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commit/galaxy-central: 2 new changesets
by Bitbucket 06 Jan '12

06 Jan '12

2 new commits in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/ea42944229df/ changeset: ea42944229df user: jgoecks date: 2012-01-06 17:30:04 summary: Trackster: ensure all visible composite track tiles have the same height so that line tracks are rendered correctly. affected #: 1 file diff -r 85075ee87e1630104ee66f45e77ab2af2d28941c -r ea42944229df83e5db5227af945232ca564db6d5 static/scripts/trackster.js --- a/static/scripts/trackster.js +++ b/static/scripts/trackster.js @@ -3144,11 +3144,14 @@ * Retrieves from cache, draws, or sets up drawing for a single tile. Returns either a Tile object or a * jQuery.Deferred object that is fulfilled when tile can be drawn again. */ - draw_helper: function(force, width, tile_index, resolution, parent_element, w_scale, more_tile_data) { + draw_helper: function(force, width, tile_index, resolution, parent_element, w_scale, kwargs) { var track = this, key = this._gen_tile_cache_key(width, w_scale, tile_index), tile_low = tile_index * DENSITY * resolution, tile_high = tile_low + DENSITY * resolution; + + // Init kwargs if necessary to avoid having to check if kwargs defined. + if (!kwargs) { kwargs = {}; } // Check tile cache, if found show existing tile in correct position var tile = (force ? undefined : track.tile_cache.get(key)); @@ -3178,7 +3181,7 @@ // If we can draw now, do so. if ( can_draw_now ) { // Set up and draw tile. - extend(tile_data, more_tile_data); + extend(tile_data, kwargs[ 'more_tile_data' ] ); // HACK: this is FeatureTrack-specific. // If track mode is Auto, determine mode and update. @@ -3459,12 +3462,15 @@ this.action_icons.tools_icon.hide(); }, can_draw: Drawable.prototype.can_draw, - draw_helper: function(force, width, tile_index, resolution, parent_element, w_scale, more_tile_data) { + draw_helper: function(force, width, tile_index, resolution, parent_element, w_scale, kwargs) { // FIXME: this function is similar to TiledTrack.draw_helper -- can the two be merged/refactored? var track = this, key = this._gen_tile_cache_key(width, w_scale, tile_index), tile_low = tile_index * DENSITY * resolution, tile_high = tile_low + DENSITY * resolution; + + // Init kwargs if necessary to avoid having to check if kwargs defined. + if (!kwargs) { kwargs = {}; } // Check tile cache, if found show existing tile in correct position var tile = (force ? undefined : track.tile_cache.get(key)); @@ -3503,7 +3509,7 @@ // If we can draw now, do so. if ( can_draw_now ) { // Set up and draw tile. - extend(tile_data, more_tile_data); + extend(tile_data, kwargs[ 'more_tile_data' ] ); this.tile_predraw_init(); @@ -3517,7 +3523,7 @@ height = 0, track_modes = []; - // Set height to be the max height for all tracks. Also, record track modes. + // Get max height for all tracks and record track modes. var track_canvas_height = 0; for (var i = 0; i < this.drawables.length; i++, all_data_index += 2) { track = this.drawables[i]; @@ -3536,9 +3542,12 @@ if (track_canvas_height > height) { height = track_canvas_height; } } + // // Draw all tracks on a single tile. + // canvas.width = width; - canvas.height = height; + // Height is specified in kwargs or is the height found above. + canvas.height = (kwargs['height'] ? kwargs['height'] : height); all_data_index = 0; var ctx = canvas.getContext('2d'); ctx.translate(this.left_offset, 0); @@ -3605,7 +3614,22 @@ postdraw_actions: function(tiles, width, w_scale, clear_after) { TiledTrack.prototype.postdraw_actions.call(this, tiles, width, w_scale, clear_after); - // TODO: all tiles must be the same size in order to draw LineTracks. + // All tiles must be the same height in order to draw LineTracks, so redraw tiles as needed. + var max_height = -1; + for (var i = 0; i < tiles.length; i++) { + var height = tiles[i].html_elt.find("canvas").height(); + if (height > max_height) { + max_height = height; + } + } + + for (var i = 0; i < tiles.length; i++) { + var tile = tiles[i]; + if (tile.html_elt.find("canvas").height() !== max_height) { + this.draw_helper(true, width, tile.index, tile.resolution, tile.html_elt.parent(), w_scale, { height: max_height } ); + tile.html_elt.remove(); + } + } } }); @@ -3905,7 +3929,7 @@ var tile = tiles[i]; if (tile.max_val !== global_max) { tile.html_elt.remove(); - track.draw_helper(true, width, tile.index, tile.resolution, tile.html_elt.parent(), w_scale, { max: global_max }); + track.draw_helper(true, width, tile.index, tile.resolution, tile.html_elt.parent(), w_scale, { more_tile_data: { max: global_max } } ); } } } https://bitbucket.org/galaxy/galaxy-central/changeset/24b1918b7a8a/ changeset: 24b1918b7a8a user: jgoecks date: 2012-01-06 17:41:15 summary: Trackster: update criteria for allowing composite tracks; any number of line tracks and a feature track can now be composited. affected #: 1 file diff -r ea42944229df83e5db5227af945232ca564db6d5 -r 24b1918b7a8a50482d210d84b76ef7e2071efba1 static/scripts/trackster.js --- a/static/scripts/trackster.js +++ b/static/scripts/trackster.js @@ -1061,33 +1061,26 @@ // Determine if a composite track can be created. Current criteria: // (a) all tracks are the same; // OR - // (b) there is a LineTrack and a FeatureTrack. + // (b) there is a single FeatureTrack. // /// All tracks the same? - var can_composite = true, - a_type = this.drawables[0].get_type(); + var drawable, + same_type = true, + a_type = this.drawables[0].get_type(), + num_feature_tracks = 0; for (var i = 0; i < this.drawables.length; i++) { - if ( this.drawables[i].get_type() !== a_type ) { + drawable = this.drawables[i] + if (drawable.get_type() !== a_type) { can_composite = false; break; } + if (drawable instanceof FeatureTrack) { + num_feature_tracks++; + } } - if (!can_composite) { - if ( this.drawables.length == 2 && - ( - (this.drawables[0] instanceof FeatureTrack && - this.drawables[1] instanceof LineTrack) - || - (this.drawables[0] instanceof LineTrack && - this.drawables[1] instanceof FeatureTrack) - ) - ) - can_composite = true; - } - - if (can_composite) { + if (same_type || num_feature_tracks === 1) { this.action_icons.composite_icon.show(); } else { Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. 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commit/galaxy-central: jgoecks: Trackster: enable composite tracks composed of a FeatureTrack and LineTrack. Refactor to always handle left_offset only in draw_helper.
by Bitbucket 06 Jan '12

06 Jan '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/85075ee87e16/ changeset: 85075ee87e16 user: jgoecks date: 2012-01-06 01:46:49 summary: Trackster: enable composite tracks composed of a FeatureTrack and LineTrack. Refactor to always handle left_offset only in draw_helper. affected #: 1 file diff -r 999dc276912c8beda98b0a978d2ad945bd13c726 -r 85075ee87e1630104ee66f45e77ab2af2d28941c static/scripts/trackster.js --- a/static/scripts/trackster.js +++ b/static/scripts/trackster.js @@ -1057,7 +1057,14 @@ this.request_draw(); }, update_icons: function() { - // Only show composite icon if all tracks are the same type. + // + // Determine if a composite track can be created. Current criteria: + // (a) all tracks are the same; + // OR + // (b) there is a LineTrack and a FeatureTrack. + // + + /// All tracks the same? var can_composite = true, a_type = this.drawables[0].get_type(); for (var i = 0; i < this.drawables.length; i++) { @@ -1067,13 +1074,26 @@ } } + if (!can_composite) { + if ( this.drawables.length == 2 && + ( + (this.drawables[0] instanceof FeatureTrack && + this.drawables[1] instanceof LineTrack) + || + (this.drawables[0] instanceof LineTrack && + this.drawables[1] instanceof FeatureTrack) + ) + ) + can_composite = true; + } + if (can_composite) { this.action_icons.composite_icon.show(); } else { this.action_icons.composite_icon.hide(); $(".tipsy").remove(); - } + } }, /** * Add composite track to group that includes all of group's tracks. @@ -2930,7 +2950,8 @@ // Create copy. var new_track = new this.constructor(this.name, this.view, container, this.hda_ldda, this.dataset_id, this.prefs, this.filters, this.tool, this.data_manager); - // Misc. init and return. + // Misc. init and return. + new_track.change_mode(this.mode); new_track.enabled = this.enabled; return new_track; }, @@ -3178,7 +3199,9 @@ canvas.width = width; canvas.height = height; - var tile = track.draw_tile(tile_data, canvas, mode, resolution, tile_index, w_scale, seq_data); + var ctx = canvas.getContext('2d'); + ctx.translate(this.left_offset, 0); + var tile = track.draw_tile(tile_data, ctx, mode, resolution, tile_index, w_scale, seq_data); // Don't cache, show if no tile. if (tile !== undefined) { @@ -3208,14 +3231,14 @@ /** * Draw a track tile. * @param result result from server - * @param canvas canvas to draw on + * @param ctx canvas context to draw on * @param mode mode to draw in * @param resolution view resolution * @param tile_index index of tile to be drawn * @param w_scale pixels per base * @param ref_seq reference sequence data */ - draw_tile: function(result, canvas, mode, resolution, tile_index, w_scale, ref_seq) { + draw_tile: function(result, ctx, mode, resolution, tile_index, w_scale, ref_seq) { console.log("Warning: TiledTrack.draw_tile() not implemented."); }, /** @@ -3356,12 +3379,13 @@ var CompositeTrack = function(name, view, container, drawables) { // HACK: modes should be static class vars for most tracks and should update as // needed for CompositeTracks - this.display_modes = ["Histogram", "Line", "Filled", "Intensity"]; + this.display_modes = drawables[0].display_modes; TiledTrack.call(this, name, view, container); // Init drawables; each drawable is a copy so that config/preferences - // are independent of each other. + // are independent of each other. Also init left offset. this.drawables = []; + this.left_offset = 0; if (drawables) { var ids = [], @@ -3370,6 +3394,11 @@ drawable = drawables[i]; ids.push(drawable.dataset_id); this.drawables[i] = drawable.copy(); + + // Track's left offset is the max of all tracks. + if (drawable.left_offset > this.left_offset) { + this.left_offset = drawable.left_offset; + } } this.enabled = true; } @@ -3483,24 +3512,46 @@ tile_bounds = track._get_tile_bounds(tile_index, resolution), tile_low = tile_bounds[0], tile_high = tile_bounds[1], - width = Math.ceil( (tile_high - tile_low) * w_scale ), - // FIXME: need to set height to be max for all tracks. - height = track.get_canvas_height(tile_data, track.mode, w_scale, width); + all_data_index = 0, + width = Math.ceil( (tile_high - tile_low) * w_scale ) + this.left_offset, + height = 0, + track_modes = []; + + // Set height to be the max height for all tracks. Also, record track modes. + var track_canvas_height = 0; + for (var i = 0; i < this.drawables.length; i++, all_data_index += 2) { + track = this.drawables[i]; + tile_data = all_data[ all_data_index ]; + + // HACK: this is FeatureTrack-specific. + // If track mode is Auto, determine mode and update. + var mode = track.mode; + if (mode === "Auto") { + mode = track.get_mode(tile_data); + track.update_auto_mode(mode); + } + track_modes.push(mode) + + track_canvas_height = track.get_canvas_height(tile_data, mode, w_scale, width); + if (track_canvas_height > height) { height = track_canvas_height; } + } // Draw all tracks on a single tile. canvas.width = width; canvas.height = height; - var all_data_index = 0 + all_data_index = 0; + var ctx = canvas.getContext('2d'); + ctx.translate(this.left_offset, 0); for (var i = 0; i < this.drawables.length; i++, all_data_index += 2) { track = this.drawables[i]; tile_data = all_data[ all_data_index ]; seq_data = all_data[ all_data_index + 1 ]; - tile = track.draw_tile(tile_data, canvas, track.mode, resolution, tile_index, w_scale, seq_data); + tile = track.draw_tile(tile_data, ctx, track_modes[i], resolution, tile_index, w_scale, seq_data); } // Don't cache, show if no tile. - track.tile_cache.set(key, tile); - track.show_tile(tile, parent_element, w_scale); + this.tile_cache.set(key, tile); + this.show_tile(tile, parent_element, w_scale); return tile; } @@ -3546,6 +3597,15 @@ track.prefs.min_value = min; track.prefs.max_value = max; } + }, + /** + * Actions to be taken after draw has been completed. Draw is completed when all tiles have been + * drawn/fetched and shown. + */ + postdraw_actions: function(tiles, width, w_scale, clear_after) { + TiledTrack.prototype.postdraw_actions.call(this, tiles, width, w_scale, clear_after); + + // TODO: all tiles must be the same size in order to draw LineTracks. } }); @@ -3573,7 +3633,7 @@ /** * Draw ReferenceTrack tile. */ - draw_tile: function(seq, canvas, mode, resolution, tile_index, w_scale) { + draw_tile: function(seq, ctx, mode, resolution, tile_index, w_scale) { var track = this; if (w_scale > this.view.canvas_manager.char_width_px) { @@ -3581,7 +3641,7 @@ track.content_div.css("height", "0px"); return; } - var ctx = canvas.getContext("2d"); + var canvas = ctx.canvas; ctx.font = ctx.canvas.manager.default_font; ctx.textAlign = "center"; seq = seq.data; @@ -3720,7 +3780,7 @@ /** * Draw LineTrack tile. */ - draw_tile: function(result, canvas, mode, resolution, tile_index, w_scale) { + draw_tile: function(result, ctx, mode, resolution, tile_index, w_scale) { // FIXME: is this needed? if (this.vertical_range === undefined) { return; @@ -3728,7 +3788,7 @@ // Paint onto canvas. var - ctx = canvas.getContext("2d"), + canvas = ctx.canvas, tile_bounds = this._get_tile_bounds(tile_index, resolution), tile_low = tile_bounds[0], tile_high = tile_bounds[1], @@ -4057,15 +4117,16 @@ /** * Draw FeatureTrack tile. * @param result result from server - * @param canvas canvas to draw on + * @param cxt canvas context to draw on * @param mode mode to draw in * @param resolution view resolution * @param tile_index index of tile to be drawn * @param w_scale pixels per base * @param ref_seq reference sequence data */ - draw_tile: function(result, canvas, mode, resolution, tile_index, w_scale, ref_seq) { + draw_tile: function(result, ctx, mode, resolution, tile_index, w_scale, ref_seq) { var track = this, + canvas = ctx.canvas, tile_bounds = this._get_tile_bounds(tile_index, resolution), tile_low = tile_bounds[0], tile_high = tile_bounds[1], @@ -4092,9 +4153,9 @@ } // Paint summary tree into canvas var painter = new painters.SummaryTreePainter(result, tile_low, tile_high, this.prefs); - var ctx = canvas.getContext("2d"); - // Deal with left_offset by translating. - ctx.translate(left_offset, SUMMARY_TREE_TOP_PADDING); + // FIXME: it shouldn't be necessary to build in padding. + ctx.translate(0, SUMMARY_TREE_TOP_PADDING); + ctx.globalCompositeOperation = "darker"; painter.draw(ctx, canvas.width, canvas.height, w_scale); return new SummaryTreeTile(track, tile_index, resolution, canvas, result.data, result.max); } @@ -4131,7 +4192,7 @@ var feature_mapper = null; // console.log(( tile_low - this.view.low ) * w_scale, tile_index, w_scale); - var ctx = canvas.getContext("2d"); + ctx.globalCompositeOperation = "darker"; ctx.fillStyle = this.prefs.block_color; ctx.font = ctx.canvas.manager.default_font; ctx.textAlign = "right"; @@ -4140,7 +4201,6 @@ if (result.data) { // Draw features. slots = this.inc_slots[w_scale].slots; - ctx.translate(left_offset, 0); feature_mapper = painter.draw(ctx, canvas.width, canvas.height, w_scale, slots); feature_mapper.translation = -left_offset; } Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. 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commit/galaxy-central: greg: Fixes and enhancements for supporting tool shed repositories that include data types that use class modules included in the repository. More than 1 class modules can now be included in the repository.
by Bitbucket 05 Jan '12

05 Jan '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/4d131422777f/ changeset: 4d131422777f user: greg date: 2012-01-05 18:24:45 summary: Fixes and enhancements for supporting tool shed repositories that include data types that use class modules included in the repository. More than 1 class modules can now be included in the repository. affected #: 4 files diff -r 82af6b933a0af1c4af0958aa378af846e7efc449 -r 4d131422777f436f3b3eebfc7a9f61cec61810b1 lib/galaxy/app.py --- a/lib/galaxy/app.py +++ b/lib/galaxy/app.py @@ -71,7 +71,7 @@ # Manage installed tool shed repositories self.installed_repository_manager = galaxy.tool_shed.InstalledRepositoryManager( self ) # Add additional datatypes from installed tool shed repositories to the datatypes registry. - self.installed_repository_manager.load_datatypes() + self.installed_repository_manager.load_proprietary_datatypes() # Load datatype converters self.datatypes_registry.load_datatype_converters( self.toolbox ) # Load history import/export tools diff -r 82af6b933a0af1c4af0958aa378af846e7efc449 -r 4d131422777f436f3b3eebfc7a9f61cec61810b1 lib/galaxy/datatypes/registry.py --- a/lib/galaxy/datatypes/registry.py +++ b/lib/galaxy/datatypes/registry.py @@ -36,7 +36,7 @@ self.datatype_elems = [] self.sniffer_elems = [] self.xml_filename = None - def load_datatypes( self, root_dir=None, config=None, imported_module=None ): + def load_datatypes( self, root_dir=None, config=None, imported_modules=None ): if root_dir and config: inherit_display_application_by_class = [] # Parse datatypes_conf.xml @@ -81,8 +81,11 @@ fields = dtype.split( ':' ) datatype_module = fields[0] datatype_class_name = fields[1] - if imported_module: - datatype_class = getattr( imported_module, datatype_class_name ) + if imported_modules: + for imported_module in imported_modules: + if hasattr( imported_module, datatype_class_name ): + datatype_class = getattr( imported_module, datatype_class_name ) + break else: fields = datatype_module.split( '.' ) module = __import__( fields.pop(0) ) diff -r 82af6b933a0af1c4af0958aa378af846e7efc449 -r 4d131422777f436f3b3eebfc7a9f61cec61810b1 lib/galaxy/tool_shed/__init__.py --- a/lib/galaxy/tool_shed/__init__.py +++ b/lib/galaxy/tool_shed/__init__.py @@ -2,6 +2,7 @@ Classes encapsulating the management of repositories installed from Galaxy tool sheds. """ import os, logging +from galaxy.util.shed_util import load_datatypes from galaxy.model.orm import * log = logging.getLogger(__name__) @@ -11,13 +12,16 @@ self.app = app self.model = self.app.model self.sa_session = self.model.context.current - def load_datatypes( self ): + def load_proprietary_datatypes( self ): for tool_shed_repository in self.sa_session.query( self.model.ToolShedRepository ) \ .filter( and_( self.model.ToolShedRepository.table.c.includes_datatypes==True, self.model.ToolShedRepository.table.c.deleted==False ) ) \ .order_by( self.model.ToolShedRepository.table.c.id ): metadata = tool_shed_repository.metadata datatypes_config = metadata[ 'datatypes_config' ] - full_path = os.path.abspath( datatypes_config ) - self.app.datatypes_registry.load_datatypes( self.app.config.root, full_path ) + # We need the repository installation directory, which we can get from the path to the datatypes config. + path_items = datatypes_config.split( 'repos' ) + relative_install_dir = '%srepos/%s/%s/%s' % \ + ( path_items[0], tool_shed_repository.owner, tool_shed_repository.name, tool_shed_repository.installed_changeset_revision ) + load_datatypes( self.app, datatypes_config, relative_install_dir ) \ No newline at end of file diff -r 82af6b933a0af1c4af0958aa378af846e7efc449 -r 4d131422777f436f3b3eebfc7a9f61cec61810b1 lib/galaxy/util/shed_util.py --- a/lib/galaxy/util/shed_util.py +++ b/lib/galaxy/util/shed_util.py @@ -1,4 +1,4 @@ -import os, tempfile, shutil, subprocess, logging +import os, sys, tempfile, shutil, subprocess, threading, logging from datetime import date, datetime, timedelta from time import strftime from galaxy import util @@ -439,14 +439,20 @@ error = tmp_stderr.read() tmp_stderr.close() log.debug( 'Problem installing dependencies for tool "%s"\n%s' % ( repository_tool.name, error ) ) -def load_datatypes( app, datatypes_config, relative_intall_dir ): +def load_datatypes( app, datatypes_config, relative_install_dir ): # This method is used by the InstallManager, which does not have access to trans. - imported_module = None + def __import_module( relative_path, datatype_module ): + sys.path.insert( 0, relative_path ) + imported_module = __import__( datatype_module ) + sys.path.pop( 0 ) + return imported_module + imported_modules = [] # Parse datatypes_config. tree = util.parse_xml( datatypes_config ) datatypes_config_root = tree.getroot() relative_path_to_datatype_file_name = None datatype_files = datatypes_config_root.find( 'datatype_files' ) + datatype_class_modules = [] if datatype_files: # Currently only a single datatype_file is supported. For example: # <datatype_files> @@ -456,40 +462,47 @@ datatype_file_name = elem.get( 'name', None ) if datatype_file_name: # Find the file in the installed repository. - for root, dirs, files in os.walk( relative_intall_dir ): + for root, dirs, files in os.walk( relative_install_dir ): if root.find( '.hg' ) < 0: for name in files: if name == datatype_file_name: - relative_path_to_datatype_file_name = os.path.join( root, name ) + datatype_class_modules.append( os.path.join( root, name ) ) break break - if relative_path_to_datatype_file_name: - relative_head, relative_tail = os.path.split( relative_path_to_datatype_file_name ) - registration = datatypes_config_root.find( 'registration' ) - # Get the module by parsing the <datatype> tag. - for elem in registration.findall( 'datatype' ): - # A 'type' attribute is currently required. The attribute - # should be something like: type="gmap:GmapDB". - dtype = elem.get( 'type', None ) - if dtype: - fields = dtype.split( ':' ) - datatype_module = fields[0] - datatype_class_name = fields[1] - # Since we currently support only a single datatype_file, - # we have what we need. - break - try: - sys.path.insert( 0, relative_head ) - imported_module = __import__( datatype_module ) - sys.path.pop( 0 ) - except Exception, e: - log.debug( "Exception importing datatypes code file included in installed repository: %s" % str( e ) ) + if datatype_class_modules: + for relative_path_to_datatype_file_name in datatype_class_modules: + relative_head, relative_tail = os.path.split( relative_path_to_datatype_file_name ) + registration = datatypes_config_root.find( 'registration' ) + # Get the module by parsing the <datatype> tag. + for elem in registration.findall( 'datatype' ): + # A 'type' attribute is currently required. The attribute + # should be something like one of the following: + # type="gmap:GmapDB" + # type="galaxy.datatypes.gmap:GmapDB" + dtype = elem.get( 'type', None ) + if dtype: + fields = dtype.split( ':' ) + datatype_module = fields[ 0 ] + if datatype_module.find( '.' ) >= 0: + # Handle the case where datatype_module is "galaxy.datatypes.gmap" + datatype_module = datatype_module.split( '.' )[ -1 ] + datatype_class_name = fields[ 1 ] + # We need to change the value of sys.path, so do it in a way that is thread-safe. + lock = threading.Lock() + lock.acquire( True ) + try: + imported_module = __import_module( relative_head, datatype_module ) + imported_modules.append( imported_module ) + except Exception, e: + log.debug( "Exception importing datatypes code file %s: %s" % ( str( relative_path_to_datatype_file_name ), str( e ) ) ) + finally: + lock.release() else: - # The repository includes a datayptes_conf.xml file, but no code file that + # The repository includes a dataypes_conf.xml file, but no code file that # contains data type classes. This implies that the data types in datayptes_conf.xml # are all subclasses of data types that are in the distribution. - imported_module = None - app.datatypes_registry.load_datatypes( root_dir=app.config.root, config=datatypes_config, imported_module=imported_module ) + imported_modules = [] + app.datatypes_registry.load_datatypes( root_dir=app.config.root, config=datatypes_config, imported_modules=imported_modules ) def load_repository_contents( app, name, description, owner, changeset_revision, tool_path, repository_clone_url, relative_install_dir, current_working_dir, tmp_name, tool_section=None, shed_tool_conf=None, new_install=True ): # This method is used by the InstallManager, which does not have access to trans. Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: jgoecks: Handle NaN values to produce correct JSON in data providers.
by Bitbucket 05 Jan '12

05 Jan '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/82af6b933a0a/ changeset: 82af6b933a0a user: jgoecks date: 2012-01-05 00:01:04 summary: Handle NaN values to produce correct JSON in data providers. affected #: 1 file diff -r f46d856dc0db590109a59fbdddf892ddc8785679 -r 82af6b933a0af1c4af0958aa378af846e7efc449 lib/galaxy/visualization/tracks/data_providers.py --- a/lib/galaxy/visualization/tracks/data_providers.py +++ b/lib/galaxy/visualization/tracks/data_providers.py @@ -3,7 +3,7 @@ """ import sys, time -from math import ceil, log, sqrt +from math import ceil, log, sqrt, isnan import pkg_resources pkg_resources.require( "bx-python" ) if sys.version_info[:2] == (2, 4): @@ -1041,13 +1041,21 @@ # Add filter data to payload. for col in filter_cols: if col == "Score": - try: - payload.append( float( feature.score ) ) + try: + f = float( feature.score ) + if not math.isnan( f ): + payload.append( f ) + else: + payload.append( feature.score ) except: payload.append( feature.score ) elif col in feature.attributes: try: - payload.append( float( feature.attributes[col] ) ) + f = float( feature.attributes[col] ) + if not math.isnan( f ): + payload.append( f ) + else: + payload.append( feature.attributes[col] ) except: # Feature is not a float. payload.append( feature.attributes[col] ) Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: jgoecks: Trackster: clear track content during initialization.
by Bitbucket 04 Jan '12

04 Jan '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/f46d856dc0db/ changeset: f46d856dc0db user: jgoecks date: 2012-01-04 20:27:28 summary: Trackster: clear track content during initialization. affected #: 1 file diff -r 705eef780e7255775fe9fed93ff0e1339e59b6ad -r f46d856dc0db590109a59fbdddf892ddc8785679 static/scripts/trackster.js --- a/static/scripts/trackster.js +++ b/static/scripts/trackster.js @@ -2825,6 +2825,8 @@ track.content_div.text(DATA_LOADING); } */ + // Remove old track content (e.g. tiles, messages). + track.content_div.children().remove(); track.container_div.removeClass("nodata error pending"); // Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: jgoecks: Usability improvements: (a) standardize and simplify language for using visualizations; (b) new icon for adding datasets to trackster; and (c) simpler UI for adding dataset to new/saved visualization.
