCAAGCGCGAACGAGACGAATTTGGGGAGGGCACT :<=<<<>>;>9<28A;<:*;:=95889<.:8;>34;6)%+6;05&::1+1 -853_393_183 137 chrM 660 37 49M = 660 0 CCCACCATCCCTTGCTAATTCAGCCTATATACCGCCATCTTCAGCAAAC ]ZZ]\[]]]]]]]YZ][[[]]Y]]]]]]]]][]XV]]SGT\ULSXY]Z[ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_393_183 69 chrM 660 0 * = 660 0 TCAGGATGGCCGTAATAATGGTGGCGTACACGCGCAAATTCCTTATGCGG =>;<<=*;4-;+9':>$427:&972<)71=;*793<1<1:;:7/9=)7/; -853_397_1746 181 chrM 9541 0 * = 9541 0 GTCGTATTCCTTCCTTGCAGATATGTCATACATCCCTGCAATCAGACGAG ,5,+2.4.7/><1:777)5;78/97?:0<582/9<880;8;98;:7987? -853_397_1746 89 chrM 9541 25 49M = 9541 0 CGCTACTCGTACTCATCGCATTCTGATTACCACAACTAAACATCTATGC DF8=*%8:ORJJNQOMD>LLOWUYMGGIQFNYV]SKPU]]VJGMFFVPJ XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:26C22 -853_398_593 141 * 0 0 * * 0 0 GACCCGTGGGCTCCACTGGTCAACGCCGTCCTATATGGCGGACTAGTCCT (,1&31,+//,&1?0,)(>91),,7(/0(1(3=/1>/)&83:5336:3-3 -853_398_593 77 * 0 0 * * 0 0 AATTTAACGTATGCGGTTTTCTCTTCTCAATCCTCACACCGGTAAGAACA (=714-?,:<,91)717878<7/9396=51,<<=,)/;8=5,:/8;7813 -853_423_1430 133 chrM 8093 0 * = 8093 0 CGGAGAACCCACCCGAGAGACATAGGGGCGAGATTCACCTGCTTTTTAGG >>5:<8<A<=:<=@<=5?:/=:8;7:=9<<87:<897:7891.=%;8/7; -853_423_1430 73 chrM 8093 37 49M = 8093 0 CTCAATCCAACAATGGCTAGTCCAACTTACATCAAAACAAATAATAGCT W]]]]]]]]]]]]]]]]]][\]]]]]]]]\Z]]]YW]]TKTO>=D?KXK XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:6T42 -853_424_115 141 * 0 0 * * 0 0 TGTTGACTAGCCGCAAGCTCCCTGGACAGAGGCAGTCTAAGCGGTCCGTT ;<<8<<>=9<=?:8:?:?8:A>;3;<=<8;<9?69>99;:;;77;:9/,; -853_424_115 77 * 0 0 * * 0 0 CCCGATACAGACCATGCGAATCGAGACGGGCTGTCTCCAGTCCAACCCGG 6>8:8<;>7?;;<,7>>;;8:<=16;:789549$%&6)'040$('%0''2 -853_439_1980 141 * 0 0 * * 0 0 TGGAGCGATTTAGACCGTATTTTAGTCTCCGCCGATAATAAGAGCAATCT 952;8:98452>4=9;:0=3)6/76-666=777+<4::&86.;'7;:+5' -853_439_1980 77 * 0 0 * * 0 0 CAATCAGTTTATGCAAGCTAAATCCCCGAGACTGAGAACGAAACTCTCGG ,<='0/71(/:.;2<<9:5>7?2<8<=9987;51?*=>:(7;<,()&:6/ -853_440_379 117 chrM 8797 0 * = 8797 0 TCCGTCGCGTCTCACGCCTCAGGAGCACTTTGGGACGCCGCTATTTGTGT 6<=8:7:366/<70;+5:9;7:;:<:899=89<8;:79><3:<8:5<8=9 -853_440_379 153 chrM 8797 37 49M = 8797 0 CCTTACCATATATCAATGATGGCGAGACATCATCCGAGAAAGCACATTC OOR\KGMS]SU]]ZY]YOQJQ]]\]]]]]]]]]\]]]]]]]]]]W[][X XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:21A27 -853_443_1353 141 * 0 0 * * 0 0 GACGGAGGAGGGTAGTGCGGGGGGCGGGCGTGGGGCTTGAGAACGGCTCA 95:19@9979:<4,82>02:3;5.46:65:5<95<7:;7;:>9*;:<:82 -853_443_1353 77 * 0 0 * * 0 0 AGCCGAAACGATTGTCGTGTAAAGGCGTCCGCCGGGTCAGATCGAAACCG 921/5>7972<889;:;9:3?>5;/95<509=7.878/4/;:.28;9/3( -853_443_704 181 chrM 8985 0 * = 8985 0 TGTTCCTGTAGTATATCACTTTTTTGCCCAGGACGGTGAGACACATGAAG 7:/><:;,?:::>;>=;:>>><9@>;>8A;=?@A@=?=?<=>AA>>AA<@ -853_443_704 89 chrM 8985 37 49M = 8985 0 GCTGCTGACCACCCACAGGTATCCACCCCTTAAACCCCCTAGAAGTCCC K[ZHA@@A!.]]\]][]]]]]]]]]]XW]]]YT\]]ZX]]]]]]]]XY] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 -853_458_262 141 * 0 0 * * 0 0 AAGTCATCTTTCCGGGGAACCCCCCGGACCTTCCTTCTCCCAACCAAAAA >>;>=;<4><=>5;=;>2=>:>1;<><'::8>(=:?5%<=9;29<<=-0< -853_458_262 77 * 0 0 * * 0 0 TTACCTGCCTCTCCCTCGCCACTTGGATCGCCGGCTGACTCTACATTACA <;:=7:;;<8<=8;=<</<9?<9::<<:;9;;84:91#2&%,-($&&%*% -853_458_615 137 chrM 5320 37 49M = 5320 0 TCTTTAGATTTACAGTCTAATGCTTACTCAGCCATCTTACCTATGTTCA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\\]]Z]]]YY]]Y][V XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_458_615 69 chrM 5320 0 * = 5320 0 TTGCTGTTACTGAAGTCATACCCTAAAGCTTAGTATGCGCGTGTGTCAAG 97899::;:<<:;;;<::9;;77:;;/8:=<6;86;34;;8695;:+5:< -853_47_795 133 chrM 649 0 * = 649 0 CGGAAGGAGCGAATACTGAACCAACACAGGTTAACTAGGAAGAAAGTGGA >?@;;?>=A@A9:>;:>=<;=>::88<;=8=<:95>08=5.(364,)1,) -853_47_795 73 chrM 649 25 49M = 649 0 CCCCGATAAACCCCACCATCCCTTGCTAATTCAGCCTATATACCGCCAT ]]\]]]]]X]]YY]]KL]]]NO][X07]]VIRZ]Z"0]]]]RKR]KF\V XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 -853_47_831 141 * 0 0 * * 0 0 TAAAATCTCGGATGGTTGCCTTGAACAAAAAGACAGCCCCGTCAAGGGAA 5A,&5,))%(()&,13(.9<2++8,>99*(%184,=/&5+)6/)0.&)64 -853_47_831 77 * 0 0 * * 0 0 TGGATACACGTAACAGAGGACCGGGCAGACTACTCGGGGGCCGTCGGTGG .)/'0(,&#*#'#)#(#(#*(#'%%1.3#$-2%$&/#$(#'%'%(##%+, -853_489_1193 117 chrM 5045 0 * = 5045 0 CCGGGTATAATCCATAATGGCGTTTTCCACTCTGCAAATACAGTAAACAG 85@06;<>)=55>29<;?)=>:<:===>5=>=>,><=?2=?<>>>=>=<= -853_489_1193 153 chrM 5045 25 49M = 5045 0 GCATACTAAGGACTGCAAGACTCTATCTCACATCAATTGAACGCAAATC RMO]UZ]]]]]\\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:16G32 -853_489_665 141 * 0 0 * * 0 0 ACGAGGAGATTAAAAAAAATGGGGTTAGATTAGATAAGATGAGAGGAGAG =>?><@=A<@@<?>>=:=:=;24&&)00+&$(4:%%'(4-#+16#-'1.$ -853_489_665 77 * 0 0 * * 0 0 GAAGAACGAGGTTTAAGATAGCGAAACCGCGACACGGACGGTAGAGTGGC ?::=-->4%&22=8)3<1;7$//6#)=(:%%<2(*,4,;7'92832:$9) -853_557_1176 117 chrM 12324 0 * = 12324 0 GTGGACGGTGACGGTAACCCCCAGCCTTCCCAGGAAGCATATAGTGGGGG ;,<<=95:3==7<9@?9;9><<?:=A5@>=?6;<@=8><>:9:>79>@;> -853_557_1176 153 chrM 12324 37 49M = 12324 0 GCTTCATCATAGCCATAGCCTGATTCCTATTCAACACCAACACATGAGA []]]]]]]]]]]][[]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:10G38 -853_557_600 141 * 0 0 * * 0 0 ACACGCCGCAAGTCACAACGAGAAGGCTAGGGACAAAAGACGGAGCAAAG 7-0'%()1&'&/65'1'/+,.*&&*17165:+0#-+'.&+''$-,$-&'# -853_557_600 77 * 0 0 * * 0 0 TTGCCCCAAGATCGATCTTGTCCCGAAAACGTAAAGGGCCCGGTGCGAGA &+&))(51(,1&&:'7:&)=.8),/5034&.&31&0.&-/$3'&)&1&1, -853_558_1569 141 * 0 0 * * 0 0 TGGGGGGAATGCGTAAAGGAGGACCATGCCTCTGAGAAACACGCGCGAGA &&(?(?(8><;;;;<=;<7<;;8<:9;<88=<:<=::?8,6658/:,181 -853_558_1569 77 * 0 0 * * 0 0 GCTACACACCCCCGAGCGGCCGGTGTAGTCGACGTGCGGAACGGTCGTAA (?16:=57:=779:995@=9?<?:>3<??=?339@?@;<@3?:8>><53? -853_558_962 181 chrM 2448 0 * = 2448 0 CTCCCCCCTCGGGGCCCTAACCTGCCGACCTCGCCCTATCGTTTACTCCT .)(0908:,&#6986$979'%<6.*772<<;>@=?=>;<>?=>>>==>?> -853_558_962 89 chrM 2448 37 49M = 2448 0 ATGTTGGATCAAGACATCCTAATGGTGCAACCGCTATTAAGGGTTCGTT \UV]]]]TS]]]XZ]]XFN]]]\]]]]]]]]]]]]]]\]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_563_1263 133 chrM 8090 0 * = 8090 0 CTCGTACTGCGTAATATACAACCCCACGTCCGTTTGGCTTAACAGGAGCT @A>=?A@><?=A<==@A==?>>=;==>:1<<:?=<=<;=:?=<&:3<3): -853_563_1263 73 chrM 8090 37 49M = 8090 0 AATCTCAATCCAACAATGGCTAGTCCAACTTACATCAAAACAAATAATA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\X\][VYZSFM\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:9T39 -853_563_1776 141 * 0 0 * * 0 0 GGTCCTGCGGGCGGTTCCCAATTTCATCTGCCCGAACATAATAGGTAACC @=?=A>A@A>A?>@>>A@>A>?>1@>>>5@?@@8>?@&8><>97(:9:5) -853_563_1776 77 * 0 0 * * 0 0 ACCTTGGACCCCTCCGGCAGCATCGGACAAGACCGCTGGGTGGTCTAGGG =A><?@A:AAA@<>AA9@==?96AA=69;<>8A3>;86&?:;6&<>7??< -853_56_1228 181 chrM 8643 0 * = 8643 0 CCCTGCGCCGAGCCGTCCCCCCCCCGACTGAACTCAGCAGATACTCGCAG (-5&(2)5(/&-:%&4&9%&-.1266:=:?<<?>>;??<:==<:?=?>;@ -853_56_1228 89 chrM 8643 37 49M = 8643 0 TAATGACCCACCAAACCCACGCCTACCACATAGTAAACCCCAGCCCATG Y[]MKVY]]]]QT]]]YY]]]]Y]PN]]]]X]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:22T26 -853_56_1324 141 * 0 0 * * 0 0 ACCATGTATGGAAAAAAAGAGTAGAGGAGGGAAACAATGAAAAACGGACC /6+58//.61366638/)&988).5::15578427=88&0:>;59:(6;< -853_56_1324 77 * 0 0 * * 0 0 GGGCTTTAACGCGTCGGCACGAGGTAAGTGGAGTGGCGATGGCACGATTC 5,(,)5+)57+94*,*3-#*4,2&2$2'(,2)-)22/)$23/1*)24'%$ -853_584_1986 141 * 0 0 * * 0 0 ATGCCACCGCCTTACTATCTTTTTTGCTGACATCACGCCGTCTCTTGGTG ,#$)*)(($3,))$&#,(&#*))&$##&#(%+&'+$,,$2$&(#&#+,#$ -853_584_1986 77 * 0 0 * * 0 0 ATAGCTTAACCGAATGCTTTAATAAATTTGCTGTTCTGAGGGCGTTACAC ,:)155*-9#7,;,)'232.:1(4,7#$3#97$%$,''+$,2(##,#%#( -853_585_1153 141 * 0 0 * * 0 0 AAGACCAACGTAAATTATCCATTCGTACGATGCCCTGGGCATTGCATTCC <>689<?9>59781>9956245:44?6,16=466;77615206+=12$#, -853_585_1153 77 * 0 0 * * 0 0 GCTCACGCCAGTACCCCAAAGGTCAAGCCTTTCAGATTCCGGCCTGGTTC 87?><89<==9>868=95:49<>7;:96<,:=;-1::::64;58/9;;)1 -853_585_542 129 chrM 580 37 49M = 1916 1336 AGCCTAAAACTCAAAGGACTTGGCGGTGCTTTACATCCCTCTAGAGGAG #(]]]]]]]]]]]]]]]]]]]]]]]]Y]]]]]]]]]]VV]]]Z]]YR\] XT:A:U CM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 -853_585_542 65 chrM 1916 37 49M = 580 -1336 AAAAGGAACTCGGCAAACACAAACCCCGCCTGTTTACCAAAAACATCAC ]]]]][]]][]]]]]]]]]]]]]]]]]YS[]]]\]]\MS]]]\TW\YTO XT:A:U CM:i:0 SM:i:37 AM:i:37 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_611_1451 137 chrM 593 25 49M = 593 0 AAGGACTTGGCGGTGCTTTACATCCCTCTAGAGGAGCCTGTTCCGTAAT !S]]][TGDQ]WKRZWVRPLPYX[ZWTENZWXEFUX]PFRY[UUVS\QD XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:44A4 -853_611_1451 69 chrM 593 0 * = 593 0 TAATAGCAGCATTCAACTTTCCTGACCTTTACTACTACCGAACCTATGGG 28#'%)5/,)46%-#28,4,/;00,'6,/'-;4%(#9,###:++'.9*## -853_611_981 141 * 0 0 * * 0 0 GCACGGCAAGCGGTACGGGATACGTGAGGCGCGGTAAGCAAACCCGATCC ;=9===@::A><;<6><=;:@8;;==8<?:<<==<<3=<&>55=9;38=; -853_611_981 77 * 0 0 * * 0 0 GACCTGAGCAGCAGTCGCCTGGAGCAAGCCGGCCGATATAAATCGATGCT 85275/655287&4<7<5889<176837797:835.6&44427/'48$71 -853_626_1431 141 * 0 0 * * 0 0 ATGTAGGTCCCTGACGGCCCCACGGAGGAACCTTAGCTAGGCCAACAGAA >5<:5897:<;4==:;7>;9;<979>89?<7;;:<9:6<49;8644.1+$ -853_626_1431 77 * 0 0 * * 0 0 TGGGTCAATGCCCTATATGACATTAGGTTCGCGGTCGGTAACGAACAGCA 11-/8<:967:;959<<:5:<21781187057585;;*6-5$%8,2&%9$ -853_626_841 181 chrM 10675 0 * = 10675 0 CCCACCCGCCGTTCTAGGACGGCCACATTTTTATTAAGTCAGCCGGGATC ,)4,(85:>=?6@6>=7<=<>;>=<;?=A=<>>AA>@>A<>@?@A@?@AA -853_626_841 89 chrM 10675 25 49M = 10675 0 CCTCCCACTCTTAGTCGCACTAATCTCTATCCAAAACCTAACAGGCTCA R]]]XZ]]]]RLZ]]]]]]]\T]]]]]]]][]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:15T33 -853_628_1041 141 * 0 0 * * 0 0 CTATCGCTGATTTCACAGGAATCGGTCTTATAAGTTTGACCCCTTTTTTT <9)9<7839<:>/<<;>3'A9<36=<9$#9<8((<=8'&;97'7>;#2(8 -853_628_1041 77 * 0 0 * * 0 0 TGAGCAAGACCCGTAATCTACAACGACCAGCGGTTATGACAATGTATAGC 978:5,7295,/889'529//,,:55227($128:'9*83,4&29&,%57 -853_628_1976 117 chrM 620 0 * = 620 0 CGGACCCAGCAGTGTGAATCTGGGTAATCGCGCTGAGTGACAGCTCGGAA -&-,&&$9/84359:0;=1<7:::8?>.<9<:<:8A869=?=<;9=:<@< -853_628_1976 153 chrM 620 37 49M = 620 0 CTAGAGGAGCCTGTTCCGTAATCGATAAACCCCGATAAACCCCACCATC ON]][RQ]][W\]]]RR]]]YZ]\\]Z]]]]Z]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:17A31 -853_630_1363 137 chrM 2399 37 49M = 2399 0 CGCAATCCTATTCCAGAGTCCATATCGACAATTAGGGTTTACGACCTCG ]]]]]]]]]]]]]]]]]]]]]]]]]\]]]*,[]]IEZ]]]V[]]/1\SH XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 -853_630_1363 69 chrM 2399 0 * = 2399 0 ATAACAAAAGATTGAGGCCCATATTAGGTATTACCGCAAAAGGTGAGACG A@A=AAAA>A?@><?>@AAA8=:A@:?>A89:@>?=<?=@8A;;=59@8A -853_630_585 141 * 0 0 * * 0 0 GGCTGGACTATGCCGATGCGCGGGCACGGAGGGATCCGGGACCGGGAGGA &#$%#)%&#%#$$&(.##$##)-$&%%##&&.#&#$&-$#&'+'#$,,$& -853_630_585 77 * 0 0 * * 0 0 TAGTGTCTTGGTTCGTGTAGAAGTGCCTGGCTTAGCTAAATCGAATTGCT 15/,/(/))=&,)>,):(>:<=/,)/3>:,,49/(6)/;/',.11.+9'4 -853_648_1618 141 * 0 0 * * 0 0 TTGATCCTATGCGGACGATTCCCGCGCTTCTGCAGTTGAGTTTTTTAAAA 1/(,/3<)+7%'/,%'&1)'09';/5.)%,)1&*111&+&5&0$4%$581 -853_648_1618 77 * 0 0 * * 0 0 GAAAAGGGGCAGAATTTCGAGGGGAGTTAGGGCACAATCCCGCTAGCAGC &?,//&6(=77)):,)7.)933<)4%=:-8,831885//@3@:154',&3 -853_649_292 117 chrM 1156 0 * = 1156 0 GGAATTCCTGGAGAGGGGGGTTGGGGGGTTGAGAAAAAGGGGGGTTGGGT ::4572;408<;82=:;?::5;9=:<::98=<57:<;;>?;;=>:;;>9: -853_649_292 153 chrM 1156 37 49M = 1156 0 CACTTAACTAAAACATTCACCAAACCATTAAAGTATAGGAGATAGAAAT VV]XR]\]]Z]]]]]]]]]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_669_1548 141 * 0 0 * * 0 0 TCGGGGACCGCCGCGCTCTGGCAGAGAGCTCCAGGGCGGGTGCCGGCAGG 8<977;>:=:;=:9><:9<;795<65>2>;;99=9/<4<8113/78,((& -853_669_1548 77 * 0 0 * * 0 0 TTAGCTAGACATTAAACCATCCCTCTCATCTCCGGTTAACCCCGCCAGTT =;=<<=<<;=61:977/7;:96::<8.7<8;39:;976;;63)9;1+2:1 -853_669_616 181 chrM 8554 0 * = 8554 0 GCCGAACATGCATGCAGGTGGTCAACTGTTCCTGTAGTATATCACTTTTG 3;>8==8=;>:A?:>A<@9>A=?=@<9<?>>A?@@>@@A>@<@>>=><AA -853_669_616 89 chrM 8554 37 49M = 8554 0 TTCTACTAACTATCCTCGAATTCGCAGTAGCCATAATCCAAGCCTACGT YKKZ][YXT[\]]XZZYSM]]TNZ]WUXZ]]Z[]]]\TY]]][Z]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:31T17 -853_678_1204 141 * 0 0 * * 0 0 CTTAAGAGAAAACCTGCTAGCAAACAAAAATAGGGGGGGAACAGAACGAG 737,88957/39486691$92<:77<:1060:9),4&/)),)(').4+,' -853_678_1204 77 * 0 0 * * 0 0 GCAACCCGTACAAGTACAAGTACAAGTACAAGAACAAGAACAAGTAAAAA )=1=89;35:6:=:6;9A<5361?>1/6/=<'/;,A=&,:&>=/(5&A7& -853_678_1908 137 chrM 14105 25 49M = 14105 0 ATGTCATCATTATTCCCACGTGGAATCTAACCACGACTAATGACATGAA ]]][]]URX]]]WV]]UO\]]]ZXTRYNQX]]WVPNTOVXWUSRDLWEN XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:37C11 -853_678_1908 69 chrM 14105 0 * = 14105 0 TAATAGGTCGATAACGTTAGAGACGTAAGAGGAAAGTAACTGCCGTCATG 8@?:57<:::?;=><=:<?:@=?>9=@=97?;>=7<7?:66<:;:9;=83 -853_718_1061 133 chrM 1329 0 * = 1329 0 TGTCGAATATGCATTAAATAAGACTTGGCCGACTTGAAAAGTGTTGGCTT >A><@?@>@=>>;=<>@===<?=;>@A<=9:>;>=6==8<89:5>8>>;< -853_718_1061 73 chrM 1329 25 49M = 1329 0 AGAGAACTTAAGCTAAGCACCCCGAAACCAGACGAGCTACCTACGAACA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]\Z]]]]]\V\]]X\ZUSU]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:43T5 -853_719_183 141 * 0 0 * * 0 0 TAGAGAGCACTCCAGGGGAAGGGCCCAGAATCAAATAACAACTAATAGAA 99387)&%.,./'%682&.53/$)*65-440/#%$1$##.&$##2#,%$, -853_719_183 77 * 0 0 * * 0 0 ATTTTAGTTTACCTTCTTGAGTTCTACCTTAAACTTTGACCTCCCACCCC )/31.$%5'/#)',4#)'+$&7%%,&)#&&#%($$$$$%###%$'.##)' -853_775_1932 133 chrM 5645 0 * = 5645 0 GTTTACGCGTCCCATTTAGCTTCGCCTATTTTCCCGTGGAGTGTCACCCA ((>3,,(/7&(A,3:5('4&<<?3;/,;8=()7@=:(3556(9:>/1317 -853_775_1932 73 chrM 5645 37 49M = 5645 0 CCCGAATAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTACT ]QHY]Z[TDO]]]][[]]]][]]]]]]]]]]]]]]]YY]\]]ZOKZUW] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 -853_776_924 141 * 0 0 * * 0 0 GTGGGGTTAAATAGTAGAAGCGCGGACAGGTCCACGTGGAGCGCGAAGAA 88;9855?888?<.;=:54875'67+1#9661#474.5374&#1:2*%88 -853_776_924 77 * 0 0 * * 0 0 GGATTGTTACGTGCGCCCTATACTGGAACTGACCAGTCATTGACTGGAGA -212<+87/3582?/4731,<2(A:956/<3148*:7/28069392;:7/ -853_7_132 141 * 0 0 * * 0 0 NNGNNNGCNGNGAANGCNTANCNCNNTANNANNNGCCGNGAGNGNANGGN !!&!!!5#!)!)&+!2&!',!&!'!!1)!!1!!!4()$!/&,!'!'!0$! -853_7_132 77 * 0 0 * * 0 0 NNGGNGATGNNTGNGNNGGGNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG !!$(!,#&#!!&#!#!!#($!%$!#!!#&%#$(!#!#!!!!)(*+!!!,2 -853_7_141 141 * 0 0 * * 0 0 NNGNNNCTNCNCCGNGGNAANANANNAGNNGNNNGGGGNGAANGNGNGGN !!,!!!),!5!3)+!//!),!3!9!!&/!!+!!!**#)!.)(!(!(!43! -853_7_141 77 * 0 0 * * 0 0 NNGGNGCCGNNCANGNNGGCNAGNCNNGGACCGNANGNNNNAGGGNNNGG !!54!9518!!1&!5!!/31!)0!6!!)533/:!5!6!!!!)/<:!!!,7 -853_7_146 141 * 0 0 * * 0 0 NNCNNNCGNGNGCGNGANCCNGNCNNCGNNGNNNCTCCNGGTNCNTNGCN !!1!!!33!4!#15!7(!51!1!3!!.5!!5!!!/)/,!&-/!,!.!4,! -853_7_146 77 * 0 0 * * 0 0 NNCGNCACCNNGCNGNNGCTNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG !!10!/240!!0)!2!!#&'!'5!(!!(.-*$3!*!4!!!!+#(.!!!.( -853_7_269 141 * 0 0 * * 0 0 NNCNNNGCNGNGCGNAGNACNGNCNNGCNNTNNNGGCANCCTNGNTNTGN !!3!!!/.!+!*4,!42!)8!2!3!!62!!0!!!84;)!)7.!5!/!&%! -853_7_269 77 * 0 0 * * 0 0 NNCGNGGGGNNGGNGNNGGGNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG !!%&!('#%!!#*!#!!/##!&)!$!!'$',%,!%!2!!!!3,,*!!!,2 -853_7_321 141 * 0 0 * * 0 0 NNCNNNACNGNGAGNCANCCNANGNNGGNNGNNNATTGNCCCNGNANGGN !!$!!!&'!.!*##!6$!#1!+!#!!.+!!)!!!36(#!*5'!#!4!+(! -853_7_321 77 * 0 0 * * 0 0 NNGANGTGGNNGCNTNNGGGNCGNCNNCGAACGNTNANNNNGAAANNNGG !!+$!+21(!!*-!.!!)#1!8/!9!!6,3+%6!'!,!!!!2&6,!!!&2 -853_7_386 141 * 0 0 * * 0 0 NNGNNNTCNGNGCCNCCNTCNGNANNTCNNANNNGATANTCGNCNANGGN !!;!!!86!=!;9=!%5!58!<!2!!62!!&!!!&3:&!//8!*!7!5*! -853_7_386 77 * 0 0 * * 0 0 NNCGNGTAGNNGANGNNGTCNCGNANNGAAGTGNTNGNNNNAAAGNNNGG !!31!:7-%!!:,!-!!21,!77!)!!227:9:!2!;!!!!)',%!!!86 -853_7_405 141 * 0 0 * * 0 0 NNGNNNAANANAAGNTCNGTNANGNNTGNNTNNNCATGNCGANGNCNGGN !!=!!!;:!>!<8=!9<!:<!=!>!!;8!!;!!!;//1!&(&!/!'!*-! -853_7_405 77 * 0 0 * * 0 0 NNGCNAGGCNNTCNGNNAAANGTNGNNAGAAGGNANGNNNNATCTNNNCG !!<8!8;==!!;>!:!!7:7!7;!8!!7:>48=!2!=!!!!536*!!!;: -853_7_411 141 * 0 0 * * 0 0 NNCNNNAANCNAAGNAGNCGNCNGNNGGNNGNNNCAGANTCGNGNANGCN !!$!!!-#!#!*#+!,&!2*!#!#!!%'!!)!!!'$)$!/-#!#!'!,+! -853_7_411 77 * 0 0 * * 0 0 NNCANGAAANNTTNGNNAGGNAGNANNGAAGGGNGNANNNNAAAANNNAA !!,/!13;,!!&,!+!!2/%!*1!$!!%*)+#,!,!&!!!!'-'&!!!++ -853_7_445 141 * 0 0 * * 0 0 NNGNNNTTNANGTTNATNTCNANCNNCTNNGNNNAAGANGGGNGNGNGGN !!&!!!0%!#!,&'!,'!$$!&!,!!&)!!'!!!..*&!#,7!1!.!10! -853_7_445 77 * 0 0 * * 0 0 NNTANTGCANNACNCNNCGANCCNTNNTACGGGNCNGNNNNTGGGNNNGG !!&'!*+'#!!'%!&!!,%#!)%!(!!'##$&'!#!$!!!!$$#,!!!#$ -853_7_469 141 * 0 0 * * 0 0 NNCNNNCANTNTCTNTTNTTNANTNNAGNNCNNNGTTTNGTANGNTNTGN !!#!!!%%!$!))+!$,!*%!.!(!!.#!!#!!!#&##!##&!#!#!##! -853_7_469 77 * 0 0 * * 0 0 NNGGNACAGNNGANTNNGAANGCNANNAAGGAGNGNGNNNNAGATNNNAG !!##!*($&!!##!#!!%))!#1!%!!(,##$.!#!(!!!!##'#!!!&$ -853_7_53 141 * 0 0 * * 0 0 NNCNNNCGNTNAGTNGGNGGNGNGNNGGNNGNNNGGGGNGGGNGNGNGGN !!0!!!10!)!)0)!,-!##!%!%!!##!!'!!!%+&)!%$/!)!$!/(! -853_7_53 77 * 0 0 * * 0 0 NNAGNCCGANNGGNGNNGTANGGNTNNATTGCGNCNCNNNNGGGCNNNCG !!14!3.15!!47!4!!8+1!$9!(!!,..1)&!3!(!!!!1/9&!!!,3 -853_7_78 141 * 0 0 * * 0 0 NNGNNNAGNGNGTGNGGNCCNGNGNNCGNNCNNNGGGGNGGGNGNTNGGN !!#!!!5,!$!5&+!#8!)#!5!%!!3%!!'!!!$$8+!&)%!)!(!*#! -853_7_78 77 * 0 0 * * 0 0 NNCTNGGGGNNGGNGNNGGGNGGNGNNGGGGCGNGNGNNNNGGGGNNNGG !!##!###$!!##!&!!#$&!$&!&!!%&)'#'!$!#!!!!&)*(!!!&* -853_7_88 141 * 0 0 * * 0 0 NNTNNNGGNGNATGNCTNGGNGNCNNGTNNANNNGCTANCTGNCNGNTAN !!1!!!42!5!,25!24!77!4!3!!81!!,!!!5147!)/6!,!,!1&! -853_7_88 77 * 0 0 * * 0 0 NNGTNGGGCNNCTNGNNATTNTANCNNACAGGANCNGNNNNGGGGNNNGG !!61!5551!!13!4!!.,)!/,!3!!.)/17+!&!5!!!!-'0.!!!,5 -853_815_1179 141 * 0 0 * * 0 0 GCGGACTAGAGACGTCAACTAGGAGTAGCCGAGTTCAAAAGGGCAAAGGA <'#37,/*;1;7,;45-738,(/3,+.%21:/&93('(+7#*(,8(*(&/ -853_815_1179 77 * 0 0 * * 0 0 ATTCAATGGACTAAATCCGGGACCGAGGCGCGTCTGGCAGTCGACAGCTA 67827:>5597:=:<6<,224348025,71:879724,2(7/29)92222 -853_816_193 137 chrM 2616 37 49M = 2616 0 AGAAGCGCCCTCAAACTAATAGATGACATAATCTAAATCTAACTAATTT ]]]]]\]]]]]]]]]]]]]]]\\\]]Y]]]]]VY][X]]Z[NL[WMQT[ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_816_193 69 chrM 2616 0 * = 2616 0 GTGGTCTGAGTCAACCTGTAGATGTTTCGTGCACGATAACCCAGGGATTC ><><<;<@;9;>;=::>:==8<::=8>7<<:</=<8=@<?878>?<6?<6 -853_827_2017 181 chrM 5150 0 * = 5150 0 ATTTCGAATCGCACGCGCACACAGTTCGAGGATCCTCTTAAACGTTAGCG ++6=<9;<8<7935;5480<::;<;::8;8;7994=<8?:=;8;>::8?< -853_827_2017 89 chrM 5150 37 49M = 5150 0 TTTTAGTTAACAGCTAAATACCCTAATCAACTGGCTTCAATCTACTTCT FCHRRSLJSMOW\\Y[]YZOIDI][\]]]]\Y[Z\]ZUUZ[Y\]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_828_1138 141 * 0 0 * * 0 0 GCACTATCGTGTGGCCCGATGTCCGGTCCTCCTCTCGGTTTTGGACCTGT &+&&)')$#,&,#&&')&%&'/&$$'#####&##%$$###&&##&$$### -853_828_1138 77 * 0 0 * * 0 0 TTAAAAGTCATGAGCGTACAACACGTGCCATCTGTCCTTAATACCTATCA &)&$&)&&&&)&&%&&&&)&'&&&%&%&&%%&#&&&&&&&&&&%$&&&#& -853_82_2023 181 chrM 1195 0 * = 1195 0 CTAGCTCTGTACGCGGCTTATGCGTCTCTTAGGCTCCCTAATTCTAATAC 75:5956654=71?9858;96;9>;;:?8:<=8=45762<?57<<>79;9 -853_82_2023 89 chrM 1195 37 49M = 1195 0 AGATAGAAATTTTAACTTGGCGCTATAGAGAAAGTACCGTAAGGGAACG XX]]VQXWSNT]]]WV]\Y]]]]]]]]]]]]W\]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_83_197 141 * 0 0 * * 0 0 CCGTCTCCCGCGCCGCAGAGACACTACTTCCTCGCCGCGGTGCGCCGGGC /9;58179583997;5591<26;797=55:995$)&$'#-$(&&'(*(%& -853_83_197 77 * 0 0 * * 0 0 GGCAGATGATATGGACTGAGTGGGGGGGGAGGGGGGGGGGGGGGGGGGGG 8;95;6:96698;6;89:3=%(-*$&(+$&#%.''+(.-%-/5.*.*4/5 -853_843_1357 133 chrM 13593 0 * = 13593 0 GTTTGCTAGAGTCGTATGTAGTCGTCGTTTCACGTGACCGGTCTACACCC >:AA8=?:??:?@>@?><>8<;<:>31=>:8(=8<74=,9;?5;724>48 -853_843_1357 73 chrM 13593 25 49M = 13593 0 TCCACGAGTAACCTCTAAAATTACCAAGACCCCAACAAGCAACGACCAA ]]]]]]]]]]]]]]]]]]]]]\]]]]]VU]]]XJQ]]\UYYXTOX]ZQN XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:45T3 -853_843_799 133 chrM 16042 0 * = 16042 0 CTACACCTGCGTATCGCCTCGAAAATGCTGTCACCTTAAGCACGTTTAGG @>>=A:AA=A9A>@4:=>:8:2?:@23;>;;9=1<=;=933'58>;9>:6 -853_843_799 73 chrM 16042 37 49M = 16042 0 GAAGCTGGACTTAAATTGAACGTTATTACTCCGCATCAGCAACCATAAG ]]]]]]]]]]]][\]]]VT]]]YZ]]]QR]]]]W]]]UV]]]OL]]TQT XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:27C21 -853_844_231 141 * 0 0 * * 0 0 GGGGGACAGGTGGAACTGGTAGACGGTACAAGGGAGAGCGCAGGGGATCA 4289*5)*(/(/+;=$/806&&*76&,.19&4754&2/9/92>3;)11:, -853_844_231 77 * 0 0 * * 0 0 TTAATTCTAGGTTTAAATGGAATTAAGATCCTGAGCCGGCCAAACCCGGG &&8151/>,/,/8,(?<=&('(?/;8&8))<?11=39%718,$,./9*89 -853_844_634 141 * 0 0 * * 0 0 TCGAAAGCTCAACATCATCCGGCAGGGCGTAAAACTGGTCGCCCATTGAA >A;887A=2@9>;.;<67,;?::2:<;9#?<97/7<944:;):&*>90,6 -853_844_634 77 * 0 0 * * 0 0 TCTATCCACCGAAGTCAGTGTCTGAAGTCTTAGACACGTTCGAAACCAAT 7#56860817:11777)66,9&>7%;188/87,9&5608#9.764682%0 -853_877_1974 141 * 0 0 * * 0 0 GCGTCCGCAAGGCGCGGAGCCTGAGAAAATTAGCCCGCGAGAATGACTAT 76187559,719324834789;;285501;<<65:<<:9;;99=<830+: -853_877_1974 77 * 0 0 * * 0 0 TTGCCGTGAGGCGATTGTACCAAGATAAAAACAAAATAACCTAAAAACAA *,*-4'#)74,',)(*##,#&#+#%##&#$'##%##)(#$%##$#(##'# -853_878_1093 137 chrM 2417 37 49M = 2417 0 TCCATATCGACAATTAGGGTTTACGACCTCGATGTTGGATCAAGACATC OZ]]]Z]]YWI8J]]TJX]]N;K]]RAN]N;3@XZH9=NYH>T]UE!/X XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_878_1093 69 chrM 2417 0 * = 2417 0 GGTTGGAGCGGGATAGCAAATGAGGATCCTGTCACAATCTCCCACTCCGA @@/&3,(,,5533/161?@57/1,3>3<<8>53)65=1)735,1A<;:8@ -853_887_1933 181 chrM 11695 0 * = 11695 0 GGCGCCAAGCCGTCCGACGACACTTGCGATGTGGGGACAGAGGGTGTGAA ))%,&))3#=4:=;<=:>8<:9=;?@<=<<>?A==;9<:><<<7@>>?4< -853_887_1933 89 chrM 11695 25 49M = 11695 0 CAAACACGGCTCTCTCAAACTTTTAAAGGATAGGAGCTATCCGTTGGTC W\]]UJN][WZ\]]]OR]]]]]]]]]]]]]W[]]]TQZ[]JCQV\]]Y] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:6T42 -853_888_1016 141 * 0 0 * * 0 0 TGAAGACCGGGGGTCCTATGATCAACCCAACCATGAATTGTCACAGACCG &.+/)(-#'('&5#405$2220&,/03$0+)9$(#)4%%&&-,#&#),'# -853_888_1016 77 * 0 0 * * 0 0 TACGGGGGAAGGGCATCCCGACGTTCAGGGCTCGGCACCACCCCAGAGGA &(,,//6)))'<&/9&')/,,)(,&,&&9&<)/'3,),/&&)7:)(/),/ -853_943_830 141 * 0 0 * * 0 0 AACCTACTATGCTCATGCTGGAGAAGAAAAACACCGGTGCCATCAAACCA (>,5+''#1):,#>#10#%2:%$3&(4#.#..#*39(#':6,$'%))##4 -853_943_830 77 * 0 0 * * 0 0 TATTTTTGGAGTACCCTCCTGTACCAATAAACGTGGCCCCGCCGGGTGCA 61)5/6,34'20)%@#)#<%#$<)6+33&6&')4&0'0*(#'215.$'9/ -853_944_156 117 chrM 2054 0 * = 2054 0 TTCGATCAGGGTACGACTGTGGAATTTTGAGTACTGCGTCTGGGACATTG :<3><=.:><?19>99.;>;67:>==<=A=?;::>=8<??>>>A<<==;; -853_944_156 153 chrM 2054 25 49M = 2054 0 TCACTTGTTCTCTAAATAGGGACTTGTATGAATGGCCACACGAGGGTTT PV]]\XV[]]]X[]]]]]]]]XW]]]]]]]]]]]]]]]]]]]]]\]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:10C38 -853_946_129 181 chrM 7799 0 * = 7799 0 ACGCCACGCAGCGTAACGGCAAGCGCGGGCTCAGCACGAGACCTTGCGCC '&($%,4().)8%.4::%$'492/(88.$0:<,&,=7/.,7,$',:;<:8 -853_946_129 89 chrM 7799 37 49M = 7799 0 GTGATATGCCACAGTTGGATACATCAACATGATTTATTAATATCGTCTC ORU\]]\\V[]]]]]SS]]]]]]]]]\]]]]]]]]]]]]]\Z]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_946_1345 141 * 0 0 * * 0 0 TGGACCCGAATCCAAGCAGCCTGCGAACAAGGTAGGCGCCTGGTTAGCCA ?A<:<<A:=<:@6<><@:=>1@=<==<4:>:=<:>985::685;:2689; -853_946_1345 77 * 0 0 * * 0 0 GCGCCCGCCGTCGGGCTGAAGAGGTCGGCCCCGACCGCCGTCACCACCAG 8386936:688649:8;80:8#,#/,#1#-3#,#)4)2#42)&&12'2%/ -853_967_1892 141 * 0 0 * * 0 0 TCGGGCAGATGGCGTCAATATCCTAATCCCGCGGAGCGGGCAGTACGGAT :>;<<<@==;<<<>;2-#8>87'9><*%=@271=A6//=;)7,;=1).:5 -853_967_1892 77 * 0 0 * * 0 0 TATAATAGGTAAGTTCTGCTCGGAACATATTTTACCCCATTCTGCCTACC 8;64;9:878<=<9;:8>5:;9<>:;>769&;1://6&8;):1890:471 -853_968_1657 117 chrM 1985 0 * = 1985 0 CATAACAACATTCGGTAAGGTTTGATTAAAGTCAGCTCGTTGTTGGAAAA &%%)&')##$*,#$#$(#####,&#*%&$+##36<6<<8;99<9<88::; -853_968_1657 153 chrM 1985 37 49M = 1985 0 GAGGCACTGCCTGCCCAGTGACATCTGTTTAAACGGCCGCGGTATCCTA \TZ]Z]ZTY[[[]]]]Z\]]]]]]]]]]ZY]]]\Z]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 -853_968_485 141 * 0 0 * * 0 0 GAATGGAGGCGTGCATTTGAAAACGAGGCCAGGAAACTTCAGTACAGGAA =<:@<;:>@AA;>A9?8===<=>9<4;=7:2==9;94?@>.,;&;,=<&0 -853_968_485 77 * 0 0 * * 0 0 CCCGGTCGTCCGTTTGCGGTAAACGGCAACACAAAAACCCCAACCTTACC <=?;>==@<;>;<=><<?:<=?>=;?<>>=:><>=>7;>>7;8<::8:>< -853_968_835 117 chrM 7621 0 * = 7621 0 GTGTCCGCGCCGGAGCCGATTAAGGATATTTTCCCGTATCCATGACTTAT -986=;>48<==:<==<5<<9>::<=>>8<;>;?>><>=@:>:?<:<;A6 -853_968_835 153 chrM 7621 25 49M = 7621 0 TACTACGGCCAATGCTCAGAGATCTGCGGATCAAACCACAGCTTTATAC ZLCP"!ATX[NN]]]RR]]]Y[]]]\]]]]SS]]]YZ]Y]USVY]UU]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:8T40 -853_985_1608 141 * 0 0 * * 0 0 CCTCGAGTAAGGAAGAGAGAAGGGTACGATTATAATCCTCCCAAAACGAG @798;<9::<9;<:=?9>8;=9:97?68?=;1<:58:3/97%2)%-)#&# -853_985_1608 77 * 0 0 * * 0 0 TGTAAGCTATTGATTATACGCCCAGATGGACAATCGACAGGAAGGGAGGG <:99:7<::<:>,<<;=:<97?5/:/;:2::::58<921;>:::<=19=< -853_985_616 181 chrM 231 0 * = 231 0 GGTGGGTTGATATCGCGTCACTTAGGGTGGTAAGGTATGGTATCACAACA )$)($$#1&,&,#)#1&6=3;<=?;568=:;>@868@@@4>=@>>8A?