by Bitbucket 03 Jan '12

03 Jan '12

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/705eef780e72/ changeset: 705eef780e72 user: jgoecks date: 2012-01-03 21:25:40 summary: Usability improvements: (a) standardize and simplify language for using visualizations; (b) new icon for adding datasets to trackster; and (c) simpler UI for adding dataset to new/saved visualization. affected #: 9 files diff -r 04967fa31a177c16286cd742f1635ffc64a997e8 -r 705eef780e7255775fe9fed93ff0e1339e59b6ad static/images/silk/chart_curve.png Binary file static/images/silk/chart_curve.png has changed diff -r 04967fa31a177c16286cd742f1635ffc64a997e8 -r 705eef780e7255775fe9fed93ff0e1339e59b6ad static/june_2007_style/base.css.tmpl --- a/static/june_2007_style/base.css.tmpl +++ b/static/june_2007_style/base.css.tmpl @@ -893,10 +893,6 @@ -sprite-group: fugue; -sprite-image: fugue/sticky-note-text.png; } -.icon-button.vis-chart { - -sprite-group: fugue; - -sprite-image: fugue/chart.png; -} .icon-button.go-to-full-screen { -sprite-group: fugue; -sprite-image: fugue/external.png; @@ -914,6 +910,10 @@ -sprite-image: fugue/gear.png; } +.icon-button.chart_curve { + background: url(../images/silk/chart_curve.png) no-repeat; +} + .tipsy { padding: 5px; font-size: 10px; diff -r 04967fa31a177c16286cd742f1635ffc64a997e8 -r 705eef780e7255775fe9fed93ff0e1339e59b6ad static/june_2007_style/blue/base.css --- a/static/june_2007_style/blue/base.css +++ b/static/june_2007_style/blue/base.css @@ -161,7 +161,7 @@ .icon-button.disk{background:url(fugue.png) no-repeat 0px -208px;} .icon-button.information{background:url(fugue.png) no-repeat 0px -234px;} .icon-button.annotate{background:url(fugue.png) no-repeat 0px -260px;} -.icon-button.vis-chart{background:url(fugue.png) no-repeat 0px -286px;} +.icon-button.chart_curve{background:url(../images/silk/chart_curve.png) no-repeat;} .icon-button.go-to-full-screen{background:url(fugue.png) no-repeat 0px -312px;} .icon-button.import{background:url(fugue.png) no-repeat 0px -338px;} .icon-button.plus-button{background:url(fugue.png) no-repeat 0px -364px;} diff -r 04967fa31a177c16286cd742f1635ffc64a997e8 -r 705eef780e7255775fe9fed93ff0e1339e59b6ad static/june_2007_style/blue/trackster.css --- a/static/june_2007_style/blue/trackster.css +++ b/static/june_2007_style/blue/trackster.css @@ -89,7 +89,6 @@ .icon{display:inline-block;width:16px;height:16px;} .icon.more-down{background:url('../images/fugue/arrow-transition-270-bw.png') no-repeat 0px 0px;} .icon.more-across{background:url('../images/fugue/arrow-transition-bw.png') no-repeat 0px 0px;} -.intro{padding:1em;} -.intro > .action-button{background-color:#CCC;padding:1em;} +.intro > .action-button{margin:1em;padding:1em;text-decoration:underline;} .feature-popup{position:absolute;z-index:1000;padding:5px;font-size:10px;filter:alpha(opacity=80);background-repeat:no-repeat;background-image:url(../images/tipsy.gif);background-position:top center;} .feature-popup-inner{padding:5px 8px 4px 8px;background-color:black;color:white;} \ No newline at end of file diff -r 04967fa31a177c16286cd742f1635ffc64a997e8 -r 705eef780e7255775fe9fed93ff0e1339e59b6ad static/june_2007_style/trackster.css.tmpl --- a/static/june_2007_style/trackster.css.tmpl +++ b/static/june_2007_style/trackster.css.tmpl @@ -422,14 +422,11 @@ .icon.more-across { background: url('../images/fugue/arrow-transition-bw.png') no-repeat 0px 0px; } -.intro { - padding: 1em; -} .intro > .action-button { background-color: #CCC; padding: 1em; + text-decoration:underline; } - .feature-popup { position: absolute; z-index: 1000; diff -r 04967fa31a177c16286cd742f1635ffc64a997e8 -r 705eef780e7255775fe9fed93ff0e1339e59b6ad templates/root/history.mako --- a/templates/root/history.mako +++ b/templates/root/history.mako @@ -244,17 +244,27 @@ error: function() { alert( "Could not add this dataset to browser." ); }, success: function(table_html) { var parent = window.parent; - parent.show_modal("Add to Browser:", table_html, { + + parent.show_modal("View Data in a New or Saved Visualization", "", { "Cancel": function() { parent.hide_modal(); }, - "Insert into selected": function() { - $(parent.document).find('input[name=id]:checked').each(function() { - var vis_id = $(this).val(); - parent.location = dataset_jquery.attr("action-url") + "&id=" + vis_id; + "View in saved visualization": function() { + // Show new modal with saved visualizations. + parent.hide_modal(); + parent.show_modal("Add Data to Saved Visualization", table_html, { + "Cancel": function() { + parent.hide_modal(); + }, + "Add to visualization": function() { + $(parent.document).find('input[name=id]:checked').each(function() { + var vis_id = $(this).val(); + parent.location = dataset_jquery.attr("action-url") + "&id=" + vis_id; + }); + }, }); }, - "Insert into new browser": function() { + "View in new visualization": function() { parent.location = dataset_jquery.attr("new-url"); } }); diff -r 04967fa31a177c16286cd742f1635ffc64a997e8 -r 705eef780e7255775fe9fed93ff0e1339e59b6ad templates/root/history_common.mako --- a/templates/root/history_common.mako +++ b/templates/root/history_common.mako @@ -220,9 +220,9 @@ else: data_url = h.url_for( controller='tracks', action='list_tracks' ) %> - <a data-url="${data_url}" class="icon-button vis-chart tooltip trackster-add" + <a data-url="${data_url}" class="icon-button chart_curve tooltip trackster-add" action-url="${h.url_for( controller='tracks', action='browser', dataset_id=dataset_id)}" - new-url="${h.url_for( controller='tracks', action='index', dataset_id=dataset_id, default_dbkey=data.dbkey)}" title="Visualize in Trackster"></a> + new-url="${h.url_for( controller='tracks', action='index', dataset_id=dataset_id, default_dbkey=data.dbkey)}" title="View in Trackster"></a> %endif %if trans.user: %if not display_structured: diff -r 04967fa31a177c16286cd742f1635ffc64a997e8 -r 705eef780e7255775fe9fed93ff0e1339e59b6ad templates/tracks/browser.mako --- a/templates/tracks/browser.mako +++ b/templates/tracks/browser.mako @@ -187,7 +187,7 @@ data: {}, error: function() { alert( "Couldn't create new browser" ) }, success: function(form_html) { - show_modal("New Track Browser", form_html, { + show_modal("New Visualization", form_html, { "Cancel": function() { window.location = "${h.url_for( controller='visualization', action='list' )}"; }, "Continue": function() { $(document).trigger("convert_to_values"); continue_fn(); } }); diff -r 04967fa31a177c16286cd742f1635ffc64a997e8 -r 705eef780e7255775fe9fed93ff0e1339e59b6ad templates/webapps/galaxy/base_panels.mako --- a/templates/webapps/galaxy/base_panels.mako +++ b/templates/webapps/galaxy/base_panels.mako @@ -98,7 +98,7 @@ %if app.config.get_bool( 'enable_tracks', False ): <% menu_options = [ - [_('New Track Browser'), h.url_for( controller='/tracks', action='index' ) ], + [_('New Visualization'), h.url_for( controller='/tracks', action='index' ) ], [_('Saved Visualizations'), h.url_for( controller='/visualization', action='list' ) ] ] tab( "visualization", _("Visualization"), h.url_for( controller='/visualization', action='list'), menu_options=menu_options ) Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: 6 new changesets
by Bitbucket 03 Jan '12

03 Jan '12

6 new commits in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/d9dec25872a8/ changeset: d9dec25872a8 user: jgoecks date: 2011-12-26 23:24:30 summary: Trackster: use icons for setting data transparency, height based on filter values. affected #: 7 files diff -r 21b645303c0221690a0114b021cd5e706b0c917a -r d9dec25872a8b635cffc76fb57ab3666ae37e8e8 static/images/fugue/arrow-resize-090-bw.png Binary file static/images/fugue/arrow-resize-090-bw.png has changed diff -r 21b645303c0221690a0114b021cd5e706b0c917a -r d9dec25872a8b635cffc76fb57ab3666ae37e8e8 static/images/fugue/arrow-resize-090.png Binary file static/images/fugue/arrow-resize-090.png has changed diff -r 21b645303c0221690a0114b021cd5e706b0c917a -r d9dec25872a8b635cffc76fb57ab3666ae37e8e8 static/images/fugue/layer-transparent-bw.png Binary file static/images/fugue/layer-transparent-bw.png has changed diff -r 21b645303c0221690a0114b021cd5e706b0c917a -r d9dec25872a8b635cffc76fb57ab3666ae37e8e8 static/images/fugue/layer-transparent.png Binary file static/images/fugue/layer-transparent.png has changed diff -r 21b645303c0221690a0114b021cd5e706b0c917a -r d9dec25872a8b635cffc76fb57ab3666ae37e8e8 static/june_2007_style/blue/trackster.css --- a/static/june_2007_style/blue/trackster.css +++ b/static/june_2007_style/blue/trackster.css @@ -44,19 +44,19 @@ input{font:10px verdana;} .dynamic-tool,.filters{margin-left:0.25em;padding-bottom:0.5em;} .dynamic-tool{width:410px;} -.filters > .sliders,.display-controls{float:left;margin:1em;} -.sliders{width:410px;} -.display-controls{border-left:solid 2px #DDDDDD;padding-left:1em -} -.filter-row { - margin-top:0.4em;} -.slider-row{margin-left:1em;} -.elt-label{float:left;font-weight:bold;margin-right:1em;} -.slider{float:right;width:200px;position:relative;} +.filters{float:left;margin:1em;width:60%;position:relative;} +.display-controls{float:left;margin-left:1em;} +.slider-row{margin-left:1em;height:16px;} +.elt-label{float:left;width:20%;font-weight:bold;margin-right:1em;} +.slider{float:left;width:40%;position:relative;padding-top:2px;} .tool-name{font-size:110%;font-weight:bold;} .param-row{margin-top:0.2em;margin-left:1em;} .param-label{float:left;font-weight:bold;padding-top:0.2em;} .menu-button{margin:0px 4px 0px 4px;} +.layer-transparent{background:transparent url(../images/fugue/layer-transparent-bw.png) no-repeat;} +.layer-transparent.active{background:transparent url(../images/fugue/layer-transparent.png) no-repeat;} +.arrow-resize-090{background:transparent url(../images/fugue/arrow-resize-090-bw.png) no-repeat;} +.arrow-resize-090.active{background:transparent url(../images/fugue/arrow-resize-090.png) no-repeat;} .layers-stack{background:transparent url(../images/fugue/layers-stack-bw.png) no-repeat;} .layers-stack:hover{background:transparent url(../images/fugue/layers-stack.png) no-repeat;} .chevron-expand{background:transparent url(../images/fugue/chevron-expand-bw.png) no-repeat;} @@ -92,4 +92,4 @@ .intro{padding:1em;} .intro > .action-button{background-color:#CCC;padding:1em;} .feature-popup{position:absolute;z-index:1000;padding:5px;font-size:10px;filter:alpha(opacity=80);background-repeat:no-repeat;background-image:url(../images/tipsy.gif);background-position:top center;} -.feature-popup-inner{padding:5px 8px 4px 8px;background-color:black;color:white;} +.feature-popup-inner{padding:5px 8px 4px 8px;background-color:black;color:white;} \ No newline at end of file diff -r 21b645303c0221690a0114b021cd5e706b0c917a -r d9dec25872a8b635cffc76fb57ab3666ae37e8e8 static/june_2007_style/trackster.css.tmpl --- a/static/june_2007_style/trackster.css.tmpl +++ b/static/june_2007_style/trackster.css.tmpl @@ -255,32 +255,31 @@ .dynamic-tool { width:410px; } -.filters > .sliders, .display-controls { +.filters { float: left; margin: 1em; -} -.sliders{ - width: 410px; + width: 60%; + position:relative; } .display-controls { - border-left: solid 2px #DDDDDD; - padding-left: 1em -} -.filter-row { - margin-top:0.4em; + float: left; + margin-left: 1em; } .slider-row { margin-left: 1em; + height: 16px; } .elt-label { float: left; + width: 20%; font-weight: bold; margin-right: 1em; } .slider { - float: right; - width: 200px; + float: left; + width: 40%; position: relative; + padding-top:2px; } .tool-name { font-size: 110%; @@ -298,6 +297,18 @@ .menu-button { margin: 0px 4px 0px 4px; } +.layer-transparent { + background: transparent url(../images/fugue/layer-transparent-bw.png) no-repeat; +} +.layer-transparent.active { + background: transparent url(../images/fugue/layer-transparent.png) no-repeat; +} +.arrow-resize-090 { + background: transparent url(../images/fugue/arrow-resize-090-bw.png) no-repeat; +} +.arrow-resize-090.active { + background: transparent url(../images/fugue/arrow-resize-090.png) no-repeat; +} .layers-stack { background: transparent url(../images/fugue/layers-stack-bw.png) no-repeat; } diff -r 21b645303c0221690a0114b021cd5e706b0c917a -r d9dec25872a8b635cffc76fb57ab3666ae37e8e8 static/scripts/trackster.js --- a/static/scripts/trackster.js +++ b/static/scripts/trackster.js @@ -153,6 +153,15 @@ return '#' + ( 0x1000000 + new_color ).toString(16).substr(1,6); }; +/** + * Creates an action icon. + */ +var create_action_icon = function(title, css_class, on_click_fn) { + return $("<a/>").attr("href", "javascript:void(0);").attr("title", title) + .addClass("icon-button").addClass(css_class).tipsy( {gravity: 's'} ) + .click(on_click_fn); +}; + // Encapsulate -- anything to be availabe outside this block is added to exports var trackster_module = function(require, exports) { @@ -2100,19 +2109,18 @@ }); // - // Create sliders div. + // Create sliders. // - var sliders_div = $("<div/>").addClass("sliders").appendTo(this.parent_div); var manager = this; $.each(this.filters, function(index, filter) { - filter.container = $("<div/>").addClass("filter-row slider-row").appendTo(sliders_div); + filter.container = $("<div/>").addClass("filter-row slider-row").appendTo(manager.parent_div); // Set up filter label (name, values). var filter_label = $("<div/>").addClass("elt-label").appendTo(filter.container) var name_span = $("<span/>").addClass("slider-name").text(filter.name + " ").appendTo(filter_label); var values_span = $("<span/>"); var values_span_container = $("<span/>").addClass("slider-value").appendTo(filter_label).append("[").append(values_span).append("]"); - + // Set up slider for filter. var slider_div = $("<div/>").addClass("slider").appendTo(filter.container); filter.control_element = $("<div/>").attr("id", filter.name + "-filter-control").appendTo(slider_div); @@ -2142,59 +2150,71 @@ // Enable users to edit slider values via text box. edit_slider_values(values_span_container, values_span, filter.control_element); + // Set up filter display controls. + var + display_controls_div = $("<div/>").addClass("display-controls").appendTo(filter.container), + transparency_icon = create_action_icon("Use filter for data transparency", "layer-transparent", + function() { + if (manager.alpha_filter !== filter) { + // Setting this filter as the alpha filter. + manager.alpha_filter = filter; + // Update UI for new filter. + $(".layer-transparent").removeClass("active").hide(); + transparency_icon.addClass("active").show(); + } + else { + // Clearing filter as alpha filter. + manager.alpha_filter = null; + transparency_icon.removeClass("active"); + } + manager.track.request_draw(true, true); + } ) + .appendTo(display_controls_div).hide(), + height_icon = create_action_icon("Use filter for data height", "arrow-resize-090", + function() { + if (manager.height_filter !== filter) { + // Setting this filter as the height filter. + manager.height_filter = filter; + // Update UI for new filter. + $(".arrow-resize-090").removeClass("active").hide(); + height_icon.addClass("active").show(); + } + else { + // Clearing filter as alpha filter. + manager.height_filter = null; + height_icon.removeClass("active"); + } + manager.track.request_draw(true, true); + } ) + .appendTo(display_controls_div).hide(); + + filter.container.hover( function() { + transparency_icon.show(); + height_icon.show(); + }, + function() { + if (manager.alpha_filter !== filter) { + transparency_icon.hide(); + } + if (manager.height_filter !== filter) { + height_icon.hide(); + } + } ); + // Add to clear floating layout. $("<div style='clear: both;'/>").appendTo(filter.container); }); // Add button to filter complete dataset. if (this.filters.length !== 0) { - var run_buttons_row = $("<div/>").addClass("param-row").appendTo(sliders_div); + var run_buttons_row = $("<div/>").addClass("param-row").appendTo(this.parent_div); var run_on_dataset_button = $("<input type='submit'/>").attr("value", "Run on complete dataset").appendTo(run_buttons_row); var filter_manager = this; run_on_dataset_button.click( function() { filter_manager.run_on_dataset(); }); } - - // - // Create filtering display controls. - // - var - display_controls_div = $("<div/>").addClass("display-controls").appendTo(this.parent_div), - formatting_div, - header_text, - select, - // TODO: find better way to specify and change control filters. - filter_controls_dict = { - "Transparency": function(new_filter) { manager.alpha_filter = new_filter; }, - "Height" : function(new_filter) { manager.height_filter = new_filter; } - }; - $.each(filter_controls_dict, function(control_name, filter) { - // Display name and select option. - formatting_div = $("<div/>").addClass("filter-row").appendTo(display_controls_div), - header_text = $("<span/>").addClass("elt-label").text(control_name + ":").appendTo(formatting_div), - select = $("<select/>").attr("name", control_name + "_dropdown").css("float", "right").appendTo(formatting_div); - - // Dropdown for selecting filter. - $("<option/>").attr("value", -1).text("== None ==").appendTo(select); - for (var i = 0; i < manager.filters.length; i++) { - $("<option/>").attr("value", i).text(manager.filters[i].name).appendTo(select); - } - select.change(function() { - $(this).children("option:selected").each(function() { - var filterIndex = parseInt($(this).val()); - filter_controls_dict[control_name]( (filterIndex >= 0 ? manager.filters[filterIndex] : null) ); - manager.track.request_draw(true, true); - }) - }); - - // Clear floating. - $("<div style='clear: both;'/>").appendTo(formatting_div); - }); - - // Clear floating. - $("<div style='clear: both;'/>").appendTo(this.parent_div); }; extend(FiltersManager.prototype, { https://bitbucket.org/galaxy/galaxy-central/changeset/eb5c80ae4161/ changeset: eb5c80ae4161 user: jgoecks date: 2011-12-27 16:52:59 summary: Trackster: use track-specific function to determine if cached data is usable for a given display mode. This obviates the need to use mode in data cache keys and prevents unneeded fetching of data. affected #: 1 file diff -r d9dec25872a8b635cffc76fb57ab3666ae37e8e8 -r eb5c80ae41612c9bbe27665f4749a0ba22c794e3 static/scripts/trackster.js --- a/static/scripts/trackster.js +++ b/static/scripts/trackster.js @@ -83,6 +83,13 @@ }; /** + * Helper to determine if object is jQuery deferred. + */ +var is_deferred = function ( d ) { + return ( 'isResolved' in d ); +}; + +/** * Returns a random color in hexadecimal format that is sufficiently different from a single color * or set of colors. * @param colors a color or list of colors in the format '#RRGGBB' @@ -486,7 +493,7 @@ // Do request. var manager = this; return $.getJSON(this.track.data_url, params, function (result) { - manager.set_data(low, high, mode, result); + manager.set_data(low, high, result); }); }, /** @@ -502,9 +509,12 @@ } */ - // Look for entry and return if found. - var entry = this.get_data_from_cache(low, high, mode); - if (entry) { return entry; } + // Look for entry and return if it's a deferred or if data available is compatible with mode. + var entry = this.get(low, high); + if ( entry && + ( is_deferred(entry) || this.track.data_and_mode_compatible(entry, mode) ) ) { + return entry; + } // // If data supports subsetting: @@ -541,7 +551,7 @@ // Load data from server. The deferred is immediately saved until the // data is ready, it then replaces itself with the actual data entry = this.load_data(low, high, mode, resolution, extra_params); - this.set_data(low, high, mode, entry); + this.set_data(low, high, entry); return entry; }, /** "Deep" data request; used as a parameter for DataManager.get_more_data() */ @@ -555,8 +565,8 @@ // // Get current data from cache and mark as stale. // - var cur_data = this.get_data_from_cache(low, high, mode); - if (!cur_data) { + var cur_data = this.get(low, high); + if ( !(cur_data && this.track.data_and_mode_compatible(cur_data, mode)) ) { console.log("ERROR: no current data for: ", this.track, low, high, mode, resolution, extra_params); return; } @@ -586,7 +596,7 @@ new_data_available = $.Deferred(); // load_data sets cache to new_data_request, but use custom deferred object so that signal and data // is all data, not just new data. - this.set_data(low, high, mode, new_data_available); + this.set_data(low, high, new_data_available); $.when(new_data_request).then(function(result) { // Update data and message. if (result.data) { @@ -599,23 +609,23 @@ result.message = result.message.replace(/[0-9]+/, result.data.length); } } - data_manager.set_data(low, high, mode, result); + data_manager.set_data(low, high, result); new_data_available.resolve(result); }); return new_data_available; }, /** - * Gets data from the cache. + * Get data from the cache. */ - get_data_from_cache: function(low, high, mode) { - return this.get(this.gen_key(low, high, mode)); + get: function(low, high) { + return Cache.prototype.get.call( this, this.gen_key(low, high) ); }, /** * Sets data in the cache. */ - set_data: function(low, high, mode, result) { - //console.log("set_data", low, high, mode, result); - return this.set(this.gen_key(low, high, mode), result); + set_data: function(low, high, result) { + //console.log("set_data", low, high, result); + return this.set(this.gen_key(low, high), result); }, /** * Generate key for cache. @@ -624,12 +634,12 @@ // manager does not need to be cleared when changing chroms. // TODO: use resolution in key b/c summary tree data is dependent on resolution -- is this // necessary, i.e. will resolution change but not low/high/mode? - gen_key: function(low, high, mode) { - var key = low + "_" + high + "_" + mode; + gen_key: function(low, high) { + var key = low + "_" + high; return key; }, /** - * Split key from cache into array with format [low, high, mode] + * Split key from cache into array with format [low, high] */ split_key: function(key) { return key.split("_"); @@ -3124,11 +3134,6 @@ return tile; } - // Helper to determine if object is jQuery deferred - var is_deferred = function ( d ) { - return ( 'isResolved' in d ); - }; - // Flag to track whether we can draw everything now var can_draw_now = true @@ -3271,6 +3276,12 @@ return " - region=[" + region + "], parameters=[" + track.tool.get_param_values().join(", ") + "]"; }, /** + * Returns true if data is compatible with a given mode. + */ + data_and_mode_compatible: function(data, mode) { + return false; + }, + /** * Set up track to receive tool data. */ init_for_tool_data: function() { @@ -3430,11 +3441,6 @@ return tile; } - // Helper to determine if object is jQuery deferred - var is_deferred = function ( d ) { - return ( 'isResolved' in d ); - }; - // Try to get drawables' data. var all_data = [], track, @@ -3699,7 +3705,14 @@ painter.draw(ctx, canvas.width, canvas.height); return new Tile(this.track, tile_index, resolution, canvas, result.data); - } + }, + /** + * Returns true if data is compatible with a given mode. NOTE: for LineTrack, always + * returns true because all data is compatible with all modes. + */ + data_and_mode_compatible: function(data, mode) { + return true; + }, }); var FeatureTrack = function(name, view, container, hda_ldda, dataset_id, prefs, filters, tool, data_manager) { @@ -4106,7 +4119,23 @@ } return new FeatureTrackTile(track, tile_index, resolution, canvas, result.data, mode, result.message, feature_mapper); - } + }, + /** + * Returns true if data is compatible with a given mode. + */ + data_and_mode_compatible: function(data, mode) { + // Only handle modes that user can set. + if (mode === "Auto") { + return true; + } + // All other modes--Histogram, Dense, Squish, Pack--require data + details. + else if (data.extra_info === "no_detail" || data.dataset_type === "summary_tree") { + return false; + } + else { + return true; + } + }, }); var VcfTrack = function(name, view, container, hda_ldda, dataset_id, prefs, filters, tool, data_manager) { https://bitbucket.org/galaxy/galaxy-central/changeset/1631db967792/ changeset: 1631db967792 user: jgoecks date: 2011-12-27 17:11:12 summary: Update to jQuery v1.7.1 and pack scripts. affected #: 4 files diff -r eb5c80ae41612c9bbe27665f4749a0ba22c794e3 -r 1631db9677923b74cad7f595512ca8ccd2791df0 static/scripts/jquery.js --- a/static/scripts/jquery.js +++ b/static/scripts/jquery.js @@ -1,5 +1,5 @@ /*! - * jQuery JavaScript Library v1.5.2 + * jQuery JavaScript Library v1.7.1 * http://jquery.com/ * * Copyright 2011, John Resig @@ -11,12 +11,14 @@ * Copyright 2011, The Dojo Foundation * Released under the MIT, BSD, and GPL Licenses. * - * Date: Thu Mar 31 15:28:23 2011 -0400 + * Date: Mon Nov 21 21:11:03 2011 -0500 */ (function( window, undefined ) { // Use the correct document accordingly with window argument (sandbox) -var document = window.document; +var document = window.document, + navigator = window.navigator, + location = window.location; var jQuery = (function() { // Define a local copy of jQuery @@ -35,8 +37,8 @@ rootjQuery, // A simple way to check for HTML strings or ID strings - // (both of which we optimize for) - quickExpr = /^(?:[^<]*(<[\w\W]+>)[^>]*$|#([\w\-]+)$)/, + // Prioritize #id over <tag> to avoid XSS via location.hash (#9521) + quickExpr = /^(?:[^#<]*(<[\w\W]+>)[^>]*$|#([\w\-]*)$)/, // Check if a string has a non-whitespace character in it rnotwhite = /\S/, @@ -45,9 +47,6 @@ trimLeft = /^\s+/, trimRight = /\s+$/, - // Check for digits - rdigit = /\d/, - // Match a standalone tag rsingleTag = /^<(\w+)\s*\/?>(?:<\/\1>)?$/, @@ -63,6 +62,15 @@ rmsie = /(msie) ([\w.]+)/, rmozilla = /(mozilla)(?:.*? rv:([\w.]+))?/, + // Matches dashed string for camelizing + rdashAlpha = /-([a-z]|[0-9])/ig, + rmsPrefix = /^-ms-/, + + // Used by jQuery.camelCase as callback to replace() + fcamelCase = function( all, letter ) { + return ( letter + "" ).toUpperCase(); + }, + // Keep a UserAgent string for use with jQuery.browser userAgent = navigator.userAgent, @@ -107,7 +115,7 @@ if ( selector === "body" && !context && document.body ) { this.context = document; this[0] = document.body; - this.selector = "body"; + this.selector = selector; this.length = 1; return this; } @@ -115,7 +123,13 @@ // Handle HTML strings if ( typeof selector === "string" ) { // Are we dealing with HTML string or an ID? - match = quickExpr.exec( selector ); + if ( selector.charAt(0) === "<" && selector.charAt( selector.length - 1 ) === ">" && selector.length >= 3 ) { + // Assume that strings that start and end with <> are HTML and skip the regex check + match = [ null, selector, null ]; + + } else { + match = quickExpr.exec( selector ); + } // Verify a match, and that no context was specified for #id if ( match && (match[1] || !context) ) { @@ -123,7 +137,7 @@ // HANDLE: $(html) -> $(array) if ( match[1] ) { context = context instanceof jQuery ? context[0] : context; - doc = (context ? context.ownerDocument || context : document); + doc = ( context ? context.ownerDocument || context : document ); // If a single string is passed in and it's a single tag // just do a createElement and skip the rest @@ -140,7 +154,7 @@ } else { ret = jQuery.buildFragment( [ match[1] ], [ doc ] ); - selector = (ret.cacheable ? jQuery.clone(ret.fragment) : ret.fragment).childNodes; + selector = ( ret.cacheable ? jQuery.clone(ret.fragment) : ret.fragment ).childNodes; } return jQuery.merge( this, selector ); @@ -170,7 +184,7 @@ // HANDLE: $(expr, $(...)) } else if ( !context || context.jquery ) { - return (context || rootjQuery).find( selector ); + return ( context || rootjQuery ).find( selector ); // HANDLE: $(expr, context) // (which is just equivalent to: $(context).find(expr) @@ -184,7 +198,7 @@ return rootjQuery.ready( selector ); } - if (selector.selector !== undefined) { + if ( selector.selector !== undefined ) { this.selector = selector.selector; this.context = selector.context; } @@ -196,7 +210,7 @@ selector: "", // The current version of jQuery being used - jquery: "1.5.2", + jquery: "1.7.1", // The default length of a jQuery object is 0 length: 0, @@ -241,7 +255,7 @@ ret.context = this.context; if ( name === "find" ) { - ret.selector = this.selector + (this.selector ? " " : "") + selector; + ret.selector = this.selector + ( this.selector ? " " : "" ) + selector; } else if ( name ) { ret.selector = this.selector + "." + name + "(" + selector + ")"; } @@ -262,15 +276,16 @@ jQuery.bindReady(); // Add the callback - readyList.done( fn ); + readyList.add( fn ); return this; }, eq: function( i ) { + i = +i; return i === -1 ? this.slice( i ) : - this.slice( i, +i + 1 ); + this.slice( i, i + 1 ); }, first: function() { @@ -372,9 +387,11 @@ jQuery.extend({ noConflict: function( deep ) { - window.$ = _$; - - if ( deep ) { + if ( window.$ === jQuery ) { + window.$ = _$; + } + + if ( deep && window.jQuery === jQuery ) { window.jQuery = _jQuery; } @@ -388,15 +405,19 @@ // the ready event fires. See #6781 readyWait: 1, + // Hold (or release) the ready event + holdReady: function( hold ) { + if ( hold ) { + jQuery.readyWait++; + } else { + jQuery.ready( true ); + } + }, + // Handle when the DOM is ready ready: function( wait ) { - // A third-party is pushing the ready event forwards - if ( wait === true ) { - jQuery.readyWait--; - } - - // Make sure that the DOM is not already loaded - if ( !jQuery.readyWait || (wait !== true && !jQuery.isReady) ) { + // Either a released hold or an DOMready/load event and not yet ready + if ( (wait === true && !--jQuery.readyWait) || (wait !== true && !jQuery.isReady) ) { // Make sure body exists, at least, in case IE gets a little overzealous (ticket #5443). if ( !document.body ) { return setTimeout( jQuery.ready, 1 ); @@ -411,11 +432,11 @@ } // If there are functions bound, to execute - readyList.resolveWith( document, [ jQuery ] ); + readyList.fireWith( document, [ jQuery ] ); // Trigger any bound ready events if ( jQuery.fn.trigger ) { - jQuery( document ).trigger( "ready" ).unbind( "ready" ); + jQuery( document ).trigger( "ready" ).off( "ready" ); } } }, @@ -425,7 +446,7 @@ return; } - readyList = jQuery._Deferred(); + readyList = jQuery.Callbacks( "once memory" ); // Catch cases where $(document).ready() is called after the // browser event has already occurred. @@ -446,7 +467,7 @@ } else if ( document.attachEvent ) { // ensure firing before onload, // maybe late but safe also for iframes - document.attachEvent("onreadystatechange", DOMContentLoaded); + document.attachEvent( "onreadystatechange", DOMContentLoaded ); // A fallback to window.onload, that will always work window.attachEvent( "onload", jQuery.ready ); @@ -481,8 +502,8 @@ return obj && typeof obj === "object" && "setInterval" in obj; }, - isNaN: function( obj ) { - return obj == null || !rdigit.test( obj ) || isNaN( obj ); + isNumeric: function( obj ) { + return !isNaN( parseFloat(obj) ) && isFinite( obj ); }, type: function( obj ) { @@ -499,10 +520,15 @@ return false; } - // Not own constructor property must be Object - if ( obj.constructor && - !hasOwn.call(obj, "constructor") && - !hasOwn.call(obj.constructor.prototype, "isPrototypeOf") ) { + try { + // Not own constructor property must be Object + if ( obj.constructor && + !hasOwn.call(obj, "constructor") && + !hasOwn.call(obj.constructor.prototype, "isPrototypeOf") ) { + return false; + } + } catch ( e ) { + // IE8,9 Will throw exceptions on certain host objects #9897 return false; } @@ -523,7 +549,7 @@ }, error: function( msg ) { - throw msg; + throw new Error( msg ); }, parseJSON: function( data ) { @@ -534,65 +560,64 @@ // Make sure leading/trailing whitespace is removed (IE can't handle it) data = jQuery.trim( data ); + // Attempt to parse using the native JSON parser first + if ( window.JSON && window.JSON.parse ) { + return window.JSON.parse( data ); + } + // Make sure the incoming data is actual JSON // Logic borrowed from http://json.org/json2.js - if ( rvalidchars.test(data.replace(rvalidescape, "@") - .replace(rvalidtokens, "]") - .replace(rvalidbraces, "")) ) { - - // Try to use the native JSON parser first - return window.JSON && window.JSON.parse ? - window.JSON.parse( data ) : - (new Function("return " + data))(); - - } else { - jQuery.error( "Invalid JSON: " + data ); - } + if ( rvalidchars.test( data.replace( rvalidescape, "@" ) + .replace( rvalidtokens, "]" ) + .replace( rvalidbraces, "")) ) { + + return ( new Function( "return " + data ) )(); + + } + jQuery.error( "Invalid JSON: " + data ); }, // Cross-browser xml parsing - // (xml & tmp used internally) - parseXML: function( data , xml , tmp ) { - - if ( window.DOMParser ) { // Standard - tmp = new DOMParser(); - xml = tmp.parseFromString( data , "text/xml" ); - } else { // IE - xml = new ActiveXObject( "Microsoft.XMLDOM" ); - xml.async = "false"; - xml.loadXML( data ); - } - - tmp = xml.documentElement; - - if ( ! tmp || ! tmp.nodeName || tmp.nodeName === "parsererror" ) { + parseXML: function( data ) { + var xml, tmp; + try { + if ( window.DOMParser ) { // Standard + tmp = new DOMParser(); + xml = tmp.parseFromString( data , "text/xml" ); + } else { // IE + xml = new ActiveXObject( "Microsoft.XMLDOM" ); + xml.async = "false"; + xml.loadXML( data ); + } + } catch( e ) { + xml = undefined; + } + if ( !xml || !xml.documentElement || xml.getElementsByTagName( "parsererror" ).length ) { jQuery.error( "Invalid XML: " + data ); } - return xml; }, noop: function() {}, - // Evalulates a script in a global context + // Evaluates a script in a global context + // Workarounds based on findings by Jim Driscoll + // http://weblogs.java.net/blog/driscoll/archive/2009/09/08/eval-javascript-gl… globalEval: function( data ) { - if ( data && rnotwhite.test(data) ) { - // Inspired by code by Andrea Giammarchi - // http://webreflection.blogspot.com/2007/08/global-scope-evaluation-and-dom.h… - var head = document.head || document.getElementsByTagName( "head" )[0] || document.documentElement, - script = document.createElement( "script" ); - - if ( jQuery.support.scriptEval() ) { - script.appendChild( document.createTextNode( data ) ); - } else { - script.text = data; - } - - // Use insertBefore instead of appendChild to circumvent an IE6 bug. - // This arises when a base node is used (#2709). - head.insertBefore( script, head.firstChild ); - head.removeChild( script ); - } + if ( data && rnotwhite.test( data ) ) { + // We use execScript on Internet Explorer + // We use an anonymous function so that context is window + // rather than jQuery in Firefox + ( window.execScript || function( data ) { + window[ "eval" ].call( window, data ); + } )( data ); + } + }, + + // Convert dashed to camelCase; used by the css and data modules + // Microsoft forgot to hump their vendor prefix (#9572) + camelCase: function( string ) { + return string.replace( rmsPrefix, "ms-" ).replace( rdashAlpha, fcamelCase ); }, nodeName: function( elem, name ) { @@ -603,7 +628,7 @@ each: function( object, callback, args ) { var name, i = 0, length = object.length, - isObj = length === undefined || jQuery.isFunction(object); + isObj = length === undefined || jQuery.isFunction( object ); if ( args ) { if ( isObj ) { @@ -629,8 +654,11 @@ } } } else { - for ( var value = object[0]; - i < length && callback.call( value, i, value ) !== false; value = object[++i] ) {} + for ( ; i < length; ) { + if ( callback.call( object[ i ], i, object[ i++ ] ) === false ) { + break; + } + } } } @@ -658,10 +686,8 @@ if ( array != null ) { // The window, strings (and functions) also have 'length' - // The extra typeof function check is to prevent crashes - // in Safari 2 (See: #3039) // Tweaked logic slightly to handle Blackberry 4.7 RegExp issues #6930 - var type = jQuery.type(array); + var type = jQuery.type( array ); if ( array.length == null || type === "string" || type === "function" || type === "regexp" || jQuery.isWindow( array ) ) { push.call( ret, array ); @@ -673,14 +699,22 @@ return ret; }, - inArray: function( elem, array ) { - if ( array.indexOf ) { - return array.indexOf( elem ); - } - - for ( var i = 0, length = array.length; i < length; i++ ) { - if ( array[ i ] === elem ) { - return i; + inArray: function( elem, array, i ) { + var len; + + if ( array ) { + if ( indexOf ) { + return indexOf.call( array, elem, i ); + } + + len = array.length; + i = i ? i < 0 ? Math.max( 0, len + i ) : i : 0; + + for ( ; i < len; i++ ) { + // Skip accessing in sparse arrays + if ( i in array && array[ i ] === elem ) { + return i; + } } } @@ -725,15 +759,30 @@ // arg is for internal usage only map: function( elems, callback, arg ) { - var ret = [], value; + var value, key, ret = [], + i = 0, + length = elems.length, + // jquery objects are treated as arrays + isArray = elems instanceof jQuery || length !== undefined && typeof length === "number" && ( ( length > 0 && elems[ 0 ] && elems[ length -1 ] ) || length === 0 || jQuery.isArray( elems ) ) ; // Go through the array, translating each of the items to their - // new value (or values). - for ( var i = 0, length = elems.length; i < length; i++ ) { - value = callback( elems[ i ], i, arg ); - - if ( value != null ) { - ret[ ret.length ] = value; + if ( isArray ) { + for ( ; i < length; i++ ) { + value = callback( elems[ i ], i, arg ); + + if ( value != null ) { + ret[ ret.length ] = value; + } + } + + // Go through every key on the object, + } else { + for ( key in elems ) { + value = callback( elems[ key ], key, arg ); + + if ( value != null ) { + ret[ ret.length ] = value; + } } } @@ -744,36 +793,35 @@ // A global GUID counter for objects guid: 1, - proxy: function( fn, proxy, thisObject ) { - if ( arguments.length === 2 ) { - if ( typeof proxy === "string" ) { - thisObject = fn; - fn = thisObject[ proxy ]; - proxy = undefined; - - } else if ( proxy && !jQuery.isFunction( proxy ) ) { - thisObject = proxy; - proxy = undefined; - } - } - - if ( !proxy && fn ) { + // Bind a function to a context, optionally partially applying any + // arguments. + proxy: function( fn, context ) { + if ( typeof context === "string" ) { + var tmp = fn[ context ]; + context = fn; + fn = tmp; + } + + // Quick check to determine if target is callable, in the spec + // this throws a TypeError, but we will just return undefined. + if ( !jQuery.isFunction( fn ) ) { + return undefined; + } + + // Simulated bind + var args = slice.call( arguments, 2 ), proxy = function() { - return fn.apply( thisObject || this, arguments ); + return fn.apply( context, args.concat( slice.call( arguments ) ) ); }; - } // Set the guid of unique handler to the same of original handler, so it can be removed - if ( fn ) { - proxy.guid = fn.guid = fn.guid || proxy.guid || jQuery.guid++; - } - - // So proxy can be declared as an argument + proxy.guid = fn.guid = fn.guid || proxy.guid || jQuery.guid++; + return proxy; }, // Mutifunctional method to get and set values to a collection - // The value/s can be optionally by executed if its a function + // The value/s can optionally be executed if it's a function access: function( elems, key, value, exec, fn, pass ) { var length = elems.length; @@ -802,7 +850,7 @@ }, now: function() { - return (new Date()).getTime(); + return ( new Date() ).getTime(); }, // Use of jQuery.browser is frowned upon. @@ -820,24 +868,24 @@ }, sub: function() { - function jQuerySubclass( selector, context ) { - return new jQuerySubclass.fn.init( selector, context ); - } - jQuery.extend( true, jQuerySubclass, this ); - jQuerySubclass.superclass = this; - jQuerySubclass.fn = jQuerySubclass.prototype = this(); - jQuerySubclass.fn.constructor = jQuerySubclass; - jQuerySubclass.subclass = this.subclass; - jQuerySubclass.fn.init = function init( selector, context ) { - if ( context && context instanceof jQuery && !(context instanceof jQuerySubclass) ) { - context = jQuerySubclass(context); - } - - return jQuery.fn.init.call( this, selector, context, rootjQuerySubclass ); + function jQuerySub( selector, context ) { + return new jQuerySub.fn.init( selector, context ); + } + jQuery.extend( true, jQuerySub, this ); + jQuerySub.superclass = this; + jQuerySub.fn = jQuerySub.prototype = this(); + jQuerySub.fn.constructor = jQuerySub; + jQuerySub.sub = this.sub; + jQuerySub.fn.init = function init( selector, context ) { + if ( context && context instanceof jQuery && !(context instanceof jQuerySub) ) { + context = jQuerySub( context ); + } + + return jQuery.fn.init.call( this, selector, context, rootjQuerySub ); }; - jQuerySubclass.fn.init.prototype = jQuerySubclass.fn; - var rootjQuerySubclass = jQuerySubclass(document); - return jQuerySubclass; + jQuerySub.fn.init.prototype = jQuerySub.fn; + var rootjQuerySub = jQuerySub(document); + return jQuerySub; }, browser: {} @@ -859,12 +907,6 @@ jQuery.browser.safari = true; } -if ( indexOf ) { - jQuery.inArray = function( elem, array ) { - return indexOf.call( array, elem ); - }; -} - // IE doesn't match non-breaking spaces with \s if ( rnotwhite.test( "\xA0" ) ) { trimLeft = /^[\s\xA0]+/; @@ -910,167 +952,365 @@ jQuery.ready(); } -// Expose jQuery to the global object return jQuery; })(); -var // Promise methods - promiseMethods = "then done fail isResolved isRejected promise".split( " " ), - // Static reference to slice - sliceDeferred = [].slice; - -jQuery.extend({ - // Create a simple deferred (one callbacks list) - _Deferred: function() { - var // callbacks list - callbacks = [], - // stored [ context , args ] - fired, - // to avoid firing when already doing so - firing, - // flag to know if the deferred has been cancelled - cancelled, - // the deferred itself - deferred = { - - // done( f1, f2, ...) - done: function() { - if ( !cancelled ) { - var args = arguments, - i, - length, - elem, - type, - _fired; - if ( fired ) { - _fired = fired; - fired = 0; - } - for ( i = 0, length = args.length; i < length; i++ ) { - elem = args[ i ]; - type = jQuery.type( elem ); - if ( type === "array" ) { - deferred.done.apply( deferred, elem ); - } else if ( type === "function" ) { - callbacks.push( elem ); +// String to Object flags format cache +var flagsCache = {}; + +// Convert String-formatted flags into Object-formatted ones and store in cache +function createFlags( flags ) { + var object = flagsCache[ flags ] = {}, + i, length; + flags = flags.split( /\s+/ ); + for ( i = 0, length = flags.length; i < length; i++ ) { + object[ flags[i] ] = true; + } + return object; +} + +/* + * Create a callback list using the following parameters: + * + * flags: an optional list of space-separated flags that will change how + * the callback list behaves + * + * By default a callback list will act like an event callback list and can be + * "fired" multiple times. + * + * Possible flags: + * + * once: will ensure the callback list can only be fired once (like a Deferred) + * + * memory: will keep track of previous values and will call any callback added + * after the list has been fired right away with the latest "memorized" + * values (like a Deferred) + * + * unique: will ensure a callback can only be added once (no duplicate in the list) + * + * stopOnFalse: interrupt callings when a callback returns false + * + */ +jQuery.Callbacks = function( flags ) { + + // Convert flags from String-formatted to Object-formatted + // (we check in cache first) + flags = flags ? ( flagsCache[ flags ] || createFlags( flags ) ) : {}; + + var // Actual callback list + list = [], + // Stack of fire calls for repeatable lists + stack = [], + // Last fire value (for non-forgettable lists) + memory, + // Flag to know if list is currently firing + firing, + // First callback to fire (used internally by add and fireWith) + firingStart, + // End of the loop when firing + firingLength, + // Index of currently firing callback (modified by remove if needed) + firingIndex, + // Add one or several callbacks to the list + add = function( args ) { + var i, + length, + elem, + type, + actual; + for ( i = 0, length = args.length; i < length; i++ ) { + elem = args[ i ]; + type = jQuery.type( elem ); + if ( type === "array" ) { + // Inspect recursively + add( elem ); + } else if ( type === "function" ) { + // Add if not in unique mode and callback is not in + if ( !flags.unique || !self.has( elem ) ) { + list.push( elem ); + } + } + } + }, + // Fire callbacks + fire = function( context, args ) { + args = args || []; + memory = !flags.memory || [ context, args ]; + firing = true; + firingIndex = firingStart || 0; + firingStart = 0; + firingLength = list.length; + for ( ; list && firingIndex < firingLength; firingIndex++ ) { + if ( list[ firingIndex ].apply( context, args ) === false && flags.stopOnFalse ) { + memory = true; // Mark as halted + break; + } + } + firing = false; + if ( list ) { + if ( !flags.once ) { + if ( stack && stack.length ) { + memory = stack.shift(); + self.fireWith( memory[ 0 ], memory[ 1 ] ); + } + } else if ( memory === true ) { + self.disable(); + } else { + list = []; + } + } + }, + // Actual Callbacks object + self = { + // Add a callback or a collection of callbacks to the list + add: function() { + if ( list ) { + var length = list.length; + add( arguments ); + // Do we need to add the callbacks to the + // current firing batch? + if ( firing ) { + firingLength = list.length; + // With memory, if we're not firing then + // we should call right away, unless previous + // firing was halted (stopOnFalse) + } else if ( memory && memory !== true ) { + firingStart = length; + fire( memory[ 0 ], memory[ 1 ] ); + } + } + return this; + }, + // Remove a callback from the list + remove: function() { + if ( list ) { + var args = arguments, + argIndex = 0, + argLength = args.length; + for ( ; argIndex < argLength ; argIndex++ ) { + for ( var i = 0; i < list.length; i++ ) { + if ( args[ argIndex ] === list[ i ] ) { + // Handle firingIndex and firingLength + if ( firing ) { + if ( i <= firingLength ) { + firingLength--; + if ( i <= firingIndex ) { + firingIndex--; + } + } + } + // Remove the element + list.splice( i--, 1 ); + // If we have some unicity property then + // we only need to do this once + if ( flags.unique ) { + break; + } } } - if ( _fired ) { - deferred.resolveWith( _fired[ 0 ], _fired[ 1 ] ); + } + } + return this; + }, + // Control if a given callback is in the list + has: function( fn ) { + if ( list ) { + var i = 0, + length = list.length; + for ( ; i < length; i++ ) { + if ( fn === list[ i ] ) { + return true; } } + } + return false; + }, + // Remove all callbacks from the list + empty: function() { + list = []; + return this; + }, + // Have the list do nothing anymore + disable: function() { + list = stack = memory = undefined; + return this; + }, + // Is it disabled? + disabled: function() { + return !list; + }, + // Lock the list in its current state + lock: function() { + stack = undefined; + if ( !memory || memory === true ) { + self.disable(); + } + return this; + }, + // Is it locked? + locked: function() { + return !stack; + }, + // Call all callbacks with the given context and arguments + fireWith: function( context, args ) { + if ( stack ) { + if ( firing ) { + if ( !flags.once ) { + stack.push( [ context, args ] ); + } + } else if ( !( flags.once && memory ) ) { + fire( context, args ); + } + } + return this; + }, + // Call all the callbacks with the given arguments + fire: function() { + self.fireWith( this, arguments ); + return this; + }, + // To know if the callbacks have already been called at least once + fired: function() { + return !!memory; + } + }; + + return self; +}; + + + + +var // Static reference to slice + sliceDeferred = [].slice; + +jQuery.extend({ + + Deferred: function( func ) { + var doneList = jQuery.Callbacks( "once memory" ), + failList = jQuery.Callbacks( "once memory" ), + progressList = jQuery.Callbacks( "memory" ), + state = "pending", + lists = { + resolve: doneList, + reject: failList, + notify: progressList + }, + promise = { + done: doneList.add, + fail: failList.add, + progress: progressList.add, + + state: function() { + return state; + }, + + // Deprecated + isResolved: doneList.fired, + isRejected: failList.fired, + + then: function( doneCallbacks, failCallbacks, progressCallbacks ) { + deferred.done( doneCallbacks ).fail( failCallbacks ).progress( progressCallbacks ); return this; }, - - // resolve with given context and args - resolveWith: function( context, args ) { - if ( !cancelled && !fired && !firing ) { - // make sure args are available (#8421) - args = args || []; - firing = 1; - try { - while( callbacks[ 0 ] ) { - callbacks.shift().apply( context, args ); + always: function() { + deferred.done.apply( deferred, arguments ).fail.apply( deferred, arguments ); + return this; + }, + pipe: function( fnDone, fnFail, fnProgress ) { + return jQuery.Deferred(function( newDefer ) { + jQuery.each( { + done: [ fnDone, "resolve" ], + fail: [ fnFail, "reject" ], + progress: [ fnProgress, "notify" ] + }, function( handler, data ) { + var fn = data[ 0 ], + action = data[ 1 ], + returned; + if ( jQuery.isFunction( fn ) ) { + deferred[ handler ](function() { + returned = fn.apply( this, arguments ); + if ( returned && jQuery.isFunction( returned.promise ) ) { + returned.promise().then( newDefer.resolve, newDefer.reject, newDefer.notify ); + } else { + newDefer[ action + "With" ]( this === deferred ? newDefer : this, [ returned ] ); + } + }); + } else { + deferred[ handler ]( newDefer[ action ] ); } - } - finally { - fired = [ context, args ]; - firing = 0; + }); + }).promise(); + }, + // Get a promise for this deferred + // If obj is provided, the promise aspect is added to the object + promise: function( obj ) { + if ( obj == null ) { + obj = promise; + } else { + for ( var key in promise ) { + obj[ key ] = promise[ key ]; } } - return this; - }, - - // resolve with this as context and given arguments - resolve: function() { - deferred.resolveWith( this, arguments ); - return this; - }, - - // Has this deferred been resolved? - isResolved: function() { - return !!( firing || fired ); - }, - - // Cancel - cancel: function() { - cancelled = 1; - callbacks = []; - return this; - } - }; - - return deferred; - }, - - // Full fledged deferred (two callbacks list) - Deferred: function( func ) { - var deferred = jQuery._Deferred(), - failDeferred = jQuery._Deferred(), - promise; - // Add errorDeferred methods, then and promise - jQuery.extend( deferred, { - then: function( doneCallbacks, failCallbacks ) { - deferred.done( doneCallbacks ).fail( failCallbacks ); - return this; + return obj; + } }, - fail: failDeferred.done, - rejectWith: failDeferred.resolveWith, - reject: failDeferred.resolve, - isRejected: failDeferred.isResolved, - // Get a promise for this deferred - // If obj is provided, the promise aspect is added to the object - promise: function( obj ) { - if ( obj == null ) { - if ( promise ) { - return promise; - } - promise = obj = {}; - } - var i = promiseMethods.length; - while( i-- ) { - obj[ promiseMethods[i] ] = deferred[ promiseMethods[i] ]; - } - return obj; - } - } ); - // Make sure only one callback list will be used - deferred.done( failDeferred.cancel ).fail( deferred.cancel ); - // Unexpose cancel - delete deferred.cancel; + deferred = promise.promise({}), + key; + + for ( key in lists ) { + deferred[ key ] = lists[ key ].fire; + deferred[ key + "With" ] = lists[ key ].fireWith; + } + + // Handle state + deferred.done( function() { + state = "resolved"; + }, failList.disable, progressList.lock ).fail( function() { + state = "rejected"; + }, doneList.disable, progressList.lock ); + // Call given func if any if ( func ) { func.call( deferred, deferred ); } + + // All done! return deferred; }, // Deferred helper when: function( firstParam ) { - var args = arguments, + var args = sliceDeferred.call( arguments, 0 ), i = 0, length = args.length, + pValues = new Array( length ), count = length, + pCount = length, deferred = length <= 1 && firstParam && jQuery.isFunction( firstParam.promise ) ? firstParam : - jQuery.Deferred(); + jQuery.Deferred(), + promise = deferred.promise(); function resolveFunc( i ) { return function( value ) { args[ i ] = arguments.length > 1 ? sliceDeferred.call( arguments, 0 ) : value; if ( !( --count ) ) { - // Strange bug in FF4: - // Values changed onto the arguments object sometimes end up as undefined values - // outside the $.when method. Cloning the object into a fresh array solves the issue - deferred.resolveWith( deferred, sliceDeferred.call( args, 0 ) ); + deferred.resolveWith( deferred, args ); } }; } + function progressFunc( i ) { + return function( value ) { + pValues[ i ] = arguments.length > 1 ? sliceDeferred.call( arguments, 0 ) : value; + deferred.notifyWith( promise, pValues ); + }; + } if ( length > 1 ) { - for( ; i < length; i++ ) { - if ( args[ i ] && jQuery.isFunction( args[ i ].promise ) ) { - args[ i ].promise().then( resolveFunc(i), deferred.reject ); + for ( ; i < length; i++ ) { + if ( args[ i ] && args[ i ].promise && jQuery.isFunction( args[ i ].promise ) ) { + args[ i ].promise().then( resolveFunc(i), deferred.reject, progressFunc(i) ); } else { --count; } @@ -1081,36 +1321,51 @@ } else if ( deferred !== firstParam ) { deferred.resolveWith( deferred, length ? [ firstParam ] : [] ); } - return deferred.promise(); + return promise; } }); -(function() { - - jQuery.support = {}; - - var div = document.createElement("div"); - - div.style.display = "none"; - div.innerHTML = " <link/><table></table><a href='/a' style='color:red;float:left;opacity:.55;'>a</a><input type='checkbox'/>"; - - var all = div.getElementsByTagName("*"), - a = div.getElementsByTagName("a")[0], - select = document.createElement("select"), - opt = select.appendChild( document.createElement("option") ), - input = div.getElementsByTagName("input")[0]; +jQuery.support = (function() { + + var support, + all, + a, + select, + opt, + input, + marginDiv, + fragment, + tds, + events, + eventName, + i, + isSupported, + div = document.createElement( "div" ), + documentElement = document.documentElement; + + // Preliminary tests + div.setAttribute("className", "t"); + div.innerHTML = " <link/><table></table><a href='/a' style='top:1px;float:left;opacity:.55;'>a</a><input type='checkbox'/>"; + + all = div.getElementsByTagName( "*" ); + a = div.getElementsByTagName( "a" )[ 0 ]; // Can't get basic test support if ( !all || !all.length || !a ) { - return; - } - - jQuery.support = { + return {}; + } + + // First batch of supports tests + select = document.createElement( "select" ); + opt = select.appendChild( document.createElement("option") ); + input = div.getElementsByTagName( "input" )[ 0 ]; + + support = { // IE strips leading whitespace when .innerHTML is used - leadingWhitespace: div.firstChild.nodeType === 3, + leadingWhitespace: ( div.firstChild.nodeType === 3 ), // Make sure that tbody elements aren't automatically inserted // IE will insert them into empty tables @@ -1121,17 +1376,17 @@ htmlSerialize: !!div.getElementsByTagName("link").length, // Get the style information from getAttribute - // (IE uses .cssText insted) - style: /red/.test( a.getAttribute("style") ), + // (IE uses .cssText instead) + style: /top/.test( a.getAttribute("style") ), // Make sure that URLs aren't manipulated // (IE normalizes it by default) - hrefNormalized: a.getAttribute("href") === "/a", + hrefNormalized: ( a.getAttribute("href") === "/a" ), // Make sure that element opacity exists // (IE uses filter instead) // Use a regex to work around a WebKit issue. See #5145 - opacity: /^0.55$/.test( a.style.opacity ), + opacity: /^0.55/.test( a.style.opacity ), // Verify style float existence // (IE uses styleFloat instead of cssFloat) @@ -1140,123 +1395,151 @@ // Make sure that if no value is specified for a checkbox // that it defaults to "on". // (WebKit defaults to "" instead) - checkOn: input.value === "on", + checkOn: ( input.value === "on" ), // Make sure that a selected-by-default option has a working selected property. // (WebKit defaults to false instead of true, IE too, if it's in an optgroup) optSelected: opt.selected, + // Test setAttribute on camelCase class. If it works, we need attrFixes when doing get/setAttribute (ie6/7) + getSetAttribute: div.className !== "t", + + // Tests for enctype support on a form(#6743) + enctype: !!document.createElement("form").enctype, + + // Makes sure cloning an html5 element does not cause problems + // Where outerHTML is undefined, this still works + html5Clone: document.createElement("nav").cloneNode( true ).outerHTML !== "<:nav></:nav>", + // Will be defined later + submitBubbles: true, + changeBubbles: true, + focusinBubbles: false, deleteExpando: true, - optDisabled: false, - checkClone: false, noCloneEvent: true, - noCloneChecked: true, - boxModel: null, inlineBlockNeedsLayout: false, shrinkWrapBlocks: false, - reliableHiddenOffsets: true, reliableMarginRight: true }; + // Make sure checked status is properly cloned input.checked = true; - jQuery.support.noCloneChecked = input.cloneNode( true ).checked; + support.noCloneChecked = input.cloneNode( true ).checked; // Make sure that the options inside disabled selects aren't marked as disabled - // (WebKit marks them as diabled) + // (WebKit marks them as disabled) select.disabled = true; - jQuery.support.optDisabled = !opt.disabled; - - var _scriptEval = null; - jQuery.support.scriptEval = function() { - if ( _scriptEval === null ) { - var root = document.documentElement, - script = document.createElement("script"), - id = "script" + jQuery.now(); - - // Make sure that the execution of code works by injecting a script - // tag with appendChild/createTextNode - // (IE doesn't support this, fails, and uses .text instead) - try { - script.appendChild( document.createTextNode( "window." + id + "=1;" ) ); - } catch(e) {} - - root.insertBefore( script, root.firstChild ); - - if ( window[ id ] ) { - _scriptEval = true; - delete window[ id ]; - } else { - _scriptEval = false; - } - - root.removeChild( script ); - } - - return _scriptEval; - }; + support.optDisabled = !opt.disabled; // Test to see if it's possible to delete an expando from an element // Fails in Internet Explorer try { delete div.test; - - } catch(e) { - jQuery.support.deleteExpando = false; + } catch( e ) { + support.deleteExpando = false; } if ( !div.addEventListener && div.attachEvent && div.fireEvent ) { - div.attachEvent("onclick", function click() { + div.attachEvent( "onclick", function() { // Cloning a node shouldn't copy over any // bound event handlers (IE does this) - jQuery.support.noCloneEvent = false; - div.detachEvent("onclick", click); + support.noCloneEvent = false; }); - div.cloneNode(true).fireEvent("onclick"); - } - - div = document.createElement("div"); - div.innerHTML = "<input type='radio' name='radiotest' checked='checked'/>"; - - var fragment = document.createDocumentFragment(); - fragment.appendChild( div.firstChild ); + div.cloneNode( true ).fireEvent( "onclick" ); + } + + // Check if a radio maintains its value + // after being appended to the DOM + input = document.createElement("input"); + input.value = "t"; + input.setAttribute("type", "radio"); + support.radioValue = input.value === "t"; + + input.setAttribute("checked", "checked"); + div.appendChild( input ); + fragment = document.createDocumentFragment(); + fragment.appendChild( div.lastChild ); // WebKit doesn't clone checked state correctly in fragments - jQuery.support.checkClone = fragment.cloneNode(true).cloneNode(true).lastChild.checked; - - // Figure out if the W3C box model works as expected - // document.body must exist before we can do this + support.checkClone = fragment.cloneNode( true ).cloneNode( true ).lastChild.checked; + + // Check if a disconnected checkbox will retain its checked + // value of true after appended to the DOM (IE6/7) + support.appendChecked = input.checked; + + fragment.removeChild( input ); + fragment.appendChild( div ); + + div.innerHTML = ""; + + // Check if div with explicit width and no margin-right incorrectly + // gets computed margin-right based on width of container. For more + // info see bug #3333 + // Fails in WebKit before Feb 2011 nightlies + // WebKit Bug 13343 - getComputedStyle returns wrong value for margin-right + if ( window.getComputedStyle ) { + marginDiv = document.createElement( "div" ); + marginDiv.style.width = "0"; + marginDiv.style.marginRight = "0"; + div.style.width = "2px"; + div.appendChild( marginDiv ); + support.reliableMarginRight = + ( parseInt( ( window.getComputedStyle( marginDiv, null ) || { marginRight: 0 } ).marginRight, 10 ) || 0 ) === 0; + } + + // Technique from Juriy Zaytsev + // http://perfectionkills.com/detecting-event-support-without-browser-sniffing/ + // We only care about the case where non-standard event systems + // are used, namely in IE. Short-circuiting here helps us to + // avoid an eval call (in setAttribute) which can cause CSP + // to go haywire. See: https://developer.mozilla.org/en/Security/CSP + if ( div.attachEvent ) { + for( i in { + submit: 1, + change: 1, + focusin: 1 + }) { + eventName = "on" + i; + isSupported = ( eventName in div ); + if ( !isSupported ) { + div.setAttribute( eventName, "return;" ); + isSupported = ( typeof div[ eventName ] === "function" ); + } + support[ i + "Bubbles" ] = isSupported; + } + } + + fragment.removeChild( div ); + + // Null elements to avoid leaks in IE + fragment = select = opt = marginDiv = div = input = null; + + // Run tests that need a body at doc ready jQuery(function() { - var div = document.createElement("div"), + var container, outer, inner, table, td, offsetSupport, + conMarginTop, ptlm, vb, style, html, body = document.getElementsByTagName("body")[0]; - // Frameset documents with no body should not run this code if ( !body ) { + // Return for frameset docs that don't have a body return; } - div.style.width = div.style.paddingLeft = "1px"; - body.appendChild( div ); - jQuery.boxModel = jQuery.support.boxModel = div.offsetWidth === 2; - - if ( "zoom" in div.style ) { - // Check if natively block-level elements act like inline-block - // elements when setting their display to 'inline' and giving - // them layout - // (IE < 8 does this) - div.style.display = "inline"; - div.style.zoom = 1; - jQuery.support.inlineBlockNeedsLayout = div.offsetWidth === 2; - - // Check if elements with layout shrink-wrap their children - // (IE 6 does this) - div.style.display = ""; - div.innerHTML = "<div style='width:4px;'></div>"; - jQuery.support.shrinkWrapBlocks = div.offsetWidth !== 2; - } - - div.innerHTML = "<table><tr><td style='padding:0;border:0;display:none'></td><td>t</td></tr></table>"; - var tds = div.getElementsByTagName("td"); + conMarginTop = 1; + ptlm = "position:absolute;top:0;left:0;width:1px;height:1px;margin:0;"; + vb = "visibility:hidden;border:0;"; + style = "style='" + ptlm + "border:5px solid #000;padding:0;'"; + html = "<div " + style + "><div></div></div>" + + "<table " + style + " cellpadding='0' cellspacing='0'>" + + "<tr><td></td></tr></table>"; + + container = document.createElement("div"); + container.style.cssText = vb + "width:0;height:0;position:static;top:0;margin-top:" + conMarginTop + "px"; + body.insertBefore( container, body.firstChild ); + + // Construct the test element + div = document.createElement("div"); + container.appendChild( div ); // Check if table cells still have offsetWidth/Height when they are set // to display:none and there are still other visible table cells in a @@ -1265,63 +1548,77 @@ // display:none (it is still safe to use offsets if a parent element is // hidden; don safety goggles and see bug #4512 for more information). // (only IE 8 fails this test) - jQuery.support.reliableHiddenOffsets = tds[0].offsetHeight === 0; - - tds[0].style.display = ""; - tds[1].style.display = "none"; + div.innerHTML = "<table><tr><td style='padding:0;border:0;display:none'></td><td>t</td></tr></table>"; + tds = div.getElementsByTagName( "td" ); + isSupported = ( tds[ 0 ].offsetHeight === 0 ); + + tds[ 0 ].style.display = ""; + tds[ 1 ].style.display = "none"; // Check if empty table cells still have offsetWidth/Height - // (IE < 8 fail this test) - jQuery.support.reliableHiddenOffsets = jQuery.support.reliableHiddenOffsets && tds[0].offsetHeight === 0; + // (IE <= 8 fail this test) + support.reliableHiddenOffsets = isSupported && ( tds[ 0 ].offsetHeight === 0 ); + + // Figure out if the W3C box model works as expected div.innerHTML = ""; - - // Check if div with explicit width and no margin-right incorrectly - // gets computed margin-right based on width of container. For more - // info see bug #3333 - // Fails in WebKit before Feb 2011 nightlies - // WebKit Bug 13343 - getComputedStyle returns wrong value for margin-right - if ( document.defaultView && document.defaultView.getComputedStyle ) { - div.style.width = "1px"; - div.style.marginRight = "0"; - jQuery.support.reliableMarginRight = ( parseInt(document.defaultView.getComputedStyle(div, null).marginRight, 10) || 0 ) === 0; - } - - body.removeChild( div ).style.display = "none"; - div = tds = null; + div.style.width = div.style.paddingLeft = "1px"; + jQuery.boxModel = support.boxModel = div.offsetWidth === 2; + + if ( typeof div.style.zoom !== "undefined" ) { + // Check if natively block-level elements act like inline-block + // elements when setting their display to 'inline' and giving + // them layout + // (IE < 8 does this) + div.style.display = "inline"; + div.style.zoom = 1; + support.inlineBlockNeedsLayout = ( div.offsetWidth === 2 ); + + // Check if elements with layout shrink-wrap their children + // (IE 6 does this) + div.style.display = ""; + div.innerHTML = "<div style='width:4px;'></div>"; + support.shrinkWrapBlocks = ( div.offsetWidth !== 2 ); + } + + div.style.cssText = ptlm + vb; + div.innerHTML = html; + + outer = div.firstChild; + inner = outer.firstChild; + td = outer.nextSibling.firstChild.firstChild; + + offsetSupport = { + doesNotAddBorder: ( inner.offsetTop !== 5 ), + doesAddBorderForTableAndCells: ( td.offsetTop === 5 ) + }; + + inner.style.position = "fixed"; + inner.style.top = "20px"; + + // safari subtracts parent border width here which is 5px + offsetSupport.fixedPosition = ( inner.offsetTop === 20 || inner.offsetTop === 15 ); + inner.style.position = inner.style.top = ""; + + outer.style.overflow = "hidden"; + outer.style.position = "relative"; + + offsetSupport.subtractsBorderForOverflowNotVisible = ( inner.offsetTop === -5 ); + offsetSupport.doesNotIncludeMarginInBodyOffset = ( body.offsetTop !== conMarginTop ); + + body.removeChild( container ); + div = container = null; + + jQuery.extend( support, offsetSupport ); }); - // Technique from Juriy Zaytsev - // http://thinkweb2.com/projects/prototype/detecting-event-support-without-bro… - var eventSupported = function( eventName ) { - var el = document.createElement("div"); - eventName = "on" + eventName; - - // We only care about the case where non-standard event systems - // are used, namely in IE. Short-circuiting here helps us to - // avoid an eval call (in setAttribute) which can cause CSP - // to go haywire. See: https://developer.mozilla.org/en/Security/CSP - if ( !el.attachEvent ) { - return true; - } - - var isSupported = (eventName in el); - if ( !isSupported ) { - el.setAttribute(eventName, "return;"); - isSupported = typeof el[eventName] === "function"; - } - return isSupported; - }; - - jQuery.support.submitBubbles = eventSupported("submit"); - jQuery.support.changeBubbles = eventSupported("change"); - - // release memory in IE - div = all = a = null; + return support; })(); -var rbrace = /^(?:\{.*\}|\[.*\])$/; + +var rbrace = /^(?:\{.*\}|\[.