@= -853_985_616 89 chrM 231 37 49M = 231 0 CCCCACGGGACACAGCAGTGATAAAAATTAAGCTATGAACGAAAGCTCG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:45T3 -853_991_1890 133 chrM 3733 0 * = 3733 0 AGGGGGGCAAGTTCAGGTTAATATATAAGTTTAGCCCAAAAATTACCTTC >,>)&,(->>.32(<@>1&=)/:/)>/&+((>,;)3;&1>=;,%63=7:9 -853_991_1890 73 chrM 3733 25 49M = 3733 0 ATGTCTGACAAAAGAGTTACTTTGATAGAGTAAAACATAGAGGCTCAAA ][]RO]]TDABJVW]UU]XURWUR]]]]]SO][IHW1(NUSD!!H\6$: XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 -853_992_1006 133 chrM 5367 0 * = 5367 0 CTGAATCAATGAGCCCACCACCACCCAAATGCTACCTACAGCAGACAGAG ###(#$#$0###1(###+,'##*##%#%##&##0####$&'#*%*'%#+# -853_992_1006 73 chrM 5367 37 49M = 5367 0 CATCAACCGCTGACTATTTTCAACTAACCACAAAGACATCGGCACTCTG ]]YT]]W\\U]YOT]]]]]]ZV][]]RT]][Z]][]][\ZUSYTRXQPY XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_992_1044 141 * 0 0 * * 0 0 ACAGAGGCCCACCTGCTCACTCGGACAGCCGCCCACGATGAGCACTGCTC :70.7143#46<257:>/,488938=96958:/75;29)715689/8(&+ -853_992_1044 77 * 0 0 * * 0 0 TGCGTCGTGCGCTACTCCGTATTCCCCGGTAGGGGAACCTCGTAGGACGG &/5-<)&(':4+<3838&&4&7'1-17&,/11044//$&,%8,%$4,-%# -853_993_143 141 * 0 0 * * 0 0 CGGGGCTCCAAGCTCCCCATCGAGAGACTGGGGTCCGTACACCAGACTCG ;759<65;<>97<::==@/8;6;6<:;85==1::;;:97<,9=937:79: -853_993_143 77 * 0 0 * * 0 0 CGGAACGAGGGAGTATAAGCATAGTCCCGCATCAATAGACCTATGGATTT <788::9:8:77>3,6;<768:?:39<=:611>9751:;8:55895(>;3 -853_996_1656 113 chrM 16037 25 49M = 1018 -15019 AAATTGAAGCTGGACTTAAATTGAACGTTATTACTCCGCATCAGCAACC YVP/1W[[\]YY\]\\]]]]ZT[]][[]]]]\]]]\Y[[ZWY\Y\]]]] XT:A:U CM:i:1 SM:i:25 AM:i:25 X0:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:32C16 -853_996_1656 177 chrM 1018 37 49M = 16037 15019 AGTATACCGGAAGGTGTACTTGGATAACCAAAGTGTAGCTTAAACAAAG ]]]\]\]UQ]]][]]][]]]]]XW]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:25 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 -853_996_488 141 * 0 0 * * 0 0 GCGTACCTGAACTTGGCCATTAAGAGCAGAGCCACCAGTGTCGCGGGGGC &-'*/*/8)$2(,.22&10&,))0/+,$38'(531,)2)'((%'6'(-1. -853_996_488 77 * 0 0 * * 0 0 TGCCCCGTCCACAAAACTCTAGACACACGCCGACCTTGGCAAAAGAAGAA .&'6,#*<(%'8('(,8.4'.1*9)81-0(*0$&2+-)5,0/,1*21#%* -853_997_740 141 * 0 0 * * 0 0 GTTATCGGGGGTTTTCGCAACATAGCTTTGGTAAGCATTTCTGCACCCCT (=('(,(,+<=3?<;::97<;::9<;8:4;<;9::=38:;?=;1<99087 -853_997_740 77 * 0 0 * * 0 0 GGGGGGAGATCGGTCGTCCTCGCGATTCGACGTAGGGAAGGAAACCGAAC 9&5;'.1')&(4&2&(,'))=&,,-.&+,&)(.,7/2)(4/-'95,4,<3 -@PG ID:bwa PN:bwa VN:0.5.9-r16 -@SQ SN:chrM LN:16660 Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. 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commit/galaxy-central: dannon: Fix chunk-serving logic for tabular files.
by Bitbucket 17 Aug '12

17 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/3840c86e34b7/ changeset: 3840c86e34b7 user: dannon date: 2012-08-17 19:55:37 summary: Fix chunk-serving logic for tabular files. affected #: 1 file diff -r 9e9e104ad5c93a2268bb00cfae09b57a31ece13c -r 3840c86e34b77bbd0d7c2da0c4ff3e5004dc0fe4 lib/galaxy/datatypes/tabular.py --- a/lib/galaxy/datatypes/tabular.py +++ b/lib/galaxy/datatypes/tabular.py @@ -264,10 +264,10 @@ def display_data(self, trans, dataset, preview=False, filename=None, to_ext=None, chunk=None): #TODO Prevent failure when displaying extremely long > 50kb lines. + if chunk: + return self.get_chunk(trans, dataset, chunk) if to_ext or not preview: return self._serve_raw(trans, dataset, to_ext) - if chunk: - return self.get_chunk(trans, dataset, chunk) else: column_names = 'null' if dataset.metadata.column_names: @@ -644,4 +644,5 @@ """ file_ext='fli' MetadataElement( name="columns", default=2, desc="Number of columns", readonly=True, visible=False ) - MetadataElement( name="column_types", default=['str', 'str'], param=metadata.ColumnTypesParameter, desc="Column types", readonly=True, visible=False, no_value=[] ) \ No newline at end of file + MetadataElement( name="column_types", default=['str', 'str'], param=metadata.ColumnTypesParameter, desc="Column types", readonly=True, visible=False, no_value=[] ) + Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: jgoecks: Add feature/attribute name indexing framework to converters. Provide full text indexing for GFF attributes.
by Bitbucket 16 Aug '12

16 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/9e9e104ad5c9/ changeset: 9e9e104ad5c9 user: jgoecks date: 2012-08-16 22:32:00 summary: Add feature/attribute name indexing framework to converters. Provide full text indexing for GFF attributes. affected #: 7 files diff -r 0bfd0f25956e3be0f04f68c9e05c1d07f2948f98 -r 9e9e104ad5c93a2268bb00cfae09b57a31ece13c datatypes_conf.xml.sample --- a/datatypes_conf.xml.sample +++ b/datatypes_conf.xml.sample @@ -4,6 +4,7 @@ <datatype extension="ab1" type="galaxy.datatypes.binary:Ab1" mimetype="application/octet-stream" display_in_upload="true"/><datatype extension="afg" type="galaxy.datatypes.assembly:Amos" display_in_upload="false"/><datatype extension="axt" type="galaxy.datatypes.sequence:Axt" display_in_upload="true"/> + <datatype extension="fli" type="galaxy.datatypes.tabular:FeatureLocationIndex" display_in_upload="false"/><datatype extension="bam" type="galaxy.datatypes.binary:Bam" mimetype="application/octet-stream" display_in_upload="true"><converter file="bam_to_bai.xml" target_datatype="bai"/><converter file="bam_to_summary_tree_converter.xml" target_datatype="summary_tree" depends_on="bai"/> @@ -79,6 +80,7 @@ <converter file="gff_to_bed_converter.xml" target_datatype="bed"/><converter file="gff_to_interval_index_converter.xml" target_datatype="interval_index"/><converter file="gff_to_summary_tree_converter.xml" target_datatype="summary_tree"/> + <converter file="gff_to_fli_converter.xml" target_datatype="fli"/><display file="ensembl/ensembl_gff.xml" inherit="True"/></datatype> diff -r 0bfd0f25956e3be0f04f68c9e05c1d07f2948f98 -r 9e9e104ad5c93a2268bb00cfae09b57a31ece13c lib/galaxy/datatypes/converters/gff_to_fli.py --- /dev/null +++ b/lib/galaxy/datatypes/converters/gff_to_fli.py @@ -0,0 +1,53 @@ +''' +Creates a feature location index for a given GFF file. +''' + +import sys +from galaxy import eggs +from galaxy.datatypes.util.gff_util import read_unordered_gtf, convert_gff_coords_to_bed + +# Process arguments. +in_fname = sys.argv[1] +out_fname = sys.argv[2] + +# Create dict of name-location pairings. +name_loc_dict = {} +for feature in read_unordered_gtf( open( in_fname, 'r' ) ): + for name in feature.attributes: + val = feature.attributes[ name ] + try: + float( val ) + continue + except: + convert_gff_coords_to_bed( feature ) + # Value is not a number, so it can be indexed. + if val not in name_loc_dict: + # Value is not in dictionary. + name_loc_dict[ val ] = { + 'contig': feature.chrom, + 'start': feature.start, + 'end': feature.end + } + else: + # Value already in dictionary, so update dictionary. + loc = name_loc_dict[ val ] + if feature.start < loc[ 'start' ]: + loc[ 'start' ] = feature.start + if feature.end > loc[ 'end' ]: + loc[ 'end' ] = feature.end + +# Print name, loc in sorted order. +out = open( out_fname, 'w' ) +max_len = 0 +entries = [] +for name in sorted( name_loc_dict.iterkeys() ): + loc = name_loc_dict[ name ] + entry = '%s\t%s' % ( name, '%s:%i-%i' % ( loc[ 'contig' ], loc[ 'start' ], loc[ 'end' ] ) ) + if len( entry ) > max_len: + max_len = len( entry ) + entries.append( entry ) + +out.write( str( max_len + 1 ).ljust( max_len ) + '\n' ) +for entry in entries: + out.write( entry.ljust( max_len ) + '\n' ) +out.close() \ No newline at end of file diff -r 0bfd0f25956e3be0f04f68c9e05c1d07f2948f98 -r 9e9e104ad5c93a2268bb00cfae09b57a31ece13c lib/galaxy/datatypes/converters/gff_to_fli_converter.xml --- /dev/null +++ b/lib/galaxy/datatypes/converters/gff_to_fli_converter.xml @@ -0,0 +1,13 @@ +<tool id="CONVERTER_gff_to_fli_0" name="Convert GFF to Feature Location Index"> +  +  + <command interpreter="python">gff_to_fli.py $input1 $output1</command> + <inputs> + <param format="gff" name="input1" type="data" label="Choose GFF file"/> + </inputs> + <outputs> + <data format="fli" name="output1"/> + </outputs> + <help> + </help> +</tool> diff -r 0bfd0f25956e3be0f04f68c9e05c1d07f2948f98 -r 9e9e104ad5c93a2268bb00cfae09b57a31ece13c lib/galaxy/datatypes/tabular.py --- a/lib/galaxy/datatypes/tabular.py +++ b/lib/galaxy/datatypes/tabular.py @@ -638,3 +638,10 @@ dataset.metadata.reads = reads.keys() +class FeatureLocationIndex( Tabular ): + """ + An index that stores feature locations in tabular format. + """ + file_ext='fli' + MetadataElement( name="columns", default=2, desc="Number of columns", readonly=True, visible=False ) + MetadataElement( name="column_types", default=['str', 'str'], param=metadata.ColumnTypesParameter, desc="Column types", readonly=True, visible=False, no_value=[] ) \ No newline at end of file diff -r 0bfd0f25956e3be0f04f68c9e05c1d07f2948f98 -r 9e9e104ad5c93a2268bb00cfae09b57a31ece13c lib/galaxy/visualization/tracks/data_providers.py --- a/lib/galaxy/visualization/tracks/data_providers.py +++ b/lib/galaxy/visualization/tracks/data_providers.py @@ -2,7 +2,7 @@ Data providers for tracks visualizations. """ -import sys +import os, sys from math import ceil, log import pkg_resources pkg_resources.require( "bx-python" ) @@ -59,6 +59,51 @@ def _chrom_naming_matches( chrom1, chrom2 ): return ( chrom1.startswith( 'chr' ) and chrom2.startswith( 'chr' ) ) or ( not chrom1.startswith( 'chr' ) and not chrom2.startswith( 'chr' ) ) + +class FeatureLocationIndexDataProvider( object ): + ''' + + ''' + + def __init__( self, converted_dataset ): + self.converted_dataset = converted_dataset + + def get_data( self, query ): + # Init. + textloc_file = open( self.converted_dataset.file_name, 'r' ) + line_len = int( textloc_file.readline() ) + file_len = os.path.getsize( self.converted_dataset.file_name ) + + # Find query in file using binary search. + low = 0 + high = file_len / line_len + while low < high: + mid = ( low + high ) // 2 + position = mid * line_len + textloc_file.seek( position ) + + # Compare line with query and update low, high. + line = textloc_file.readline() + print '--', mid, line + if line < query: + low = mid + 1 + else: + high = mid + + position = low * line_len + + # At right point in file, generate hits. + result = [ ] + while True: + line = textloc_file.readline() + if not line.startswith( query ): + break + if line[ -1: ] == '\n': + line = line[ :-1 ] + result.append( line.split() ) + + textloc_file.close() + return result class TracksDataProvider( object ): """ Base class for tracks data providers. """ diff -r 0bfd0f25956e3be0f04f68c9e05c1d07f2948f98 -r 9e9e104ad5c93a2268bb00cfae09b57a31ece13c lib/galaxy/web/controllers/tracks.py --- a/lib/galaxy/web/controllers/tracks.py +++ b/lib/galaxy/web/controllers/tracks.py @@ -345,6 +345,20 @@ # Have data if we get here return { "status": messages.DATA, "valid_chroms": valid_chroms } + + @web.json + def feature_loc( self, trans, hda_ldda, dataset_id, query ): + """ + Returns features, locations in dataset that match query. Format is a + list of features; each feature is a list itself: [name, location] + """ + dataset = self.get_hda_or_ldda( trans, hda_ldda, dataset_id ) + converted_dataset = dataset.get_converted_dataset( trans, "fli" ) + data_provider = FeatureLocationIndexDataProvider( converted_dataset=converted_dataset ) + if data_provider: + return data_provider.get_data( query ) + else: + return 'None' @web.json def data( self, trans, hda_ldda, dataset_id, chrom, low, high, start_val=0, max_vals=None, **kwargs ): diff -r 0bfd0f25956e3be0f04f68c9e05c1d07f2948f98 -r 9e9e104ad5c93a2268bb00cfae09b57a31ece13c tools/filters/gff/sort_gtf.py --- a/tools/filters/gff/sort_gtf.py +++ b/tools/filters/gff/sort_gtf.py @@ -24,5 +24,6 @@ # Print feature. for interval in feature.intervals: out.write( "\t".join(interval.fields) ) +out.close() # TODO: print status information: how many lines processed and features found. \ No newline at end of file Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. 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commit/galaxy-central: inithello: Improved error handling for failed indexing jobs.