*\])$/, + rmultiDash = /([A-Z])/g; jQuery.extend({ cache: {}, @@ -1344,7 +1641,6 @@ hasData: function( elem ) { elem = elem.nodeType ? jQuery.cache[ elem[jQuery.expando] ] : elem[ jQuery.expando ]; - return !!elem && !isEmptyDataObject( elem ); }, @@ -1353,7 +1649,9 @@ return; } - var internalKey = jQuery.expando, getByName = typeof name === "string", thisCache, + var privateCache, thisCache, ret, + internalKey = jQuery.expando, + getByName = typeof name === "string", // We have to handle DOM nodes and JS objects differently because IE6-7 // can't GC object references properly across the DOM-JS boundary @@ -1365,11 +1663,12 @@ // Only defining an ID for JS objects if its cache already exists allows // the code to shortcut on the same path as a DOM node with no cache - id = isNode ? elem[ jQuery.expando ] : elem[ jQuery.expando ] && jQuery.expando; + id = isNode ? elem[ internalKey ] : elem[ internalKey ] && internalKey, + isEvents = name === "events"; // Avoid doing any more work than we need to when trying to get data on an // object that has no data at all - if ( (!id || (pvt && id && !cache[ id ][ internalKey ])) && getByName && data === undefined ) { + if ( (!id || !cache[id] || (!isEvents && !pvt && !cache[id].data)) && getByName && data === undefined ) { return; } @@ -1377,18 +1676,17 @@ // Only DOM nodes need a new unique ID for each element since their data // ends up in the global cache if ( isNode ) { - elem[ jQuery.expando ] = id = ++jQuery.uuid; + elem[ internalKey ] = id = ++jQuery.uuid; } else { - id = jQuery.expando; + id = internalKey; } } if ( !cache[ id ] ) { cache[ id ] = {}; - // TODO: This is a hack for 1.5 ONLY. Avoids exposing jQuery - // metadata on plain JS objects when the object is serialized using - // JSON.stringify + // Avoids exposing jQuery metadata on plain JS objects when the object + // is serialized using JSON.stringify if ( !isNode ) { cache[ id ].toJSON = jQuery.noop; } @@ -1398,37 +1696,53 @@ // shallow copied over onto the existing cache if ( typeof name === "object" || typeof name === "function" ) { if ( pvt ) { - cache[ id ][ internalKey ] = jQuery.extend(cache[ id ][ internalKey ], name); + cache[ id ] = jQuery.extend( cache[ id ], name ); } else { - cache[ id ] = jQuery.extend(cache[ id ], name); - } - } - - thisCache = cache[ id ]; - - // Internal jQuery data is stored in a separate object inside the object's data + cache[ id ].data = jQuery.extend( cache[ id ].data, name ); + } + } + + privateCache = thisCache = cache[ id ]; + + // jQuery data() is stored in a separate object inside the object's internal data // cache in order to avoid key collisions between internal data and user-defined - // data - if ( pvt ) { - if ( !thisCache[ internalKey ] ) { - thisCache[ internalKey ] = {}; - } - - thisCache = thisCache[ internalKey ]; + // data. + if ( !pvt ) { + if ( !thisCache.data ) { + thisCache.data = {}; + } + + thisCache = thisCache.data; } if ( data !== undefined ) { - thisCache[ name ] = data; - } - - // TODO: This is a hack for 1.5 ONLY. It will be removed in 1.6. Users should - // not attempt to inspect the internal events object using jQuery.data, as this - // internal data object is undocumented and subject to change. - if ( name === "events" && !thisCache[name] ) { - return thisCache[ internalKey ] && thisCache[ internalKey ].events; - } - - return getByName ? thisCache[ name ] : thisCache; + thisCache[ jQuery.camelCase( name ) ] = data; + } + + // Users should not attempt to inspect the internal events object using jQuery.data, + // it is undocumented and subject to change. But does anyone listen? No. + if ( isEvents && !thisCache[ name ] ) { + return privateCache.events; + } + + // Check for both converted-to-camel and non-converted data property names + // If a data property was specified + if ( getByName ) { + + // First Try to find as-is property data + ret = thisCache[ name ]; + + // Test for null|undefined property data + if ( ret == null ) { + + // Try to find the camelCased property + ret = thisCache[ jQuery.camelCase( name ) ]; + } + } else { + ret = thisCache; + } + + return ret; }, removeData: function( elem, name, pvt /* Internal Use Only */ ) { @@ -1436,13 +1750,18 @@ return; } - var internalKey = jQuery.expando, isNode = elem.nodeType, + var thisCache, i, l, + + // Reference to internal data cache key + internalKey = jQuery.expando, + + isNode = elem.nodeType, // See jQuery.data for more information cache = isNode ? jQuery.cache : elem, // See jQuery.data for more information - id = isNode ? elem[ jQuery.expando ] : jQuery.expando; + id = isNode ? elem[ internalKey ] : internalKey; // If there is already no cache entry for this object, there is no // purpose in continuing @@ -1451,22 +1770,44 @@ } if ( name ) { - var thisCache = pvt ? cache[ id ][ internalKey ] : cache[ id ]; + + thisCache = pvt ? cache[ id ] : cache[ id ].data; if ( thisCache ) { - delete thisCache[ name ]; + + // Support array or space separated string names for data keys + if ( !jQuery.isArray( name ) ) { + + // try the string as a key before any manipulation + if ( name in thisCache ) { + name = [ name ]; + } else { + + // split the camel cased version by spaces unless a key with the spaces exists + name = jQuery.camelCase( name ); + if ( name in thisCache ) { + name = [ name ]; + } else { + name = name.split( " " ); + } + } + } + + for ( i = 0, l = name.length; i < l; i++ ) { + delete thisCache[ name[i] ]; + } // If there is no data left in the cache, we want to continue // and let the cache object itself get destroyed - if ( !isEmptyDataObject(thisCache) ) { + if ( !( pvt ? isEmptyDataObject : jQuery.isEmptyObject )( thisCache ) ) { return; } } } // See jQuery.data for more information - if ( pvt ) { - delete cache[ id ][ internalKey ]; + if ( !pvt ) { + delete cache[ id ].data; // Don't destroy the parent cache unless the internal data object // had been the only thing left in it @@ -1475,43 +1816,28 @@ } } - var internalCache = cache[ id ][ internalKey ]; - // Browsers that fail expando deletion also refuse to delete expandos on // the window, but it will allow it on all other JS objects; other browsers // don't care - if ( jQuery.support.deleteExpando || cache != window ) { + // Ensure that `cache` is not a window object #10080 + if ( jQuery.support.deleteExpando || !cache.setInterval ) { delete cache[ id ]; } else { cache[ id ] = null; } - // We destroyed the entire user cache at once because it's faster than - // iterating through each key, but we need to continue to persist internal - // data if it existed - if ( internalCache ) { - cache[ id ] = {}; - // TODO: This is a hack for 1.5 ONLY. Avoids exposing jQuery - // metadata on plain JS objects when the object is serialized using - // JSON.stringify - if ( !isNode ) { - cache[ id ].toJSON = jQuery.noop; - } - - cache[ id ][ internalKey ] = internalCache; - - // Otherwise, we need to eliminate the expando on the node to avoid + // We destroyed the cache and need to eliminate the expando on the node to avoid // false lookups in the cache for entries that no longer exist - } else if ( isNode ) { + if ( isNode ) { // IE does not allow us to delete expando properties from nodes, // nor does it have a removeAttribute function on Document nodes; // we must handle all of these cases if ( jQuery.support.deleteExpando ) { - delete elem[ jQuery.expando ]; + delete elem[ internalKey ]; } else if ( elem.removeAttribute ) { - elem.removeAttribute( jQuery.expando ); + elem.removeAttribute( internalKey ); } else { - elem[ jQuery.expando ] = null; + elem[ internalKey ] = null; } } }, @@ -1537,22 +1863,25 @@ jQuery.fn.extend({ data: function( key, value ) { - var data = null; + var parts, attr, name, + data = null; if ( typeof key === "undefined" ) { if ( this.length ) { data = jQuery.data( this[0] ); - if ( this[0].nodeType === 1 ) { - var attr = this[0].attributes, name; + if ( this[0].nodeType === 1 && !jQuery._data( this[0], "parsedAttrs" ) ) { + attr = this[0].attributes; for ( var i = 0, l = attr.length; i < l; i++ ) { name = attr[i].name; if ( name.indexOf( "data-" ) === 0 ) { - name = name.substr( 5 ); + name = jQuery.camelCase( name.substring(5) ); + dataAttr( this[0], name, data[ name ] ); } } + jQuery._data( this[0], "parsedAttrs", true ); } } @@ -1564,7 +1893,7 @@ }); } - var parts = key.split("."); + parts = key.split("."); parts[1] = parts[1] ? "." + parts[1] : ""; if ( value === undefined ) { @@ -1582,12 +1911,12 @@ } else { return this.each(function() { - var $this = jQuery( this ), + var self = jQuery( this ), args = [ parts[0], value ]; - $this.triggerHandler( "setData" + parts[1] + "!", args ); + self.triggerHandler( "setData" + parts[1] + "!", args ); jQuery.data( this, key, value ); - $this.triggerHandler( "changeData" + parts[1] + "!", args ); + self.triggerHandler( "changeData" + parts[1] + "!", args ); }); } }, @@ -1603,14 +1932,17 @@ // If nothing was found internally, try to fetch any // data from the HTML5 data-* attribute if ( data === undefined && elem.nodeType === 1 ) { - data = elem.getAttribute( "data-" + key ); + + var name = "data-" + key.replace( rmultiDash, "-$1" ).toLowerCase(); + + data = elem.getAttribute( name ); if ( typeof data === "string" ) { try { data = data === "true" ? true : data === "false" ? false : data === "null" ? null : - !jQuery.isNaN( data ) ? parseFloat( data ) : + jQuery.isNumeric( data ) ? parseFloat( data ) : rbrace.test( data ) ? jQuery.parseJSON( data ) : data; } catch( e ) {} @@ -1626,11 +1958,14 @@ return data; } -// TODO: This is a hack for 1.5 ONLY to allow objects with a single toJSON -// property to be considered empty objects; this property always exists in -// order to make sure JSON.stringify does not expose internal metadata +// checks a cache object for emptiness function isEmptyDataObject( obj ) { for ( var name in obj ) { + + // if the public data object is empty, the private is still empty + if ( name === "data" && jQuery.isEmptyObject( obj[name] ) ) { + continue; + } if ( name !== "toJSON" ) { return false; } @@ -1642,35 +1977,78 @@ +function handleQueueMarkDefer( elem, type, src ) { + var deferDataKey = type + "defer", + queueDataKey = type + "queue", + markDataKey = type + "mark", + defer = jQuery._data( elem, deferDataKey ); + if ( defer && + ( src === "queue" || !jQuery._data(elem, queueDataKey) ) && + ( src === "mark" || !jQuery._data(elem, markDataKey) ) ) { + // Give room for hard-coded callbacks to fire first + // and eventually mark/queue something else on the element + setTimeout( function() { + if ( !jQuery._data( elem, queueDataKey ) && + !jQuery._data( elem, markDataKey ) ) { + jQuery.removeData( elem, deferDataKey, true ); + defer.fire(); + } + }, 0 ); + } +} + jQuery.extend({ + + _mark: function( elem, type ) { + if ( elem ) { + type = ( type || "fx" ) + "mark"; + jQuery._data( elem, type, (jQuery._data( elem, type ) || 0) + 1 ); + } + }, + + _unmark: function( force, elem, type ) { + if ( force !== true ) { + type = elem; + elem = force; + force = false; + } + if ( elem ) { + type = type || "fx"; + var key = type + "mark", + count = force ? 0 : ( (jQuery._data( elem, key ) || 1) - 1 ); + if ( count ) { + jQuery._data( elem, key, count ); + } else { + jQuery.removeData( elem, key, true ); + handleQueueMarkDefer( elem, type, "mark" ); + } + } + }, + queue: function( elem, type, data ) { - if ( !elem ) { - return; - } - - type = (type || "fx") + "queue"; - var q = jQuery._data( elem, type ); - - // Speed up dequeue by getting out quickly if this is just a lookup - if ( !data ) { + var q; + if ( elem ) { + type = ( type || "fx" ) + "queue"; + q = jQuery._data( elem, type ); + + // Speed up dequeue by getting out quickly if this is just a lookup + if ( data ) { + if ( !q || jQuery.isArray(data) ) { + q = jQuery._data( elem, type, jQuery.makeArray(data) ); + } else { + q.push( data ); + } + } return q || []; } - - if ( !q || jQuery.isArray(data) ) { - q = jQuery._data( elem, type, jQuery.makeArray(data) ); - - } else { - q.push( data ); - } - - return q; }, dequeue: function( elem, type ) { type = type || "fx"; var queue = jQuery.queue( elem, type ), - fn = queue.shift(); + fn = queue.shift(), + hooks = {}; // If the fx queue is dequeued, always remove the progress sentinel if ( fn === "inprogress" ) { @@ -1681,16 +2059,18 @@ // Add a progress sentinel to prevent the fx queue from being // automatically dequeued if ( type === "fx" ) { - queue.unshift("inprogress"); - } - - fn.call(elem, function() { - jQuery.dequeue(elem, type); - }); + queue.unshift( "inprogress" ); + } + + jQuery._data( elem, type + ".run", hooks ); + fn.call( elem, function() { + jQuery.dequeue( elem, type ); + }, hooks ); } if ( !queue.length ) { - jQuery.removeData( elem, type + "queue", true ); + jQuery.removeData( elem, type + "queue " + type + ".run", true ); + handleQueueMarkDefer( elem, type, "queue" ); } } }); @@ -1705,7 +2085,7 @@ if ( data === undefined ) { return jQuery.queue( this[0], type ); } - return this.each(function( i ) { + return this.each(function() { var queue = jQuery.queue( this, type, data ); if ( type === "fx" && queue[0] !== "inprogress" ) { @@ -1718,23 +2098,54 @@ jQuery.dequeue( this, type ); }); }, - // Based off of the plugin by Clint Helfers, with permission. // http://blindsignals.com/index.php/2009/07/jquery-delay/ delay: function( time, type ) { - time = jQuery.fx ? jQuery.fx.speeds[time] || time : time; + time = jQuery.fx ? jQuery.fx.speeds[ time ] || time : time; type = type || "fx"; - return this.queue( type, function() { - var elem = this; - setTimeout(function() { - jQuery.dequeue( elem, type ); - }, time ); + return this.queue( type, function( next, hooks ) { + var timeout = setTimeout( next, time ); + hooks.stop = function() { + clearTimeout( timeout ); + }; }); }, - clearQueue: function( type ) { return this.queue( type || "fx", [] ); + }, + // Get a promise resolved when queues of a certain type + // are emptied (fx is the type by default) + promise: function( type, object ) { + if ( typeof type !== "string" ) { + object = type; + type = undefined; + } + type = type || "fx"; + var defer = jQuery.Deferred(), + elements = this, + i = elements.length, + count = 1, + deferDataKey = type + "defer", + queueDataKey = type + "queue", + markDataKey = type + "mark", + tmp; + function resolve() { + if ( !( --count ) ) { + defer.resolveWith( elements, [ elements ] ); + } + } + while( i-- ) { + if (( tmp = jQuery.data( elements[ i ], deferDataKey, undefined, true ) || + ( jQuery.data( elements[ i ], queueDataKey, undefined, true ) || + jQuery.data( elements[ i ], markDataKey, undefined, true ) ) && + jQuery.data( elements[ i ], deferDataKey, jQuery.Callbacks( "once memory" ), true ) )) { + count++; + tmp.add( resolve ); + } + } + resolve(); + return defer.promise(); } }); @@ -1742,66 +2153,67 @@ var rclass = /[\n\t\r]/g, - rspaces = /\s+/, + rspace = /\s+/, rreturn = /\r/g, - rspecialurl = /^(?:href|src|style)$/, rtype = /^(?:button|input)$/i, rfocusable = /^(?:button|input|object|select|textarea)$/i, rclickable = /^a(?:rea)?$/i, - rradiocheck = /^(?:radio|checkbox)$/i; - -jQuery.props = { - "for": "htmlFor", - "class": "className", - readonly: "readOnly", - maxlength: "maxLength", - cellspacing: "cellSpacing", - rowspan: "rowSpan", - colspan: "colSpan", - tabindex: "tabIndex", - usemap: "useMap", - frameborder: "frameBorder" -}; + rboolean = /^(?:autofocus|autoplay|async|checked|controls|defer|disabled|hidden|loop|multiple|open|readonly|required|scoped|selected)$/i, + getSetAttribute = jQuery.support.getSetAttribute, + nodeHook, boolHook, fixSpecified; jQuery.fn.extend({ attr: function( name, value ) { return jQuery.access( this, name, value, true, jQuery.attr ); }, - removeAttr: function( name, fn ) { - return this.each(function(){ - jQuery.attr( this, name, "" ); - if ( this.nodeType === 1 ) { - this.removeAttribute( name ); - } + removeAttr: function( name ) { + return this.each(function() { + jQuery.removeAttr( this, name ); }); }, + prop: function( name, value ) { + return jQuery.access( this, name, value, true, jQuery.prop ); + }, + + removeProp: function( name ) { + name = jQuery.propFix[ name ] || name; + return this.each(function() { + // try/catch handles cases where IE balks (such as removing a property on window) + try { + this[ name ] = undefined; + delete this[ name ]; + } catch( e ) {} + }); + }, + addClass: function( value ) { - if ( jQuery.isFunction(value) ) { - return this.each(function(i) { - var self = jQuery(this); - self.addClass( value.call(this, i, self.attr("class")) ); + var classNames, i, l, elem, + setClass, c, cl; + + if ( jQuery.isFunction( value ) ) { + return this.each(function( j ) { + jQuery( this ).addClass( value.call(this, j, this.className) ); }); } if ( value && typeof value === "string" ) { - var classNames = (value || "").split( rspaces ); - - for ( var i = 0, l = this.length; i < l; i++ ) { - var elem = this[i]; + classNames = value.split( rspace ); + + for ( i = 0, l = this.length; i < l; i++ ) { + elem = this[ i ]; if ( elem.nodeType === 1 ) { - if ( !elem.className ) { + if ( !elem.className && classNames.length === 1 ) { elem.className = value; } else { - var className = " " + elem.className + " ", - setClass = elem.className; - - for ( var c = 0, cl = classNames.length; c < cl; c++ ) { - if ( className.indexOf( " " + classNames[c] + " " ) < 0 ) { - setClass += " " + classNames[c]; + setClass = " " + elem.className + " "; + + for ( c = 0, cl = classNames.length; c < cl; c++ ) { + if ( !~setClass.indexOf( " " + classNames[ c ] + " " ) ) { + setClass += classNames[ c ] + " "; } } elem.className = jQuery.trim( setClass ); @@ -1814,24 +2226,25 @@ }, removeClass: function( value ) { - if ( jQuery.isFunction(value) ) { - return this.each(function(i) { - var self = jQuery(this); - self.removeClass( value.call(this, i, self.attr("class")) ); + var classNames, i, l, elem, className, c, cl; + + if ( jQuery.isFunction( value ) ) { + return this.each(function( j ) { + jQuery( this ).removeClass( value.call(this, j, this.className) ); }); } if ( (value && typeof value === "string") || value === undefined ) { - var classNames = (value || "").split( rspaces ); - - for ( var i = 0, l = this.length; i < l; i++ ) { - var elem = this[i]; + classNames = ( value || "" ).split( rspace ); + + for ( i = 0, l = this.length; i < l; i++ ) { + elem = this[ i ]; if ( elem.nodeType === 1 && elem.className ) { if ( value ) { - var className = (" " + elem.className + " ").replace(rclass, " "); - for ( var c = 0, cl = classNames.length; c < cl; c++ ) { - className = className.replace(" " + classNames[c] + " ", " "); + className = (" " + elem.className + " ").replace( rclass, " " ); + for ( c = 0, cl = classNames.length; c < cl; c++ ) { + className = className.replace(" " + classNames[ c ] + " ", " "); } elem.className = jQuery.trim( className ); @@ -1850,9 +2263,8 @@ isBool = typeof stateVal === "boolean"; if ( jQuery.isFunction( value ) ) { - return this.each(function(i) { - var self = jQuery(this); - self.toggleClass( value.call(this, i, self.attr("class"), stateVal), stateVal ); + return this.each(function( i ) { + jQuery( this ).toggleClass( value.call(this, i, this.className, stateVal), stateVal ); }); } @@ -1863,7 +2275,7 @@ i = 0, self = jQuery( this ), state = stateVal, - classNames = value.split( rspaces ); + classNames = value.split( rspace ); while ( (className = classNames[ i++ ]) ) { // check each className given, space seperated list @@ -1884,9 +2296,11 @@ }, hasClass: function( selector ) { - var className = " " + selector + " "; - for ( var i = 0, l = this.length; i < l; i++ ) { - if ( (" " + this[i].className + " ").replace(rclass, " ").indexOf( className ) > -1 ) { + var className = " " + selector + " ", + i = 0, + l = this.length; + for ( ; i < l; i++ ) { + if ( this[i].nodeType === 1 && (" " + this[i].className + " ").replace(rclass, " ").indexOf( className ) > -1 ) { return true; } } @@ -1895,82 +2309,42 @@ }, val: function( value ) { + var hooks, ret, isFunction, + elem = this[0]; + if ( !arguments.length ) { - var elem = this[0]; - if ( elem ) { - if ( jQuery.nodeName( elem, "option" ) ) { - // attributes.value is undefined in Blackberry 4.7 but - // uses .value. See #6932 - var val = elem.attributes.value; - return !val || val.specified ? elem.value : elem.text; - } - - // We need to handle select boxes special - if ( jQuery.nodeName( elem, "select" ) ) { - var index = elem.selectedIndex, - values = [], - options = elem.options, - one = elem.type === "select-one"; - - // Nothing was selected - if ( index < 0 ) { - return null; - } - - // Loop through all the selected options - for ( var i = one ? index : 0, max = one ? index + 1 : options.length; i < max; i++ ) { - var option = options[ i ]; - - // Don't return options that are disabled or in a disabled optgroup - if ( option.selected && (jQuery.support.optDisabled ? !option.disabled : option.getAttribute("disabled") === null) && - (!option.parentNode.disabled || !jQuery.nodeName( option.parentNode, "optgroup" )) ) { - - // Get the specific value for the option - value = jQuery(option).val(); - - // We don't need an array for one selects - if ( one ) { - return value; - } - - // Multi-Selects return an array - values.push( value ); - } - } - - // Fixes Bug #2551 -- select.val() broken in IE after form.reset() - if ( one && !values.length && options.length ) { - return jQuery( options[ index ] ).val(); - } - - return values; - } - - // Handle the case where in Webkit "" is returned instead of "on" if a value isn't specified - if ( rradiocheck.test( elem.type ) && !jQuery.support.checkOn ) { - return elem.getAttribute("value") === null ? "on" : elem.value; - } - - // Everything else, we just grab the value - return (elem.value || "").replace(rreturn, ""); - - } - - return undefined; - } - - var isFunction = jQuery.isFunction(value); - - return this.each(function(i) { - var self = jQuery(this), val = value; + hooks = jQuery.valHooks[ elem.nodeName.toLowerCase() ] || jQuery.valHooks[ elem.type ]; + + if ( hooks && "get" in hooks && (ret = hooks.get( elem, "value" )) !== undefined ) { + return ret; + } + + ret = elem.value; + + return typeof ret === "string" ? + // handle most common string cases + ret.replace(rreturn, "") : + // handle cases where value is null/undef or number + ret == null ? "" : ret; + } + + return; + } + + isFunction = jQuery.isFunction( value ); + + return this.each(function( i ) { + var self = jQuery(this), val; if ( this.nodeType !== 1 ) { return; } if ( isFunction ) { - val = value.call(this, i, self.val()); + val = value.call( this, i, self.val() ); + } else { + val = value; } // Treat null/undefined as ""; convert numbers to string @@ -1978,34 +2352,91 @@ val = ""; } else if ( typeof val === "number" ) { val += ""; - } else if ( jQuery.isArray(val) ) { - val = jQuery.map(val, function (value) { + } else if ( jQuery.isArray( val ) ) { + val = jQuery.map(val, function ( value ) { return value == null ? "" : value + ""; }); } - if ( jQuery.isArray(val) && rradiocheck.test( this.type ) ) { - this.checked = jQuery.inArray( self.val(), val ) >= 0; - - } else if ( jQuery.nodeName( this, "select" ) ) { - var values = jQuery.makeArray(val); - - jQuery( "option", this ).each(function() { + hooks = jQuery.valHooks[ this.nodeName.toLowerCase() ] || jQuery.valHooks[ this.type ]; + + // If set returns undefined, fall back to normal setting + if ( !hooks || !("set" in hooks) || hooks.set( this, val, "value" ) === undefined ) { + this.value = val; + } + }); + } +}); + +jQuery.extend({ + valHooks: { + option: { + get: function( elem ) { + // attributes.value is undefined in Blackberry 4.7 but + // uses .value. See #6932 + var val = elem.attributes.value; + return !val || val.specified ? elem.value : elem.text; + } + }, + select: { + get: function( elem ) { + var value, i, max, option, + index = elem.selectedIndex, + values = [], + options = elem.options, + one = elem.type === "select-one"; + + // Nothing was selected + if ( index < 0 ) { + return null; + } + + // Loop through all the selected options + i = one ? index : 0; + max = one ? index + 1 : options.length; + for ( ; i < max; i++ ) { + option = options[ i ]; + + // Don't return options that are disabled or in a disabled optgroup + if ( option.selected && (jQuery.support.optDisabled ? !option.disabled : option.getAttribute("disabled") === null) && + (!option.parentNode.disabled || !jQuery.nodeName( option.parentNode, "optgroup" )) ) { + + // Get the specific value for the option + value = jQuery( option ).val(); + + // We don't need an array for one selects + if ( one ) { + return value; + } + + // Multi-Selects return an array + values.push( value ); + } + } + + // Fixes Bug #2551 -- select.val() broken in IE after form.reset() + if ( one && !values.length && options.length ) { + return jQuery( options[ index ] ).val(); + } + + return values; + }, + + set: function( elem, value ) { + var values = jQuery.makeArray( value ); + + jQuery(elem).find("option").each(function() { this.selected = jQuery.inArray( jQuery(this).val(), values ) >= 0; }); if ( !values.length ) { - this.selectedIndex = -1; - } - - } else { - this.value = val; - } - }); - } -}); - -jQuery.extend({ + elem.selectedIndex = -1; + } + return values; + } + } + }, + attrFn: { val: true, css: true, @@ -2018,239 +2449,473 @@ }, attr: function( elem, name, value, pass ) { + var ret, hooks, notxml, + nType = elem.nodeType; + // don't get/set attributes on text, comment and attribute nodes - if ( !elem || elem.nodeType === 3 || elem.nodeType === 8 || elem.nodeType === 2 ) { - return undefined; + if ( !elem || nType === 3 || nType === 8 || nType === 2 ) { + return; } if ( pass && name in jQuery.attrFn ) { - return jQuery(elem)[name](value); - } - - var notxml = elem.nodeType !== 1 || !jQuery.isXMLDoc( elem ), - // Whether we are setting (or getting) - set = value !== undefined; - - // Try to normalize/fix the name - name = notxml && jQuery.props[ name ] || name; - - // Only do all the following if this is a node (faster for style) - if ( elem.nodeType === 1 ) { - // These attributes require special treatment - var special = rspecialurl.test( name ); - - // Safari mis-reports the default selected property of an option - // Accessing the parent's selectedIndex property fixes it - if ( name === "selected" && !jQuery.support.optSelected ) { - var parent = elem.parentNode; - if ( parent ) { - parent.selectedIndex; - - // Make sure that it also works with optgroups, see #5701 - if ( parent.parentNode ) { - parent.parentNode.selectedIndex; + return jQuery( elem )[ name ]( value ); + } + + // Fallback to prop when attributes are not supported + if ( typeof elem.getAttribute === "undefined" ) { + return jQuery.prop( elem, name, value ); + } + + notxml = nType !== 1 || !jQuery.isXMLDoc( elem ); + + // All attributes are lowercase + // Grab necessary hook if one is defined + if ( notxml ) { + name = name.toLowerCase(); + hooks = jQuery.attrHooks[ name ] || ( rboolean.test( name ) ? boolHook : nodeHook ); + } + + if ( value !== undefined ) { + + if ( value === null ) { + jQuery.removeAttr( elem, name ); + return; + + } else if ( hooks && "set" in hooks && notxml && (ret = hooks.set( elem, value, name )) !== undefined ) { + return ret; + + } else { + elem.setAttribute( name, "" + value ); + return value; + } + + } else if ( hooks && "get" in hooks && notxml && (ret = hooks.get( elem, name )) !== null ) { + return ret; + + } else { + + ret = elem.getAttribute( name ); + + // Non-existent attributes return null, we normalize to undefined + return ret === null ? + undefined : + ret; + } + }, + + removeAttr: function( elem, value ) { + var propName, attrNames, name, l, + i = 0; + + if ( value && elem.nodeType === 1 ) { + attrNames = value.toLowerCase().split( rspace ); + l = attrNames.length; + + for ( ; i < l; i++ ) { + name = attrNames[ i ]; + + if ( name ) { + propName = jQuery.propFix[ name ] || name; + + // See #9699 for explanation of this approach (setting first, then removal) + jQuery.attr( elem, name, "" ); + elem.removeAttribute( getSetAttribute ? name : propName ); + + // Set corresponding property to false for boolean attributes + if ( rboolean.test( name ) && propName in elem ) { + elem[ propName ] = false; } } } - - // If applicable, access the attribute via the DOM 0 way - // 'in' checks fail in Blackberry 4.7 #6931 - if ( (name in elem || elem[ name ] !== undefined) && notxml && !special ) { - if ( set ) { - // We can't allow the type property to be changed (since it causes problems in IE) - if ( name === "type" && rtype.test( elem.nodeName ) && elem.parentNode ) { - jQuery.error( "type property can't be changed" ); + } + }, + + attrHooks: { + type: { + set: function( elem, value ) { + // We can't allow the type property to be changed (since it causes problems in IE) + if ( rtype.test( elem.nodeName ) && elem.parentNode ) { + jQuery.error( "type property can't be changed" ); + } else if ( !jQuery.support.radioValue && value === "radio" && jQuery.nodeName(elem, "input") ) { + // Setting the type on a radio button after the value resets the value in IE6-9 + // Reset value to it's default in case type is set after value + // This is for element creation + var val = elem.value; + elem.setAttribute( "type", value ); + if ( val ) { + elem.value = val; } - - if ( value === null ) { - if ( elem.nodeType === 1 ) { - elem.removeAttribute( name ); - } - - } else { - elem[ name ] = value; - } - } - - // browsers index elements by id/name on forms, give priority to attributes. - if ( jQuery.nodeName( elem, "form" ) && elem.getAttributeNode(name) ) { - return elem.getAttributeNode( name ).nodeValue; - } - + return value; + } + } + }, + // Use the value property for back compat + // Use the nodeHook for button elements in IE6/7 (#1954) + value: { + get: function( elem, name ) { + if ( nodeHook && jQuery.nodeName( elem, "button" ) ) { + return nodeHook.get( elem, name ); + } + return name in elem ? + elem.value : + null; + }, + set: function( elem, value, name ) { + if ( nodeHook && jQuery.nodeName( elem, "button" ) ) { + return nodeHook.set( elem, value, name ); + } + // Does not return so that setAttribute is also used + elem.value = value; + } + } + }, + + propFix: { + tabindex: "tabIndex", + readonly: "readOnly", + "for": "htmlFor", + "class": "className", + maxlength: "maxLength", + cellspacing: "cellSpacing", + cellpadding: "cellPadding", + rowspan: "rowSpan", + colspan: "colSpan", + usemap: "useMap", + frameborder: "frameBorder", + contenteditable: "contentEditable" + }, + + prop: function( elem, name, value ) { + var ret, hooks, notxml, + nType = elem.nodeType; + + // don't get/set properties on text, comment and attribute nodes + if ( !elem || nType === 3 || nType === 8 || nType === 2 ) { + return; + } + + notxml = nType !== 1 || !jQuery.isXMLDoc( elem ); + + if ( notxml ) { + // Fix name and attach hooks + name = jQuery.propFix[ name ] || name; + hooks = jQuery.propHooks[ name ]; + } + + if ( value !== undefined ) { + if ( hooks && "set" in hooks && (ret = hooks.set( elem, value, name )) !== undefined ) { + return ret; + + } else { + return ( elem[ name ] = value ); + } + + } else { + if ( hooks && "get" in hooks && (ret = hooks.get( elem, name )) !== null ) { + return ret; + + } else { + return elem[ name ]; + } + } + }, + + propHooks: { + tabIndex: { + get: function( elem ) { // elem.tabIndex doesn't always return the correct value when it hasn't been explicitly set // http://fluidproject.org/blog/2008/01/09/getting-setting-and-removing-tabind… - if ( name === "tabIndex" ) { - var attributeNode = elem.getAttributeNode( "tabIndex" ); - - return attributeNode && attributeNode.specified ? - attributeNode.value : - rfocusable.test( elem.nodeName ) || rclickable.test( elem.nodeName ) && elem.href ? - 0 : - undefined; - } - - return elem[ name ]; - } - - if ( !jQuery.support.style && notxml && name === "style" ) { - if ( set ) { - elem.style.cssText = "" + value; - } - - return elem.style.cssText; - } - - if ( set ) { - // convert the value to a string (all browsers do this but IE) see #1070 - elem.setAttribute( name, "" + value ); - } - - // Ensure that missing attributes return undefined - // Blackberry 4.7 returns "" from getAttribute #6938 - if ( !elem.attributes[ name ] && (elem.hasAttribute && !elem.hasAttribute( name )) ) { - return undefined; - } - - var attr = !jQuery.support.hrefNormalized && notxml && special ? - // Some attributes require a special call on IE - elem.getAttribute( name, 2 ) : - elem.getAttribute( name ); - - // Non-existent attributes return null, we normalize to undefined - return attr === null ? undefined : attr; - } - // Handle everything which isn't a DOM element node - if ( set ) { - elem[ name ] = value; - } - return elem[ name ]; + var attributeNode = elem.getAttributeNode("tabindex"); + + return attributeNode && attributeNode.specified ? + parseInt( attributeNode.value, 10 ) : + rfocusable.test( elem.nodeName ) || rclickable.test( elem.nodeName ) && elem.href ? + 0 : + undefined; + } + } } }); - - - -var rnamespaces = /\.(.*)$/, - rformElems = /^(?:textarea|input|select)$/i, - rperiod = /\./g, - rspace = / /g, - rescape = /[^\w\s.|`]/g, - fcleanup = function( nm ) { - return nm.replace(rescape, "\\$&"); +// Add the tabIndex propHook to attrHooks for back-compat (different case is intentional) +jQuery.attrHooks.tabindex = jQuery.propHooks.tabIndex; + +// Hook for boolean attributes +boolHook = { + get: function( elem, name ) { + // Align boolean attributes with corresponding properties + // Fall back to attribute presence where some booleans are not supported + var attrNode, + property = jQuery.prop( elem, name ); + return property === true || typeof property !== "boolean" && ( attrNode = elem.getAttributeNode(name) ) && attrNode.nodeValue !== false ? + name.toLowerCase() : + undefined; + }, + set: function( elem, value, name ) { + var propName; + if ( value === false ) { + // Remove boolean attributes when set to false + jQuery.removeAttr( elem, name ); + } else { + // value is true since we know at this point it's type boolean and not false + // Set boolean attributes to the same name and set the DOM property + propName = jQuery.propFix[ name ] || name; + if ( propName in elem ) { + // Only set the IDL specifically if it already exists on the element + elem[ propName ] = true; + } + + elem.setAttribute( name, name.toLowerCase() ); + } + return name; + } +}; + +// IE6/7 do not support getting/setting some attributes with get/setAttribute +if ( !getSetAttribute ) { + + fixSpecified = { + name: true, + id: true }; + // Use this for any attribute in IE6/7 + // This fixes almost every IE6/7 issue + nodeHook = jQuery.valHooks.button = { + get: function( elem, name ) { + var ret; + ret = elem.getAttributeNode( name ); + return ret && ( fixSpecified[ name ] ? ret.nodeValue !