by Bitbucket 16 Aug '12

16 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/0bfd0f25956e/ changeset: 0bfd0f25956e user: inithello date: 2012-08-16 21:43:02 summary: Improved error handling for failed indexing jobs. affected #: 2 files diff -r 35d80be976914c49759e17068a2ba65b752eb3b1 -r 0bfd0f25956e3be0f04f68c9e05c1d07f2948f98 lib/galaxy/tools/genome_index/__init__.py --- a/lib/galaxy/tools/genome_index/__init__.py +++ b/lib/galaxy/tools/genome_index/__init__.py @@ -18,13 +18,16 @@ <tool id="__GENOME_INDEX__" name="Index Genome" version="0.1" tool_type="genome_index"><type class="GenomeIndexTool" module="galaxy.tools"/><action module="galaxy.tools.actions.index_genome" class="GenomeIndexToolAction"/> - <command>$__GENOME_INDEX_COMMAND__ $output_file $output_file.files_path $__app__.config.rsync_url "$__app__.config.tool_data_path"</command> + <command>$__GENOME_INDEX_COMMAND__ $output_file $output_file.files_path "$__app__.config.rsync_url" "$__app__.config.tool_data_path"</command><inputs><param name="__GENOME_INDEX_COMMAND__" type="hidden"/></inputs><outputs><data format="txt" name="output_file"/></outputs> + <stdio> + <exit_code range="1:" err_level="fatal" /> + </stdio></tool> """ @@ -64,6 +67,18 @@ if gitd: + fp = open( gitd.dataset.get_file_name(), 'r' ) + deferred = sa_session.query( model.DeferredJob ).filter_by( id=gitd.deferred_job_id ).first() + try: + logloc = json.load( fp ) + except ValueError: + deferred.state = app.model.DeferredJob.states.ERROR + sa_session.add( deferred ) + sa_session.flush() + log.debug( 'Indexing job failed, setting deferred job state to error.' ) + return False + finally: + fp.close() destination = None tdtman = ToolDataTableManager( app.config.tool_data_path ) xmltree = tdtman.load_from_config_file( app.config.tool_data_table_config_path, app.config.tool_data_path ) @@ -72,16 +87,12 @@ location = node.findall('file')[0].get('path') self.locations[table] = os.path.abspath( location ) locbase = os.path.abspath( os.path.split( self.locations['all_fasta'] )[0] ) - deferred = sa_session.query( model.DeferredJob ).filter_by( id=gitd.deferred_job_id ).first() params = deferred.params dbkey = params[ 'dbkey' ] basepath = os.path.join( os.path.abspath( app.config.genome_data_path ), dbkey ) intname = params[ 'intname' ] indexer = gitd.indexer workingdir = os.path.abspath( gitd.dataset.extra_files_path ) - fp = open( gitd.dataset.get_file_name(), 'r' ) - logloc = json.load( fp ) - fp.close() location = [] indexdata = gitd.dataset.extra_files_path if indexer == '2bit': diff -r 35d80be976914c49759e17068a2ba65b752eb3b1 -r 0bfd0f25956e3be0f04f68c9e05c1d07f2948f98 lib/galaxy/tools/genome_index/index_genome.py --- a/lib/galaxy/tools/genome_index/index_genome.py +++ b/lib/galaxy/tools/genome_index/index_genome.py @@ -40,15 +40,16 @@ self.genome = os.path.splitext( self.fafile )[0] with WithChDir( self.basedir ): if indexer not in self.indexers: - raise KeyError, 'The requested indexing function does not exist' + sys.stderr.write( 'The requested indexing function does not exist' ) + exit(127) else: with WithChDir( self.workingdir ): self._log( 'Running indexer %s.' % indexer ) result = getattr( self, self.indexers[ indexer ] )() if result in [ None, False ]: - self._log( 'Error running indexer %s, %s' % ( indexer, result ) ) + sys.stderr.write( 'Error running indexer %s, %s' % ( indexer, result ) ) self._flush_files() - return True + exit(1) else: self._log( self.locations ) self._log( 'Indexer %s completed successfully.' % indexer ) @@ -309,5 +310,7 @@ # Create archive. idxobj = ManagedIndexer( outfile, infile, working_dir, rsync_url, tooldata ) - idxobj.run_indexer( indexer ) - \ No newline at end of file + returncode = idxobj.run_indexer( indexer ) + if not returncode: + exit(1) + exit(0) \ No newline at end of file Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: jmchilton: Dynamic job runner bug fixes.
by Bitbucket 16 Aug '12

16 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/35d80be97691/ changeset: 35d80be97691 user: jmchilton date: 2012-08-16 17:58:01 summary: Dynamic job runner bug fixes. affected #: 2 files diff -r a42eae47ae877073a077527463beb32e251d7035 -r 35d80be976914c49759e17068a2ba65b752eb3b1 lib/galaxy/jobs/handler.py --- a/lib/galaxy/jobs/handler.py +++ b/lib/galaxy/jobs/handler.py @@ -360,7 +360,7 @@ def __init__( self, app ): self.app = app self.job_runners = {} - start_job_runners = ["local", "lwr", "dynamic"] + start_job_runners = ["local", "lwr"] if app.config.start_job_runners is not None: start_job_runners.extend( [ x.strip() for x in util.listify( app.config.start_job_runners ) ] ) if app.config.use_tasked_jobs: diff -r a42eae47ae877073a077527463beb32e251d7035 -r 35d80be976914c49759e17068a2ba65b752eb3b1 lib/galaxy/jobs/mapper.py --- a/lib/galaxy/jobs/mapper.py +++ b/lib/galaxy/jobs/mapper.py @@ -111,7 +111,7 @@ expand_function = self.__get_expand_function( expand_function_name ) return self.__invoke_expand_function( expand_function ) else: - raise Exception( "Unhandled dynamic job runner type specified - %s" % calculation_type ) + raise Exception( "Unhandled dynamic job runner type specified - %s" % expand_type ) def __cache_job_runner_url( self, params ): raw_job_runner_url = self.job_wrapper.tool.get_job_runner_url( params ) Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: 3 new changesets
by Bitbucket 15 Aug '12

15 Aug '12

3 new commits in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/7980b6390e48/ changeset: 7980b6390e48 user: afgane date: 2012-08-14 02:04:25 summary: Add the ability for Galaxy's ObjectStore to use OpenStack's SWIFT object store as the backend data storage affected #: 3 files diff -r be81990d148a81bc2896c3c543d2ff70ad9c3c67 -r 7980b6390e48db3bb0ae2f385d259a994e64b3f0 lib/galaxy/config.py --- a/lib/galaxy/config.py +++ b/lib/galaxy/config.py @@ -169,10 +169,14 @@ if self.nginx_upload_store: self.nginx_upload_store = os.path.abspath( self.nginx_upload_store ) self.object_store = kwargs.get( 'object_store', 'disk' ) - self.aws_access_key = kwargs.get( 'aws_access_key', None ) - self.aws_secret_key = kwargs.get( 'aws_secret_key', None ) - self.s3_bucket = kwargs.get( 's3_bucket', None) - self.use_reduced_redundancy = kwargs.get( 'use_reduced_redundancy', False ) + self.os_access_key = kwargs.get( 'os_access_key', None ) + self.os_secret_key = kwargs.get( 'os_secret_key', None ) + self.os_bucket_name = kwargs.get( 'os_bucket_name', None ) + self.os_host = kwargs.get( 'os_host', None ) + self.os_port = kwargs.get( 'os_port', None ) + self.os_is_secure = string_as_bool( kwargs.get( 'os_is_secure', True ) ) + self.os_conn_path = kwargs.get( 'os_conn_path', '/' ) + self.os_use_reduced_redundancy = kwargs.get( 'os_use_reduced_redundancy', False ) self.object_store_cache_size = float(kwargs.get( 'object_store_cache_size', -1 )) self.distributed_object_store_config_file = kwargs.get( 'distributed_object_store_config_file', None ) # Parse global_conf and save the parser diff -r be81990d148a81bc2896c3c543d2ff70ad9c3c67 -r 7980b6390e48db3bb0ae2f385d259a994e64b3f0 lib/galaxy/objectstore/__init__.py --- a/lib/galaxy/objectstore/__init__.py +++ b/lib/galaxy/objectstore/__init__.py @@ -25,6 +25,7 @@ if sys.version_info >= (2, 6): import multiprocessing from galaxy.objectstore.s3_multipart_upload import multipart_upload + import boto from boto.s3.key import Key from boto.s3.connection import S3Connection from boto.exception import S3ResponseError @@ -377,9 +378,9 @@ super(S3ObjectStore, self).__init__() self.config = config self.staging_path = self.config.file_path - self.s3_conn = S3Connection() - self.bucket = self._get_bucket(self.config.s3_bucket) - self.use_rr = self.config.use_reduced_redundancy + self.s3_conn = get_OS_connection(self.config) + self.bucket = self._get_bucket(self.config.os_bucket_name) + self.use_rr = self.config.os_use_reduced_redundancy self.cache_size = self.config.object_store_cache_size self.transfer_progress = 0 # Clean cache only if value is set in universe_wsgi.ini @@ -468,7 +469,7 @@ for i in range(5): try: bucket = self.s3_conn.get_bucket(bucket_name) - log.debug("Using S3 object store; got bucket '%s'" % bucket.name) + log.debug("Using cloud object store with bucket '%s'" % bucket.name) return bucket except S3ResponseError: log.debug("Could not get bucket '%s', attempt %s/5" % (bucket_name, i+1)) @@ -843,7 +844,6 @@ def get_store_usage_percent(self): return 0.0 - class DistributedObjectStore(ObjectStore): """ ObjectStore that defers to a list of backends, for getting objects the @@ -1009,14 +1009,14 @@ store = config.object_store if store == 'disk': return DiskObjectStore(config=config) - elif store == 's3': - os.environ['AWS_ACCESS_KEY_ID'] = config.aws_access_key - os.environ['AWS_SECRET_ACCESS_KEY'] = config.aws_secret_key + elif store == 's3' or store == 'swift': return S3ObjectStore(config=config) elif store == 'distributed': return DistributedObjectStore(config=config) elif store == 'hierarchical': return HierarchicalObjectStore() + else: + log.error("Unrecognized object store definition: {0}".format(store)) def convert_bytes(bytes): """ A helper function used for pretty printing disk usage """ @@ -1039,3 +1039,26 @@ else: size = '%.2fb' % bytes return size + +def get_OS_connection(config): + """ + Get a connection object for a cloud Object Store specified in the config. + Currently, this is a ``boto`` connection object. + """ + log.debug("Getting a connection object for '{0}' object store".format(config.object_store)) + a_key = config.os_access_key + s_key = config.os_secret_key + if config.object_store == 's3': + return S3Connection(a_key, s_key) + else: + # Establish the connection now + calling_format = boto.s3.connection.OrdinaryCallingFormat() + s3_conn = boto.connect_s3(aws_access_key_id=a_key, + aws_secret_access_key=s_key, + is_secure=config.os_is_secure, + host=config.os_host, + port=int(config.os_port), + calling_format=calling_format, + path=config.os_conn_path) + return s3_conn + diff -r be81990d148a81bc2896c3c543d2ff70ad9c3c67 -r 7980b6390e48db3bb0ae2f385d259a994e64b3f0 universe_wsgi.ini.sample --- a/universe_wsgi.ini.sample +++ b/universe_wsgi.ini.sample @@ -481,16 +481,22 @@ # -- Beta features -# Object store mode (valid options are: disk, s3, distributed, hierarchical) +# Object store mode (valid options are: disk, s3, swift, distributed, hierarchical) #object_store = disk -#aws_access_key = <AWS access key> -#aws_secret_key = <AWS secret key> -#s3_bucket = <name of an existing S3 bucket> -#use_reduced_redundancy = True - +#os_access_key = <your cloud object store access key> +#os_secret_key = <your cloud object store secret key> +#os_bucket_name = <name of an existing object store bucket or container> +# If using 'swift' object store, you must specify the following connection properties +#os_host = swift.rc.nectar.org.au +#os_port = 8888 +#os_is_secure = False +#os_conn_path = / +# Reduced redundancy can be used only with the 's3' object store +#os_use_reduced_redundancy = False # Size (in GB) that the cache used by object store should be limited to. -# If the value is not specified, the cache size will be limited only by the file -# system size. +# If the value is not specified, the cache size will be limited only by the +# file system size. The file system location of the cache is considered the +# configuration of the ``file_path`` directive defined above. #object_store_cache_size = 100 # Configuration file for the distributed object store, if object_store = https://bitbucket.org/galaxy/galaxy-central/changeset/7387d61dfd59/ changeset: 7387d61dfd59 user: afgane date: 2012-08-16 01:50:00 summary: Handle AWS-specific config options for backward compatibility affected #: 1 file diff -r 7980b6390e48db3bb0ae2f385d259a994e64b3f0 -r 7387d61dfd59ca588bb84a57272beed1bb930abb lib/galaxy/config.py --- a/lib/galaxy/config.py +++ b/lib/galaxy/config.py @@ -169,14 +169,21 @@ if self.nginx_upload_store: self.nginx_upload_store = os.path.abspath( self.nginx_upload_store ) self.object_store = kwargs.get( 'object_store', 'disk' ) - self.os_access_key = kwargs.get( 'os_access_key', None ) - self.os_secret_key = kwargs.get( 'os_secret_key', None ) - self.os_bucket_name = kwargs.get( 'os_bucket_name', None ) + # Handle AWS-specific config options for backward compatibility + if kwargs.get( 'aws_access_key', None) is not None: + self.os_access_key= kwargs.get( 'aws_access_key', None ) + self.os_secret_key= kwargs.get( 'aws_secret_key', None ) + self.os_bucket_name= kwargs.get( 's3_bucket', None ) + self.os_use_reduced_redundancy = kwargs.get( 'use_reduced_redundancy', False ) + else: + self.os_access_key = kwargs.get( 'os_access_key', None ) + self.os_secret_key = kwargs.get( 'os_secret_key', None ) + self.os_bucket_name = kwargs.get( 'os_bucket_name', None ) + self.os_use_reduced_redundancy = kwargs.get( 'os_use_reduced_redundancy', False ) self.os_host = kwargs.get( 'os_host', None ) self.os_port = kwargs.get( 'os_port', None ) self.os_is_secure = string_as_bool( kwargs.get( 'os_is_secure', True ) ) self.os_conn_path = kwargs.get( 'os_conn_path', '/' ) - self.os_use_reduced_redundancy = kwargs.get( 'os_use_reduced_redundancy', False ) self.object_store_cache_size = float(kwargs.get( 'object_store_cache_size', -1 )) self.distributed_object_store_config_file = kwargs.get( 'distributed_object_store_config_file', None ) # Parse global_conf and save the parser https://bitbucket.org/galaxy/galaxy-central/changeset/a42eae47ae87/ changeset: a42eae47ae87 user: afgane date: 2012-08-16 01:57:05 summary: Merge affected #: 24 files diff -r 7387d61dfd59ca588bb84a57272beed1bb930abb -r a42eae47ae877073a077527463beb32e251d7035 lib/galaxy/jobs/__init__.py --- a/lib/galaxy/jobs/__init__.py +++ b/lib/galaxy/jobs/__init__.py @@ -309,9 +309,10 @@ return self.fail( job.info ) # Check the tool's stdout, stderr, and exit code for errors, but only - # if the job has not already been marked as having an error. + # if the job has not already been marked as having an error. + # The job's stdout and stderr will be set accordingly. if job.states.ERROR != job.state: - if ( self.check_tool_output( stdout, stderr, tool_exit_code ) ): + if ( self.check_tool_output( stdout, stderr, tool_exit_code, job )): job.state = job.states.OK else: job.state = job.states.ERROR @@ -335,7 +336,7 @@ log.warning( "finish(): %s not found, but %s is not empty, so it will be used instead" % ( dataset_path.false_path, dataset_path.real_path ) ) else: return self.fail( "Job %s's output dataset(s) could not be read" % job.id ) - job_context = ExpressionContext( dict( stdout = stdout, stderr = stderr ) ) + job_context = ExpressionContext( dict( stdout = job.stdout, stderr = job.stderr ) ) job_tool = self.app.toolbox.tools_by_id.get( job.tool_id, None ) @@ -430,12 +431,12 @@ # will now be seen by the user. self.sa_session.flush() # Save stdout and stderr - if len( stdout ) > 32768: + if len( job.stdout ) > 32768: log.error( "stdout for job %d is greater than 32K, only first part will be logged to database" % job.id ) - job.stdout = stdout[:32768] - if len( stderr ) > 32768: + job.stdout = job.stdout[:32768] + if len( job.stderr ) > 32768: log.error( "stderr for job %d is greater than 32K, only first part will be logged to database" % job.id ) - job.stderr = stderr[:32768] + job.stderr = job.stderr[:32768] # custom post process setup inp_data = dict( [ ( da.name, da.dataset ) for da in job.input_datasets ] ) out_data = dict( [ ( da.name, da.dataset ) for da in job.output_datasets ] ) @@ -457,7 +458,7 @@ # Call 'exec_after_process' hook self.tool.call_hook( 'exec_after_process', self.queue.app, inp_data=inp_data, out_data=out_data, param_dict=param_dict, - tool=self.tool, stdout=stdout, stderr=stderr ) + tool=self.tool, stdout=job.stdout, stderr=job.stderr ) job.command_line = self.command_line bytes = 0 @@ -477,7 +478,7 @@ if self.app.config.cleanup_job == 'always' or ( not stderr and self.app.config.cleanup_job == 'onsuccess' ): self.cleanup() - def check_tool_output( self, stdout, stderr, tool_exit_code ): + def check_tool_output( self, stdout, stderr, tool_exit_code, job ): """ Check the output of a tool - given the stdout, stderr, and the tool's exit code, return True if the tool exited succesfully and False @@ -487,8 +488,8 @@ Note that, if the tool did not define any exit code handling or any stdio/stderr handling, then it reverts back to previous behavior: if stderr contains anything, then False is returned. + Note that the job id is just for messages. """ - job = self.get_job() err_msg = "" # By default, the tool succeeded. This covers the case where the code # has a bug but the tool was ok, and it lets a workflow continue. @@ -497,10 +498,14 @@ try: # Check exit codes and match regular expressions against stdout and # stderr if this tool was configured to do so. + # If there is a regular expression for scanning stdout/stderr, + # then we assume that the tool writer overwrote the default + # behavior of just setting an error if there is *anything* on + # stderr. if ( len( self.tool.stdio_regexes ) > 0 or len( self.tool.stdio_exit_codes ) > 0 ): - # We will check the exit code ranges in the order in which - # they were specified. Each exit_code is a ToolStdioExitCode + # Check the exit code ranges in the order in which + # they were specified. Each exit_code is a StdioExitCode # that includes an applicable range. If the exit code was in # that range, then apply the error level and add in a message. # If we've reached a fatal error rule, then stop. @@ -508,24 +513,33 @@ for stdio_exit_code in self.tool.stdio_exit_codes: if ( tool_exit_code >= stdio_exit_code.range_start and tool_exit_code <= stdio_exit_code.range_end ): - if None != stdio_exit_code.desc: - err_msg += stdio_exit_code.desc - # TODO: Find somewhere to stick the err_msg - possibly to - # the source (stderr/stdout), possibly in a new db column. + # Tack on a generic description of the code + # plus a specific code description. For example, + # this might append "Job 42: Warning: Out of Memory\n". + # TODO: Find somewhere to stick the err_msg - + # possibly to the source (stderr/stdout), possibly + # in a new db column. + code_desc = stdio_exit_code.desc + if ( None == code_desc ): + code_desc = "" + tool_msg = ( "Job %s: %s: Exit code %d: %s" % ( + job.get_id_tag(), + galaxy.tools.StdioErrorLevel.desc( tool_exit_code ), + tool_exit_code, + code_desc ) ) + log.info( tool_msg ) + stderr = err_msg + stderr max_error_level = max( max_error_level, stdio_exit_code.error_level ) - if max_error_level >= galaxy.tools.StdioErrorLevel.FATAL: + if ( max_error_level >= + galaxy.tools.StdioErrorLevel.FATAL ): break - # If there is a regular expression for scanning stdout/stderr, - # then we assume that the tool writer overwrote the default - # behavior of just setting an error if there is *anything* on - # stderr. if max_error_level < galaxy.tools.StdioErrorLevel.FATAL: # We'll examine every regex. Each regex specifies whether # it is to be run on stdout, stderr, or both. (It is # possible for neither stdout nor stderr to be scanned, - # but those won't be scanned.) We record the highest + # but those regexes won't be used.) We record the highest # error level, which are currently "warning" and "fatal". # If fatal, then we set the job's state to ERROR. # If warning, then we still set the job's state to OK @@ -539,19 +553,32 @@ # Repeat the stdout stuff for stderr. # TODO: Collapse this into a single function. if ( regex.stdout_match ): - regex_match = re.search( regex.match, stdout ) + regex_match = re.search( regex.match, stdout, + re.IGNORECASE ) if ( regex_match ): - err_msg += self.regex_err_msg( regex_match, regex ) - max_error_level = max( max_error_level, regex.error_level ) - if max_error_level >= galaxy.tools.StdioErrorLevel.FATAL: + rexmsg = self.regex_err_msg( regex_match, regex) + log.info( "Job %s: %s" + % ( job.get_id_tag(), rexmsg ) ) + stdout = rexmsg + "\n" + stdout + max_error_level = max( max_error_level, + regex.error_level ) + if ( max_error_level >= + galaxy.tools.StdioErrorLevel.FATAL ): break - if ( regex.stderr_match ): - regex_match = re.search( regex.match, stderr ) + + if ( regex.stderr_match ): + regex_match = re.search( regex.match, stderr, + re.IGNORECASE ) if ( regex_match ): - err_msg += self.regex_err_msg( regex_match, regex ) - max_error_level = max( max_error_level, + rexmsg = self.regex_err_msg( regex_match, regex) + # DELETEME + log.info( "Job %s: %s" + % ( job.get_id_tag(), rexmsg ) ) + stderr = rexmsg + "\n" + stderr + max_error_level = max( max_error_level, regex.error_level ) - if max_error_level >= galaxy.tools.StdioErrorLevel.FATAL: + if ( max_error_level >= + galaxy.tools.StdioErrorLevel.FATAL ): break # If we encountered a fatal error, then we'll need to set the @@ -565,17 +592,26 @@ # default to the previous behavior: when there's anything on stderr # the job has an error, and the job is ok otherwise. else: - log.debug( "The tool did not define exit code or stdio handling; " + # TODO: Add in the tool and job id: + log.debug( "Tool did not define exit code or stdio handling; " + "checking stderr for success" ) if stderr: success = False else: success = True + # On any exception, return True. except: + tb = traceback.format_exc() log.warning( "Tool check encountered unexpected exception; " - + "assuming tool was successful" ) + + "assuming tool was successful: " + tb ) success = True + + # Store the modified stdout and stderr in the job: + if None != job: + job.stdout = stdout + job.stderr = stderr + return success def regex_err_msg( self, match, regex ): diff -r 7387d61dfd59ca588bb84a57272beed1bb930abb -r a42eae47ae877073a077527463beb32e251d7035 lib/galaxy/jobs/handler.py --- a/lib/galaxy/jobs/handler.py +++ b/lib/galaxy/jobs/handler.py @@ -360,7 +360,7 @@ def __init__( self, app ): self.app = app self.job_runners = {} - start_job_runners = ["local"] + start_job_runners = ["local", "lwr", "dynamic"] if app.config.start_job_runners is not None: start_job_runners.extend( [ x.strip() for x in util.listify( app.config.start_job_runners ) ] ) if app.config.use_tasked_jobs: diff -r 7387d61dfd59ca588bb84a57272beed1bb930abb -r a42eae47ae877073a077527463beb32e251d7035 lib/galaxy/jobs/runners/drmaa.py --- a/lib/galaxy/jobs/runners/drmaa.py +++ b/lib/galaxy/jobs/runners/drmaa.py @@ -339,6 +339,8 @@ # By default, the exit code is 0, which typically indicates success. exit_code = 0 exit_code_str = "0" + # To ensure that files below are readable, ownership must be reclaimed first + drm_job_state.job_wrapper.reclaim_ownership() while which_try < (self.app.config.retry_job_output_collection + 1): try: ofh = file(ofile, "r") diff -r 7387d61dfd59ca588bb84a57272beed1bb930abb -r a42eae47ae877073a077527463beb32e251d7035 lib/galaxy/tool_shed/install_manager.py --- a/lib/galaxy/tool_shed/install_manager.py +++ b/lib/galaxy/tool_shed/install_manager.py @@ -136,27 +136,22 @@ repository_clone_url=repository_clone_url, relative_install_dir=relative_install_dir, repository_files_dir=None, - resetting_all_metadata_on_repository=False ) + resetting_all_metadata_on_repository=False, + webapp='galaxy' ) tool_shed_repository.metadata = metadata_dict self.app.sa_session.add( tool_shed_repository ) self.app.sa_session.flush() if 'tool_dependencies' in metadata_dict: # All tool_dependency objects must be created before the tools are processed even if no tool dependencies will be installed. - tool_dependencies = create_tool_dependency_objects( self.app, tool_shed_repository, tool_shed_repository.installed_changeset_revision, set_status=True ) + tool_dependencies = create_tool_dependency_objects( self.app, tool_shed_repository, relative_install_dir, set_status=True ) else: tool_dependencies = None if 'tools' in metadata_dict: - work_dir = tempfile.mkdtemp() repository_tools_tups = get_repository_tools_tups( self.app, metadata_dict ) if repository_tools_tups: sample_files = metadata_dict.get( 'sample_files', [] ) # Handle missing data table entries for tool parameters that are dynamically generated select lists. - repository_tools_tups = handle_missing_data_table_entry( self.app, - tool_shed_repository, - tool_shed_repository.installed_changeset_revision, - self.tool_path, - repository_tools_tups, - work_dir ) + repository_tools_tups = handle_missing_data_table_entry( self.app, relative_install_dir, self.tool_path, repository_tools_tups ) # Handle missing index files for tool parameters that are dynamically generated select lists. repository_tools_tups, sample_files_copied = handle_missing_index_file( self.app, self.tool_path, sample_files, repository_tools_tups ) # Copy remaining sample files included in the repository to the ~/tool-data directory of the local Galaxy instance. @@ -166,12 +161,8 @@ update_tool_shed_repository_status( self.app, tool_shed_repository, self.app.model.ToolShedRepository.installation_status.INSTALLING_TOOL_DEPENDENCIES ) - # Get the tool_dependencies.xml file from the repository. - tool_dependencies_config = get_config_from_repository( self.app, - 'tool_dependencies.xml', - tool_shed_repository, - tool_shed_repository.installed_changeset_revision, - work_dir ) + # Get the tool_dependencies.xml file from disk. + tool_dependencies_config = get_config_from_disk( 'tool_dependencies.xml', relative_install_dir ) installed_tool_dependencies = handle_tool_dependencies( app=self.app, tool_shed_repository=tool_shed_repository, tool_dependencies_config=tool_dependencies_config, @@ -189,10 +180,6 @@ self.migrated_tools_config, tool_panel_dict=tool_panel_dict_for_display, new_install=True ) - try: - shutil.rmtree( work_dir ) - except: - pass if 'datatypes' in metadata_dict: tool_shed_repository.status = self.app.model.ToolShedRepository.installation_status.LOADING_PROPRIETARY_DATATYPES if not tool_shed_repository.includes_datatypes: @@ -200,11 +187,7 @@ self.app.sa_session.add( tool_shed_repository ) self.app.sa_session.flush() work_dir = tempfile.mkdtemp() - datatypes_config = get_config_from_repository( self.app, - 'datatypes_conf.xml', - tool_shed_repository, - tool_shed_repository.installed_changeset_revision, - work_dir ) + datatypes_config = get_config_from_disk( 'datatypes_conf.xml', relative_install_dir ) # Load proprietary data types required by tools. The value of override is not important here since the Galaxy server will be started # after this installation completes. converter_path, display_path = alter_config_and_load_prorietary_datatypes( self.app, datatypes_config, relative_install_dir, override=False ) diff -r 7387d61dfd59ca588bb84a57272beed1bb930abb -r a42eae47ae877073a077527463beb32e251d7035 lib/galaxy/tools/__init__.py --- a/lib/galaxy/tools/__init__.py +++ b/lib/galaxy/tools/__init__.py @@ -922,16 +922,11 @@ if self_id in self.app.config.tool_handlers: self.job_handlers = self.app.config.tool_handlers[ self_id ] # Set job runner(s). Each runner is a dict with 'url' and, optionally, 'params'. - if self.app.config.start_job_runners is None: - # Jobs are always local regardless of tool config if no additional - # runners are started - self.job_runners = [ { "url" : "local:///" } ] - else: - # Set job runner to the cluster default - self.job_runners = [ { "url" : self.app.config.default_cluster_job_runner } ] - # Set custom runner(s) if they're defined. - if self_id in self.app.config.tool_runners: - self.job_runners = self.app.config.tool_runners[ self_id ] + # Set job runner to the cluster default + self.job_runners = [ { "url" : self.app.config.default_cluster_job_runner } ] + # Set custom runner(s) if they're defined. + if self_id in self.app.config.tool_runners: + self.job_runners = self.app.config.tool_runners[ self_id ] # Is this a 'hidden' tool (hidden in tool menu) self.hidden = util.xml_text(root, "hidden") if self.hidden: self.hidden = util.string_as_bool(self.hidden) @@ -1316,6 +1311,8 @@ return_level = StdioErrorLevel.WARNING elif ( re.search( "fatal", err_level, re.IGNORECASE ) ): return_level = StdioErrorLevel.FATAL + else: + log.debug( "Error level %s did not match warning/fatal" % err_level ) except Exception, e: log.error( "Exception in parse_error_level " + str(sys.exc_info() ) ) diff -r 7387d61dfd59ca588bb84a57272beed1bb930abb -r a42eae47ae877073a077527463beb32e251d7035 lib/galaxy/util/shed_util.py --- a/lib/galaxy/util/shed_util.py +++ b/lib/galaxy/util/shed_util.py @@ -248,7 +248,7 @@ except: pass return converter_path, display_path -def check_tool_input_params( app, repo_dir, tool_config_name, tool, sample_files ): +def check_tool_input_params( app, repo_dir, tool_config_name, tool, sample_files, webapp='galaxy' ): """ Check all of the tool's input parameters, looking for any that are dynamically generated using external data files to make sure the files exist. @@ -291,8 +291,9 @@ correction_msg = "This file refers to a file named %s. " % str( index_file ) correction_msg += "Upload a file named %s.sample to the repository to correct this error." % str( index_file_name ) invalid_files_and_errors_tups.append( ( tool_config_name, correction_msg ) ) - # Reset the tool_data_tables by loading the empty tool_data_table_conf.xml file. - reset_tool_data_tables( app ) + if webapp == 'community': + # Reset the tool_data_tables by loading the empty tool_data_table_conf.xml file. + reset_tool_data_tables( app ) return invalid_files_and_errors_tups def config_elems_to_xml_file( app, config_elems, config_filename, tool_path ): # Persist the current in-memory list of config_elems to a file named by the value of config_filename. @@ -427,16 +428,11 @@ sa_session.add( tool_shed_repository ) sa_session.flush() return tool_shed_repository -def create_tool_dependency_objects( app, tool_shed_repository, current_changeset_revision, set_status=True ): +def create_tool_dependency_objects( app, tool_shed_repository, relative_install_dir, set_status=True ): # Create or update a ToolDependency for each entry in tool_dependencies_config. This method is called when installing a new tool_shed_repository. tool_dependency_objects = [] - work_dir = tempfile.mkdtemp() # Get the tool_dependencies.xml file from the repository. - tool_dependencies_config = get_config_from_repository( app, - 'tool_dependencies.xml', - tool_shed_repository, - current_changeset_revision, - work_dir ) + tool_dependencies_config = get_config_from_disk( 'tool_dependencies.xml', relative_install_dir ) tree = ElementTree.parse( tool_dependencies_config ) root = tree.getroot() ElementInclude.include( root ) @@ -454,10 +450,6 @@ status=app.model.ToolDependency.installation_status.NEVER_INSTALLED, set_status=set_status ) tool_dependency_objects.append( tool_dependency ) - try: - shutil.rmtree( work_dir ) - except: - pass return tool_dependency_objects def generate_clone_url( trans, repository ): """Generate the URL for cloning a repository.""" @@ -541,14 +533,15 @@ if req_name==tool_dependency_name and req_version==tool_dependency_version and req_type==tool_dependency_type: can_generate_dependency_metadata = True break - if not can_generate_dependency_metadata: + if requirements and not can_generate_dependency_metadata: # We've discovered at least 1 combination of name, version and type that is not defined in the <requirement> # tag for any tool in the repository. break if not can_generate_dependency_metadata: break return can_generate_dependency_metadata -def generate_metadata_for_changeset_revision( app, repository_clone_url, relative_install_dir=None, repository_files_dir=None, resetting_all_metadata_on_repository=False ): +def generate_metadata_for_changeset_revision( app, repository_clone_url, relative_install_dir=None, repository_files_dir=None, + resetting_all_metadata_on_repository=False, webapp='galaxy' ): """ Generate metadata for a repository using it's files on disk. To generate metadata for changeset revisions older than the repository tip, the repository will have been cloned to a temporary location and updated to a specified changeset revision to access that changeset revision's @@ -629,7 +622,7 @@ invalid_tool_configs.append( name ) invalid_file_tups.append( ( name, str( e ) ) ) if tool is not None: - invalid_files_and_errors_tups = check_tool_input_params( app, files_dir, name, tool, sample_files ) + invalid_files_and_errors_tups = check_tool_input_params( app, files_dir, name, tool, sample_files, webapp=webapp ) can_set_metadata = True for tup in invalid_files_and_errors_tups: if name in tup: @@ -664,7 +657,7 @@ metadata_dict = generate_tool_dependency_metadata( tool_dependencies_config, metadata_dict ) if invalid_tool_configs: metadata_dict [ 'invalid_tools' ] = invalid_tool_configs - if resetting_all_metadata_on_repository: + if webapp == 'community' and resetting_all_metadata_on_repository: # Reset the tool_data_tables by loading the empty tool_data_table_conf.xml file. reset_tool_data_tables( app ) # Reset the value of the app's tool_data_path to it's original value. @@ -1255,7 +1248,7 @@ return shed_url # The tool shed from which the repository was originally installed must no longer be configured in tool_sheds_conf.xml. return None -def handle_missing_data_table_entry( app, repository, changeset_revision, tool_path, repository_tools_tups, dir ): +def handle_missing_data_table_entry( app, relative_install_dir, tool_path, repository_tools_tups ): """ Inspect each tool to see if any have input parameters that are dynamically generated select lists that require entries in the tool_data_table_conf.xml file. This method is called only from Galaxy (not the tool shed) when a repository is being installed @@ -1269,7 +1262,7 @@ break if missing_data_table_entry: # The repository must contain a tool_data_table_conf.xml.sample file that includes all required entries for all tools in the repository. - sample_tool_data_table_conf = get_config_from_repository( app, 'tool_data_table_conf.xml.sample', repository, changeset_revision, dir ) + sample_tool_data_table_conf = get_config_from_disk( 'tool_data_table_conf.xml.sample', relative_install_dir ) # Add entries to the ToolDataTableManager's in-memory data_tables dictionary as well as the list of data_table_elems and the list of # data_table_elem_names. error, correction_msg = handle_sample_tool_data_table_conf_file( app, sample_tool_data_table_conf, persist=True ) @@ -1394,14 +1387,8 @@ def load_installed_datatypes( app, repository, relative_install_dir, deactivate=False ): # Load proprietary datatypes and return information needed for loading proprietary datatypes converters and display applications later. metadata = repository.metadata - work_dir = tempfile.mkdtemp() repository_dict = None - datatypes_config = get_config_from_repository( app, - 'datatypes_conf.xml', - repository, - repository.changeset_revision, - work_dir, - install_dir=relative_install_dir ) + datatypes_config = get_config_from_disk( 'datatypes_conf.xml', relative_install_dir ) if datatypes_config: converter_path, display_path = alter_config_and_load_prorietary_datatypes( app, datatypes_config, relative_install_dir, deactivate=deactivate ) if converter_path or display_path: @@ -1413,10 +1400,6 @@ tool_dicts=metadata.get( 'tools', [] ), converter_path=converter_path, display_path=display_path ) - try: - shutil.rmtree( work_dir ) - except: - pass return repository_dict def load_installed_display_applications( app, installed_repository_dict, deactivate=False ): # Load or deactivate proprietary datatype display applications diff -r 7387d61dfd59ca588bb84a57272beed1bb930abb -r a42eae47ae877073a077527463beb32e251d7035 lib/galaxy/visualization/tracks/data_providers.py --- a/lib/galaxy/visualization/tracks/data_providers.py +++ b/lib/galaxy/visualization/tracks/data_providers.py @@ -947,55 +947,72 @@ return dict( data=dict( min=summary.min_val[0], max=summary.max_val[0], mean=mean, sd=sd ) ) - # The following seems not to work very well, for example it will only return one - # data point if the tile is 1280px wide. Not sure what the intent is. + # Sample from region using approximately this many samples. + N = 1000 - # The first zoom level for BBI files is 640. If too much is requested, it will look at each block instead - # of summaries. The calculation done is: zoom <> (end-start)/num_points/2. - # Thus, the optimal number of points is (end-start)/num_points/2 = 640 - # num_points = (end-start) / 1280 - #num_points = (end-start) / 1280 - #if num_points < 1: - # num_points = end - start - #else: - # num_points = min(num_points, 500) + def summarize_region( bbi, chrom, start, end, num_points ): + ''' + Returns results from summarizing a region using num_points. + NOTE: num_points cannot be greater than end - start or BBI + will return None for all positions.s + ''' + result = [] - # For now, we'll do 1000 data points by default. However, the summaries - # don't seem to work when a summary pixel corresponds to less than one - # datapoint, so we prevent that. + # Get summary; this samples at intervals of length + # (end - start)/num_points -- i.e. drops any fractional component + # of interval length. + summary = bbi.summarize( chrom, start, end, num_points ) + if summary: + #mean = summary.sum_data / summary.valid_count + + ## Standard deviation by bin, not yet used + ## var = summary.sum_squares - mean + ## var /= minimum( valid_count - 1, 1 ) + ## sd = sqrt( var ) + + pos = start + step_size = (end - start) / num_points - # FIXME: need to choose the number of points to maximize coverage of the area. - # It appears that BBI calculates points using intervals of - # floor( num_points / end - start ) - # In some cases, this prevents sampling near the end of the