== "" : ret.specified ) ? + ret.nodeValue : + undefined; + }, + set: function( elem, value, name ) { + // Set the existing or create a new attribute node + var ret = elem.getAttributeNode( name ); + if ( !ret ) { + ret = document.createAttribute( name ); + elem.setAttributeNode( ret ); + } + return ( ret.nodeValue = value + "" ); + } + }; + + // Apply the nodeHook to tabindex + jQuery.attrHooks.tabindex.set = nodeHook.set; + + // Set width and height to auto instead of 0 on empty string( Bug #8150 ) + // This is for removals + jQuery.each([ "width", "height" ], function( i, name ) { + jQuery.attrHooks[ name ] = jQuery.extend( jQuery.attrHooks[ name ], { + set: function( elem, value ) { + if ( value === "" ) { + elem.setAttribute( name, "auto" ); + return value; + } + } + }); + }); + + // Set contenteditable to false on removals(#10429) + // Setting to empty string throws an error as an invalid value + jQuery.attrHooks.contenteditable = { + get: nodeHook.get, + set: function( elem, value, name ) { + if ( value === "" ) { + value = "false"; + } + nodeHook.set( elem, value, name ); + } + }; +} + + +// Some attributes require a special call on IE +if ( !jQuery.support.hrefNormalized ) { + jQuery.each([ "href", "src", "width", "height" ], function( i, name ) { + jQuery.attrHooks[ name ] = jQuery.extend( jQuery.attrHooks[ name ], { + get: function( elem ) { + var ret = elem.getAttribute( name, 2 ); + return ret === null ? undefined : ret; + } + }); + }); +} + +if ( !jQuery.support.style ) { + jQuery.attrHooks.style = { + get: function( elem ) { + // Return undefined in the case of empty string + // Normalize to lowercase since IE uppercases css property names + return elem.style.cssText.toLowerCase() || undefined; + }, + set: function( elem, value ) { + return ( elem.style.cssText = "" + value ); + } + }; +} + +// Safari mis-reports the default selected property of an option +// Accessing the parent's selectedIndex property fixes it +if ( !jQuery.support.optSelected ) { + jQuery.propHooks.selected = jQuery.extend( jQuery.propHooks.selected, { + get: function( elem ) { + var parent = elem.parentNode; + + if ( parent ) { + parent.selectedIndex; + + // Make sure that it also works with optgroups, see #5701 + if ( parent.parentNode ) { + parent.parentNode.selectedIndex; + } + } + return null; + } + }); +} + +// IE6/7 call enctype encoding +if ( !jQuery.support.enctype ) { + jQuery.propFix.enctype = "encoding"; +} + +// Radios and checkboxes getter/setter +if ( !jQuery.support.checkOn ) { + jQuery.each([ "radio", "checkbox" ], function() { + jQuery.valHooks[ this ] = { + get: function( elem ) { + // Handle the case where in Webkit "" is returned instead of "on" if a value isn't specified + return elem.getAttribute("value") === null ? "on" : elem.value; + } + }; + }); +} +jQuery.each([ "radio", "checkbox" ], function() { + jQuery.valHooks[ this ] = jQuery.extend( jQuery.valHooks[ this ], { + set: function( elem, value ) { + if ( jQuery.isArray( value ) ) { + return ( elem.checked = jQuery.inArray( jQuery(elem).val(), value ) >= 0 ); + } + } + }); +}); + + + + +var rformElems = /^(?:textarea|input|select)$/i, + rtypenamespace = /^([^\.]*)?(?:\.(.+))?$/, + rhoverHack = /\bhover(\.\S+)?\b/, + rkeyEvent = /^key/, + rmouseEvent = /^(?:mouse|contextmenu)|click/, + rfocusMorph = /^(?:focusinfocus|focusoutblur)$/, + rquickIs = /^(\w*)(?:#([\w\-]+))?(?:\.([\w\-]+))?$/, + quickParse = function( selector ) { + var quick = rquickIs.exec( selector ); + if ( quick ) { + // 0 1 2 3 + // [ _, tag, id, class ] + quick[1] = ( quick[1] || "" ).toLowerCase(); + quick[3] = quick[3] && new RegExp( "(?:^|\\s)" + quick[3] + "(?:\\s|$)" ); + } + return quick; + }, + quickIs = function( elem, m ) { + var attrs = elem.attributes || {}; + return ( + (!m[1] || elem.nodeName.toLowerCase() === m[1]) && + (!m[2] || (attrs.id || {}).value === m[2]) && + (!m[3] || m[3].test( (attrs[ "class" ] || {}).value )) + ); + }, + hoverHack = function( events ) { + return jQuery.event.special.hover ? events : events.replace( rhoverHack, "mouseenter$1 mouseleave$1" ); + }; + /* - * A number of helper functions used for managing events. - * Many of the ideas behind this code originated from - * Dean Edwards' addEvent library. + * Helper functions for managing events -- not part of the public interface. + * Props to Dean Edwards' addEvent library for many of the ideas. */ jQuery.event = { - // Bind an event to an element - // Original by Dean Edwards - add: function( elem, types, handler, data ) { - if ( elem.nodeType === 3 || elem.nodeType === 8 ) { + add: function( elem, types, handler, data, selector ) { + + var elemData, eventHandle, events, + t, tns, type, namespaces, handleObj, + handleObjIn, quick, handlers, special; + + // Don't attach events to noData or text/comment nodes (allow plain objects tho) + if ( elem.nodeType === 3 || elem.nodeType === 8 || !types || !handler || !(elemData = jQuery._data( elem )) ) { return; } - // TODO :: Use a try/catch until it's safe to pull this out (likely 1.6) - // Minor release fix for bug #8018 - try { - // For whatever reason, IE has trouble passing the window object - // around, causing it to be cloned in the process - if ( jQuery.isWindow( elem ) && ( elem !== window && !elem.frameElement ) ) { - elem = window; - } - } - catch ( e ) {} - - if ( handler === false ) { - handler = returnFalse; - } else if ( !handler ) { - // Fixes bug #7229. Fix recommended by jdalton - return; - } - - var handleObjIn, handleObj; - + // Caller can pass in an object of custom data in lieu of the handler if ( handler.handler ) { handleObjIn = handler; handler = handleObjIn.handler; } - // Make sure that the function being executed has a unique ID + // Make sure that the handler has a unique ID, used to find/remove it later if ( !handler.guid ) { handler.guid = jQuery.guid++; } - // Init the element's event structure - var elemData = jQuery._data( elem ); - - // If no elemData is found then we must be trying to bind to one of the - // banned noData elements - if ( !elemData ) { - return; - } - - var events = elemData.events, - eventHandle = elemData.handle; - + // Init the element's event structure and main handler, if this is the first + events = elemData.events; if ( !events ) { elemData.events = events = {}; } - + eventHandle = elemData.handle; if ( !eventHandle ) { elemData.handle = eventHandle = function( e ) { - // Handle the second event of a trigger and when - // an event is called after a page has unloaded - return typeof jQuery !== "undefined" && jQuery.event.triggered !== e.type ? - jQuery.event.handle.apply( eventHandle.elem, arguments ) : + // Discard the second event of a jQuery.event.trigger() and + // when an event is called after a page has unloaded + return typeof jQuery !== "undefined" && (!e || jQuery.event.triggered !== e.type) ? + jQuery.event.dispatch.apply( eventHandle.elem, arguments ) : undefined; }; - } - - // Add elem as a property of the handle function - // This is to prevent a memory leak with non-native events in IE. - eventHandle.elem = elem; + // Add elem as a property of the handle fn to prevent a memory leak with IE non-native events + eventHandle.elem = elem; + } // Handle multiple events separated by a space // jQuery(...).bind("mouseover mouseout", fn); - types = types.split(" "); - - var type, i = 0, namespaces; - - while ( (type = types[ i++ ]) ) { - handleObj = handleObjIn ? - jQuery.extend({}, handleObjIn) : - { handler: handler, data: data }; - - // Namespaced event handlers - if ( type.indexOf(".") > -1 ) { - namespaces = type.split("."); - type = namespaces.shift(); - handleObj.namespace = namespaces.slice(0).sort().join("."); - - } else { - namespaces = []; - handleObj.namespace = ""; - } - - handleObj.type = type; - if ( !handleObj.guid ) { - handleObj.guid = handler.guid; - } - - // Get the current list of functions bound to this event - var handlers = events[ type ], - special = jQuery.event.special[ type ] || {}; - - // Init the event handler queue + types = jQuery.trim( hoverHack(types) ).split( " " ); + for ( t = 0; t < types.length; t++ ) { + + tns = rtypenamespace.exec( types[t] ) || []; + type = tns[1]; + namespaces = ( tns[2] || "" ).split( "." ).sort(); + + // If event changes its type, use the special event handlers for the changed type + special = jQuery.event.special[ type ] || {}; + + // If selector defined, determine special event api type, otherwise given type + type = ( selector ? special.delegateType : special.bindType ) || type; + + // Update special based on newly reset type + special = jQuery.event.special[ type ] || {}; + + // handleObj is passed to all event handlers + handleObj = jQuery.extend({ + type: type, + origType: tns[1], + data: data, + handler: handler, + guid: handler.guid, + selector: selector, + quick: quickParse( selector ), + namespace: namespaces.join(".") + }, handleObjIn ); + + // Init the event handler queue if we're the first + handlers = events[ type ]; if ( !handlers ) { handlers = events[ type ] = []; - - // Check for a special event handler - // Only use addEventListener/attachEvent if the special - // events handler returns false + handlers.delegateCount = 0; + + // Only use addEventListener/attachEvent if the special events handler returns false if ( !special.setup || special.setup.call( elem, data, namespaces, eventHandle ) === false ) { // Bind the global event handler to the element if ( elem.addEventListener ) { @@ -2270,10 +2935,14 @@ } } - // Add the function to the element's handler list - handlers.push( handleObj ); - - // Keep track of which events have been used, for global triggering + // Add to the element's handler list, delegates in front + if ( selector ) { + handlers.splice( handlers.delegateCount++, 0, handleObj ); + } else { + handlers.push( handleObj ); + } + + // Keep track of which events have ever been used, for event optimization jQuery.event.global[ type ] = true; } @@ -2284,288 +2953,307 @@ global: {}, // Detach an event or set of events from an element - remove: function( elem, types, handler, pos ) { - // don't do events on text and comment nodes - if ( elem.nodeType === 3 || elem.nodeType === 8 ) { + remove: function( elem, types, handler, selector, mappedTypes ) { + + var elemData = jQuery.hasData( elem ) && jQuery._data( elem ), + t, tns, type, origType, namespaces, origCount, + j, events, special, handle, eventType, handleObj; + + if ( !elemData || !(events = elemData.events) ) { return; } - if ( handler === false ) { - handler = returnFalse; - } - - var ret, type, fn, j, i = 0, all, namespaces, namespace, special, eventType, handleObj, origType, - elemData = jQuery.hasData( elem ) && jQuery._data( elem ), - events = elemData && elemData.events; - - if ( !elemData || !events ) { - return; - } - - // types is actually an event object here - if ( types && types.type ) { - handler = types.handler; - types = types.type; - } - - // Unbind all events for the element - if ( !types || typeof types === "string" && types.charAt(0) === "." ) { - types = types || ""; - - for ( type in events ) { - jQuery.event.remove( elem, type + types ); - } - - return; - } - - // Handle multiple events separated by a space - // jQuery(...).unbind("mouseover mouseout", fn); - types = types.split(" "); - - while ( (type = types[ i++ ]) ) { - origType = type; - handleObj = null; - all = type.indexOf(".") < 0; - namespaces = []; - - if ( !all ) { - // Namespaced event handlers - namespaces = type.split("."); - type = namespaces.shift(); - - namespace = new RegExp("(^|\\.)" + - jQuery.map( namespaces.slice(0).sort(), fcleanup ).join("\\.(?:.*\\.)?") + "(\\.|$)"); - } - - eventType = events[ type ]; - - if ( !eventType ) { + // Once for each type.namespace in types; type may be omitted + types = jQuery.trim( hoverHack( types || "" ) ).split(" "); + for ( t = 0; t < types.length; t++ ) { + tns = rtypenamespace.exec( types[t] ) || []; + type = origType = tns[1]; + namespaces = tns[2]; + + // Unbind all events (on this namespace, if provided) for the element + if ( !type ) { + for ( type in events ) { + jQuery.event.remove( elem, type + types[ t ], handler, selector, true ); + } continue; } - if ( !handler ) { - for ( j = 0; j < eventType.length; j++ ) { - handleObj = eventType[ j ]; - - if ( all || namespace.test( handleObj.namespace ) ) { - jQuery.event.remove( elem, origType, handleObj.handler, j ); - eventType.splice( j--, 1 ); + special = jQuery.event.special[ type ] || {}; + type = ( selector? special.delegateType : special.bindType ) || type; + eventType = events[ type ] || []; + origCount = eventType.length; + namespaces = namespaces ? new RegExp("(^|\\.)" + namespaces.split(".").sort().join("\\.(?:.*\\.)?") + "(\\.|$)") : null; + + // Remove matching events + for ( j = 0; j < eventType.length; j++ ) { + handleObj = eventType[ j ]; + + if ( ( mappedTypes || origType === handleObj.origType ) && + ( !handler || handler.guid === handleObj.guid ) && + ( !namespaces || namespaces.test( handleObj.namespace ) ) && + ( !selector || selector === handleObj.selector || selector === "**" && handleObj.selector ) ) { + eventType.splice( j--, 1 ); + + if ( handleObj.selector ) { + eventType.delegateCount--; } - } - - continue; - } - - special = jQuery.event.special[ type ] || {}; - - for ( j = pos || 0; j < eventType.length; j++ ) { - handleObj = eventType[ j ]; - - if ( handler.guid === handleObj.guid ) { - // remove the given handler for the given type - if ( all || namespace.test( handleObj.namespace ) ) { - if ( pos == null ) { - eventType.splice( j--, 1 ); - } - - if ( special.remove ) { - special.remove.call( elem, handleObj ); - } + if ( special.remove ) { + special.remove.call( elem, handleObj ); } - - if ( pos != null ) { - break; - } - } - } - - // remove generic event handler if no more handlers exist - if ( eventType.length === 0 || pos != null && eventType.length === 1 ) { + } + } + + // Remove generic event handler if we removed something and no more handlers exist + // (avoids potential for endless recursion during removal of special event handlers) + if ( eventType.length === 0 && origCount !== eventType.length ) { if ( !special.teardown || special.teardown.call( elem, namespaces ) === false ) { jQuery.removeEvent( elem, type, elemData.handle ); } - ret = null; delete events[ type ]; } } // Remove the expando if it's no longer used if ( jQuery.isEmptyObject( events ) ) { - var handle = elemData.handle; + handle = elemData.handle; if ( handle ) { handle.elem = null; } - delete elemData.events; - delete elemData.handle; - - if ( jQuery.isEmptyObject( elemData ) ) { - jQuery.removeData( elem, undefined, true ); - } - } - }, - - // bubbling is internal - trigger: function( event, data, elem /*, bubbling */ ) { + // removeData also checks for emptiness and clears the expando if empty + // so use it instead of delete + jQuery.removeData( elem, [ "events", "handle" ], true ); + } + }, + + // Events that are safe to short-circuit if no handlers are attached. + // Native DOM events should not be added, they may have inline handlers. + customEvent: { + "getData": true, + "setData": true, + "changeData": true + }, + + trigger: function( event, data, elem, onlyHandlers ) { + // Don't do events on text and comment nodes + if ( elem && (elem.nodeType === 3 || elem.nodeType === 8) ) { + return; + } + // Event object or event type var type = event.type || event, - bubbling = arguments[3]; - - if ( !bubbling ) { - event = typeof event === "object" ? - // jQuery.Event object - event[ jQuery.expando ] ? event : - // Object literal - jQuery.extend( jQuery.Event(type), event ) : - // Just the event type (string) - jQuery.Event(type); - - if ( type.indexOf("!") >= 0 ) { - event.type = type = type.slice(0, -1); - event.exclusive = true; - } - - // Handle a global trigger - if ( !elem ) { - // Don't bubble custom events when global (to avoid too much overhead) - event.stopPropagation(); - - // Only trigger if we've ever bound an event for it - if ( jQuery.event.global[ type ] ) { - // XXX This code smells terrible. event.js should not be directly - // inspecting the data cache - jQuery.each( jQuery.cache, function() { - // internalKey variable is just used to make it easier to find - // and potentially change this stuff later; currently it just - // points to jQuery.expando - var internalKey = jQuery.expando, - internalCache = this[ internalKey ]; - if ( internalCache && internalCache.events && internalCache.events[ type ] ) { - jQuery.event.trigger( event, data, internalCache.handle.elem ); - } - }); - } - } - - // Handle triggering a single element - - // don't do events on text and comment nodes - if ( !elem || elem.nodeType === 3 || elem.nodeType === 8 ) { - return undefined; - } - - // Clean up in case it is reused - event.result = undefined; + namespaces = [], + cache, exclusive, i, cur, old, ontype, special, handle, eventPath, bubbleType; + + // focus/blur morphs to focusin/out; ensure we're not firing them right now + if ( rfocusMorph.test( type + jQuery.event.triggered ) ) { + return; + } + + if ( type.indexOf( "!" ) >= 0 ) { + // Exclusive events trigger only for the exact event (no namespaces) + type = type.slice(0, -1); + exclusive = true; + } + + if ( type.indexOf( "." ) >= 0 ) { + // Namespaced trigger; create a regexp to match event type in handle() + namespaces = type.split("."); + type = namespaces.shift(); + namespaces.sort(); + } + + if ( (!elem || jQuery.event.customEvent[ type ]) && !jQuery.event.global[ type ] ) { + // No jQuery handlers for this event type, and it can't have inline handlers + return; + } + + // Caller can pass in an Event, Object, or just an event type string + event = typeof event === "object" ? + // jQuery.Event object + event[ jQuery.expando ] ? event : + // Object literal + new jQuery.Event( type, event ) : + // Just the event type (string) + new jQuery.Event( type ); + + event.type = type; + event.isTrigger = true; + event.exclusive = exclusive; + event.namespace = namespaces.join( "." ); + event.namespace_re = event.namespace? new RegExp("(^|\\.)" + namespaces.join("\\.(?:.*\\.)?") + "(\\.|$)") : null; + ontype = type.indexOf( ":" ) < 0 ? "on" + type : ""; + + // Handle a global trigger + if ( !elem ) { + + // TODO: Stop taunting the data cache; remove global events and always attach to document + cache = jQuery.cache; + for ( i in cache ) { + if ( cache[ i ].events && cache[ i ].events[ type ] ) { + jQuery.event.trigger( event, data, cache[ i ].handle.elem, true ); + } + } + return; + } + + // Clean up the event in case it is being reused + event.result = undefined; + if ( !event.target ) { event.target = elem; - - // Clone the incoming data, if any - data = jQuery.makeArray( data ); - data.unshift( event ); - } - - event.currentTarget = elem; - - // Trigger the event, it is assumed that "handle" is a function - var handle = jQuery._data( elem, "handle" ); - - if ( handle ) { - handle.apply( elem, data ); - } - - var parent = elem.parentNode || elem.ownerDocument; - - // Trigger an inline bound script - try { - if ( !(elem && elem.nodeName && jQuery.noData[elem.nodeName.toLowerCase()]) ) { - if ( elem[ "on" + type ] && elem[ "on" + type ].apply( elem, data ) === false ) { - event.result = false; - event.preventDefault(); - } - } - - // prevent IE from throwing an error for some elements with some event types, see #3533 - } catch (inlineError) {} - - if ( !event.isPropagationStopped() && parent ) { - jQuery.event.trigger( event, data, parent, true ); - - } else if ( !event.isDefaultPrevented() ) { - var old, - target = event.target, - targetType = type.replace( rnamespaces, "" ), - isClick = jQuery.nodeName( target, "a" ) && targetType === "click", - special = jQuery.event.special[ targetType ] || {}; - - if ( (!special._default || special._default.call( elem, event ) === false) && - !isClick && !(target && target.nodeName && jQuery.noData[target.nodeName.toLowerCase()]) ) { - - try { - if ( target[ targetType ] ) { - // Make sure that we don't accidentally re-trigger the onFOO events - old = target[ "on" + targetType ]; - - if ( old ) { - target[ "on" + targetType ] = null; - } - - jQuery.event.triggered = event.type; - target[ targetType ](); + } + + // Clone any incoming data and prepend the event, creating the handler arg list + data = data != null ? jQuery.makeArray( data ) : []; + data.unshift( event ); + + // Allow special events to draw outside the lines + special = jQuery.event.special[ type ] || {}; + if ( special.trigger && special.trigger.apply( elem, data ) === false ) { + return; + } + + // Determine event propagation path in advance, per W3C events spec (#9951) + // Bubble up to document, then to window; watch for a global ownerDocument var (#9724) + eventPath = [[ elem, special.bindType || type ]]; + if ( !onlyHandlers && !special.noBubble && !jQuery.isWindow( elem ) ) { + + bubbleType = special.delegateType || type; + cur = rfocusMorph.test( bubbleType + type ) ? elem : elem.parentNode; + old = null; + for ( ; cur; cur = cur.parentNode ) { + eventPath.push([ cur, bubbleType ]); + old = cur; + } + + // Only add window if we got to document (e.g., not plain obj or detached DOM) + if ( old && old === elem.ownerDocument ) { + eventPath.push([ old.defaultView || old.parentWindow || window, bubbleType ]); + } + } + + // Fire handlers on the event path + for ( i = 0; i < eventPath.length && !event.isPropagationStopped(); i++ ) { + + cur = eventPath[i][0]; + event.type = eventPath[i][1]; + + handle = ( jQuery._data( cur, "events" ) || {} )[ event.type ] && jQuery._data( cur, "handle" ); + if ( handle ) { + handle.apply( cur, data ); + } + // Note that this is a bare JS function and not a jQuery handler + handle = ontype && cur[ ontype ]; + if ( handle && jQuery.acceptData( cur ) && handle.apply( cur, data ) === false ) { + event.preventDefault(); + } + } + event.type = type; + + // If nobody prevented the default action, do it now + if ( !onlyHandlers && !event.isDefaultPrevented() ) { + + if ( (!special._default || special._default.apply( elem.ownerDocument, data ) === false) && + !(type === "click" && jQuery.nodeName( elem, "a" )) && jQuery.acceptData( elem ) ) { + + // Call a native DOM method on the target with the same name name as the event. + // Can't use an .isFunction() check here because IE6/7 fails that test. + // Don't do default actions on window, that's where global variables be (#6170) + // IE<9 dies on focus/blur to hidden element (#1486) + if ( ontype && elem[ type ] && ((type !== "focus" && type !== "blur") || event.target.offsetWidth !== 0) && !jQuery.isWindow( elem ) ) { + + // Don't re-trigger an onFOO event when we call its FOO() method + old = elem[ ontype ]; + + if ( old ) { + elem[ ontype ] = null; } - // prevent IE from throwing an error for some elements with some event types, see #3533 - } catch (triggerError) {} - - if ( old ) { - target[ "on" + targetType ] = old; - } - - jQuery.event.triggered = undefined; - } - } - }, - - handle: function( event ) { - var all, handlers, namespaces, namespace_re, events, - namespace_sort = [], - args = jQuery.makeArray( arguments ); - - event = args[0] = jQuery.event.fix( event || window.event ); - event.currentTarget = this; - - // Namespaced event handlers - all = event.type.indexOf(".") < 0 && !event.exclusive; - - if ( !all ) { - namespaces = event.type.split("."); - event.type = namespaces.shift(); - namespace_sort = namespaces.slice(0).sort(); - namespace_re = new RegExp("(^|\\.)" + namespace_sort.join("\\.(?:.*\\.)?") + "(\\.|$)"); - } - - event.namespace = event.namespace || namespace_sort.join("."); - - events = jQuery._data(this, "events"); - - handlers = (events || {})[ event.type ]; - - if ( events && handlers ) { - // Clone the handlers to prevent manipulation - handlers = handlers.slice(0); - - for ( var j = 0, l = handlers.length; j < l; j++ ) { - var handleObj = handlers[ j ]; - - // Filter the functions by class - if ( all || namespace_re.test( handleObj.namespace ) ) { - // Pass in a reference to the handler function itself - // So that we can later remove it - event.handler = handleObj.handler; + // Prevent re-triggering of the same event, since we already bubbled it above + jQuery.event.triggered = type; + elem[ type ](); + jQuery.event.triggered = undefined; + + if ( old ) { + elem[ ontype ] = old; + } + } + } + } + + return event.result; + }, + + dispatch: function( event ) { + + // Make a writable jQuery.Event from the native event object + event = jQuery.event.fix( event || window.event ); + + var handlers = ( (jQuery._data( this, "events" ) || {} )[ event.type ] || []), + delegateCount = handlers.delegateCount, + args = [].slice.call( arguments, 0 ), + run_all = !event.exclusive && !event.namespace, + handlerQueue = [], + i, j, cur, jqcur, ret, selMatch, matched, matches, handleObj, sel, related; + + // Use the fix-ed jQuery.Event rather than the (read-only) native event + args[0] = event; + event.delegateTarget = this; + + // Determine handlers that should run if there are delegated events + // Avoid disabled elements in IE (#6911) and non-left-click bubbling in Firefox (#3861) + if ( delegateCount && !event.target.disabled && !(event.button && event.type === "click") ) { + + // Pregenerate a single jQuery object for reuse with .is() + jqcur = jQuery(this); + jqcur.context = this.ownerDocument || this; + + for ( cur = event.target; cur != this; cur = cur.parentNode || this ) { + selMatch = {}; + matches = []; + jqcur[0] = cur; + for ( i = 0; i < delegateCount; i++ ) { + handleObj = handlers[ i ]; + sel = handleObj.selector; + + if ( selMatch[ sel ] === undefined ) { + selMatch[ sel ] = ( + handleObj.quick ? quickIs( cur, handleObj.quick ) : jqcur.is( sel ) + ); + } + if ( selMatch[ sel ] ) { + matches.push( handleObj ); + } + } + if ( matches.length ) { + handlerQueue.push({ elem: cur, matches: matches }); + } + } + } + + // Add the remaining (directly-bound) handlers + if ( handlers.length > delegateCount ) { + handlerQueue.push({ elem: this, matches: handlers.slice( delegateCount ) }); + } + + // Run delegates first; they may want to stop propagation beneath us + for ( i = 0; i < handlerQueue.length && !event.isPropagationStopped(); i++ ) { + matched = handlerQueue[ i ]; + event.currentTarget = matched.elem; + + for ( j = 0; j < matched.matches.length && !event.isImmediatePropagationStopped(); j++ ) { + handleObj = matched.matches[ j ]; + + // Triggered event must either 1) be non-exclusive and have no namespace, or + // 2) have namespace(s) a subset or equal to those in the bound event (both can have no namespace). + if ( run_all || (!event.namespace && !handleObj.namespace) || event.namespace_re && event.namespace_re.test( handleObj.namespace ) ) { + event.data = handleObj.data; event.handleObj = handleObj; - var ret = handleObj.handler.apply( this, args ); + ret = ( (jQuery.event.special[ handleObj.origType ] || {}).handle || handleObj.handler ) + .apply( matched.elem, args ); if ( ret !== undefined ) { event.result = ret; @@ -2574,10 +3262,6 @@ event.stopPropagation(); } } - - if ( event.isImmediatePropagationStopped() ) { - break; - } } } } @@ -2585,90 +3269,109 @@ return event.result; }, - props: "altKey attrChange attrName bubbles button cancelable charCode clientX clientY ctrlKey currentTarget data detail eventPhase fromElement handler keyCode layerX layerY metaKey newValue offsetX offsetY pageX pageY prevValue relatedNode relatedTarget screenX screenY shiftKey srcElement target toElement view wheelDelta which".split(" "), + // Includes some event props shared by KeyEvent and MouseEvent + // *** attrChange attrName relatedNode srcElement are not normalized, non-W3C, deprecated, will be removed in 1.8 *** + props: "attrChange attrName relatedNode srcElement altKey bubbles cancelable ctrlKey currentTarget eventPhase metaKey relatedTarget shiftKey target timeStamp view which".split(" "), + + fixHooks: {}, + + keyHooks: { + props: "char charCode key keyCode".split(" "), + filter: function( event, original ) { + + // Add which for key events + if ( event.which == null ) { + event.which = original.charCode != null ? original.charCode : original.keyCode; + } + + return event; + } + }, + + mouseHooks: { + props: "button buttons clientX clientY fromElement offsetX offsetY pageX pageY screenX screenY toElement".split(" "), + filter: function( event, original ) { + var eventDoc, doc, body, + button = original.button, + fromElement = original.fromElement; + + // Calculate pageX/Y if missing and clientX/Y available + if ( event.pageX == null && original.clientX != null ) { + eventDoc = event.target.ownerDocument || document; + doc = eventDoc.documentElement; + body = eventDoc.body; + + event.pageX = original.clientX + ( doc && doc.scrollLeft || body && body.scrollLeft || 0 ) - ( doc && doc.clientLeft || body && body.clientLeft || 0 ); + event.pageY = original.clientY + ( doc && doc.scrollTop || body && body.scrollTop || 0 ) - ( doc && doc.clientTop || body && body.clientTop || 0 ); + } + + // Add relatedTarget, if necessary + if ( !event.relatedTarget && fromElement ) { + event.relatedTarget = fromElement === event.target ? original.toElement : fromElement; + } + + // Add which for click: 1 === left; 2 === middle; 3 === right + // Note: button is not normalized, so don't use it + if ( !event.which && button !== undefined ) { + event.which = ( button & 1 ? 1 : ( button & 2 ? 3 : ( button & 4 ? 2 : 0 ) ) ); + } + + return event; + } + }, fix: function( event ) { if ( event[ jQuery.expando ] ) { return event; } - // store a copy of the original event object - // and "clone" to set read-only properties - var originalEvent = event; + // Create a writable copy of the event object and normalize some properties + var i, prop, + originalEvent = event, + fixHook = jQuery.event.fixHooks[ event.type ] || {}, + copy = fixHook.props ? this.props.concat( fixHook.props ) : this.props; + event = jQuery.Event( originalEvent ); - for ( var i = this.props.length, prop; i; ) { - prop = this.props[ --i ]; + for ( i = copy.length; i; ) { + prop = copy[ --i ]; event[ prop ] = originalEvent[ prop ]; } - // Fix target property, if necessary + // Fix target property, if necessary (#1925, IE 6/7/8 & Safari2) if ( !event.target ) { - // Fixes #1925 where srcElement might not be defined either - event.target = event.srcElement || document; - } - - // check if target is a textnode (safari) + event.target = originalEvent.srcElement || document; + } + + // Target should not be a text node (#504, Safari) if ( event.target.nodeType === 3 ) { event.target = event.target.parentNode; } - // Add relatedTarget, if necessary - if ( !event.relatedTarget && event.fromElement ) { - event.relatedTarget = event.fromElement === event.target ? event.toElement : event.fromElement; - } - - // Calculate pageX/Y if missing and clientX/Y available - if ( event.pageX == null && event.clientX != null ) { - var doc = document.documentElement, - body = document.body; - - event.pageX = event.clientX + (doc && doc.scrollLeft || body && body.scrollLeft || 0) - (doc && doc.clientLeft || body && body.clientLeft || 0); - event.pageY = event.clientY + (doc && doc.scrollTop || body && body.scrollTop || 0) - (doc && doc.clientTop || body && body.clientTop || 0); - } - - // Add which for key events - if ( event.which == null && (event.charCode != null || event.keyCode != null) ) { - event.which = event.charCode != null ? event.charCode : event.keyCode; - } - - // Add metaKey to non-Mac browsers (use ctrl for PC's and Meta for Macs) - if ( !event.metaKey && event.ctrlKey ) { + // For mouse/key events; add metaKey if it's not there (#3368, IE6/7/8) + if ( event.metaKey === undefined ) { event.metaKey = event.ctrlKey; } - // Add which for click: 1 === left; 2 === middle; 3 === right - // Note: button is not normalized, so don't use it - if ( !event.which && event.button !== undefined ) { - event.which = (event.button & 1 ? 1 : ( event.button & 2 ? 3 : ( event.button & 4 ? 2 : 0 ) )); - } - - return event; - }, - - // Deprecated, use jQuery.guid instead - guid: 1E8, - - // Deprecated, use jQuery.proxy instead - proxy: jQuery.proxy, + return fixHook.filter? fixHook.filter( event, originalEvent ) : event; + }, special: { ready: { // Make sure the ready event is setup - setup: jQuery.bindReady, - teardown: jQuery.noop + setup: jQuery.bindReady }, - live: { - add: function( handleObj ) { - jQuery.event.add( this, - liveConvert( handleObj.origType, handleObj.selector ), - jQuery.extend({}, handleObj, {handler: liveHandler, guid: handleObj.handler.guid}) ); - }, - - remove: function( handleObj ) { - jQuery.event.remove( this, liveConvert( handleObj.origType, handleObj.selector ), handleObj ); - } + load: { + // Prevent triggered image.load events from bubbling to window.load + noBubble: true + }, + + focus: { + delegateType: "focusin" + }, + blur: { + delegateType: "focusout" }, beforeunload: { @@ -2685,9 +3388,35 @@ } } } + }, + + simulate: function( type, elem, event, bubble ) { + // Piggyback on a donor event to simulate a different one. + // Fake originalEvent to avoid donor's stopPropagation, but if the + // simulated event prevents default then we do the same on the donor. + var e = jQuery.extend( + new jQuery.Event(), + event, + { type: type, + isSimulated: true, + originalEvent: {} + } + ); + if ( bubble ) { + jQuery.event.trigger( e, null, elem ); + } else { + jQuery.event.dispatch.call( elem, e ); + } + if ( e.isDefaultPrevented() ) { + event.preventDefault(); + } } }; +// Some plugins are using, but it's undocumented/deprecated and will be removed. +// The 1.7 special event interface should provide all the hooks needed now. +jQuery.event.handle = jQuery.event.dispatch; + jQuery.removeEvent = document.removeEventListener ? function( elem, type, handle ) { if ( elem.removeEventListener ) { @@ -2700,10 +3429,10 @@ } }; -jQuery.Event = function( src ) { +jQuery.Event = function( src, props ) { // Allow instantiation without the 'new' keyword - if ( !this.preventDefault ) { - return new jQuery.Event( src ); + if ( !