interval, - # especially when (a) the total interval is small ( < 20-30Kb) and (b) the - # computed interval size has a large fraction, e.g. 14.7 or 35.8 - num_points = min( 1000, end - start ) + for i in range( num_points ): + result.append( (pos, float_nan( summary.sum_data[i] / summary.valid_count[i] ) ) ) + pos += step_size - # HACK to address the FIXME above; should generalize. - if end - start <= 2000: - num_points = end - start + return result - summary = bbi.summarize( chrom, start, end, num_points ) + # Approach is different depending on region size. + if end - start < N: + # Get values for individual bases in region, including start and end. + # To do this, need to increase end to next base and request number of points. + num_points = end - start + 1 + end += 1 + else: + # + # The goal is to sample the region between start and end uniformly + # using ~N data points. The challenge is that the size of sampled + # intervals rarely is full bases, so sampling using N points will + # leave the end of the region unsampled due to remainders for each + # interval. To recitify this, a new N is calculated based on the + # step size that covers as much of the region as possible. + # + # However, this still leaves some of the region unsampled. This + # could be addressed by repeatedly sampling remainder using a + # smaller and smaller step_size, but that would require iteratively + # going to BBI, which could be time consuming. + # + + # Start with N samples. + num_points = N + step_size = ( end - start ) / num_points + # Add additional points to sample in the remainder not covered by + # the initial N samples. + remainder_start = start + step_size * num_points + additional_points = ( end - remainder_start ) / step_size + num_points += additional_points + + result = summarize_region( bbi, chrom, start, end, num_points ) + + # Cleanup and return. f.close() - - result = [] - - if summary: - #mean = summary.sum_data / summary.valid_count - - ## Standard deviation by bin, not yet used - ## var = summary.sum_squares - mean - ## var /= minimum( valid_count - 1, 1 ) - ## sd = sqrt( var ) - - pos = start - step_size = (end - start) / num_points - - for i in range( num_points ): - result.append( (pos, float_nan( summary.sum_data[i] / summary.valid_count[i] ) ) ) - pos += step_size - return { 'data': result } class BigBedDataProvider( BBIDataProvider ): diff -r 7387d61dfd59ca588bb84a57272beed1bb930abb -r a42eae47ae877073a077527463beb32e251d7035 lib/galaxy/web/controllers/admin_toolshed.py --- a/lib/galaxy/web/controllers/admin_toolshed.py +++ b/lib/galaxy/web/controllers/admin_toolshed.py @@ -525,13 +525,8 @@ # Get the tool_shed_repository from one of the tool_dependencies. message = '' tool_shed_repository = tool_dependencies[ 0 ].tool_shed_repository - work_dir = tempfile.mkdtemp() # Get the tool_dependencies.xml file from the repository. - tool_dependencies_config = get_config_from_repository( trans.app, - 'tool_dependencies.xml', - tool_shed_repository, - tool_shed_repository.changeset_revision, - work_dir ) + tool_dependencies_config = get_config_from_disk( 'tool_dependencies.xml', tool_shed_repository.repo_path( trans.app ) ) installed_tool_dependencies = handle_tool_dependencies( app=trans.app, tool_shed_repository=tool_shed_repository, tool_dependencies_config=tool_dependencies_config, @@ -539,10 +534,6 @@ for installed_tool_dependency in installed_tool_dependencies: if installed_tool_dependency.status == trans.app.model.ToolDependency.installation_status.ERROR: message += ' %s' % installed_tool_dependency.error_message - try: - shutil.rmtree( work_dir ) - except: - pass tool_dependency_ids = [ trans.security.encode_id( td.id ) for td in tool_dependencies ] if message: status = 'error' @@ -663,11 +654,7 @@ tool_shed_repository, trans.model.ToolShedRepository.installation_status.INSTALLING_TOOL_DEPENDENCIES ) # Get the tool_dependencies.xml file from the repository. - tool_dependencies_config = get_config_from_repository( trans.app, - 'tool_dependencies.xml', - tool_shed_repository, - tool_shed_repository.installed_changeset_revision, - work_dir ) + tool_dependencies_config = get_config_from_disk( 'tool_dependencies.xml', relative_install_dir ) installed_tool_dependencies = handle_tool_dependencies( app=trans.app, tool_shed_repository=tool_shed_repository, tool_dependencies_config=tool_dependencies_config, @@ -691,24 +678,19 @@ repository_clone_url=repository_clone_url, relative_install_dir=relative_install_dir, repository_files_dir=None, - resetting_all_metadata_on_repository=False ) + resetting_all_metadata_on_repository=False, + webapp='galaxy' ) tool_shed_repository.metadata = metadata_dict trans.sa_session.add( tool_shed_repository ) trans.sa_session.flush() if 'tool_dependencies' in metadata_dict and not reinstalling: - tool_dependencies = create_tool_dependency_objects( trans.app, tool_shed_repository, tool_shed_repository.installed_changeset_revision, set_status=True ) + tool_dependencies = create_tool_dependency_objects( trans.app, tool_shed_repository, relative_install_dir, set_status=True ) if 'tools' in metadata_dict: tool_panel_dict = generate_tool_panel_dict_for_new_install( metadata_dict[ 'tools' ], tool_section ) repository_tools_tups = get_repository_tools_tups( trans.app, metadata_dict ) if repository_tools_tups: # Handle missing data table entries for tool parameters that are dynamically generated select lists. - work_dir = tempfile.mkdtemp() - repository_tools_tups = handle_missing_data_table_entry( trans.app, - tool_shed_repository, - tool_shed_repository.changeset_revision, - tool_path, - repository_tools_tups, - work_dir ) + repository_tools_tups = handle_missing_data_table_entry( trans.app, relative_install_dir, tool_path, repository_tools_tups ) # Handle missing index files for tool parameters that are dynamically generated select lists. sample_files = metadata_dict.get( 'sample_files', [] ) repository_tools_tups, sample_files_copied = handle_missing_index_file( trans.app, tool_path, sample_files, repository_tools_tups ) @@ -723,22 +705,13 @@ shed_tool_conf=shed_tool_conf, tool_panel_dict=tool_panel_dict, new_install=True ) - try: - shutil.rmtree( work_dir ) - except: - pass if 'datatypes' in metadata_dict: tool_shed_repository.status = trans.model.ToolShedRepository.installation_status.LOADING_PROPRIETARY_DATATYPES if not tool_shed_repository.includes_datatypes: tool_shed_repository.includes_datatypes = True trans.sa_session.add( tool_shed_repository ) trans.sa_session.flush() - work_dir = tempfile.mkdtemp() - datatypes_config = get_config_from_repository( trans.app, - 'datatypes_conf.xml', - tool_shed_repository, - tool_shed_repository.changeset_revision, - work_dir ) + datatypes_config = get_config_from_disk( 'datatypes_conf.xml', relative_install_dir ) # Load data types required by tools. converter_path, display_path = alter_config_and_load_prorietary_datatypes( trans.app, datatypes_config, relative_install_dir, override=False ) if converter_path or display_path: @@ -756,10 +729,6 @@ if display_path: # Load proprietary datatype display applications trans.app.datatypes_registry.load_display_applications( installed_repository_dict=repository_dict ) - try: - shutil.rmtree( work_dir ) - except: - pass @web.expose @web.require_admin def manage_repository( self, trans, **kwd ): @@ -1507,7 +1476,7 @@ trans.sa_session.flush() # Create tool_dependency records if necessary. if 'tool_dependencies' in metadata_dict: - tool_dependencies = create_tool_dependency_objects( trans.app, repository, repository.changeset_revision, set_status=False ) + tool_dependencies = create_tool_dependency_objects( trans.app, repository, relative_install_dir, set_status=False ) message = "The installed repository named '%s' has been updated to change set revision '%s'. " % ( name, latest_changeset_revision ) # See if any tool dependencies can be installed. shed_tool_conf, tool_path, relative_install_dir = get_tool_panel_config_tool_path_install_dir( trans.app, repository ) diff -r 7387d61dfd59ca588bb84a57272beed1bb930abb -r a42eae47ae877073a077527463beb32e251d7035 lib/galaxy/webapps/community/config.py --- a/lib/galaxy/webapps/community/config.py +++ b/lib/galaxy/webapps/community/config.py @@ -87,6 +87,7 @@ self.server_name = '' self.job_manager = '' self.default_job_handlers = [] + self.default_cluster_job_runner = 'local:///' self.job_handlers = [] self.tool_handlers = [] self.tool_runners = [] diff -r 7387d61dfd59ca588bb84a57272beed1bb930abb -r a42eae47ae877073a077527463beb32e251d7035 lib/galaxy/webapps/community/controllers/admin.py --- a/lib/galaxy/webapps/community/controllers/admin.py +++ b/lib/galaxy/webapps/community/controllers/admin.py @@ -696,9 +696,14 @@ owner = repository_name_owner_list[ 1 ] repository = get_repository_by_name_and_owner( trans, name, owner ) try: - reset_all_metadata_on_repository( trans, trans.security.encode_id( repository.id ) ) - log.debug( "Successfully reset metadata on repository %s" % repository.name ) - successful_count += 1 + invalid_file_tups = reset_all_metadata_on_repository( trans, trans.security.encode_id( repository.id ) ) + if invalid_file_tups: + message = generate_message_for_invalid_tools( invalid_file_tups, repository, None, as_html=False ) + log.debug( message ) + unsuccessful_count += 1 + else: + log.debug( "Successfully reset metadata on repository %s" % repository.name ) + successful_count += 1 except Exception, e: log.debug( "Error attempting to reset metadata on repository '%s': %s" % ( repository.name, str( e ) ) ) unsuccessful_count += 1 diff -r 7387d61dfd59ca588bb84a57272beed1bb930abb -r a42eae47ae877073a077527463beb32e251d7035 lib/galaxy/webapps/community/controllers/common.py --- a/lib/galaxy/webapps/community/controllers/common.py +++ b/lib/galaxy/webapps/community/controllers/common.py @@ -277,6 +277,41 @@ return '%s://%s%s/repos/%s/%s' % ( protocol, username, base, repository.user.username, repository.name ) else: return '%s/repos/%s/%s' % ( base_url, repository.user.username, repository.name ) +def generate_message_for_invalid_tools( invalid_file_tups, repository, metadata_dict, as_html=True ): + if as_html: + new_line = ' ' + bold_start = '' + bold_end = '' + else: + new_line = '\n' + bold_start = '' + bold_end = '' + message = '' + if metadata_dict: + message += "Metadata was defined for some items in revision '%s'. " % str( repository.tip ) + message += "Correct the following problems if necessary and reset metadata.%s" % new_line + else: + message += "Metadata cannot be defined for revision '%s' so this revision cannot be automatically " % str( repository.tip ) + message += "installed into a local Galaxy instance. Correct the following problems and reset metadata.%s" % new_line + for itc_tup in invalid_file_tups: + tool_file, exception_msg = itc_tup + if exception_msg.find( 'No such file or directory' ) >= 0: + exception_items = exception_msg.split() + missing_file_items = exception_items[ 7 ].split( '/' ) + missing_file = missing_file_items[ -1 ].rstrip( '\'' ) + if missing_file.endswith( '.loc' ): + sample_ext = '%s.sample' % missing_file + else: + sample_ext = missing_file + correction_msg = "This file refers to a missing file %s%s%s. " % ( bold_start, str( missing_file ), bold_end ) + correction_msg += "Upload a file named %s%s%s to the repository to correct this error." % ( bold_start, sample_ext, bold_end ) + else: + if as_html: + correction_msg = exception_msg + else: + correction_msg = exception_msg.replace( ' ', new_line ).replace( '', bold_start ).replace( '', bold_end ) + message += "%s%s%s - %s%s" % ( bold_start, tool_file, bold_end, correction_msg, new_line ) + return message def generate_tool_guid( trans, repository, tool ): """ Generate a guid for the received tool. The form of the guid is @@ -795,7 +830,8 @@ repository_clone_url=repository_clone_url, relative_install_dir=repo_dir, repository_files_dir=work_dir, - resetting_all_metadata_on_repository=True ) + resetting_all_metadata_on_repository=True, + webapp='community' ) if current_metadata_dict: if not metadata_changeset_revision and not metadata_dict: # We're at the first change set in the change log. @@ -853,6 +889,7 @@ clean_repository_metadata( trans, id, changeset_revisions ) # Set tool version information for all downloadable changeset revisions. Get the list of changeset revisions from the changelog. reset_all_tool_versions( trans, id, repo ) + return invalid_file_tups def set_repository_metadata( trans, repository, content_alert_str='', **kwd ): """ Set metadata using the repository's current disk files, returning specific error messages (if any) to alert the repository owner that the changeset @@ -885,7 +922,8 @@ repository_clone_url=repository_clone_url, relative_install_dir=repo_dir, repository_files_dir=None, - resetting_all_metadata_on_repository=False ) + resetting_all_metadata_on_repository=False, + webapp='community' ) if metadata_dict: downloadable = is_downloadable( metadata_dict ) repository_metadata = None @@ -929,27 +967,7 @@ message += "be defined so this revision cannot be automatically installed into a local Galaxy instance." status = "error" if invalid_file_tups: - if metadata_dict: - message += "Metadata was defined for some items in revision '%s'. " % str( repository.tip ) - message += "Correct the following problems if necessary and reset metadata. " - else: - message += "Metadata cannot be defined for revision '%s' so this revision cannot be automatically " % str( repository.tip ) - message += "installed into a local Galaxy instance. Correct the following problems and reset metadata. " - for itc_tup in invalid_file_tups: - tool_file, exception_msg = itc_tup - if exception_msg.find( 'No such file or directory' ) >= 0: - exception_items = exception_msg.split() - missing_file_items = exception_items[ 7 ].split( '/' ) - missing_file = missing_file_items[ -1 ].rstrip( '\'' ) - if missing_file.endswith( '.loc' ): - sample_ext = '%s.sample' % missing_file - else: - sample_ext = missing_file - correction_msg = "This file refers to a missing file %s. " % str( missing_file ) - correction_msg += "Upload a file named %s to the repository to correct this error." % sample_ext - else: - correction_msg = exception_msg - message += "%s - %s " % ( tool_file, correction_msg ) + message = generate_message_for_invalid_tools( invalid_file_tups, repository, metadata_dict ) status = 'error' return message, status def set_repository_metadata_due_to_new_tip( trans, repository, content_alert_str=None, **kwd ): diff -r 7387d61dfd59ca588bb84a57272beed1bb930abb -r a42eae47ae877073a077527463beb32e251d7035 lib/galaxy/webapps/community/controllers/repository.py --- a/lib/galaxy/webapps/community/controllers/repository.py +++ b/lib/galaxy/webapps/community/controllers/repository.py @@ -458,7 +458,10 @@ metadata = downloadable_revision.metadata invalid_tools = metadata.get( 'invalid_tools', [] ) for invalid_tool_config in invalid_tools: - invalid_tools_dict[ invalid_tool_config ] = ( repository.id, repository.name, downloadable_revision.changeset_revision ) + invalid_tools_dict[ invalid_tool_config ] = ( repository.id, + repository.name, + repository.user.username, + downloadable_revision.changeset_revision ) else: for repository in trans.sa_session.query( trans.model.Repository ) \ .filter( and_( trans.model.Repository.table.c.deleted == False, @@ -468,7 +471,10 @@ metadata = downloadable_revision.metadata invalid_tools = metadata.get( 'invalid_tools', [] ) for invalid_tool_config in invalid_tools: - invalid_tools_dict[ invalid_tool_config ] = ( repository.id, repository.name, downloadable_revision.changeset_revision ) + invalid_tools_dict[ invalid_tool_config ] = ( repository.id, + repository.name, + repository.user.username, + downloadable_revision.changeset_revision ) return trans.fill_template( '/webapps/community/repository/browse_invalid_tools.mako', cntrller=cntrller, invalid_tools_dict=invalid_tools_dict, @@ -1373,6 +1379,7 @@ return trans.response.send_redirect( url ) @web.expose def load_invalid_tool( self, trans, repository_id, tool_config, changeset_revision, **kwd ): + # FIXME: loading an invalid tool should display an appropriate message as to why the tool is invalid. This worked until recently. params = util.Params( kwd ) message = util.restore_text( params.get( 'message', '' ) ) status = params.get( 'status', 'error' ) @@ -1752,9 +1759,14 @@ status=status ) @web.expose def reset_all_metadata( self, trans, id, **kwd ): - reset_all_metadata_on_repository( trans, id, **kwd ) - message = "All repository metadata has been reset." - status = 'done' + invalid_file_tups = reset_all_metadata_on_repository( trans, id, **kwd ) + if invalid_file_tups: + repository = get_repository( trans, id ) + message = generate_message_for_invalid_tools( invalid_file_tups, repository, None ) + status = 'error' + else: + message = "All repository metadata has been reset." + status = 'done' return trans.response.send_redirect( web.url_for( controller='repository', action='manage_repository', id=id, diff -r 7387d61dfd59ca588bb84a57272beed1bb930abb -r a42eae47ae877073a077527463beb32e251d7035 run.sh --- a/run.sh +++ b/run.sh @@ -36,6 +36,10 @@ fi done +if [ -n "$GALAXY_UNIVERSE_CONFIG_DIR" ]; then + python ./scripts/build_universe_config.py "$GALAXY_UNIVERSE_CONFIG_DIR" +fi + # explicitly attempt to fetch eggs before running FETCH_EGGS=1 for arg in "$@"; do diff -r 7387d61dfd59ca588bb84a57272beed1bb930abb -r a42eae47ae877073a077527463beb32e251d7035 scripts/build_universe_config.py --- /dev/null +++ b/scripts/build_universe_config.py @@ -0,0 +1,26 @@ +from ConfigParser import ConfigParser +from os import listdir +from os.path import join +from re import match +from sys import argv + + +def merge(): + "Merges all .ini files in a specified directory into ./universe.ini" + if len(argv) < 2: + message = "%s: Must specify directory to merge configuration files from." % argv[0] + raise Exception(message) + conf_directory = argv[1] + conf_files = [f for f in listdir(conf_directory) if match(r'.