(this instanceof jQuery.Event) ) { + return new jQuery.Event( src, props ); } // Event object @@ -2713,17 +3442,21 @@ // Events bubbling up the document may have been marked as prevented // by a handler lower down the tree; reflect the correct value. - this.isDefaultPrevented = (src.defaultPrevented || src.returnValue === false || - src.getPreventDefault && src.getPreventDefault()) ? returnTrue : returnFalse; + this.isDefaultPrevented = ( src.defaultPrevented || src.returnValue === false || + src.getPreventDefault && src.getPreventDefault() ) ? returnTrue : returnFalse; // Event type } else { this.type = src; } - // timeStamp is buggy for some events on Firefox(#3843) - // So we won't rely on the native value - this.timeStamp = jQuery.now(); + // Put explicitly provided properties onto the event object + if ( props ) { + jQuery.extend( this, props ); + } + + // Create a timestamp if incoming event doesn't have one + this.timeStamp = src && src.timeStamp || jQuery.now(); // Mark it as fixed this[ jQuery.expando ] = true; @@ -2779,229 +3512,142 @@ isImmediatePropagationStopped: returnFalse }; -// Checks if an event happened on an element within another element -// Used in jQuery.event.special.mouseenter and mouseleave handlers -var withinElement = function( event ) { - // Check if mouse(over|out) are still within the same parent element - var parent = event.relatedTarget; - - // Firefox sometimes assigns relatedTarget a XUL element - // which we cannot access the parentNode property of - try { - - // Chrome does something similar, the parentNode property - // can be accessed but is null. - if ( parent && parent !== document && !parent.parentNode ) { - return; - } - // Traverse up the tree - while ( parent && parent !== this ) { - parent = parent.parentNode; - } - - if ( parent !== this ) { - // set the correct event type - event.type = event.data; - - // handle event if we actually just moused on to a non sub-element - jQuery.event.handle.apply( this, arguments ); - } - - // assuming we've left the element since we most likely mousedover a xul element - } catch(e) { } -}, - -// In case of event delegation, we only need to rename the event.type, -// liveHandler will take care of the rest. -delegate = function( event ) { - event.type = event.data; - jQuery.event.handle.apply( this, arguments ); -}; - -// Create mouseenter and mouseleave events +// Create mouseenter/leave events using mouseover/out and event-time checks jQuery.each({ mouseenter: "mouseover", mouseleave: "mouseout" }, function( orig, fix ) { jQuery.event.special[ orig ] = { - setup: function( data ) { - jQuery.event.add( this, fix, data && data.selector ? delegate : withinElement, orig ); - }, - teardown: function( data ) { - jQuery.event.remove( this, fix, data && data.selector ? delegate : withinElement ); + delegateType: fix, + bindType: fix, + + handle: function( event ) { + var target = this, + related = event.relatedTarget, + handleObj = event.handleObj, + selector = handleObj.selector, + ret; + + // For mousenter/leave call the handler if related is outside the target. + // NB: No relatedTarget if the mouse left/entered the browser window + if ( !related || (related !== target && !jQuery.contains( target, related )) ) { + event.type = handleObj.origType; + ret = handleObj.handler.apply( this, arguments ); + event.type = fix; + } + return ret; } }; }); -// submit delegation +// IE submit delegation if ( !jQuery.support.submitBubbles ) { jQuery.event.special.submit = { - setup: function( data, namespaces ) { - if ( this.nodeName && this.nodeName.toLowerCase() !== "form" ) { - jQuery.event.add(this, "click.specialSubmit", function( e ) { - var elem = e.target, - type = elem.type; - - if ( (type === "submit" || type === "image") && jQuery( elem ).closest("form").length ) { - trigger( "submit", this, arguments ); - } - }); - - jQuery.event.add(this, "keypress.specialSubmit", function( e ) { - var elem = e.target, - type = elem.type; - - if ( (type === "text" || type === "password") && jQuery( elem ).closest("form").length && e.keyCode === 13 ) { - trigger( "submit", this, arguments ); - } - }); - - } else { + setup: function() { + // Only need this for delegated form submit events + if ( jQuery.nodeName( this, "form" ) ) { return false; } + + // Lazy-add a submit handler when a descendant form may potentially be submitted + jQuery.event.add( this, "click._submit keypress._submit", function( e ) { + // Node name check avoids a VML-related crash in IE (#9807) + var elem = e.target, + form = jQuery.nodeName( elem, "input" ) || jQuery.nodeName( elem, "button" ) ? elem.form : undefined; + if ( form && !form._submit_attached ) { + jQuery.event.add( form, "submit._submit", function( event ) { + // If form was submitted by the user, bubble the event up the tree + if ( this.parentNode && !event.isTrigger ) { + jQuery.event.simulate( "submit", this.parentNode, event, true ); + } + }); + form._submit_attached = true; + } + }); + // return undefined since we don't need an event listener }, - teardown: function( namespaces ) { - jQuery.event.remove( this, ".specialSubmit" ); + teardown: function() { + // Only need this for delegated form submit events + if ( jQuery.nodeName( this, "form" ) ) { + return false; + } + + // Remove delegated handlers; cleanData eventually reaps submit handlers attached above + jQuery.event.remove( this, "._submit" ); } }; - } -// change delegation, happens here so we have bind. +// IE change delegation and checkbox/radio fix if ( !jQuery.support.changeBubbles ) { - var changeFilters, - - getVal = function( elem ) { - var type = elem.type, val = elem.value; - - if ( type === "radio" || type === "checkbox" ) { - val = elem.checked; - - } else if ( type === "select-multiple" ) { - val = elem.selectedIndex > -1 ? - jQuery.map( elem.options, function( elem ) { - return elem.selected; - }).join("-") : - ""; - - } else if ( elem.nodeName.toLowerCase() === "select" ) { - val = elem.selectedIndex; - } - - return val; - }, - - testChange = function testChange( e ) { - var elem = e.target, data, val; - - if ( !rformElems.test( elem.nodeName ) || elem.readOnly ) { - return; - } - - data = jQuery._data( elem, "_change_data" ); - val = getVal(elem); - - // the current data will be also retrieved by beforeactivate - if ( e.type !== "focusout" || elem.type !== "radio" ) { - jQuery._data( elem, "_change_data", val ); - } - - if ( data === undefined || val === data ) { - return; - } - - if ( data != null || val ) { - e.type = "change"; - e.liveFired = undefined; - jQuery.event.trigger( e, arguments[1], elem ); + jQuery.event.special.change = { + + setup: function() { + + if ( rformElems.test( this.nodeName ) ) { + // IE doesn't fire change on a check/radio until blur; trigger it on click + // after a propertychange. Eat the blur-change in special.change.handle. + // This still fires onchange a second time for check/radio after blur. + if ( this.type === "checkbox" || this.type === "radio" ) { + jQuery.event.add( this, "propertychange._change", function( event ) { + if ( event.originalEvent.propertyName === "checked" ) { + this._just_changed = true; + } + }); + jQuery.event.add( this, "click._change", function( event ) { + if ( this._just_changed && !event.isTrigger ) { + this._just_changed = false; + jQuery.event.simulate( "change", this, event, true ); + } + }); + } + return false; + } + // Delegated event; lazy-add a change handler on descendant inputs + jQuery.event.add( this, "beforeactivate._change", function( e ) { + var elem = e.target; + + if ( rformElems.test( elem.nodeName ) && !elem._change_attached ) { + jQuery.event.add( elem, "change._change", function( event ) { + if ( this.parentNode && !event.isSimulated && !event.isTrigger ) { + jQuery.event.simulate( "change", this.parentNode, event, true ); + } + }); + elem._change_attached = true; + } + }); + }, + + handle: function( event ) { + var elem = event.target; + + // Swallow native change events from checkbox/radio, we already triggered them above + if ( this !== elem || event.isSimulated || event.isTrigger || (elem.type !== "radio" && elem.type !== "checkbox") ) { + return event.handleObj.handler.apply( this, arguments ); + } + }, + + teardown: function() { + jQuery.event.remove( this, "._change" ); + + return rformElems.test( this.nodeName ); } }; - - jQuery.event.special.change = { - filters: { - focusout: testChange, - - beforedeactivate: testChange, - - click: function( e ) { - var elem = e.target, type = elem.type; - - if ( type === "radio" || type === "checkbox" || elem.nodeName.toLowerCase() === "select" ) { - testChange.call( this, e ); - } - }, - - // Change has to be called before submit - // Keydown will be called before keypress, which is used in submit-event delegation - keydown: function( e ) { - var elem = e.target, type = elem.type; - - if ( (e.keyCode === 13 && elem.nodeName.toLowerCase() !== "textarea") || - (e.keyCode === 32 && (type === "checkbox" || type === "radio")) || - type === "select-multiple" ) { - testChange.call( this, e ); - } - }, - - // Beforeactivate happens also before the previous element is blurred - // with this event you can't trigger a change event, but you can store - // information - beforeactivate: function( e ) { - var elem = e.target; - jQuery._data( elem, "_change_data", getVal(elem) ); - } - }, - - setup: function( data, namespaces ) { - if ( this.type === "file" ) { - return false; - } - - for ( var type in changeFilters ) { - jQuery.event.add( this, type + ".specialChange", changeFilters[type] ); - } - - return rformElems.test( this.nodeName ); - }, - - teardown: function( namespaces ) { - jQuery.event.remove( this, ".specialChange" ); - - return rformElems.test( this.nodeName ); - } - }; - - changeFilters = jQuery.event.special.change.filters; - - // Handle when the input is .focus()'d - changeFilters.focus = changeFilters.beforeactivate; } -function trigger( type, elem, args ) { - // Piggyback on a donor event to simulate a different one. - // Fake originalEvent to avoid donor's stopPropagation, but if the - // simulated event prevents default then we do the same on the donor. - // Don't pass args or remember liveFired; they apply to the donor event. - var event = jQuery.extend( {}, args[ 0 ] ); - event.type = type; - event.originalEvent = {}; - event.liveFired = undefined; - jQuery.event.handle.call( elem, event ); - if ( event.isDefaultPrevented() ) { - args[ 0 ].preventDefault(); - } -} - // Create "bubbling" focus and blur events -if ( document.addEventListener ) { +if ( !jQuery.support.focusinBubbles ) { jQuery.each({ focus: "focusin", blur: "focusout" }, function( orig, fix ) { - + // Attach a single capturing handler while someone wants focusin/focusout - var attaches = 0; - + var attaches = 0, + handler = function( event ) { + jQuery.event.simulate( fix, event.target, jQuery.event.fix( event ), true ); + }; + jQuery.event.special[ fix ] = { setup: function() { if ( attaches++ === 0 ) { @@ -3014,82 +3660,120 @@ } } }; - - function handler( donor ) { - // Donor event is always a native one; fix it and switch its type. - // Let focusin/out handler cancel the donor focus/blur event. - var e = jQuery.event.fix( donor ); - e.type = fix; - e.originalEvent = {}; - jQuery.event.trigger( e, null, e.target ); - if ( e.isDefaultPrevented() ) { - donor.preventDefault(); - } - } }); } -jQuery.each(["bind", "one"], function( i, name ) { - jQuery.fn[ name ] = function( type, data, fn ) { - // Handle object literals - if ( typeof type === "object" ) { - for ( var key in type ) { - this[ name ](key, data, type[key], fn); +jQuery.fn.extend({ + + on: function( types, selector, data, fn, /*INTERNAL*/ one ) { + var origFn, type; + + // Types can be a map of types/handlers + if ( typeof types === "object" ) { + // ( types-Object, selector, data ) + if ( typeof selector !== "string" ) { + // ( types-Object, data ) + data = selector; + selector = undefined; + } + for ( type in types ) { + this.on( type, selector, data, types[ type ], one ); } return this; } - if ( jQuery.isFunction( data ) || data === false ) { - fn = data; - data = undefined; - } - - var handler = name === "one" ? jQuery.proxy( fn, function( event ) { - jQuery( this ).unbind( event, handler ); - return fn.apply( this, arguments ); - }) : fn; - - if ( type === "unload" && name !== "one" ) { - this.one( type, data, fn ); - - } else { - for ( var i = 0, l = this.length; i < l; i++ ) { - jQuery.event.add( this[i], type, handler, data ); - } - } - + if ( data == null && fn == null ) { + // ( types, fn ) + fn = selector; + data = selector = undefined; + } else if ( fn == null ) { + if ( typeof selector === "string" ) { + // ( types, selector, fn ) + fn = data; + data = undefined; + } else { + // ( types, data, fn ) + fn = data; + data = selector; + selector = undefined; + } + } + if ( fn === false ) { + fn = returnFalse; + } else if ( !fn ) { + return this; + } + + if ( one === 1 ) { + origFn = fn; + fn = function( event ) { + // Can use an empty set, since event contains the info + jQuery().off( event ); + return origFn.apply( this, arguments ); + }; + // Use same guid so caller can remove using origFn + fn.guid = origFn.guid || ( origFn.guid = jQuery.guid++ ); + } + return this.each( function() { + jQuery.event.add( this, types, fn, data, selector ); + }); + }, + one: function( types, selector, data, fn ) { + return this.on.call( this, types, selector, data, fn, 1 ); + }, + off: function( types, selector, fn ) { + if ( types && types.preventDefault && types.handleObj ) { + // ( event ) dispatched jQuery.Event + var handleObj = types.handleObj; + jQuery( types.delegateTarget ).off( + handleObj.namespace? handleObj.type + "." + handleObj.namespace : handleObj.type, + handleObj.selector, + handleObj.handler + ); + return this; + } + if ( typeof types === "object" ) { + // ( types-object [, selector] ) + for ( var type in types ) { + this.off( type, selector, types[ type ] ); + } + return this; + } + if ( selector === false || typeof selector === "function" ) { + // ( types [, fn] ) + fn = selector; + selector = undefined; + } + if ( fn === false ) { + fn = returnFalse; + } + return this.each(function() { + jQuery.event.remove( this, types, fn, selector ); + }); + }, + + bind: function( types, data, fn ) { + return this.on( types, null, data, fn ); + }, + unbind: function( types, fn ) { + return this.off( types, null, fn ); + }, + + live: function( types, data, fn ) { + jQuery( this.context ).on( types, this.selector, data, fn ); return this; - }; -}); - -jQuery.fn.extend({ - unbind: function( type, fn ) { - // Handle object literals - if ( typeof type === "object" && !type.preventDefault ) { - for ( var key in type ) { - this.unbind(key, type[key]); - } - - } else { - for ( var i = 0, l = this.length; i < l; i++ ) { - jQuery.event.remove( this[i], type, fn ); - } - } - + }, + die: function( types, fn ) { + jQuery( this.context ).off( types, this.selector || "**", fn ); return this; }, delegate: function( selector, types, data, fn ) { - return this.live( types, data, fn, selector ); - }, - + return this.on( types, selector, data, fn ); + }, undelegate: function( selector, types, fn ) { - if ( arguments.length === 0 ) { - return this.unbind( "live" ); - - } else { - return this.die( types, null, fn, selector ); - } + // ( namespace ) or ( selector, types [, fn] ) + return arguments.length == 1? this.off( selector, "**" ) : this.off( types, selector, fn ); }, trigger: function( type, data ) { @@ -3097,38 +3781,36 @@ jQuery.event.trigger( type, data, this ); }); }, - triggerHandler: function( type, data ) { if ( this[0] ) { - var event = jQuery.Event( type ); - event.preventDefault(); - event.stopPropagation(); - jQuery.event.trigger( event, data, this[0] ); - return event.result; + return jQuery.event.trigger( type, data, this[0], true ); } }, toggle: function( fn ) { // Save reference to arguments for access in closure var args = arguments, - i = 1; + guid = fn.guid || jQuery.guid++, + i = 0, + toggler = function( event ) { + // Figure out which function to execute + var lastToggle = ( jQuery._data( this, "lastToggle" + fn.guid ) || 0 ) % i; + jQuery._data( this, "lastToggle" + fn.guid, lastToggle + 1 ); + + // Make sure that clicks stop + event.preventDefault(); + + // and execute the function + return args[ lastToggle ].apply( this, arguments ) || false; + }; // link all the functions, so any of them can unbind this click handler + toggler.guid = guid; while ( i < args.length ) { - jQuery.proxy( fn, args[ i++ ] ); - } - - return this.click( jQuery.proxy( fn, function( event ) { - // Figure out which function to execute - var lastToggle = ( jQuery._data( this, "lastToggle" + fn.guid ) || 0 ) % i; - jQuery._data( this, "lastToggle" + fn.guid, lastToggle + 1 ); - - // Make sure that clicks stop - event.preventDefault(); - - // and execute the function - return args[ lastToggle ].apply( this, arguments ) || false; - })); + args[ i++ ].guid = guid; + } + + return this.click( toggler ); }, hover: function( fnOver, fnOut ) { @@ -3136,165 +3818,9 @@ } }); -var liveMap = { - focus: "focusin", - blur: "focusout", - mouseenter: "mouseover", - mouseleave: "mouseout" -}; - -jQuery.each(["live", "die"], function( i, name ) { - jQuery.fn[ name ] = function( types, data, fn, origSelector /* Internal Use Only */ ) { - var type, i = 0, match, namespaces, preType, - selector = origSelector || this.selector, - context = origSelector ? this : jQuery( this.context ); - - if ( typeof types === "object" && !types.preventDefault ) { - for ( var key in types ) { - context[ name ]( key, data, types[key], selector ); - } - - return this; - } - - if ( jQuery.isFunction( data ) ) { - fn = data; - data = undefined; - } - - types = (types || "").split(" "); - - while ( (type = types[ i++ ]) != null ) { - match = rnamespaces.exec( type ); - namespaces = ""; - - if ( match ) { - namespaces = match[0]; - type = type.replace( rnamespaces, "" ); - } - - if ( type === "hover" ) { - types.push( "mouseenter" + namespaces, "mouseleave" + namespaces ); - continue; - } - - preType = type; - - if ( type === "focus" || type === "blur" ) { - types.push( liveMap[ type ] + namespaces ); - type = type + namespaces; - - } else { - type = (liveMap[ type ] || type) + namespaces; - } - - if ( name === "live" ) { - // bind live handler - for ( var j = 0, l = context.length; j < l; j++ ) { - jQuery.event.add( context[j], "live." + liveConvert( type, selector ), - { data: data, selector: selector, handler: fn, origType: type, origHandler: fn, preType: preType } ); - } - - } else { - // unbind live handler - context.unbind( "live." + liveConvert( type, selector ), fn ); - } - } - - return this; - }; -}); - -function liveHandler( event ) { - var stop, maxLevel, related, match, handleObj, elem, j, i, l, data, close, namespace, ret, - elems = [], - selectors = [], - events = jQuery._data( this, "events" ); - - // Make sure we avoid non-left-click bubbling in Firefox (#3861) and disabled elements in IE (#6911) - if ( event.liveFired === this || !events || !events.live || event.target.disabled || event.button && event.type === "click" ) { - return; - } - - if ( event.namespace ) { - namespace = new RegExp("(^|\\.)" + event.namespace.split(".").join("\\.(?:.*\\.)?") + "(\\.|$)"); - } - - event.liveFired = this; - - var live = events.live.slice(0); - - for ( j = 0; j < live.length; j++ ) { - handleObj = live[j]; - - if ( handleObj.origType.replace( rnamespaces, "" ) === event.type ) { - selectors.push( handleObj.selector ); - - } else { - live.splice( j--, 1 ); - } - } - - match = jQuery( event.target ).closest( selectors, event.currentTarget ); - - for ( i = 0, l = match.length; i < l; i++ ) { - close = match[i]; - - for ( j = 0; j < live.length; j++ ) { - handleObj = live[j]; - - if ( close.selector === handleObj.selector && (!namespace || namespace.test( handleObj.namespace )) && !close.elem.disabled ) { - elem = close.elem; - related = null; - - // Those two events require additional checking - if ( handleObj.preType === "mouseenter" || handleObj.preType === "mouseleave" ) { - event.type = handleObj.preType; - related = jQuery( event.relatedTarget ).closest( handleObj.selector )[0]; - } - - if ( !related || related !== elem ) { - elems.push({ elem: elem, handleObj: handleObj, level: close.level }); - } - } - } - } - - for ( i = 0, l = elems.length; i < l; i++ ) { - match = elems[i]; - - if ( maxLevel && match.level > maxLevel ) { - break; - } - - event.currentTarget = match.elem; - event.data = match.handleObj.data; - event.handleObj = match.handleObj; - - ret = match.handleObj.origHandler.apply( match.elem, arguments ); - - if ( ret === false || event.isPropagationStopped() ) { - maxLevel = match.level; - - if ( ret === false ) { - stop = false; - } - if ( event.isImmediatePropagationStopped() ) { - break; - } - } - } - - return stop; -} - -function liveConvert( type, selector ) { - return (type && type !== "*" ? type + "." : "") + selector.replace(rperiod, "`").replace(rspace, "&"); -} - jQuery.each( ("blur focus focusin focusout load resize scroll unload click dblclick " + "mousedown mouseup mousemove mouseover mouseout mouseenter mouseleave " + - "change select submit keydown keypress keyup error").split(" "), function( i, name ) { + "change select submit keydown keypress keyup error contextmenu").split(" "), function( i, name ) { // Handle event binding jQuery.fn[ name ] = function( data, fn ) { @@ -3304,16 +3830,25 @@ } return arguments.length > 0 ? - this.bind( name, data, fn ) : + this.on( name, null, data, fn ) : this.trigger( name ); }; if ( jQuery.attrFn ) { jQuery.attrFn[ name ] = true; } + + if ( rkeyEvent.test( name ) ) { + jQuery.event.fixHooks[ name ] = jQuery.event.keyHooks; + } + + if ( rmouseEvent.test( name ) ) { + jQuery.event.fixHooks[ name ] = jQuery.event.mouseHooks; + } }); + /*! * Sizzle CSS Selector Engine * Copyright 2011, The Dojo Foundation @@ -3323,11 +3858,13 @@ (function(){ var chunker = /((?:$(?:\([^()]+$|[^()]+)+\)|\[(?:\[[^\[\]]*\]|['"][^'"]*['"]|[^\[\]'"]+)+\]|\\.|[^ >+~,(\[\\]+)+|[>+~])(\s*,\s*)?((?:.|\r|\n)*)/g, + expando = "sizcache" + (Math.random() + '').replace('.', ''), done = 0, toString = Object.prototype.toString, hasDuplicate = false, baseHasDuplicate = true, rBackslash = /\\/g, + rReturn = /\r\n/g, rNonWord = /\W/; // Here we check if the JavaScript engine is using some sort of @@ -3379,7 +3916,7 @@ if ( parts.length > 1 && origPOS.exec( selector ) ) { if ( parts.length === 2 && Expr.relative[ parts[0] ] ) { - set = posProcess( parts[0] + parts[1], context ); + set = posProcess( parts[0] + parts[1], context, seed ); } else { set = Expr.relative[ parts[0] ] ? @@ -3393,7 +3930,7 @@ selector += parts.shift(); } - set = posProcess( selector, set ); + set = posProcess( selector, set, seed ); } } @@ -3512,18 +4049,17 @@ }; Sizzle.find = function( expr, context, isXML ) { - var set; + var set, i, len, match, type, left; if ( !expr ) { return []; } - for ( var i = 0, l = Expr.order.length; i < l; i++ ) { - var match, - type = Expr.order[i]; + for ( i = 0, len = Expr.order.length; i < len; i++ ) { + type = Expr.order[i]; if ( (match = Expr.leftMatch[ type ].exec( expr )) ) { - var left = match[1]; + left = match[1]; match.splice( 1, 1 ); if ( left.substr( left.length - 1 ) !== "\\" ) { @@ -3549,17 +4085,18 @@ Sizzle.filter = function( expr, set, inplace, not ) { var match, anyFound, + type, found, item, filter, left, + i, pass, old = expr, result = [], curLoop = set, isXMLFilter = set && set[0] && Sizzle.isXML( set[0] ); while ( expr && set.length ) { - for ( var type in Expr.filter ) { + for ( type in Expr.filter ) { if ( (match = Expr.leftMatch[ type ].exec( expr )) != null && match[2] ) { - var found, item, - filter = Expr.filter[ type ], - left = match[1]; + filter = Expr.filter[ type ]; + left = match[1]; anyFound = false; @@ -3585,10 +4122,10 @@ } if ( match ) { - for ( var i = 0; (item = curLoop[i]) != null; i++ ) { + for ( i = 0; (item = curLoop[i]) != null; i++ ) { if ( item ) { found = filter( item, match, i, curLoop ); - var pass = not ^ !!found; + pass = not ^ found; if ( inplace && found != null ) { if ( pass ) { @@ -3639,7 +4176,46 @@ }; Sizzle.error = function( msg ) { - throw "Syntax error, unrecognized expression: " + msg; + throw new Error( "Syntax error, unrecognized expression: " + msg ); +}; + +/** + * Utility function for retreiving the text value of an array of DOM nodes + * @param {Array|Element} elem + */ +var getText = Sizzle.getText = function( elem ) { + var i, node, + nodeType = elem.nodeType, + ret = ""; + + if ( nodeType ) { + if ( nodeType === 1 || nodeType === 9 ) { + // Use textContent || innerText for elements + if ( typeof elem.textContent === 'string' ) { + return elem.textContent; + } else if ( typeof elem.innerText === 'string' ) { + // Replace IE's carriage returns + return elem.innerText.replace( rReturn, '' ); + } else { + // Traverse it's children + for ( elem = elem.firstChild; elem; elem = elem.nextSibling) { + ret += getText( elem ); + } + } + } else if ( nodeType === 3 || nodeType === 4 ) { + return elem.nodeValue; + } + } else { + + // If no nodeType, this is expected to be an array + for ( i = 0; (node = elem[i]); i++ ) { + // Do not traverse comment nodes + if ( node.nodeType !== 8 ) { + ret += getText( node ); + } + } + } + return ret; }; var Expr = Sizzle.selectors = { @@ -3941,42 +4517,50 @@ var attr = elem.getAttribute( "type" ), type = elem.type; // IE6 and 7 will map elem.type to 'text' for new HTML5 types (search, etc) // use getAttribute instead to test this case - return "text" === type && ( attr === type || attr === null ); + return elem.nodeName.toLowerCase() === "input" && "text" === type && ( attr === type || attr === null ); }, radio: function( elem ) { - return "radio" === elem.type; + return elem.nodeName.toLowerCase() === "input" && "radio" === elem.type; }, checkbox: function( elem ) { - return "checkbox" === elem.type; + return elem.nodeName.toLowerCase() === "input" && "checkbox" === elem.type; }, file: function( elem ) { - return "file" === elem.type; + return elem.nodeName.toLowerCase() === "input" && "file" === elem.type; }, + password: function( elem ) { - return "password" === elem.type; + return elem.nodeName.toLowerCase() === "input" && "password" === elem.type; }, submit: function( elem ) { - return "submit" === elem.type; + var name = elem.nodeName.toLowerCase(); + return (name === "input" || name === "button") && "submit" === elem.type; }, image: function( elem ) { - return "image" === elem.type; + return elem.nodeName.toLowerCase() === "input" && "image" === elem.type; }, reset: function( elem ) { - return "reset" === elem.type; + var name = elem.nodeName.toLowerCase(); + return (name === "input" || name === "button") && "reset" === elem.type; }, button: function( elem ) { - return "button" === elem.type || elem.nodeName.toLowerCase() === "button"; + var name = elem.nodeName.toLowerCase(); + return name === "input" && "button" === elem.type || name === "button"; }, input: function( elem ) { return (/input|select|textarea|button/i).test( elem.nodeName ); + }, + + focus: function( elem ) { + return elem === elem.ownerDocument.activeElement; } }, setFilters: { @@ -4021,7 +4605,7 @@ return filter( elem, i, match, array ); } else if ( name === "contains" ) { - return (elem.textContent || elem.innerText || Sizzle.getText([ elem ]) || "").indexOf(match[3]) >= 0; + return (elem.textContent || elem.innerText || getText([ elem ]) || "").indexOf(match[3]) >= 0; } else if ( name === "not" ) { var not = match[3]; @@ -4040,7 +4624,10 @@ }, CHILD: function( elem, match ) { - var type = match[1], + var first, last, + doneName, parent, cache, + count, diff, + type = match[1], node = elem; switch ( type ) { @@ -4068,18 +4655,18 @@ return true; case "nth": - var first = match[2], - last = match[3]; + first = match[2]; + last = match[3]; if ( first === 1 && last === 0 ) { return true; } - var doneName = match[0], - parent = elem.parentNode; + doneName = match[0]; + parent = elem.parentNode; - if ( parent && (parent.sizcache !== doneName || !elem.nodeIndex) ) { - var count = 0; + if ( parent && (parent[ expando ] !== doneName || !elem.nodeIndex) ) { + count = 0; for ( node = parent.firstChild; node; node = node.nextSibling ) { if ( node.nodeType === 1 ) { @@ -4087,10 +4674,10 @@ } } - parent.sizcache = doneName; + parent[ expando ] = doneName; } - var diff = elem.nodeIndex - last; + diff = elem.nodeIndex - last; if ( first === 0 ) { return diff === 0; @@ -4106,7 +4693,7 @@ }, TAG: function( elem, match ) { - return (match === "*" && elem.nodeType === 1) || elem.nodeName.toLowerCase() === match; + return (match === "*" && elem.nodeType === 1) || !!elem.nodeName && elem.nodeName.toLowerCase() === match; }, CLASS: function( elem, match ) { @@ -4116,7 +4703,9 @@ ATTR: function( elem, match ) { var name = match[1], - result = Expr.attrHandle[ name ] ? + result = Sizzle.attr ? + Sizzle.attr( elem, name ) : + Expr.attrHandle[ name ] ? Expr.attrHandle[ name ]( elem ) : elem[ name ] != null ? elem[ name ] : @@ -4127,6 +4716,8 @@ return result == null ? type === "!=" : + !type && Sizzle.attr ? + result != null : type === "=" ? value === check : type === "*=" ? @@ -4229,6 +4820,16 @@ } else { sortOrder = function( a, b ) { + // The nodes are identical, we can exit early + if ( a === b ) { + hasDuplicate = true; + return 0; + + // Fallback to using sourceIndex (in IE) if it's available on both nodes + } else if ( a.sourceIndex && b.sourceIndex ) { + return a.sourceIndex - b.sourceIndex; + } + var al, bl, ap = [], bp = [], @@ -4236,13 +4837,8 @@ bup = b.parentNode, cur = aup; - // The nodes are identical, we can exit early - if ( a === b ) { - hasDuplicate = true; - return 0; - // If the nodes are siblings (or identical) we can do a quick check - } else if ( aup === bup ) { + if ( aup === bup ) { return siblingCheck( a, b ); // If no parents were found then the nodes are disconnected @@ -4302,26 +4898,6 @@ }; } -// Utility function for retreiving the text value of an array of DOM nodes -Sizzle.getText = function( elems ) { - var ret = "", elem; - - for ( var i = 0; elems[i]; i++ ) { - elem = elems[i]; - - // Get the text from text nodes and CDATA nodes - if ( elem.nodeType === 3 || elem.nodeType === 4 ) { - ret += elem.nodeValue; - - // Traverse everything else, except comment nodes - } else if ( elem.nodeType !== 8 ) { - ret += Sizzle.getText( elem.childNodes ); - } - } - - return ret; -}; - // Check to see if the browser returns elements by name when // querying by getElementById (and provide a workaround) (function(){ @@ -4599,13 +5175,13 @@ elem = elem[dir]; while ( elem ) { - if ( elem.sizcache === doneName ) { + if ( elem[ expando ] === doneName ) { match = checkSet[elem.sizset]; break; } if ( elem.nodeType === 1 && !isXML ){ - elem.sizcache = doneName; + elem[ expando ] = doneName; elem.sizset = i; } @@ -4632,14 +5208,14 @@ elem = elem[dir]; while ( elem ) { - if ( elem.sizcache === doneName ) { + if ( elem[ expando ] === doneName ) { match = checkSet[elem.sizset]; break; } if ( elem.nodeType === 1 ) { if ( !isXML ) { - elem.sizcache = doneName; + elem[ expando ] = doneName; elem.sizset = i; } @@ -4687,7 +5263,7 @@ return documentElement ? documentElement.nodeName !== "HTML" : false; }; -var posProcess = function( selector, context ) { +var posProcess = function( selector, context, seed ) { var match, tmpSet = [], later = "", @@ -4703,13 +5279,16 @@ selector = Expr.relative[selector] ? selector + "*" : selector; for ( var i = 0, l = root.length; i < l; i++ ) { - Sizzle( selector, root[i], tmpSet ); + Sizzle( selector, root[i], tmpSet, seed ); } return Sizzle.filter( later, tmpSet ); }; // EXPOSE +// Override sizzle attribute retrieval +Sizzle.attr = jQuery.attr; +Sizzle.selectors.attrMap = {}; jQuery.find = Sizzle; jQuery.expr = Sizzle.selectors; jQuery.expr[":"] = jQuery.expr.filters; @@ -4739,17 +5318,30 @@ jQuery.fn.extend({ find: function( selector ) { + var self = this, + i, l; + + if ( typeof selector !== "string" ) { + return jQuery( selector ).filter(function() { + for ( i = 0, l = self.length; i < l; i++ ) { + if ( jQuery.contains( self[ i ], this ) ) { + return true; + } + } + }); + } + var ret = this.pushStack( "", "find", selector ), - length = 0; - - for ( var i = 0, l = this.length; i < l; i++ ) { + length, n, r; + + for ( i = 0, l = this.length; i < l; i++ ) { length = ret.length; jQuery.find( selector, this[i], ret ); if ( i > 0 ) { // Make sure that the results are unique - for ( var n = length; n < ret.length; n++ ) { - for ( var r = 0; r < length; r++ ) { + for ( n = length; n < ret.length; n++ ) { + for ( r = 0; r < length; r++ ) { if ( ret[r] === ret[n] ) { ret.splice(n--, 1); break; @@ -4782,47 +5374,42 @@ }, is: function( selector ) { - return !!selector && jQuery.filter( selector, this ).length > 0; + return !!selector && ( + typeof selector === "string" ? + // If this is a positional selector, check membership in the returned set + // so $("p:first").is("p:last") won't return true for a doc with two "p". + POS.test( selector ) ? + jQuery( selector, this.context ).index( this[0] ) >= 0 : + jQuery.filter( selector, this ).length > 0 : + this.filter( selector ).length > 0 ); }, closest: function( selectors, context ) { var ret = [], i, l, cur = this[0]; - + + // Array (deprecated as of jQuery 1.7) if ( jQuery.isArray( selectors ) ) { - var match, selector, - matches = {}, - level = 1; - - if ( cur && selectors.length ) { - for ( i = 0, l = selectors.length; i < l; i++ ) { - selector = selectors[i]; - - if ( !matches[selector] ) { - matches[selector] = jQuery.expr.match.POS.test( selector ) ? - jQuery( selector, context || this.context ) : - selector; + var level = 1; + + while ( cur && cur.ownerDocument && cur !== context ) { + for ( i = 0; i < selectors.length; i++ ) { + + if ( jQuery( cur ).is( selectors[ i ] ) ) { + ret.push({ selector: selectors[ i ], elem: cur, level: level }); } } - while ( cur && cur.ownerDocument && cur !== context ) { - for ( selector in matches ) { - match = matches[selector]; - - if ( match.jquery ? match.index(cur) > -1 : jQuery(cur).is(match) ) { - ret.push({ selector: selector, elem: cur, level: level }); - } - } - - cur = cur.parentNode; - level++; - } + cur = cur.parentNode; + level++; } return ret; } - var pos = POS.test( selectors ) ? - jQuery( selectors, context || this.context ) : null; + // String + var pos = POS.test( selectors ) || typeof selectors !== "string" ? + jQuery( selectors, context || this.context ) : + 0; for ( i = 0, l = this.length; i < l; i++ ) { cur = this[i]; @@ -4834,14 +5421,14 @@ } else { cur = cur.parentNode; - if ( !cur || !cur.ownerDocument || cur === context ) { + if ( !cur || !cur.ownerDocument || cur === context || cur.nodeType === 11 ) { break; } } } } - ret = ret.length > 1 ? jQuery.unique(ret) : ret; + ret = ret.length > 1 ? jQuery.unique( ret ) : ret; return this.pushStack( ret, "closest", selectors ); }, @@ -4849,12 +5436,17 @@ // Determine the position of an element within // the matched set of elements index: function( elem ) { - if ( !elem || typeof elem === "string" ) { - return jQuery.inArray( this[0], - // If it receives a string, the selector is used - // If it receives nothing, the siblings are used - elem ? jQuery( elem ) : this.parent().children() ); - } + + // No argument, return index in parent + if ( !elem ) { + return ( this[0] && this[0].parentNode ) ? this.prevAll().length : -1; + } + + // index in selector + if ( typeof elem === "string" ) { + return jQuery.inArray( this[0], jQuery( elem ) ); + } + // Locate the position of the desired element return jQuery.inArray( // If it receives a jQuery object, the first element is used @@ -4864,7 +5456,7 @@ add: function( selector, context ) { var set = typeof selector === "string" ? jQuery( selector, context ) : - jQuery.makeArray( selector ), + jQuery.makeArray( selector && selector.nodeType ? [ selector ] : selector ), all = jQuery.merge( this.get(), set ); return this.pushStack( isDisconnected( set[0] ) || isDisconnected( all[0] ) ? @@ -4925,12 +5517,7 @@ } }, function( name, fn ) { jQuery.fn[ name ] = function( until, selector ) { - var ret = jQuery.map( this, fn, until ), - // The variable 'args' was introduced in - // https://github.com/jquery/jquery/commit/52a0238 - // to work around a bug in Chrome 10 (Dev) and should be removed when the bug is fixed. - // http://code.google.com/p/v8/issues/detail?id=1050 - args = slice.call(arguments); + var ret = jQuery.map( this, fn, until ); if ( !runtil.test( name ) ) { selector = until; @@ -4946,7 +5533,7 @@ ret = ret.reverse(); } - return this.pushStack( ret, name, args.join(",") ); + return this.pushStack( ret, name, slice.call( arguments ).join(",") ); }; }); @@ -5002,6 +5589,11 @@ // Implement the identical functionality for filter and not function winnow( elements, qualifier, keep ) { + + // Can't pass null or undefined to indexOf in Firefox 4 + // Set to 0 to skip string check + qualifier = qualifier || 0; + if ( jQuery.isFunction( qualifier ) ) { return jQuery.grep(elements, function( elem, i ) { var retVal = !!qualifier.call( elem, i, elem ); @@ -5010,7 +5602,7 @@ } else if ( qualifier.nodeType ) { return jQuery.grep(elements, function( elem, i ) { - return (elem === qualifier) === keep; + return ( elem === qualifier ) === keep; }); } else if ( typeof qualifier === "string" ) { @@ -5026,22 +5618,42 @@ } return jQuery.grep(elements, function( elem, i ) { - return (jQuery.inArray( elem, qualifier ) >= 0) === keep; + return ( jQuery.inArray( elem, qualifier ) >= 0 ) === keep; }); } -var rinlinejQuery = / jQuery\d+="(?:\d+|null)"/g, +function createSafeFragment( document ) { + var list = nodeNames.split( "|" ), + safeFrag = document.createDocumentFragment(); + + if ( safeFrag.createElement ) { + while ( list.length ) { + safeFrag.createElement( + list.pop() + ); + } + } + return safeFrag; +} + +var nodeNames = "abbr|article|aside|audio|canvas|datalist|details|figcaption|figure|footer|" + + "header|hgroup|mark|meter|nav|output|progress|section|summary|time|video", + rinlinejQuery = / jQuery\d+="(?:\d+|null)"/g, rleadingWhitespace = /^\s+/, rxhtmlTag = /<(?!area|br|col|embed|hr|img|input|link|meta|param)(([\w:]+)[^>]*)\/>/ig, rtagName = /<([\w:]+)/, rtbody = /<tbody/i, rhtml = /<|&#?\w+;/, + rnoInnerhtml = /<(?:script|style)/i, rnocache = /<(?:script|object|embed|option|style)/i, + rnoshimcache = new RegExp("<(?:" + nodeNames + ")", "i"), // checked="checked" or checked rchecked = /checked\s*(?:[^=]|=\s*.checked.)/i, + rscriptType = /\/(java|ecma)script/i, + rcleanScript = /^\s*<!(?:\[CDATA\[|\-\-)/, wrapMap = { option: [ 1, "<select multiple='multiple'>", "</select>" ], legend: [ 1, "<fieldset>", "</fieldset>" ], @@ -5051,7 +5663,8 @@ col: [ 2, "<table><tbody></tbody><colgroup>", "</colgroup></table>" ], area: [ 1, "<map>", "</map>" ], _default: [ 0, "", "" ] - }; + }, + safeFragment = createSafeFragment( document ); wrapMap.optgroup = wrapMap.option; wrapMap.tbody = wrapMap.tfoot = wrapMap.colgroup = wrapMap.caption = wrapMap.thead; @@ -5102,7 +5715,7 @@ } return elem; - }).append(this); + }).append( this ); } return this; @@ -5129,8 +5742,10 @@ }, wrap: function( html ) { - return this.each(function() { - jQuery( this ).wrapAll( html ); + var isFunction = jQuery.isFunction( html ); + + return this.each(function(i) { + jQuery( this ).wrapAll( isFunction ? html.call(this, i) : html ); }); }, @@ -5164,7 +5779,7 @@ this.parentNode.insertBefore( elem, this ); }); } else if ( arguments.length ) { - var set = jQuery(arguments[0]); + var set = jQuery.clean( arguments ); set.push.apply( set, this.toArray() ); return this.pushStack( set, "before", arguments ); } @@ -5177,7 +5792,7 @@ }); } else if ( arguments.length ) { var set = this.pushStack( this, "after", arguments ); - set.push.apply( set, jQuery(arguments[0]).toArray() ); + set.push.apply( set, jQuery.clean(arguments) ); return set; } }, @@ -5232,7 +5847,7 @@ null; // See if we can take a shortcut and just use innerHTML - } else if ( typeof value === "string" && !rnocache.test( value ) && + } else if ( typeof value === "string" && !rnoInnerhtml.test( value ) && (jQuery.support.leadingWhitespace || !rleadingWhitespace.test( value )) && !wrapMap[ (rtagName.exec( value ) || ["", ""])[1].toLowerCase() ] ) { @@ -5358,7 +5973,7 @@ // in certain situations (Bug #8070). // Fragments from the fragment cache must always be cloned and never used // in place. - results.cacheable || (l > 1 && i < lastIndex) ? + results.cacheable || ( l > 1 && i < lastIndex ) ? jQuery.clone( fragment, true, true ) : fragment ); @@ -5387,44 +6002,49 @@ return; } - var internalKey = jQuery.expando, - oldData = jQuery.data( src ), - curData = jQuery.data( dest, oldData ); - - // Switch to use the internal data object, if it exists, for the next - // stage of data copying - if ( (oldData = oldData[ internalKey ]) ) { - var events = oldData.events; - curData = curData[ internalKey ] = jQuery.extend({}, oldData); - - if ( events ) { - delete curData.handle; - curData.events = {}; - - for ( var type in events ) { - for ( var i = 0, l = events[ type ].length; i < l; i++ ) { - jQuery.event.add( dest, type + ( events[ type ][ i ].namespace ? "." : "" ) + events[ type ][ i ].namespace, events[ type ][ i ], events[ type ][ i ].data ); - } - } - } + var type, i, l, + oldData = jQuery._data( src ), + curData = jQuery._data( dest, oldData ), + events = oldData.events; + + if ( events ) { + delete curData.handle; + curData.events = {}; + + for ( type in events ) { + for ( i = 0, l = events[ type ].length; i < l; i++ ) { + jQuery.event.add( dest, type + ( events[ type ][ i ].namespace ? "." : "" ) + events[ type ][ i ].namespace, events[ type ][ i ], events[ type ][ i ].data ); + } + } + } + + // make the cloned public data object a copy from the original + if ( curData.data ) { + curData.data = jQuery.extend( {}, curData.data ); } } -function cloneFixAttributes(src, dest) { +function cloneFixAttributes( src, dest ) { + var nodeName; + // We do not need to do anything for non-Elements if ( dest.nodeType !== 1 ) { return; } - var nodeName = dest.nodeName.toLowerCase(); - // clearAttributes removes the attributes, which we don't want, // but also removes the attachEvent events, which we *do* want - dest.clearAttributes(); + if ( dest.clearAttributes ) { + dest.clearAttributes(); + } // mergeAttributes, in contrast, only merges back on the // original attributes, not the events - dest.mergeAttributes(src); + if ( dest.mergeAttributes ) { + dest.mergeAttributes( src ); + } + + nodeName = dest.nodeName.toLowerCase(); // IE6-8 fail to clone children inside object elements that use // the proprietary classid attribute value (rather than the type @@ -5463,22 +6083,38 @@ } jQuery.buildFragment = function( args, nodes, scripts ) { - var fragment, cacheable, cacheresults, - doc = (nodes && nodes[0] ? nodes[0].ownerDocument || nodes[0] : document); + var fragment, cacheable, cacheresults, doc, + first = args[ 0 ]; + + // nodes may contain either an explicit document object, + // a jQuery collection or context object. + // If nodes[0] contains a valid object to assign to doc + if ( nodes && nodes[0] ) { + doc = nodes[0].ownerDocument || nodes[0]; + } + + // Ensure that an attr object doesn't incorrectly stand in as a document object + // Chrome and Firefox seem to allow this to occur and will throw exception + // Fixes #8950 + if ( !doc.createDocumentFragment ) { + doc = document; + } // Only cache "small" (1/2 KB) HTML strings that are associated with the main document // Cloning options loses the selected state, so don't cache them // IE 6 doesn't like it when you put <object> or <embed> elements in a fragment // Also, WebKit does not clone 'checked' attributes on cloneNode, so don't cache - if ( args.length === 1 && typeof args[0] === "string" && args[0].length < 512 && doc === document && - args[0].charAt(0) === "<" && !rnocache.test( args[0] ) && (jQuery.support.checkClone || !rchecked.test( args[0] )) ) { + // Lastly, IE6,7,8 will not correctly reuse cached fragments that were created from unknown elems #10501 + if ( args.length === 1 && typeof first === "string" && first.length < 512 && doc === document && + first.charAt(0) === "<" && !rnocache.test( first ) && + (jQuery.support.checkClone || !rchecked.test( first )) && + (jQuery.support.html5Clone || !rnoshimcache.test( first )) ) { cacheable = true; - cacheresults = jQuery.fragments[ args[0] ]; - if ( cacheresults ) { - if ( cacheresults !== 1 ) { - fragment = cacheresults; - } + + cacheresults = jQuery.fragments[ first ]; + if ( cacheresults && cacheresults !== 1 ) { + fragment = cacheresults; } } @@ -5488,7 +6124,7 @@ } if ( cacheable ) { - jQuery.fragments[ args[0] ] = cacheresults ? fragment : 1; + jQuery.fragments[ first ] = cacheresults ? fragment : 1; } return { fragment: fragment, cacheable: cacheable }; @@ -5514,7 +6150,7 @@ } else { for ( var i = 0, l = insert.length; i < l; i++ ) { - var elems = (i > 0 ? this.clone(true) : this).get(); + var elems = ( i > 0 ? this.clone(true) : this ).get(); jQuery( insert[i] )[ original ]( elems ); ret = ret.concat( elems ); } @@ -5525,10 +6161,10 @@ }); function getAll( elem ) { - if ( "getElementsByTagName" in elem ) { + if ( typeof elem.getElementsByTagName !== "undefined" ) { return elem.getElementsByTagName( "*" ); - - } else if ( "querySelectorAll" in elem ) { + + } else if ( typeof elem.querySelectorAll !== "undefined" ) { return elem.querySelectorAll( "*" ); } else { @@ -5536,12 +6172,41 @@ } } +// Used in clean, fixes the defaultChecked property +function fixDefaultChecked( elem ) { + if ( elem.type === "checkbox" || elem.type === "radio" ) { + elem.defaultChecked = elem.checked; + } +} +// Finds all inputs and passes them to fixDefaultChecked +function findInputs( elem ) { + var nodeName = ( elem.nodeName || "" ).toLowerCase(); + if ( nodeName === "input" ) { + fixDefaultChecked( elem ); + // Skip scripts, get other children + } else if ( nodeName !== "script" && typeof elem.getElementsByTagName !== "undefined" ) { + jQuery.grep( elem.getElementsByTagName("input"), fixDefaultChecked ); + } +} + +// Derived From: http://www.iecss.com/shimprove/javascript/shimprove.1-0-1.js +function shimCloneNode( elem ) { + var div = document.createElement( "div" ); + safeFragment.appendChild( div ); + + div.innerHTML = elem.outerHTML; + return div.firstChild; +} + jQuery.extend({ clone: function( elem, dataAndEvents, deepDataAndEvents ) { - var clone = elem.cloneNode(true), - srcElements, - destElements, - i; + var srcElements, + destElements, + i, + // IE<=8 does not properly clone detached, unknown element nodes + clone = jQuery.support.html5Clone || !rnoshimcache.test( "<" + elem.nodeName ) ? + elem.cloneNode( true ) : + shimCloneNode( elem ); if ( (!jQuery.support.noCloneEvent || !jQuery.support.noCloneChecked) && (elem.nodeType === 1 || elem.nodeType === 11) && !jQuery.isXMLDoc(elem) ) { @@ -5553,8 +6218,7 @@ cloneFixAttributes( elem, clone ); - // Using Sizzle here is crazy slow, so we use getElementsByTagName - // instead + // Using Sizzle here is crazy slow, so we use getElementsByTagName instead srcElements = getAll( elem ); destElements = getAll( clone ); @@ -5562,7 +6226,10 @@ // with an element if you are cloning the body and one of the // elements on the page has a name or id of "length" for ( i = 0; srcElements[i]; ++i ) { - cloneFixAttributes( srcElements[i], destElements[i] ); + // Ensure that the destination node is not null; Fixes #9587 + if ( destElements[i] ) { + cloneFixAttributes( srcElements[i], destElements[i] ); + } } } @@ -5580,10 +6247,15 @@ } } + srcElements = destElements = null; + // Return the cloned set return clone; -}, + }, + clean: function( elems, context, fragment, scripts ) { + var checkScriptType; + context = context || document; // !context.createElement fails in IE with an error but returns typeof 'object' @@ -5591,7 +6263,7 @@ context = context.ownerDocument || context[0] && context[0].ownerDocument || document; } - var ret = []; + var ret = [], j; for ( var i = 0, elem; (elem = elems[i]) != null; i++ ) { if ( typeof elem === "number" ) { @@ -5603,54 +6275,76 @@ } // Convert html string into DOM nodes - if ( typeof elem === "string" && !rhtml.test( elem ) ) { - elem = context.createTextNode( elem ); - - } else if ( typeof elem === "string" ) { - // Fix "XHTML"-style tags in all browsers - elem = elem.replace(rxhtmlTag, "<$1></$2>"); - - // Trim whitespace, otherwise indexOf won't work as expected - var tag = (rtagName.exec( elem ) || ["", ""])[1].toLowerCase(), - wrap = wrapMap[ tag ] || wrapMap._default, - depth = wrap[0], - div = context.createElement("div"); - - // Go to html and back, then peel off extra wrappers - div.innerHTML = wrap[1] + elem + wrap[2]; - - // Move to the right depth - while ( depth-- ) { - div = div.lastChild; - } - - // Remove IE's autoinserted <tbody> from table fragments - if ( !jQuery.support.tbody ) { - - // String was a <table>, *may* have spurious <tbody> - var hasBody = rtbody.test(elem), - tbody = tag === "table" && !hasBody ? - div.firstChild && div.firstChild.childNodes : - - // String was a bare <thead> or <tfoot> - wrap[1] === "<table>" && !hasBody ? - div.childNodes : - []; - - for ( var j = tbody.length - 1; j >= 0 ; --j ) { - if ( jQuery.nodeName( tbody[ j ], "tbody" ) && !tbody[ j ].childNodes.length ) { - tbody[ j ].parentNode.removeChild( tbody[ j ] ); + if ( typeof elem === "string" ) { + if ( !rhtml.test( elem ) ) { + elem = context.createTextNode( elem ); + } else { + // Fix "XHTML"-style tags in all browsers + elem = elem.replace(rxhtmlTag, "<$1></$2>"); + + // Trim whitespace, otherwise indexOf won't work as expected + var tag = ( rtagName.exec( elem ) || ["", ""] )[1].toLowerCase(), + wrap = wrapMap[ tag ] || wrapMap._default, + depth = wrap[0], + div = context.createElement("div"); + + // Append wrapper element to unknown element safe doc fragment + if ( context === document ) { + // Use the fragment we've already created for this document + safeFragment.appendChild( div ); + } else { + // Use a fragment created with the owner document + createSafeFragment( context ).appendChild( div ); + } + + // Go to html and back, then peel off extra wrappers + div.innerHTML = wrap[1] + elem + wrap[2]; + + // Move to the right depth + while ( depth-- ) { + div = div.lastChild; + } + + // Remove IE's autoinserted <tbody> from table fragments + if ( !jQuery.support.tbody ) { + + // String was a <table>, *may* have spurious <tbody> + var hasBody = rtbody.test(elem), + tbody = tag === "table" && !hasBody ? + div.firstChild && div.firstChild.childNodes : + + // String was a bare <thead> or <tfoot> + wrap[1] === "<table>" && !hasBody ? + div.childNodes : + []; + + for ( j = tbody.length - 1; j >= 0 ; --j ) { + if ( jQuery.nodeName( tbody[ j ], "tbody" ) && !tbody[ j ].childNodes.length ) { + tbody[ j ].parentNode.removeChild( tbody[ j ] ); + } } } - } - - // IE completely kills leading whitespace when innerHTML is used - if ( !jQuery.support.leadingWhitespace && rleadingWhitespace.test( elem ) ) { - div.insertBefore( context.createTextNode( rleadingWhitespace.exec(elem)[0] ), div.firstChild ); - } - - elem = div.childNodes; + // IE completely kills leading whitespace when innerHTML is used + if ( !jQuery.support.leadingWhitespace && rleadingWhitespace.test( elem ) ) { + div.insertBefore( context.createTextNode( rleadingWhitespace.exec(elem)[0] ), div.firstChild ); + } + + elem = div.childNodes; + } + } + + // Resets defaultChecked for any radios and checkboxes + // about to be appended to the DOM in IE 6/7 (#8060) + var len; + if ( !jQuery.support.appendChecked ) { + if ( elem[0] && typeof (len = elem.length) === "number" ) { + for ( j = 0; j < len; j++ ) { + findInputs( elem[j] ); + } + } else { + findInputs( elem ); + } } if ( elem.nodeType ) { @@ -5661,13 +6355,18 @@ } if ( fragment ) { + checkScriptType = function( elem ) { + return !elem.type || rscriptType.test( elem.type ); + }; for ( i = 0; ret[i]; i++ ) { if ( scripts && jQuery.nodeName( ret[i], "script" ) && (!ret[i].type || ret[i].type.toLowerCase() === "text/javascript") ) { scripts.push( ret[i].parentNode ? ret[i].parentNode.removeChild( ret[i] ) : ret[i] ); } else { if ( ret[i].nodeType === 1 ) { - ret.splice.apply( ret, [i + 1, 0].concat(jQuery.makeArray(ret[i].getElementsByTagName("script"))) ); + var jsTags = jQuery.grep( ret[i].getElementsByTagName( "script" ), checkScriptType ); + + ret.splice.apply( ret, [i + 1, 0].concat( jsTags ) ); } fragment.appendChild( ret[i] ); } @@ -5678,7 +6377,9 @@ }, cleanData: function( elems ) { - var data, id, cache = jQuery.cache, internalKey = jQuery.expando, special = jQuery.event.special, + var data, id, + cache = jQuery.cache, + special = jQuery.event.special, deleteExpando = jQuery.support.deleteExpando; for ( var i = 0, elem; (elem = elems[i]) != null; i++ ) { @@ -5689,7 +6390,7 @@ id = elem[ jQuery.expando ]; if ( id ) { - data = cache[ id ] && cache[ id ][ internalKey ]; + data = cache[ id ]; if ( data && data.events ) { for ( var type in data.events ) { @@ -5729,7 +6430,7 @@ dataType: "script" }); } else { - jQuery.globalEval( elem.text || elem.textContent || elem.innerHTML || "" ); + jQuery.globalEval( ( elem.text || elem.textContent || elem.innerHTML || "" ).replace( rcleanScript, "/*$0*/" ) ); } if ( elem.parentNode ) { @@ -5742,11 +6443,11 @@ var ralpha = /alpha$[^)]*$/i, ropacity = /opacity=([^)]*)/, - rdashAlpha = /-([a-z])/ig, // fixed for IE9, see #8346 rupper = /([A-Z]|^ms)/g, rnumpx = /^-?\d+(?:px)?$/i, rnum = /^-?\d/, + rrelNum = /^([\-+])=([\-+.\de]+)/, cssShow = { position: "absolute", visibility: "hidden", display: "block" }, cssWidth = [ "Left", "Right" ], @@ -5754,11 +6455,7 @@ curCSS, getComputedStyle, - currentStyle, - - fcamelCase = function( all, letter ) { - return letter.toUpperCase(); - }; + currentStyle; jQuery.fn.css = function( name, value ) { // Setting 'undefined' is a no-op @@ -5793,11 +6490,14 @@ // Exclude the following css properties to add px cssNumber: { + "fillOpacity": true, + "fontWeight": true, + "lineHeight": true, + "opacity": true, + "orphans": true, + "widows": true, "zIndex": true, - "fontWeight": true, - "opacity": true, - "zoom": true, - "lineHeight": true + "zoom": true }, // Add in properties whose names you wish to fix before @@ -5815,20 +6515,29 @@ } // Make sure that we're working with the right name - var ret, origName = jQuery.camelCase( name ), + var ret, type, origName = jQuery.camelCase( name ), style = elem.style, hooks = jQuery.cssHooks[ origName ]; name = jQuery.cssProps[ origName ] || origName; // Check if we're setting a value if ( value !== undefined ) { + type = typeof value; + + // convert relative number strings (+= or -=) to relative numbers. #7345 + if ( type === "string" && (ret = rrelNum.exec( value )) ) { + value = ( +( ret[1] + 1) * +ret[2] ) + parseFloat( jQuery.css( elem, name ) ); + // Fixes bug #9237 + type = "number"; + } + // Make sure that NaN and null values aren't set. See: #7116 - if ( typeof value === "number" && isNaN( value ) || value == null ) { + if ( value == null || type === "number" && isNaN( value ) ) { return; } // If a number was passed in, add 'px' to the (except for certain CSS properties) - if ( typeof value === "number" && !jQuery.cssNumber[ origName ] ) { + if ( type === "number" && !jQuery.cssNumber[ origName ] ) { value += "px"; } @@ -5853,11 +6562,17 @@ }, css: function( elem, name, extra ) { + var ret, hooks; + // Make sure that we're working with the right name - var ret, origName = jQuery.camelCase( name ), - hooks = jQuery.cssHooks[ origName ]; - - name = jQuery.cssProps[ origName ] || origName; + name = jQuery.camelCase( name ); + hooks = jQuery.cssHooks[ name ]; + name = jQuery.cssProps[ name ] || name; + + // cssFloat needs a special treatment + if ( name === "cssFloat" ) { + name = "float"; + } // If a hook was provided get the computed value from there if ( hooks && "get" in hooks && (ret = hooks.get( elem, true, extra )) !== undefined ) { @@ -5865,7 +6580,7 @@ // Otherwise, if a way to get the computed value exists, use that } else if ( curCSS ) { - return curCSS( elem, name, origName ); + return curCSS( elem, name ); } }, @@ -5885,10 +6600,6 @@ for ( name in options ) { elem.style[ name ] = old[ name ]; } - }, - - camelCase: function( string ) { - return string.replace( rdashAlpha, fcamelCase ); } }); @@ -5902,44 +6613,21 @@ if ( computed ) { if ( elem.offsetWidth !== 0 ) { - val = getWH( elem, name, extra ); - + return getWH( elem, name, extra ); } else { jQuery.swap( elem, cssShow, function() { val = getWH( elem, name, extra ); }); } - if ( val <= 0 ) { - val = curCSS( elem, name, name ); - - if ( val === "0px" && currentStyle ) { - val = currentStyle( elem, name, name ); - } - - if ( val != null ) { - // Should return "auto" instead of 0, use 0 for - // temporary backwards-compat - return val === "" || val === "auto" ? "0px" : val; - } - } - - if ( val < 0 || val == null ) { - val = elem.style[ name ]; - - // Should return "auto" instead of 0, use 0 for - // temporary backwards-compat - return val === "" || val === "auto" ? "0px" : val; - } - - return typeof val === "string" ? val : val + "px"; + return val; } }, set: function( elem, value ) { if ( rnumpx.test( value ) ) { // ignore negative width and height values #1599 - value = parseFloat(value); + value = parseFloat( value ); if ( value >= 0 ) { return value + "px"; @@ -5956,27 +6644,39 @@ jQuery.cssHooks.opacity = { get: function( elem, computed ) { // IE uses filters for opacity - return ropacity.test((computed && elem.currentStyle ? elem.currentStyle.filter : elem.style.filter) || "") ? - (parseFloat(RegExp.$1) / 100) + "" : + return ropacity.test( (computed && elem.currentStyle ? elem.currentStyle.filter : elem.style.filter) || "" ) ? + ( parseFloat( RegExp.$1 ) / 100 ) + "" : computed ? "1" : ""; }, set: function( elem, value ) { - var style = elem.style; + var style = elem.style, + currentStyle = elem.currentStyle, + opacity = jQuery.isNumeric( value ) ? "alpha(opacity=" + value * 100 + ")" : "", + filter = currentStyle && currentStyle.filter || style.filter || ""; // IE has trouble with opacity if it does not have layout // Force it by setting the zoom level style.zoom = 1; - // Set the alpha filter to set the opacity - var opacity = jQuery.isNaN(value) ? - "" : - "alpha(opacity=" + value * 100 + ")", - filter = style.filter || ""; - - style.filter = ralpha.test(filter) ? - filter.replace(ralpha, opacity) : - style.filter + ' ' + opacity; + // if setting opacity to 1, and no other filters exist - attempt to remove filter attribute #6652 + if ( value >= 1 && jQuery.trim( filter.replace( ralpha, "" ) ) === "" ) { + + // Setting style.filter to null, "" & " " still leave "filter:" in the cssText + // if "filter:" is present at all, clearType is disabled, we want to avoid this + // style.removeAttribute is IE Only, but so apparently is this code path... + style.removeAttribute( "filter" ); + + // if there there is no filter style applied in a css rule, we are done + if ( currentStyle && !currentStyle.filter ) { + return; + } + } + + // otherwise, set new filter values + style.filter = ralpha.test( filter ) ? + filter.replace( ralpha, opacity ) : + filter + " " + opacity; } }; } @@ -6004,16 +6704,13 @@ }); if ( document.defaultView && document.defaultView.getComputedStyle ) { - getComputedStyle = function( elem, newName, name ) { + getComputedStyle = function( elem, name ) { var ret, defaultView, computedStyle; name = name.replace( rupper, "-$1" ).toLowerCase(); - if ( !(defaultView = elem.ownerDocument.defaultView) ) { - return undefined; - } - - if ( (computedStyle = defaultView.getComputedStyle( elem, null )) ) { + if ( (defaultView = elem.ownerDocument.defaultView) && + (computedStyle = defaultView.getComputedStyle( elem, null )) ) { ret = computedStyle.getPropertyValue( name ); if ( ret === "" && !jQuery.contains( elem.ownerDocument.documentElement, elem ) ) { ret = jQuery.style( elem, name ); @@ -6026,25 +6723,32 @@ if ( document.documentElement.currentStyle ) { currentStyle = function( elem, name ) { - var left, + var left, rsLeft, uncomputed, ret = elem.currentStyle && elem.currentStyle[ name ], - rsLeft = elem.runtimeStyle && elem.runtimeStyle[ name ], style = elem.style; + // Avoid setting ret to empty string here + // so we don't default to auto + if ( ret === null && style && (uncomputed = style[ name ]) ) { + ret = uncomputed; + } + // From the awesome hack by Dean Edwards // http://erik.eae.net/archives/2007/07/27/18.54.15/#comment-102291 // If we're not dealing with a regular pixel number // but a number that has a weird ending, we need to convert it to pixels if ( !rnumpx.test( ret ) && rnum.test( ret ) ) { + // Remember the original values left = style.left; + rsLeft = elem.runtimeStyle && elem.runtimeStyle.left; // Put in the new values to get a computed value out if ( rsLeft ) { elem.runtimeStyle.left = elem.currentStyle.left; } - style.left = name === "fontSize" ? "1em" : (ret || 0); + style.left = name === "fontSize" ? "1em" : ( ret || 0 ); ret = style.pixelLeft + "px"; // Revert the changed values @@ -6061,27 +6765,52 @@ curCSS = getComputedStyle || currentStyle; function getWH( elem, name, extra ) { - var which = name === "width" ? cssWidth : cssHeight, - val = name === "width" ? elem.offsetWidth : elem.offsetHeight; - - if ( extra === "border" ) { - return val; - } - - jQuery.each( which, function() { - if ( !extra ) { - val -= parseFloat(jQuery.css( elem, "padding" + this )) || 0; - } - - if ( extra === "margin" ) { - val += parseFloat(jQuery.css( elem, "margin" + this )) || 0; - - } else { - val -= parseFloat(jQuery.css( elem, "border" + this + "Width" )) || 0; - } - }); - - return val; + + // Start with offset property + var val = name === "width" ? elem.offsetWidth : elem.offsetHeight, + which = name === "width" ? cssWidth : cssHeight, + i = 0, + len = which.length; + + if ( val > 0 ) { + if ( extra !== "border" ) { + for ( ; i < len; i++ ) { + if ( !extra ) { + val -= parseFloat( jQuery.css( elem, "padding" + which[ i ] ) ) || 0; + } + if ( extra === "margin" ) { + val += parseFloat( jQuery.css( elem, extra + which[ i ] ) ) || 0; + } else { + val -= parseFloat( jQuery.css( elem, "border" + which[ i ] + "Width" ) ) || 0; + } + } + } + + return val + "px"; + } + + // Fall back to computed then uncomputed css if necessary + val = curCSS( elem, name, name ); + if ( val < 0 || val == null ) { + val = elem.style[ name ] || 0; + } + // Normalize "", auto, and prepare for extra + val = parseFloat( val ) || 0; + + // Add padding, border, margin + if ( extra ) { + for ( ; i < len; i++ ) { + val += parseFloat( jQuery.css( elem, "padding" + which[ i ] ) ) || 0; + if ( extra !== "padding" ) { + val += parseFloat( jQuery.css( elem, "border" + which[ i ] + "Width" ) ) || 0; + } + if ( extra === "margin" ) { + val += parseFloat( jQuery.css( elem, extra + which[ i ] ) ) || 0; + } + } + } + + return val + "px"; } if ( jQuery.expr && jQuery.expr.filters ) { @@ -6089,7 +6818,7 @@ var width = elem.offsetWidth, height = elem.offsetHeight; - return (width === 0 && height === 0) || (!jQuery.support.reliableHiddenOffsets && (elem.style.display || jQuery.css( elem, "display" )) === "none"); + return ( width === 0 && height === 0 ) || (!jQuery.support.reliableHiddenOffsets && ((elem.style && elem.style.display) || jQuery.css( elem, "display" )) === "none"); }; jQuery.expr.filters.visible = function( elem ) { @@ -6105,9 +6834,9 @@ rCRLF = /\r?\n/g, rhash = /#.*$/, rheaders = /^(.*?):[ \t]*([^\r\n]*)\r?$/mg, // IE leaves an \r character at EOL - rinput = /^(?:color|date|datetime|email|hidden|month|number|password|range|search|tel|text|time|url|week)$/i, + rinput = /^(?:color|date|datetime|datetime-local|email|hidden|month|number|password|range|search|tel|text|time|url|week)$/i, // #7653, #8125, #8152: local protocol detection - rlocalProtocol = /^(?:about|app|app\-storage|.+\-extension|file|widget):$/, + rlocalProtocol = /^(?:about|app|app\-storage|.+\-extension|file|res|widget):$/, rnoContent = /^(?:GET|HEAD)$/, rprotocol = /^\/\//, rquery = /\?/, @@ -6115,10 +6844,6 @@ rselectTextarea = /^(?:select|textarea)/i, rspacesAjax = /\s+/, rts = /([?&])_=[^&]*/, - rucHeaders = /(^|\-)([a-z])/g, - rucHeadersFunc = function( _, $1, $2 ) { - return $1 + $2.toUpperCase(); - }, rurl = /^([\w\+\.\-]+:)(?:\/\/([^\/?#:]*)(?::(\d+))?)?/, // Keep a copy of the old load method @@ -6146,12 +6871,15 @@ ajaxLocation, // Document location segments - ajaxLocParts; + ajaxLocParts, + + // Avoid comment-prolog char sequence (#10098); must appease lint and evade compression + allTypes = ["*/"] + ["*"]; // #8138, IE may throw an exception when accessing -// a field from document.location if document.domain has been set +// a field from window.location if document.domain has been set try { - ajaxLocation = document.location.href; + ajaxLocation = location.href; } catch( e ) { // Use the href attribute of an A element // since IE will modify it given document.location @@ -6183,7 +6911,7 @@ placeBefore; // For each dataType in the dataTypeExpression - for(; i < length; i++ ) { + for ( ; i < length; i++ ) { dataType = dataTypes[ i ]; // We control if we're asked to add before // any existing element @@ -6199,7 +6927,7 @@ }; } -//Base inspection function for prefilters and transports +// Base inspection function for prefilters and transports function inspectPrefiltersOrTransports( structure, options, originalOptions, jqXHR, dataType /* internal */, inspected /* internal */ ) { @@ -6214,7 +6942,7 @@ executeOnly = ( structure === prefilters ), selection; - for(; i < length && ( executeOnly || !selection ); i++ ) { + for ( ; i < length && ( executeOnly || !selection ); i++ ) { selection = list[ i ]( options, originalOptions, jqXHR ); // If we got redirected to another dataType // we try there if executing only and not done already @@ -6239,6 +6967,22 @@ return selection; } +// A special extend for ajax options +// that takes "flat" options (not to be deep extended) +// Fixes #9887 +function ajaxExtend( target, src ) { + var key, deep, + flatOptions = jQuery.ajaxSettings.flatOptions || {}; + for ( key in src ) { + if ( src[ key ] !== undefined ) { + ( flatOptions[ key ] ? target : ( deep || ( deep = {} ) ) )[ key ] = src[ key ]; + } + } + if ( deep ) { + jQuery.extend( true, target, deep ); + } +} + jQuery.fn.extend({ load: function( url, params, callback ) { if ( typeof url !== "string" && _load ) { @@ -6346,9 +7090,9 @@ // Attach a bunch of functions for handling common AJAX events jQuery.each( "ajaxStart ajaxStop ajaxComplete ajaxError ajaxSuccess ajaxSend".split( " " ), function( i, o ){ jQuery.fn[ o ] = function( f ){ - return this.bind( o, f ); + return this.on( o, f ); }; -} ); +}); jQuery.each( [ "get", "post" ], function( i, method ) { jQuery[ method ] = function( url, data, callback, type ) { @@ -6367,7 +7111,7 @@ dataType: type }); }; -} ); +}); jQuery.extend({ @@ -6382,23 +7126,16 @@ // Creates a full fledged settings object into target // with both ajaxSettings and settings fields. // If target is omitted, writes into ajaxSettings. - ajaxSetup: function ( target, settings ) { - if ( !settings ) { - // Only one parameter, we extend ajaxSettings + ajaxSetup: function( target, settings ) { + if ( settings ) { + // Building a settings object + ajaxExtend( target, jQuery.ajaxSettings ); + } else { + // Extending ajaxSettings settings = target; - target = jQuery.extend( true, jQuery.ajaxSettings, settings ); - } else { - // target was provided, we extend into it - jQuery.extend( true, target, jQuery.ajaxSettings, settings ); - } - // Flatten fields we don't want deep extended - for( var field in { context: 1, url: 1 } ) { - if ( field in settings ) { - target[ field ] = settings[ field ]; - } else if( field in jQuery.ajaxSettings ) { - target[ field ] = jQuery.ajaxSettings[ field ]; - } - } + target = jQuery.ajaxSettings; + } + ajaxExtend( target, settings ); return target; }, @@ -6426,7 +7163,7 @@ html: "text/html", text: "text/plain", json: "application/json, text/javascript", - "*": "*/*" + "*": allTypes }, contents: { @@ -6456,6 +7193,15 @@ // Parse text as xml "text xml": jQuery.parseXML + }, + + // For options that shouldn't be deep extended: + // you can add your own custom options here if + // and when you create one that shouldn't be + // deep extended (see ajaxExtend) + flatOptions: { + context: true, + url: true } }, @@ -6486,13 +7232,14 @@ jQuery( callbackContext ) : jQuery.event, // Deferreds deferred = jQuery.Deferred(), - completeDeferred = jQuery._Deferred(), + completeDeferred = jQuery.Callbacks( "once memory" ), // Status-dependent callbacks statusCode = s.statusCode || {}, // ifModified key ifModifiedKey, // Headers (they are sent all at once) requestHeaders = {}, + requestHeadersNames = {}, // Response headers responseHeadersString, responseHeaders, @@ -6516,7 +7263,9 @@ // Caches the header setRequestHeader: function( name, value ) { if ( !state ) { - requestHeaders[ name.toLowerCase().replace( rucHeaders, rucHeadersFunc ) ] = value; + var lname = name.toLowerCase(); + name = requestHeadersNames[ lname ] = requestHeadersNames[ lname ] || name; + requestHeaders[ name ] = value; } return this; }, @@ -6563,7 +7312,7 @@ // Callback for when everything is done // It is defined here because jslint complains if it is declared // at the end of the function (which would be more logical and readable) - function done( status, statusText, responses, headers ) { + function done( status, nativeStatusText, responses, headers ) { // Called once if ( state === 2 ) { @@ -6586,11 +7335,12 @@ responseHeadersString = headers || ""; // Set readyState - jqXHR.readyState = status ? 