*\.ini', f)] + conf_files.sort() + + parser = ConfigParser() + for conf_file in conf_files: + parser.read([join(conf_directory, conf_file)]) + ## TODO: Expand enviroment variables here, that would + ## also make Galaxy much easier to configure. + + parser.write(open("universe_wsgi.ini", 'w')) + +if __name__ == '__main__': + merge() diff -r 7387d61dfd59ca588bb84a57272beed1bb930abb -r a42eae47ae877073a077527463beb32e251d7035 scripts/db_shell.py --- /dev/null +++ b/scripts/db_shell.py @@ -0,0 +1,85 @@ +# This script allows easy access to Galaxy's database layer via the +# Galaxy models. For example:q +# % python -i scripts/db_shel.py +# >>> new_user = User("admin(a)gmail.com") +# >>> new_user.set_password +# >>> sa_session.add(new_user) +# >>> sa_session.commit() +# >>> sa_session.query(User).all() +# +# You can also use this script as a library, for instance see https://gist.github.com/1979583q +# TODO: This script overlaps alot wth manage_db.py and create_db.py, +# these should maybe be refactored to remove duplication. +import sys, os.path, logging + +new_path = [ os.path.join( os.getcwd(), "lib" ) ] +new_path.extend( sys.path[1:] ) # remove scripts/ from the path +sys.path = new_path + +from galaxy import eggs + +import pkg_resources +pkg_resources.require( "sqlalchemy-migrate" ) +pkg_resources.require( "SQLAlchemy" ) + +from ConfigParser import SafeConfigParser + +log = logging.getLogger( __name__ ) + +if sys.argv[-1] in [ 'community' ]: + # Need to pop the last arg so the command line args will be correct + # for sqlalchemy-migrate + webapp = sys.argv.pop() + config_file = 'community_wsgi.ini' + repo = 'lib/galaxy/webapps/community/model/migrate' +else: + # Poor man's optparse + config_file = 'universe_wsgi.ini' + if '-c' in sys.argv: + pos = sys.argv.index( '-c' ) + sys.argv.pop(pos) + config_file = sys.argv.pop( pos ) + if not os.path.exists( config_file ): + print "Galaxy config file does not exist (hint: use '-c config.ini' for non-standard locations): %s" % config_file + sys.exit( 1 ) + repo = 'lib/galaxy/model/migrate' + +cp = SafeConfigParser() +cp.read( config_file ) + +if cp.has_option( "app:main", "database_connection" ): + db_url = cp.get( "app:main", "database_connection" ) +elif cp.has_option( "app:main", "database_file" ): + db_url = "sqlite:///%s?isolation_level=IMMEDIATE" % cp.get( "app:main", "database_file" ) +else: + db_url = "sqlite:///./database/universe.sqlite?isolation_level=IMMEDIATE" + +dialect_to_egg = { + "sqlite" : "pysqlite>=2", + "postgres" : "psycopg2", + "mysql" : "MySQL_python" +} +dialect = ( db_url.split( ':', 1 ) )[0] +try: + egg = dialect_to_egg[dialect] + try: + pkg_resources.require( egg ) + log.debug( "%s egg successfully loaded for %s dialect" % ( egg, dialect ) ) + except: + # If the module is in the path elsewhere (i.e. non-egg), it'll still load. + log.warning( "%s egg not found, but an attempt will be made to use %s anyway" % ( egg, dialect ) ) +except KeyError: + # Let this go, it could possibly work with db's we don't support + log.error( "database_connection contains an unknown SQLAlchemy database dialect: %s" % dialect ) + +# Setup DB scripting environment +from sqlalchemy import * +from sqlalchemy.orm import * +from sqlalchemy.exc import * + +engine = create_engine(db_url, echo=True) +db_session = scoped_session( sessionmaker( bind = engine ) ) +from galaxy.model.mapping import context as sa_session +sa_session.bind = engine +from galaxy.model import * + diff -r 7387d61dfd59ca588bb84a57272beed1bb930abb -r a42eae47ae877073a077527463beb32e251d7035 static/scripts/mvc/history.js --- /dev/null +++ b/static/scripts/mvc/history.js @@ -0,0 +1,145 @@ +/* +TODO: + as always: where does the model end and the view begin? + HistoryPanel + HistoryCollection: (collection of histories: 'Saved Histories') + +CASES: + logged-in/NOT +*/ +//============================================================================== +var HistoryItem = BaseModel.extend({ + // a single history structure + // from: http://localhost:8080/api/histories/f2db41e1fa331b3e/contents/f2db41e1fa331… + /* + { + "data_type": "fastq", + "deleted": false, + "download_url": "/datasets/f2db41e1fa331b3e/display?to_ext=fastq", + "file_size": 226297533, + "genome_build": "?", + "id": "f2db41e1fa331b3e", + "metadata_data_lines": null, + "metadata_dbkey": "?", + "metadata_sequences": null, + "misc_blurb": "215.8 MB", + "misc_info": "uploaded fastq file", + "model_class": "HistoryDatasetAssociation", + "name": "LTCF-2-19_GTGAAA_L001_R1_001.fastq", + "state": "ok", + "visible": true + } + */ + + display : function(){}, + edit_attr : function(){}, + delete : function(){}, + download : function(){}, + details : function(){}, + rerun : function(){}, + tags : function(){}, + annotations : function(){}, + peek : function(){}, +}); + +//.............................................................................. +var HistoryItemView = BaseView.extend({ + // view for History model used in HistoryPanelView + tagName : "div", + className : "historyItemContainer", + + icons : { + display : 'path to icon', + edit_attr : 'path to icon', + delete : 'path to icon', + download : 'path to icon', + details : 'path to icon', + rerun : 'path to icon', + tags : 'path to icon', + annotations : 'path to icon', + }, + + render : function(){ + this.$el.append( 'div' ) + }, + +}); + + + +//============================================================================== +var History = Backbone.Collection.extend({ + // a collection of HistoryItems + + // from: http://localhost:8080/api/histories/f2db41e1fa331b3e + /* + { + "contents_url": "/api/histories/f2db41e1fa331b3e/contents", + "id": "f2db41e1fa331b3e", + "name": "one", + "state": "ok", + "state_details": { + "discarded": 0, + "empty": 0, + "error": 0, + "failed_metadata": 0, + "new": 0, + "ok": 4, + "queued": 0, + "running": 0, + "setting_metadata": 0, + "upload": 0 + } + } + */ + + // from: http://localhost:8080/api/histories/f2db41e1fa331b3e/contents + // (most are replicated in HistoryItem) + /* + [ + { + "id": "f2db41e1fa331b3e", + "name": "LTCF-2-19_GTGAAA_L001_R1_001.fastq", + "type": "file", + "url": "/api/histories/f2db41e1fa331b3e/contents/f2db41e1fa331b3e" + }, + { + "id": "f597429621d6eb2b", + "name": "LTCF-2-19_GTGAAA_L001_R2_001.fastq", + "type": "file", + "url": "/api/histories/f2db41e1fa331b3e/contents/f597429621d6eb2b" + }, + { + "id": "1cd8e2f6b131e891", + "name": "FASTQ Groomer on data 1", + "type": "file", + "url": "/api/histories/f2db41e1fa331b3e/contents/1cd8e2f6b131e891" + }, + { + "id": "ebfb8f50c6abde6d", + "name": "FASTQ Groomer on data 2", + "type": "file", + "url": "/api/histories/f2db41e1fa331b3e/contents/ebfb8f50c6abde6d" + }, + { + "id": "33b43b4e7093c91f", + "name": "Sa.04-02981.fasta", + "type": "file", + "url": "/api/histories/f2db41e1fa331b3e/contents/33b43b4e7093c91f" + } + ] + */ +}); + +//.............................................................................. +var HistoryCollectionView = BaseView.extend({ + // view for the HistoryCollection (as per current right hand panel) + tagName : "body", + className : "historyCollection", + + render : function(){ + + }, + +}); + diff -r 7387d61dfd59ca588bb84a57272beed1bb930abb -r a42eae47ae877073a077527463beb32e251d7035 templates/base_panels.mako --- a/templates/base_panels.mako +++ b/templates/base_panels.mako @@ -54,13 +54,17 @@ var galaxy_paths = new GalaxyPaths({ root_path: '${h.url_for( "/" )}', image_path: '${h.url_for( "/static/images" )}', + tool_url: '${h.url_for( controller="/api/tools" )}', + history_url: '${h.url_for( controller="/api/histories" )}', + data_url: '${h.url_for( controller="/tracks", action="data" )}', raw_data_url: '${h.url_for( controller="/tracks", action="raw_data" )}', converted_datasets_state_url: '${h.url_for( controller="/tracks", action="converted_datasets_state" )}', dataset_state_url: '${h.url_for( controller="/tracks", action="dataset_state" )}', + sweepster_url: '${h.url_for( controller="/tracks", action="sweepster" )}', + visualization_url: '${h.url_for( controller="/visualization", action="save" )}', - sweepster_url: '${h.url_for( controller="/tracks", action="sweepster" )}' }); </script></%def> diff -r 7387d61dfd59ca588bb84a57272beed1bb930abb -r a42eae47ae877073a077527463beb32e251d7035 templates/webapps/community/repository/browse_invalid_tools.mako --- a/templates/webapps/community/repository/browse_invalid_tools.mako +++ b/templates/webapps/community/repository/browse_invalid_tools.mako @@ -13,10 +13,11 @@ <tr><th>Tool config</th><th>Repository name</th> + <th>Repository owner</th><th>Changeset revision</th></tr> %for invalid_tool_config, repository_tup in invalid_tools_dict.items(): - <% repository_id, repository_name, changeset_revision = repository_tup %> + <% repository_id, repository_name, repository_owner, changeset_revision = repository_tup %><tr><td><a class="view-info" href="${h.url_for( controller='repository', action='load_invalid_tool', repository_id=trans.security.encode_id( repository_id ), tool_config=invalid_tool_config, changeset_revision=changeset_revision, webapp=webapp )}"> @@ -24,6 +25,7 @@ </a></td><td>${repository_name}</td> + <td>${repository_owner}</td><td>${changeset_revision}</td></tr> %endfor diff -r 7387d61dfd59ca588bb84a57272beed1bb930abb -r a42eae47ae877073a077527463beb32e251d7035 test-data/bwa_wrapper_out2.sam --- a/test-data/bwa_wrapper_out2.sam +++ b/test-data/bwa_wrapper_out2.sam @@ -1,30 +1,30 @@ -seq1 16 phiX174 322 25 36M * 0 0 GATATTTTAAAGGAGCGTGGATTACTATCTGAGTCC B&&I13A$G$*%$IIIIIII9(.+5$IIIIIII#II XT:A:U NM:i:2 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:2C8A24 -seq10 0 phiX174 4149 37 17M1D19M * 0 0 ATTCTTTCTTTTCGTATCAGGGCGTTGAGTTCGATA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 XM:i:1 XO:i:1 XG:i:1 MD:Z:5G11^G19 -seq11 0 phiX174 4072 37 18M1D18M * 0 0 GCATTTCTACTCCTTCTCATCCCCAATGCTTGGCTT II#IIIIIII$5+.(9IIIIIII$%*$G$A31I&&B XT:A:U NM:i:2 X0:i:1 XM:i:1 XO:i:1 XG:i:1 MD:Z:12T5^A18 +seq1 16 phiX174 322 25 36M * 0 0 GATATTTTAAAGGAGCGTGGATTACTATCTGAGTCC B&&I13A$G$*%$IIIIIII9(.+5$IIIIIII#II XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:2C8A24 +seq2 0 phiX174 141 37 36M * 0 0 ATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +seq3 0 phiX174 505 37 36M * 0 0 GTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +seq4 4 * 0 0 * * 0 0 AGCCGCTCGTCTTTTATGTAGGTGGTCAACCATTTT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +seq5 0 phiX174 4985 25 36M * 0 0 CAGTTATATGGCTTTTGGTTTCTATGTGGCTTAATA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:13G17A4 +seq6 0 phiX174 925 37 11M1D25M * 0 0 AGGCGCTCGTCTTGGTATGTAGGTGGTCAACAATTT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 X0:i:1 X1:i:0 XM:i:0 XO:i:1 XG:i:1 MD:Z:11^T25 +seq7 0 phiX174 943 37 13M1I22M * 0 0 TGTAGGTGGTCAACCAATTTTAATTGCAGGGGCTTC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 X0:i:1 X1:i:0 XM:i:0 XO:i:1 XG:i:1 MD:Z:35 +seq8 4 * 0 0 * * 0 0 ACACCCGTCCTTTACGTCATGCGCTCTATTCTCTGG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +seq9 0 phiX174 2596 37 16M1I19M * 0 0 GCCGCTATTCAGGTTGTTTTCTGTTGGTGCTGATAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:7A27 +seq10 0 phiX174 4149 37 17M1D19M * 0 0 ATTCTTTCTTTTCGTATCAGGGCGTTGAGTTCGATA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:5G11^G19 +seq11 0 phiX174 4072 37 18M1D18M * 0 0 GCATTTCTACTCCTTCTCATCCCCAATGCTTGGCTT II#IIIIIII$5+.(9IIIIIII$%*$G$A31I&&B XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:12T5^A18 seq12 4 * 0 0 * * 0 0 CGCGCTTCGATAAAAATGGGATTGGCGTTTCCAACC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII seq13 4 * 0 0 * * 0 0 ATTTCTACTCTTTCTCATCCCCAATCCTTGCCTTCC IIIIIIIIIIIIIIIIIIIIIAAIIIIIIIIIIIII -seq14 0 phiX174 3998 37 21M1D15M * 0 0 CCCTTTTGAATGTCACGCTGATATTTTGACTTTGAG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 XM:i:1 XO:i:1 XG:i:1 MD:Z:5C15^T15 +seq14 0 phiX174 3998 37 21M1D15M * 0 0 CCCTTTTGAATGTCACGCTGATATTTTGACTTTGAG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:5C15^T15 seq15 4 * 0 0 * * 0 0 CCAACTTACCAAGGTGGGTTACGAAACGCGACGCCG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII seq16 4 * 0 0 * * 0 0 TCAGGGTATTAAAAGAGATTATTTTTCTCCAGCCAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII -seq17 0 phiX174 3034 37 19M1D17M * 0 0 GTGATGTGCTTGCTACCGAAACAATACTTTAGGCAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 XM:i:1 XO:i:1 XG:i:1 MD:Z:19^T9G7 +seq17 0 phiX174 3034 37 19M1D17M * 0 0 GTGATGTGCTTGCTACCGAAACAATACTTTAGGCAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:19^T9G7 seq18 4 * 0 0 * * 0 0 TCAATCCCCCATGCTTGGCCGTTCCATAAGCAGATG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII seq19 4 * 0 0 * * 0 0 TTCCTGCGCTTAATGCTTGAGCGTCCTGGTGCTGAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII -seq2 0 phiX174 141 37 36M * 0 0 ATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 -seq20 0 phiX174 1082 37 36M * 0 0 CTTATTACCATTTCAACTACTCCGGTTATCGCTGGC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 -seq21 0 phiX174 1344 37 15M1D21M * 0 0 CTGATACCAATAAAACCCTAAGCATTTGGTTCAGGG II#IIIIIII$5+.(9IIIIIII$%*$G$A31I&&B XT:A:U NM:i:2 X0:i:1 XM:i:1 XO:i:1 XG:i:1 MD:Z:15^T13T7 +seq20 0 phiX174 1082 37 36M * 0 0 CTTATTACCATTTCAACTACTCCGGTTATCGCTGGC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +seq21 0 phiX174 1344 37 15M1D21M * 0 0 CTGATACCAATAAAACCCTAAGCATTTGGTTCAGGG II#IIIIIII$5+.(9IIIIIII$%*$G$A31I&&B XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:15^T13T7 seq22 4 * 0 0 * * 0 0 AATCAAACTTACCAAGGGGTTACGACGCGACGCCGT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII seq23 4 * 0 0 * * 0 0 TGTGCTTCCCCAACTTGATTTAATAACCCTATAGAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII -seq24 0 phiX174 4084 37 17M1I18M * 0 0 TTTCTCAATCCCCAATGCCTTGGCTTCCCTAAGCAG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 XM:i:1 XO:i:1 XG:i:1 MD:Z:27A7 -seq25 0 phiX174 520 37 16M1I19M * 0 0 TTGCTACTGACCGCTCTTCGTGCTCGTTGCTGCGTT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 XM:i:1 XO:i:1 XG:i:1 MD:Z:26C8 -seq26 0 phiX174 1976 37 36M * 0 0 CCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 -seq27 0 phiX174 2598 37 20M1I15M * 0 0 CGCTAATCAAGTTGTTTCTGTTTGGTGCTGATATTG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 XM:i:1 XO:i:1 XG:i:1 MD:Z:9G25 +seq24 0 phiX174 4084 37 17M1I18M * 0 0 TTTCTCAATCCCCAATGCCTTGGCTTCCCTAAGCAG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:27A7 +seq25 0 phiX174 520 37 16M1I19M * 0 0 TTGCTACTGACCGCTCTTCGTGCTCGTTGCTGCGTT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:26C8 +seq26 0 phiX174 1976 37 36M * 0 0 CCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +seq27 0 phiX174 2598 37 20M1I15M * 0 0 CGCTAATCAAGTTGTTTCTGTTTGGTGCTGATATTG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:9G25 seq28 4 * 0 0 * * 0 0 AAAGAGATTATTTGTCGGTCCAGCCACTAAAGTGAG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII seq29 4 * 0 0 * * 0 0 CAAATTAATGCGCGCTTCGATAATGATTGGGGTATC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII -seq3 0 phiX174 505 37 36M * 0 0 GTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 X0:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 -seq30 0 phiX174 4091 37 18M1I17M * 0 0 ATCCCCTATGCTTGGCTTACCATAAGCAGATGGATA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 XM:i:1 XO:i:1 XG:i:1 MD:Z:6A28 -seq4 4 * 0 0 * * 0 0 AGCCGCTCGTCTTTTATGTAGGTGGTCAACCATTTT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII -seq5 0 phiX174 4985 25 36M * 0 0 CAGTTATATGGCTTTTGGTTTCTATGTGGCTTAATA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:13G17A4 -seq6 0 phiX174 925 37 11M1D25M * 0 0 AGGCGCTCGTCTTGGTATGTAGGTGGTCAACAATTT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 X0:i:1 XM:i:0 XO:i:1 XG:i:1 MD:Z:11^T25 -seq7 0 phiX174 943 37 13M1I22M * 0 0 TGTAGGTGGTCAACCAATTTTAATTGCAGGGGCTTC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 X0:i:1 XM:i:0 XO:i:1 XG:i:1 MD:Z:35 -seq8 4 * 0 0 * * 0 0 ACACCCGTCCTTTACGTCATGCGCTCTATTCTCTGG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII -seq9 0 phiX174 2596 37 16M1I19M * 0 0 GCCGCTATTCAGGTTGTTTTCTGTTGGTGCTGATAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 XM:i:1 XO:i:1 XG:i:1 MD:Z:7A27 +seq30 0 phiX174 4091 37 18M1I17M * 0 0 ATCCCCTATGCTTGGCTTACCATAAGCAGATGGATA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:6A28 diff -r 7387d61dfd59ca588bb84a57272beed1bb930abb -r a42eae47ae877073a077527463beb32e251d7035 test-data/variant_detection/freebayes/freebayes_out_1.output_trace --- a/test-data/variant_detection/freebayes/freebayes_out_1.output_trace +++ /dev/null @@ -1,8 +0,0 @@ -phiX174,1411,allele,phiX174,phiX174,A,60,100 -phiX174,1412,allele,phiX174,phiX174,G,60,100 -phiX174,1413,allele,phiX174,phiX174,C,60,100 -phiX174,1414,allele,phiX174,phiX174,G,60,100 -phiX174,1415,allele,phiX174,phiX174,C,60,100 -phiX174,1416,allele,phiX174,phiX174,C,60,100 -phiX174,1417,allele,phiX174,phiX174,G,60,100 -phiX174,1418,allele,phiX174,phiX174,T,60,100 diff -r 7387d61dfd59ca588bb84a57272beed1bb930abb -r a42eae47ae877073a077527463beb32e251d7035 test-data/variant_detection/freebayes/freebayes_out_1.vcf.contains --- a/test-data/variant_detection/freebayes/freebayes_out_1.vcf.contains +++ /dev/null @@ -1,2 +0,0 @@ -#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A - diff -r 7387d61dfd59ca588bb84a57272beed1bb930abb -r a42eae47ae877073a077527463beb32e251d7035 test/base/twilltestcase.py --- a/test/base/twilltestcase.py +++ b/test/base/twilltestcase.py @@ -694,11 +694,19 @@ if filename is not None: local_name = self.get_filename( filename, shed_tool_id=shed_tool_id ) temp_name = self.makeTfname(fname = filename) - file( temp_name, 'wb' ).write(data) - if self.keepOutdir > '': - ofn = os.path.join(self.keepOutdir,os.path.basename(local_name)) - shutil.copy(temp_name,ofn) - log.debug('## GALAXY_TEST_SAVE=%s. saved %s' % (self.keepOutdir,ofn)) + file( temp_name, 'wb' ).write( data ) + + # if the server's env has GALAXY_TEST_SAVE, save the output file to that dir + if self.keepOutdir: + ofn = os.path.join( self.keepOutdir, os.path.basename( local_name ) ) + try: + shutil.copy( temp_name, ofn ) + except Exception, exc: + error_log_msg = ( 'TwillTestCase could not save output file %s to %s: ' % ( temp_name, ofn ) ) + error_log_msg += str( e ) + else: + log.debug('## GALAXY_TEST_SAVE=%s. saved %s' % ( self.keepOutdir, ofn ) ) + try: # have to nest try-except in try-finally to handle 2.4 try: @@ -729,6 +737,7 @@ self.verify_extra_files_content( extra_files, elem.get( 'id' ), shed_tool_id=shed_tool_id ) except AssertionError, err: errmsg = 'History item %s different than expected, difference (using %s):\n' % ( hid, compare ) + errmsg += "( %s v. %s )\n" % ( local_name, temp_name ) errmsg += str( err ) raise AssertionError( errmsg ) finally: diff -r 7387d61dfd59ca588bb84a57272beed1bb930abb -r a42eae47ae877073a077527463beb32e251d7035 tools/ngs_rna/tophat2_wrapper.xml --- a/tools/ngs_rna/tophat2_wrapper.xml +++ b/tools/ngs_rna/tophat2_wrapper.xml @@ -296,6 +296,9 @@ </inputs><outputs> + <data format="tabular" name="fusions" label="${tool.name} on ${on_string}: fusions" from_work_dir="tophat_out/fusions.out"> + <filter>(params['fusion_search']['do_search'] == 'Yes')</filter> + </data><data format="bed" name="insertions" label="${tool.name} on ${on_string}: insertions" from_work_dir="tophat_out/insertions.bed"><actions><conditional name="refGenomeSource.genomeSource"> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. 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commit/galaxy-central: jgoecks: Cleanup for previous commit, 565476ce4f03, mainly to further comment and simplify code and avoid going to index multiple times.
by Bitbucket 15 Aug '12

15 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/24c6e925acaf/ changeset: 24c6e925acaf user: jgoecks date: 2012-08-16 00:09:48 summary: Cleanup for previous commit, 565476ce4f03, mainly to further comment and simplify code and avoid going to index multiple times. affected #: 1 file diff -r 565476ce4f0301d23538d87aeef805edc099badf -r 24c6e925acaf6b0dc8b52126ed295dcec35de2a6 lib/galaxy/visualization/tracks/data_providers.py --- a/lib/galaxy/visualization/tracks/data_providers.py +++ b/lib/galaxy/visualization/tracks/data_providers.py @@ -985,28 +985,31 @@ # To do this, need to increase end to next base and request number of points. num_points = end - start + 1 end += 1 - - result = summarize_region( bbi, chrom, start, end, num_points ) else: # # The goal is to sample the region between start and end uniformly - # using N data points. The challenge is that the size of sampled + # using ~N data points. The challenge is that the size of sampled # intervals rarely is full bases, so sampling using N points will - # leave the end of the region unsampled. To recitify this, samples - # beyond N are taken at the end of the interval. + # leave the end of the region unsampled due to remainders for each + # interval. To recitify this, a new N is calculated based on the + # step size that covers as much of the region as possible. + # + # However, this still leaves some of the region unsampled. This + # could be addressed by repeatedly sampling remainder using a + # smaller and smaller step_size, but that would require iteratively + # going to BBI, which could be time consuming. # - # Do initial summary. + # Start with N samples. num_points = N - result = summarize_region( bbi, chrom, start, end, num_points ) - - # Do summary of remaining part of region. step_size = ( end - start ) / num_points - new_start = start + step_size * num_points - new_num_points = min( ( end - new_start ) / step_size, end - start ) - if new_num_points is not 0: - result.extend( summarize_region( bbi, chrom, new_start, end, new_num_points ) ) - #TODO: progressively reduce step_size to generate more datapoints. + # Add additional points to sample in the remainder not covered by + # the initial N samples. + remainder_start = start + step_size * num_points + additional_points = ( end - remainder_start ) / step_size + num_points += additional_points + + result = summarize_region( bbi, chrom, start, end, num_points ) # Cleanup and return. f.close() Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: jgoecks: Rewrite sampling code for BBI data provider to handle (a) boundary cases during base-level resolution and (b) remainder of region not sampled during first pass.
by Bitbucket 15 Aug '12

15 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/565476ce4f03/ changeset: 565476ce4f03 user: jgoecks date: 2012-08-15 23:49:39 summary: Rewrite sampling code for BBI data provider to handle (a) boundary cases during base-level resolution and (b) remainder of region not sampled during first pass. affected #: 1 file diff -r 2531e085f2625b60135a6b4972f125e22a4fd354 -r 565476ce4f0301d23538d87aeef805edc099badf lib/galaxy/visualization/tracks/data_providers.py --- a/lib/galaxy/visualization/tracks/data_providers.py +++ b/lib/galaxy/visualization/tracks/data_providers.py @@ -947,55 +947,69 @@ return dict( data=dict( min=summary.min_val[0], max=summary.max_val[0], mean=mean, sd=sd ) ) - # The following seems not to work very well, for example it will only return one - # data point if the tile is 1280px wide. Not sure what the intent is. + # Sample from region using approximately this many samples. + N = 1000 - # The first zoom level for BBI files is 640. If too much is requested, it will look at each block instead - # of summaries. The calculation done is: zoom <> (end-start)/num_points/2. - # Thus, the optimal number of points is (end-start)/num_points/2 = 640 - # num_points = (end-start) / 1280 - #num_points = (end-start) / 1280 - #if num_points < 1: - # num_points = end - start - #else: - # num_points = min(num_points, 500) + def summarize_region( bbi, chrom, start, end, num_points ): + ''' + Returns results from summarizing a region using num_points. + NOTE: num_points cannot be greater than end - start or BBI + will return None for all positions.s + ''' + result = [] - # For now, we'll do 1000 data points by default. However, the summaries - # don't seem to work when a summary pixel corresponds to less than one - # datapoint, so we prevent that. + # Get summary; this samples at intervals of length + # (end - start)/num_points -- i.e. drops any fractional component + # of interval length. + summary = bbi.summarize( chrom, start, end, num_points ) + if summary: + #mean = summary.sum_data / summary.valid_count + + ## Standard deviation by bin, not yet used + ## var = summary.sum_squares - mean + ## var /= minimum( valid_count - 1, 1 ) + ## sd = sqrt( var ) + + pos = start + step_size = (end - start) / num_points - # FIXME: need to choose the number of points to maximize coverage of the area. - # It appears that BBI calculates points using intervals of - # floor( num_points / end - start ) - # In some cases, this prevents sampling near the end of the interval, - # especially when (a) the total interval is small ( < 20-30Kb) and (b) the - # computed interval size has a large fraction, e.g. 14.7 or 35.8 - num_points = min( 1000, end - start ) + for i in range( num_points ): + result.append( (pos, float_nan( summary.sum_data[i] / summary.valid_count[i] ) ) ) + pos += step_size - # HACK to address the FIXME above; should generalize. - if end - start <= 2000: - num_points = end - start + return result - summary = bbi.summarize( chrom, start, end, num_points ) + # Approach is different depending on region size. + if end - start < N: + # Get values for individual bases in region, including start and end. + # To do this, need to increase end to next base and request number of points. + num_points = end - start + 1 + end += 1 + + result = summarize_region( bbi, chrom, start, end, num_points ) + else: + # + # The goal is to sample the region between start and end uniformly + # using N data points. The challenge is that the size of sampled + # intervals rarely is full bases, so sampling using N points will + # leave the end of the region unsampled. To recitify this, samples + # beyond N are taken at the end of the interval. + # + + # Do initial summary. + num_points = N + result = summarize_region( bbi, chrom, start, end, num_points ) + + # Do summary of remaining part of region. + step_size = ( end - start ) / num_points + new_start = start + step_size * num_points + new_num_points = min( ( end - new_start ) / step_size, end - start ) + if new_num_points is not 0: + result.extend( summarize_region( bbi, chrom, new_start, end, new_num_points ) ) + #TODO: progressively reduce step_size to generate more datapoints. + + # Cleanup and return. f.close() - - result = [] - - if summary: - #mean = summary.sum_data / summary.valid_count - - ## Standard deviation by bin, not yet used - ## var = summary.sum_squares - mean - ## var /= minimum( valid_count - 1, 1 ) - ## sd = sqrt( var ) - - pos = start - step_size = (end - start) / num_points - - for i in range( num_points ): - result.append( (pos, float_nan( summary.sum_data[i] / summary.valid_count[i] ) ) ) - pos += step_size - return { 'data': result } class BigBedDataProvider( BBIDataProvider ): Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: greg: Improve error message handling when setting metadata on tool shed repositories. Display the repository owner in the table grid when displaying invalid tools in the tool shed.
by Bitbucket 15 Aug '12

15 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/2531e085f262/ changeset: 2531e085f262 user: greg date: 2012-08-15 20:50:38 summary: Improve error message handling when setting metadata on tool shed repositories. Display the repository owner in the table grid when displaying invalid tools in the tool shed. affected #: 4 files diff -r b99cd3b7670169d6b2723aff95c458b5448af34d -r 2531e085f2625b60135a6b4972f125e22a4fd354 lib/galaxy/webapps/community/controllers/admin.py --- a/lib/galaxy/webapps/community/controllers/admin.py +++ b/lib/galaxy/webapps/community/controllers/admin.py @@ -696,9 +696,14 @@ owner = repository_name_owner_list[ 1 ] repository = get_repository_by_name_and_owner( trans, name, owner ) try: - reset_all_metadata_on_repository( trans, trans.security.encode_id( repository.id ) ) - log.debug( "Successfully reset metadata on repository %s" % repository.name ) - successful_count += 1 + invalid_file_tups = reset_all_metadata_on_repository( trans, trans.security.encode_id( repository.id ) ) + if invalid_file_tups: + message = generate_message_for_invalid_tools( invalid_file_tups, repository, None, as_html=False ) + log.debug( message ) + unsuccessful_count += 1 + else: + log.debug( "Successfully reset metadata on repository %s" % repository.name ) + successful_count += 1 except Exception, e: log.debug( "Error attempting to reset metadata on repository '%s': %s" % ( repository.name, str( e ) ) ) unsuccessful_count += 1 diff -r b99cd3b7670169d6b2723aff95c458b5448af34d -r 2531e085f2625b60135a6b4972f125e22a4fd354 lib/galaxy/webapps/community/controllers/common.py --- a/lib/galaxy/webapps/community/controllers/common.py +++ b/lib/galaxy/webapps/community/controllers/common.py @@ -277,6 +277,41 @@ return '%s://%s%s/repos/%s/%s' % ( protocol, username, base, repository.user.username, repository.name ) else: return '%s/repos/%s/%s' % ( base_url, repository.user.username, repository.name ) +def generate_message_for_invalid_tools( invalid_file_tups, repository, metadata_dict, as_html=True ): + if as_html: + new_line = ' ' + bold_start = '' + bold_end = '' + else: + new_line = '\n' + bold_start = '' + bold_end = '' + message = '' + if metadata_dict: + message += "Metadata was defined for some items in revision '%s'. " % str( repository.tip ) + message += "Correct the following problems if necessary and reset metadata.%s" % new_line + else: + message += "Metadata cannot be defined for revision '%s' so this revision cannot be automatically " % str( repository.tip ) + message += "installed into a local Galaxy instance. Correct the following problems and reset metadata.%s" % new_line + for itc_tup in invalid_file_tups: + tool_file, exception_msg = itc_tup + if exception_msg.find( 'No such file or directory' ) >= 0: + exception_items = exception_msg.split() + missing_file_items = exception_items[ 7 ].split( '/' ) + missing_file = missing_file_items[ -1 ].rstrip( '\'' ) + if missing_file.endswith( '.loc' ): + sample_ext = '%s.sample' % missing_file + else: + sample_ext = missing_file + correction_msg = "This file refers to a missing file %s%s%s. " % ( bold_start, str( missing_file ), bold_end ) + correction_msg += "Upload a file named %s%s%s to the repository to correct this error." % ( bold_start, sample_ext, bold_end ) + else: + if as_html: + correction_msg = exception_msg + else: + correction_msg = exception_msg.replace( ' ', new_line ).replace( '', bold_start ).replace( '', bold_end ) + message += "%s%s%s - %s%s" % ( bold_start, tool_file, bold_end, correction_msg, new_line ) + return message def generate_tool_guid( trans, repository, tool ): """ Generate a guid for the received tool. The form of the guid is @@ -854,6 +889,7 @@ clean_repository_metadata( trans, id, changeset_revisions ) # Set tool version information for all downloadable changeset revisions. Get the list of changeset revisions from the changelog. reset_all_tool_versions( trans, id, repo ) + return invalid_file_tups def set_repository_metadata( trans, repository, content_alert_str='', **kwd ): """ Set metadata using the repository's current disk files, returning specific error messages (if any) to alert the repository owner that the changeset @@ -931,27 +967,7 @@ message += "be defined so this revision cannot be automatically installed into a local Galaxy instance." status = "error" if invalid_file_tups: - if metadata_dict: - message += "Metadata was defined for some items in revision '%s'. " % str( repository.tip ) - message += "Correct the following problems if necessary and reset metadata. " - else: - message += "Metadata cannot be defined for revision '%s' so this revision cannot be automatically " % str( repository.tip ) - message += "installed into a local Galaxy instance. Correct the following problems and reset metadata. " - for itc_tup in invalid_file_tups: - tool_file, exception_msg = itc_tup - if exception_msg.find( 'No such file or directory' ) >= 0: - exception_items = exception_msg.split() - missing_file_items = exception_items[ 7 ].split( '/' ) - missing_file = missing_file_items[ -1 ].rstrip( '\'' ) - if missing_file.endswith( '.loc' ): - sample_ext = '%s.sample' % missing_file - else: - sample_ext = missing_file - correction_msg = "This file refers to a missing file %s. " % str( missing_file ) - correction_msg += "Upload a file named %s to the repository to correct this error." % sample_ext - else: - correction_msg = exception_msg - message += "%s - %s " % ( tool_file, correction_msg ) + message = generate_message_for_invalid_tools( invalid_file_tups, repository, metadata_dict ) status = 'error' return message, status def set_repository_metadata_due_to_new_tip( trans, repository, content_alert_str=None, **kwd ): diff -r b99cd3b7670169d6b2723aff95c458b5448af34d -r 2531e085f2625b60135a6b4972f125e22a4fd354 lib/galaxy/webapps/community/controllers/repository.py --- a/lib/galaxy/webapps/community/controllers/repository.py +++ b/lib/galaxy/webapps/community/controllers/repository.py @@ -458,7 +458,10 @@ metadata = downloadable_revision.metadata invalid_tools = metadata.get( 'invalid_tools', [] ) for invalid_tool_config in invalid_tools: - invalid_tools_dict[ invalid_tool_config ] = ( repository.id, repository.name, downloadable_revision.changeset_revision ) + invalid_tools_dict[ invalid_tool_config ] = ( repository.id, + repository.name, + repository.user.username, + downloadable_revision.changeset_revision ) else: for repository in trans.sa_session.query( trans.model.Repository ) \ .filter( and_( trans.model.Repository.table.c.deleted == False, @@ -468,7 +471,10 @@ metadata = downloadable_revision.metadata invalid_tools = metadata.get( 'invalid_tools', [] ) for invalid_tool_config in invalid_tools: - invalid_tools_dict[ invalid_tool_config ] = ( repository.id, repository.name, downloadable_revision.changeset_revision ) + invalid_tools_dict[ invalid_tool_config ] = ( repository.id, + repository.name, + repository.user.username, + downloadable_revision.changeset_revision ) return trans.fill_template( '/webapps/community/repository/browse_invalid_tools.mako', cntrller=cntrller, invalid_tools_dict=invalid_tools_dict, @@ -1373,6 +1379,7 @@ return trans.response.send_redirect( url ) @web.expose def load_invalid_tool( self, trans, repository_id, tool_config, changeset_revision, **kwd ): + # FIXME: loading an invalid tool should display an appropriate message as to why the tool is invalid. This worked until recently. params = util.Params( kwd ) message = util.restore_text( params.get( 'message', '' ) ) status = params.get( 'status', 'error' ) @@ -1752,9 +1759,14 @@ status=status ) @web.expose def reset_all_metadata( self, trans, id, **kwd ): - reset_all_metadata_on_repository( trans, id, **kwd ) - message = "All repository metadata has been reset." - status = 'done' + invalid_file_tups = reset_all_metadata_on_repository( trans, id, **kwd ) + if invalid_file_tups: + repository = get_repository( trans, id ) + message = generate_message_for_invalid_tools( invalid_file_tups, repository, None ) + status = 'error' + else: + message = "All repository metadata has been reset." + status = 'done' return trans.response.send_redirect( web.url_for( controller='repository', action='manage_repository', id=id, diff -r b99cd3b7670169d6b2723aff95c458b5448af34d -r 2531e085f2625b60135a6b4972f125e22a4fd354 templates/webapps/community/repository/browse_invalid_tools.mako --- a/templates/webapps/community/repository/browse_invalid_tools.mako +++ b/templates/webapps/community/repository/browse_invalid_tools.mako @@ -13,10 +13,11 @@ <tr><th>Tool config</th><th>Repository name</th> + <th>Repository owner</th><th>Changeset revision</th></tr> %for invalid_tool_config, repository_tup in invalid_tools_dict.items(): - <% repository_id, repository_name, changeset_revision = repository_tup %> + <% repository_id, repository_name, repository_owner, changeset_revision = repository_tup %><tr><td><a class="view-info" href="${h.url_for( controller='repository', action='load_invalid_tool', repository_id=trans.security.encode_id( repository_id ), tool_config=invalid_tool_config, changeset_revision=changeset_revision, webapp=webapp )}"> @@ -24,6 +25,7 @@ </a></td><td>${repository_name}</td> + <td>${repository_owner}</td><td>${changeset_revision}</td></tr> %endfor Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. 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commit/galaxy-central: greg: Fix for setting tooll dependency metadata where at least one tool in the repository does not include a <requirements> tag set.
by Bitbucket 15 Aug '12

15 Aug '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/b99cd3b76701/ changeset: b99cd3b76701 user: greg date: 2012-08-15 17:55:17 summary: Fix for setting tooll dependency metadata where at least one tool in the repository does not include a <requirements> tag set. affected #: 2 files diff -r 01ed2f462dd7709876458b031d786d277d1f72f3 -r b99cd3b7670169d6b2723aff95c458b5448af34d lib/galaxy/util/shed_util.py --- a/lib/galaxy/util/shed_util.py +++ b/lib/galaxy/util/shed_util.py @@ -533,7 +533,7 @@ if req_name==tool_dependency_name and req_version==tool_dependency_version and req_type==tool_dependency_type: can_generate_dependency_metadata = True break - if not can_generate_dependency_metadata: + if requirements and not can_generate_dependency_metadata: # We've discovered at least 1 combination of name, version and type that is not defined in the <requirement> # tag for any tool in the repository. break diff -r 01ed2f462dd7709876458b031d786d277d1f72f3 -r b99cd3b7670169d6b2723aff95c458b5448af34d lib/galaxy/webapps/community/config.py --- a/lib/galaxy/webapps/community/config.py +++ b/lib/galaxy/webapps/community/config.py @@ -87,6 +87,7 @@ self.server_name = '' self.job_manager = '' self.default_job_handlers = [] + self.default_cluster_job_runner = 'local:///' self.job_handlers = [] self.tool_handlers = [] self.tool_runners = [] Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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