4 : 0; + jqXHR.readyState = status > 0 ? 4 : 0; var isSuccess, success, error, + statusText = nativeStatusText, response = responses ? ajaxHandleResponses( s, jqXHR, responses ) : undefined, lastModified, etag; @@ -6632,7 +7382,7 @@ // We extract error from statusText // then normalize statusText and status for non-aborts error = statusText; - if( !statusText || status ) { + if ( !statusText || status ) { statusText = "error"; if ( status < 0 ) { status = 0; @@ -6642,7 +7392,7 @@ // Set data for the fake xhr object jqXHR.status = status; - jqXHR.statusText = statusText; + jqXHR.statusText = "" + ( nativeStatusText || statusText ); // Success/Error if ( isSuccess ) { @@ -6661,10 +7411,10 @@ } // Complete - completeDeferred.resolveWith( callbackContext, [ jqXHR, statusText ] ); + completeDeferred.fireWith( callbackContext, [ jqXHR, statusText ] ); if ( fireGlobals ) { - globalEventContext.trigger( "ajaxComplete", [ jqXHR, s] ); + globalEventContext.trigger( "ajaxComplete", [ jqXHR, s ] ); // Handle the global AJAX counter if ( !( --jQuery.active ) ) { jQuery.event.trigger( "ajaxStop" ); @@ -6676,14 +7426,14 @@ deferred.promise( jqXHR ); jqXHR.success = jqXHR.done; jqXHR.error = jqXHR.fail; - jqXHR.complete = completeDeferred.done; + jqXHR.complete = completeDeferred.add; // Status-dependent callbacks jqXHR.statusCode = function( map ) { if ( map ) { var tmp; if ( state < 2 ) { - for( tmp in map ) { + for ( tmp in map ) { statusCode[ tmp ] = [ statusCode[tmp], map[tmp] ]; } } else { @@ -6745,6 +7495,8 @@ // If data is available, append data to url if ( s.data ) { s.url += ( rquery.test( s.url ) ? "&" : "?" ) + s.data; + // #9682: remove data so that it's not used in an eventual retry + delete s.data; } // Get ifModifiedKey before adding the anti-cache parameter @@ -6758,30 +7510,33 @@ ret = s.url.replace( rts, "$1_=" + ts ); // if nothing was replaced, add timestamp to the end - s.url = ret + ( (ret === s.url ) ? ( rquery.test( s.url ) ? "&" : "?" ) + "_=" + ts : "" ); + s.url = ret + ( ( ret === s.url ) ? ( rquery.test( s.url ) ? "&" : "?" ) + "_=" + ts : "" ); } } // Set the correct header, if data is being sent if ( s.data && s.hasContent && s.contentType !== false || options.contentType ) { - requestHeaders[ "Content-Type" ] = s.contentType; + jqXHR.setRequestHeader( "Content-Type", s.contentType ); } // Set the If-Modified-Since and/or If-None-Match header, if in ifModified mode. if ( s.ifModified ) { ifModifiedKey = ifModifiedKey || s.url; if ( jQuery.lastModified[ ifModifiedKey ] ) { - requestHeaders[ "If-Modified-Since" ] = jQuery.lastModified[ ifModifiedKey ]; + jqXHR.setRequestHeader( "If-Modified-Since", jQuery.lastModified[ ifModifiedKey ] ); } if ( jQuery.etag[ ifModifiedKey ] ) { - requestHeaders[ "If-None-Match" ] = jQuery.etag[ ifModifiedKey ]; + jqXHR.setRequestHeader( "If-None-Match", jQuery.etag[ ifModifiedKey ] ); } } // Set the Accepts header for the server, depending on the dataType - requestHeaders.Accept = s.dataTypes[ 0 ] && s.accepts[ s.dataTypes[0] ] ? - s.accepts[ s.dataTypes[0] ] + ( s.dataTypes[ 0 ] !== "*" ? ", */*; q=0.01" : "" ) : - s.accepts[ "*" ]; + jqXHR.setRequestHeader( + "Accept", + s.dataTypes[ 0 ] && s.accepts[ s.dataTypes[0] ] ? + s.accepts[ s.dataTypes[0] ] + ( s.dataTypes[ 0 ] !== "*" ? ", " + allTypes + "; q=0.01" : "" ) : + s.accepts[ "*" ] + ); // Check for headers option for ( i in s.headers ) { @@ -6825,11 +7580,11 @@ transport.send( requestHeaders, done ); } catch (e) { // Propagate exception as error if not done - if ( status < 2 ) { + if ( state < 2 ) { done( -1, e ); // Simply rethrow otherwise } else { - jQuery.error( e ); + throw e; } } } @@ -6857,7 +7612,7 @@ // Serialize the form elements jQuery.each( a, function() { add( this.name, this.value ); - } ); + }); } else { // If traditional, encode the "old" way (the way 1.3.2 or older @@ -6873,7 +7628,7 @@ }); function buildParams( prefix, obj, traditional, add ) { - if ( jQuery.isArray( obj ) && obj.length ) { + if ( jQuery.isArray( obj ) ) { // Serialize array item. jQuery.each( obj, function( i, v ) { if ( traditional || rbracket.test( prefix ) ) { @@ -6893,16 +7648,9 @@ }); } else if ( !traditional && obj != null && typeof obj === "object" ) { - // If we see an array here, it is empty and should be treated as an empty - // object - if ( jQuery.isArray( obj ) || jQuery.isEmptyObject( obj ) ) { - add( prefix, "" ); - // Serialize object item. - } else { - for ( var name in obj ) { - buildParams( prefix + "[" + name + "]", obj[ name ], traditional, add ); - } + for ( var name in obj ) { + buildParams( prefix + "[" + name + "]", obj[ name ], traditional, add ); } } else { @@ -6940,7 +7688,7 @@ firstDataType; // Fill responseXXX fields - for( type in responseFields ) { + for ( type in responseFields ) { if ( type in responses ) { jqXHR[ responseFields[type] ] = responses[ type ]; } @@ -7019,13 +7767,13 @@ conv2; // For each dataType in the chain - for( i = 1; i < length; i++ ) { + for ( i = 1; i < length; i++ ) { // Create converters map // with lowercased keys if ( i === 1 ) { - for( key in s.converters ) { - if( typeof key === "string" ) { + for ( key in s.converters ) { + if ( typeof key === "string" ) { converters[ key.toLowerCase() ] = s.converters[ key ]; } } @@ -7036,7 +7784,7 @@ current = dataTypes[ i ]; // If current is auto dataType, update it to prev - if( current === "*" ) { + if ( current === "*" ) { current = prev; // If no auto and dataTypes are actually different } else if ( prev !== "*" && prev !== current ) { @@ -7048,7 +7796,7 @@ // If there is no direct converter, search transitively if ( !conv ) { conv2 = undefined; - for( conv1 in converters ) { + for ( conv1 in converters ) { tmp = conv1.split( " " ); if ( tmp[ 0 ] === prev || tmp[ 0 ] === "*" ) { conv2 = converters[ tmp[1] + " " + current ]; @@ -7095,13 +7843,12 @@ // Detect, normalize options and install callbacks for jsonp requests jQuery.ajaxPrefilter( "json jsonp", function( s, originalSettings, jqXHR ) { - var dataIsString = ( typeof s.data === "string" ); + var inspectData = s.contentType === "application/x-www-form-urlencoded" && + ( typeof s.data === "string" ); if ( s.dataTypes[ 0 ] === "jsonp" || - originalSettings.jsonpCallback || - originalSettings.jsonp != null || s.jsonp !== false && ( jsre.test( s.url ) || - dataIsString && jsre.test( s.data ) ) ) { + inspectData && jsre.test( s.data ) ) ) { var responseContainer, jsonpCallback = s.jsonpCallback = @@ -7109,20 +7856,12 @@ previous = window[ jsonpCallback ], url = s.url, data = s.data, - replace = "$1" + jsonpCallback + "$2", - cleanUp = function() { - // Set callback back to previous value - window[ jsonpCallback ] = previous; - // Call if it was a function and we have a response - if ( responseContainer && jQuery.isFunction( previous ) ) { - window[ jsonpCallback ]( responseContainer[ 0 ] ); - } - }; + replace = "$1" + jsonpCallback + "$2"; if ( s.jsonp !== false ) { url = url.replace( jsre, replace ); if ( s.url === url ) { - if ( dataIsString ) { + if ( inspectData ) { data = data.replace( jsre, replace ); } if ( s.data === data ) { @@ -7140,8 +7879,15 @@ responseContainer = [ response ]; }; - // Install cleanUp function - jqXHR.then( cleanUp, cleanUp ); + // Clean-up function + jqXHR.always(function() { + // Set callback back to previous value + window[ jsonpCallback ] = previous; + // Call if it was a function and we have a response + if ( responseContainer && jQuery.isFunction( previous ) ) { + window[ jsonpCallback ]( responseContainer[ 0 ] ); + } + }); // Use data converter to retrieve json after script execution s.converters["script json"] = function() { @@ -7157,7 +7903,7 @@ // Delegate to script return "script"; } -} ); +}); @@ -7187,7 +7933,7 @@ s.type = "GET"; s.global = false; } -} ); +}); // Bind script tag hack transport jQuery.ajaxTransport( "script", function(s) { @@ -7215,7 +7961,7 @@ // Attach handlers for all browsers script.onload = script.onreadystatechange = function( _, isAbort ) { - if ( !script.readyState || /loaded|complete/.test( script.readyState ) ) { + if ( isAbort || !script.readyState || /loaded|complete/.test( script.readyState ) ) { // Handle memory leak in IE script.onload = script.onreadystatechange = null; @@ -7246,27 +7992,20 @@ } }; } -} ); - - - - -var // #5280: next active xhr id and list of active xhrs' callbacks - xhrId = jQuery.now(), - xhrCallbacks, - - // XHR used to determine supports properties - testXHR; - -// #5280: Internet Explorer will keep connections alive if we don't abort on unload -function xhrOnUnloadAbort() { - jQuery( window ).unload(function() { +}); + + + + +var // #5280: Internet Explorer will keep connections alive if we don't abort on unload + xhrOnUnloadAbort = window.ActiveXObject ? function() { // Abort all pending requests for ( var key in xhrCallbacks ) { xhrCallbacks[ key ]( 0, 1 ); } - }); -} + } : false, + xhrId = 0, + xhrCallbacks; // Functions to create xhrs function createStandardXHR() { @@ -7296,15 +8035,13 @@ // For all other browsers, use the standard XMLHttpRequest object createStandardXHR; -// Test if we can create an xhr object -testXHR = jQuery.ajaxSettings.xhr(); -jQuery.support.ajax = !!testXHR; - -// Does this browser support crossDomain XHR requests -jQuery.support.cors = testXHR && ( "withCredentials" in testXHR ); - -// No need for the temporary xhr anymore -testXHR = undefined; +// Determine support properties +(function( xhr ) { + jQuery.extend( jQuery.support, { + ajax: !!xhr, + cors: !!xhr && ( "withCredentials" in xhr ) + }); +})( jQuery.ajaxSettings.xhr() ); // Create transport if the browser can provide an xhr if ( jQuery.support.ajax ) { @@ -7387,7 +8124,9 @@ // Do not keep as active anymore if ( handle ) { xhr.onreadystatechange = jQuery.noop; - delete xhrCallbacks[ handle ]; + if ( xhrOnUnloadAbort ) { + delete xhrCallbacks[ handle ]; + } } // If it's an abort @@ -7448,15 +8187,18 @@ if ( !s.async || xhr.readyState === 4 ) { callback(); } else { - // Create the active xhrs callbacks list if needed - // and attach the unload handler - if ( !xhrCallbacks ) { - xhrCallbacks = {}; - xhrOnUnloadAbort(); + handle = ++xhrId; + if ( xhrOnUnloadAbort ) { + // Create the active xhrs callbacks list if needed + // and attach the unload handler + if ( !xhrCallbacks ) { + xhrCallbacks = {}; + jQuery( window ).unload( xhrOnUnloadAbort ); + } + // Add to list of active xhrs callbacks + xhrCallbacks[ handle ] = callback; } - // Add to list of active xhrs callbacks - handle = xhrId++; - xhr.onreadystatechange = xhrCallbacks[ handle ] = callback; + xhr.onreadystatechange = callback; } }, @@ -7474,6 +8216,7 @@ var elemdisplay = {}, + iframe, iframeDoc, rfxtypes = /^(?:toggle|show|hide)$/, rfxnum = /^([+\-]=)?([\d+.\-]+)([a-z%]*)$/i, timerId, @@ -7484,42 +8227,49 @@ [ "width", "marginLeft", "marginRight", "paddingLeft", "paddingRight" ], // opacity animations [ "opacity" ] - ]; + ], + fxNow; jQuery.fn.extend({ show: function( speed, easing, callback ) { var elem, display; if ( speed || speed === 0 ) { - return this.animate( genFx("show", 3), speed, easing, callback); + return this.animate( genFx("show", 3), speed, easing, callback ); } else { for ( var i = 0, j = this.length; i < j; i++ ) { - elem = this[i]; - display = elem.style.display; - - // Reset the inline display of this element to learn if it is - // being hidden by cascaded rules or not - if ( !jQuery._data(elem, "olddisplay") && display === "none" ) { - display = elem.style.display = ""; - } - - // Set elements which have been overridden with display: none - // in a stylesheet to whatever the default browser style is - // for such an element - if ( display === "" && jQuery.css( elem, "display" ) === "none" ) { - jQuery._data(elem, "olddisplay", defaultDisplay(elem.nodeName)); + elem = this[ i ]; + + if ( elem.style ) { + display = elem.style.display; + + // Reset the inline display of this element to learn if it is + // being hidden by cascaded rules or not + if ( !jQuery._data(elem, "olddisplay") && display === "none" ) { + display = elem.style.display = ""; + } + + // Set elements which have been overridden with display: none + // in a stylesheet to whatever the default browser style is + // for such an element + if ( display === "" && jQuery.css(elem, "display") === "none" ) { + jQuery._data( elem, "olddisplay", defaultDisplay(elem.nodeName) ); + } } } // Set the display of most of the elements in a second loop // to avoid the constant reflow for ( i = 0; i < j; i++ ) { - elem = this[i]; - display = elem.style.display; - - if ( display === "" || display === "none" ) { - elem.style.display = jQuery._data(elem, "olddisplay") || ""; + elem = this[ i ]; + + if ( elem.style ) { + display = elem.style.display; + + if ( display === "" || display === "none" ) { + elem.style.display = jQuery._data( elem, "olddisplay" ) || ""; + } } } @@ -7532,18 +8282,27 @@ return this.animate( genFx("hide", 3), speed, easing, callback); } else { - for ( var i = 0, j = this.length; i < j; i++ ) { - var display = jQuery.css( this[i], "display" ); - - if ( display !== "none" && !jQuery._data( this[i], "olddisplay" ) ) { - jQuery._data( this[i], "olddisplay", display ); + var elem, display, + i = 0, + j = this.length; + + for ( ; i < j; i++ ) { + elem = this[i]; + if ( elem.style ) { + display = jQuery.css( elem, "display" ); + + if ( display !== "none" && !jQuery._data( elem, "olddisplay" ) ) { + jQuery._data( elem, "olddisplay", display ); + } } } // Set the display of the elements in a second loop // to avoid the constant reflow for ( i = 0; i < j; i++ ) { - this[i].style.display = "none"; + if ( this[i].style ) { + this[i].style.display = "none"; + } } return this; @@ -7578,35 +8337,57 @@ }, animate: function( prop, speed, easing, callback ) { - var optall = jQuery.speed(speed, easing, callback); + var optall = jQuery.speed( speed, easing, callback ); if ( jQuery.isEmptyObject( prop ) ) { - return this.each( optall.complete ); - } - - return this[ optall.queue === false ? "each" : "queue" ](function() { + return this.each( optall.complete, [ false ] ); + } + + // Do not change referenced properties as per-property easing will be lost + prop = jQuery.extend( {}, prop ); + + function doAnimation() { // XXX 'this' does not always have a nodeName when running the // test suite - var opt = jQuery.extend({}, optall), p, + if ( optall.queue === false ) { + jQuery._mark( this ); + } + + var opt = jQuery.extend( {}, optall ), isElement = this.nodeType === 1, hidden = isElement && jQuery(this).is(":hidden"), - self = this; + name, val, p, e, + parts, start, end, unit, + method; + + // will store per property easing and be used to determine when an animation is complete + opt.animatedProperties = {}; for ( p in prop ) { - var name = jQuery.camelCase( p ); - + + // property name normalization + name = jQuery.camelCase( p ); if ( p !== name ) { prop[ name ] = prop[ p ]; delete prop[ p ]; - p = name; - } - - if ( prop[p] === "hide" && hidden || prop[p] === "show" && !hidden ) { - return opt.complete.call(this); - } - - if ( isElement && ( p === "height" || p === "width" ) ) { + } + + val = prop[ name ]; + + // easing resolution: per property > opt.specialEasing > opt.easing > 'swing' (default) + if ( jQuery.isArray( val ) ) { + opt.animatedProperties[ name ] = val[ 1 ]; + val = prop[ name ] = val[ 0 ]; + } else { + opt.animatedProperties[ name ] = opt.specialEasing && opt.specialEasing[ name ] || opt.easing || 'swing'; + } + + if ( val === "hide" && hidden || val === "show" && !hidden ) { + return opt.complete.call( this ); + } + + if ( isElement && ( name === "height" || name === "width" ) ) { // Make sure that nothing sneaks out // Record all 3 overflow attributes because IE does not // change the overflow attribute when overflowX and @@ -7614,66 +8395,60 @@ opt.overflow = [ this.style.overflow, this.style.overflowX, this.style.overflowY ]; // Set display property to inline-block for height/width - // animations on inline elements that are having width/height - // animated + // animations on inline elements that are having width/height animated if ( jQuery.css( this, "display" ) === "inline" && jQuery.css( this, "float" ) === "none" ) { - if ( !jQuery.support.inlineBlockNeedsLayout ) { + + // inline-level elements accept inline-block; + // block-level elements need to be inline with layout + if ( !jQuery.support.inlineBlockNeedsLayout || defaultDisplay( this.nodeName ) === "inline" ) { this.style.display = "inline-block"; } else { - var display = defaultDisplay(this.nodeName); - - // inline-level elements accept inline-block; - // block-level elements need to be inline with layout - if ( display === "inline" ) { - this.style.display = "inline-block"; - - } else { - this.style.display = "inline"; - this.style.zoom = 1; - } + this.style.zoom = 1; } } } - - if ( jQuery.isArray( prop[p] ) ) { - // Create (if needed) and add to specialEasing - (opt.specialEasing = opt.specialEasing || {})[p] = prop[p][1]; - prop[p] = prop[p][0]; - } } if ( opt.overflow != null ) { this.style.overflow = "hidden"; } - opt.curAnim = jQuery.extend({}, prop); - - jQuery.each( prop, function( name, val ) { - var e = new jQuery.fx( self, opt, name ); - - if ( rfxtypes.test(val) ) { - e[ val === "toggle" ? hidden ? "show" : "hide" : val ]( prop ); + for ( p in prop ) { + e = new jQuery.fx( this, opt, p ); + val = prop[ p ]; + + if ( rfxtypes.test( val ) ) { + + // Tracks whether to show or hide based on private + // data attached to the element + method = jQuery._data( this, "toggle" + p ) || ( val === "toggle" ? hidden ? "show" : "hide" : 0 ); + if ( method ) { + jQuery._data( this, "toggle" + p, method === "show" ? "hide" : "show" ); + e[ method ](); + } else { + e[ val ](); + } } else { - var parts = rfxnum.exec(val), - start = e.cur(); + parts = rfxnum.exec( val ); + start = e.cur(); if ( parts ) { - var end = parseFloat( parts[2] ), - unit = parts[3] || ( jQuery.cssNumber[ name ] ? "" : "px" ); + end = parseFloat( parts[2] ); + unit = parts[3] || ( jQuery.cssNumber[ p ] ? "" : "px" ); // We need to compute starting value if ( unit !== "px" ) { - jQuery.style( self, name, (end || 1) + unit); - start = ((end || 1) / e.cur()) * start; - jQuery.style( self, name, start + unit); + jQuery.style( this, p, (end || 1) + unit); + start = ( (end || 1) / e.cur() ) * start; + jQuery.style( this, p, start + unit); } // If a +=/-= token was provided, we're doing a relative animation if ( parts[1] ) { - end = ((parts[1] === "-=" ? -1 : 1) * end) + start; + end = ( (parts[ 1 ] === "-=" ? -1 : 1) * end ) + start; } e.custom( start, end, unit ); @@ -7682,48 +8457,94 @@ e.custom( start, val, "" ); } } - }); + } // For JS strict compliance return true; + } + + return optall.queue === false ? + this.each( doAnimation ) : + this.queue( optall.queue, doAnimation ); + }, + + stop: function( type, clearQueue, gotoEnd ) { + if ( typeof type !== "string" ) { + gotoEnd = clearQueue; + clearQueue = type; + type = undefined; + } + if ( clearQueue && type !== false ) { + this.queue( type || "fx", [] ); + } + + return this.each(function() { + var index, + hadTimers = false, + timers = jQuery.timers, + data = jQuery._data( this ); + + // clear marker counters if we know they won't be + if ( !gotoEnd ) { + jQuery._unmark( true, this ); + } + + function stopQueue( elem, data, index ) { + var hooks = data[ index ]; + jQuery.removeData( elem, index, true ); + hooks.stop( gotoEnd ); + } + + if ( type == null ) { + for ( index in data ) { + if ( data[ index ] && data[ index ].stop && index.indexOf(".run") === index.length - 4 ) { + stopQueue( this, data, index ); + } + } + } else if ( data[ index = type + ".run" ] && data[ index ].stop ){ + stopQueue( this, data, index ); + } + + for ( index = timers.length; index--; ) { + if ( timers[ index ].elem === this && (type == null || timers[ index ].queue === type) ) { + if ( gotoEnd ) { + + // force the next step to be the last + timers[ index ]( true ); + } else { + timers[ index ].saveState(); + } + hadTimers = true; + timers.splice( index, 1 ); + } + } + + // start the next in the queue if the last step wasn't forced + // timers currently will call their complete callbacks, which will dequeue + // but only if they were gotoEnd + if ( !( gotoEnd && hadTimers ) ) { + jQuery.dequeue( this, type ); + } }); - }, - - stop: function( clearQueue, gotoEnd ) { - var timers = jQuery.timers; - - if ( clearQueue ) { - this.queue([]); - } - - this.each(function() { - // go in reverse order so anything added to the queue during the loop is ignored - for ( var i = timers.length - 1; i >= 0; i-- ) { - if ( timers[i].elem === this ) { - if (gotoEnd) { - // force the next step to be the last - timers[i](true); - } - - timers.splice(i, 1); - } - } - }); - - // start the next in the queue if the last step wasn't forced - if ( !gotoEnd ) { - this.dequeue(); - } - - return this; } }); +// Animations created synchronously will run synchronously +function createFxNow() { + setTimeout( clearFxNow, 0 ); + return ( fxNow = jQuery.now() ); +} + +function clearFxNow() { + fxNow = undefined; +} + +// Generate parameters to create a standard animation function genFx( type, num ) { var obj = {}; - jQuery.each( fxAttrs.concat.apply([], fxAttrs.slice(0,num)), function() { + jQuery.each( fxAttrs.concat.apply([], fxAttrs.slice( 0, num )), function() { obj[ this ] = type; }); @@ -7732,9 +8553,9 @@ // Generate shortcuts for custom animations jQuery.each({ - slideDown: genFx("show", 1), - slideUp: genFx("hide", 1), - slideToggle: genFx("toggle", 1), + slideDown: genFx( "show", 1 ), + slideUp: genFx( "hide", 1 ), + slideToggle: genFx( "toggle", 1 ), fadeIn: { opacity: "show" }, fadeOut: { opacity: "hide" }, fadeToggle: { opacity: "toggle" } @@ -7746,25 +8567,34 @@ jQuery.extend({ speed: function( speed, easing, fn ) { - var opt = speed && typeof speed === "object" ? jQuery.extend({}, speed) : { + var opt = speed && typeof speed === "object" ? jQuery.extend( {}, speed ) : { complete: fn || !fn && easing || jQuery.isFunction( speed ) && speed, duration: speed, - easing: fn && easing || easing && !jQuery.isFunction(easing) && easing + easing: fn && easing || easing && !jQuery.isFunction( easing ) && easing }; opt.duration = jQuery.fx.off ? 0 : typeof opt.duration === "number" ? opt.duration : - opt.duration in jQuery.fx.speeds ? jQuery.fx.speeds[opt.duration] : jQuery.fx.speeds._default; + opt.duration in jQuery.fx.speeds ? jQuery.fx.speeds[ opt.duration ] : jQuery.fx.speeds._default; + + // normalize opt.queue - true/undefined/null -> "fx" + if ( opt.queue == null || opt.queue === true ) { + opt.queue = "fx"; + } // Queueing opt.old = opt.complete; - opt.complete = function() { - if ( opt.queue !== false ) { - jQuery(this).dequeue(); - } + + opt.complete = function( noUnmark ) { if ( jQuery.isFunction( opt.old ) ) { opt.old.call( this ); } + + if ( opt.queue ) { + jQuery.dequeue( this, opt.queue ); + } else if ( noUnmark !== false ) { + jQuery._unmark( this ); + } }; return opt; @@ -7775,7 +8605,7 @@ return firstNum + diff * p; }, swing: function( p, n, firstNum, diff ) { - return ((-Math.cos(p*Math.PI)/2) + 0.5) * diff + firstNum; + return ( ( -Math.cos( p*Math.PI ) / 2 ) + 0.5 ) * diff + firstNum; } }, @@ -7786,9 +8616,7 @@ this.elem = elem; this.prop = prop; - if ( !options.orig ) { - options.orig = {}; - } + options.orig = options.orig || {}; } }); @@ -7800,12 +8628,12 @@ this.options.step.call( this.elem, this.now, this ); } - (jQuery.fx.step[this.prop] || jQuery.fx.step._default)( this ); + ( jQuery.fx.step[ this.prop ] || jQuery.fx.step._default )( this ); }, // Get the current size cur: function() { - if ( this.elem[this.prop] != null && (!this.elem.style || this.elem.style[this.prop] == null) ) { + if ( this.elem[ this.prop ] != null && (!this.elem.style || this.elem.style[ this.prop ] == null) ) { return this.elem[ this.prop ]; } @@ -7822,34 +8650,45 @@ var self = this, fx = jQuery.fx; - this.startTime = jQuery.now(); - this.start = from; + this.startTime = fxNow || createFxNow(); this.end = to; + this.now = this.start = from; + this.pos = this.state = 0; this.unit = unit || this.unit || ( jQuery.cssNumber[ this.prop ] ? "" : "px" ); - this.now = this.start; - this.pos = this.state = 0; function t( gotoEnd ) { - return self.step(gotoEnd); - } - + return self.step( gotoEnd ); + } + + t.queue = this.options.queue; t.elem = this.elem; + t.saveState = function() { + if ( self.options.hide && jQuery._data( self.elem, "fxshow" + self.prop ) === undefined ) { + jQuery._data( self.elem, "fxshow" + self.prop, self.start ); + } + }; if ( t() && jQuery.timers.push(t) && !timerId ) { - timerId = setInterval(fx.tick, fx.interval); + timerId = setInterval( fx.tick, fx.interval ); } }, // Simple 'show' function show: function() { + var dataShow = jQuery._data( this.elem, "fxshow" + this.prop ); + // Remember where we started, so that we can go back to it later - this.options.orig[this.prop] = jQuery.style( this.elem, this.prop ); + this.options.orig[ this.prop ] = dataShow || jQuery.style( this.elem, this.prop ); this.options.show = true; // Begin the animation - // Make sure that we start at a small width/height to avoid any - // flash of content - this.custom(this.prop === "width" || this.prop === "height" ? 1 : 0, this.cur()); + // Make sure that we start at a small width/height to avoid any flash of content + if ( dataShow !== undefined ) { + // This show is picking up where a previous hide or show left off + this.custom( this.cur(), dataShow ); + } else { + this.custom( this.prop === "width" || this.prop === "height" ? 1 : 0, this.cur() ); + } // Start by showing the element jQuery( this.elem ).show(); @@ -7858,69 +8697,84 @@ // Simple 'hide' function hide: function() { // Remember where we started, so that we can go back to it later - this.options.orig[this.prop] = jQuery.style( this.elem, this.prop ); + this.options.orig[ this.prop ] = jQuery._data( this.elem, "fxshow" + this.prop ) || jQuery.style( this.elem, this.prop ); this.options.hide = true; // Begin the animation - this.custom(this.cur(), 0); + this.custom( this.cur(), 0 ); }, // Each step of an animation step: function( gotoEnd ) { - var t = jQuery.now(), done = true; - - if ( gotoEnd || t >= this.options.duration + this.startTime ) { + var p, n, complete, + t = fxNow || createFxNow(), + done = true, + elem = this.elem, + options = this.options; + + if ( gotoEnd || t >= options.duration + this.startTime ) { this.now = this.end; this.pos = this.state = 1; this.update(); - this.options.curAnim[ this.prop ] = true; - - for ( var i in this.options.curAnim ) { - if ( this.options.curAnim[i] !== true ) { + options.animatedProperties[ this.prop ] = true; + + for ( p in options.animatedProperties ) { + if ( options.animatedProperties[ p ] !== true ) { done = false; } } if ( done ) { // Reset the overflow - if ( this.options.overflow != null && !jQuery.support.shrinkWrapBlocks ) { - var elem = this.elem, - options = this.options; - - jQuery.each( [ "", "X", "Y" ], function (index, value) { - elem.style[ "overflow" + value ] = options.overflow[index]; - } ); + if ( options.overflow != null && !jQuery.support.shrinkWrapBlocks ) { + + jQuery.each( [ "", "X", "Y" ], function( index, value ) { + elem.style[ "overflow" + value ] = options.overflow[ index ]; + }); } // Hide the element if the "hide" operation was done - if ( this.options.hide ) { - jQuery(this.elem).hide(); + if ( options.hide ) { + jQuery( elem ).hide(); } // Reset the properties, if the item has been hidden or shown - if ( this.options.hide || this.options.show ) { - for ( var p in this.options.curAnim ) { - jQuery.style( this.elem, p, this.options.orig[p] ); + if ( options.hide || options.show ) { + for ( p in options.animatedProperties ) { + jQuery.style( elem, p, options.orig[ p ] ); + jQuery.removeData( elem, "fxshow" + p, true ); + // Toggle data is no longer needed + jQuery.removeData( elem, "toggle" + p, true ); } } // Execute the complete function - this.options.complete.call( this.elem ); + // in the event that the complete function throws an exception + // we must ensure it won't be called twice. #5684 + + complete = options.complete; + if ( complete ) { + + options.complete = false; + complete.call( elem ); + } } return false; } else { - var n = t - this.startTime; - this.state = n / this.options.duration; - - // Perform the easing function, defaults to swing - var specialEasing = this.options.specialEasing && this.options.specialEasing[this.prop]; - var defaultEasing = this.options.easing || (jQuery.easing.swing ? "swing" : "linear"); - this.pos = jQuery.easing[specialEasing || defaultEasing](this.state, n, 0, 1, this.options.duration); - this.now = this.start + ((this.end - this.start) * this.pos); - + // classical easing cannot be used with an Infinity duration + if ( options.duration == Infinity ) { + this.now = t; + } else { + n = t - this.startTime; + this.state = n / options.duration; + + // Perform the easing function, defaults to swing + this.pos = jQuery.easing[ options.animatedProperties[this.prop] ]( this.state, n, 0, 1, options.duration ); + this.now = this.start + ( (this.end - this.start) * this.pos ); + } // Perform the next step of the animation this.update(); } @@ -7931,11 +8785,15 @@ jQuery.extend( jQuery.fx, { tick: function() { - var timers = jQuery.timers; - - for ( var i = 0; i < timers.length; i++ ) { - if ( !timers[i]() ) { - timers.splice(i--, 1); + var timer, + timers = jQuery.timers, + i = 0; + + for ( ; i < timers.length; i++ ) { + timer = timers[ i ]; + // Checks the timer has not already been removed + if ( !timer() && timers[ i ] === timer ) { + timers.splice( i--, 1 ); } } @@ -7965,7 +8823,7 @@ _default: function( fx ) { if ( fx.elem.style && fx.elem.style[ fx.prop ] != null ) { - fx.elem.style[ fx.prop ] = (fx.prop === "width" || fx.prop === "height" ? Math.max(0, fx.now) : fx.now) + fx.unit; + fx.elem.style[ fx.prop ] = fx.now + fx.unit; } else { fx.elem[ fx.prop ] = fx.now; } @@ -7973,6 +8831,14 @@ } }); +// Adds width/height step functions +// Do not set anything below 0 +jQuery.each([ "width", "height" ], function( i, prop ) { + jQuery.fx.step[ prop ] = function( fx ) { + jQuery.style( fx.elem, prop, Math.max(0, fx.now) + fx.unit ); + }; +}); + if ( jQuery.expr && jQuery.expr.filters ) { jQuery.expr.filters.animated = function( elem ) { return jQuery.grep(jQuery.timers, function( fn ) { @@ -7981,17 +8847,45 @@ }; } +// Try to restore the default display value of an element function defaultDisplay( nodeName ) { + if ( !elemdisplay[ nodeName ] ) { - var elem = jQuery("<" + nodeName + ">").appendTo("body"), - display = elem.css("display"); - + + var body = document.body, + elem = jQuery( "<" + nodeName + ">" ).appendTo( body ), + display = elem.css( "display" ); elem.remove(); + // If the simple way fails, + // get element's real default display by attaching it to a temp iframe if ( display === "none" || display === "" ) { - display = "block"; - } - + // No iframe to use yet, so create it + if ( !iframe ) { + iframe = document.createElement( "iframe" ); + iframe.frameBorder = iframe.width = iframe.height = 0; + } + + body.appendChild( iframe ); + + // Create a cacheable copy of the iframe document on first call. + // IE and Opera will allow us to reuse the iframeDoc without re-writing the fake HTML + // document to it; WebKit & Firefox won't allow reusing the iframe document. + if ( !iframeDoc || !iframe.createElement ) { + iframeDoc = ( iframe.contentWindow || iframe.contentDocument ).document; + iframeDoc.write( ( document.compatMode === "CSS1Compat" ? "<!doctype html>" : "" ) + "<html><body>" ); + iframeDoc.close(); + } + + elem = iframeDoc.createElement( nodeName ); + + iframeDoc.body.appendChild( elem ); + + display = jQuery.css( elem, "display" ); + body.removeChild( iframe ); + } + + // Store the correct default display elemdisplay[ nodeName ] = display; } @@ -8064,8 +8958,6 @@ return jQuery.offset.bodyOffset( elem ); } - jQuery.offset.initialize(); - var computedStyle, offsetParent = elem.offsetParent, prevOffsetParent = elem, @@ -8078,7 +8970,7 @@ left = elem.offsetLeft; while ( (elem = elem.parentNode) && elem !== body && elem !== docElem ) { - if ( jQuery.offset.supportsFixedPosition && prevComputedStyle.position === "fixed" ) { + if ( jQuery.support.fixedPosition && prevComputedStyle.position === "fixed" ) { break; } @@ -8090,7 +8982,7 @@ top += elem.offsetTop; left += elem.offsetLeft; - if ( jQuery.offset.doesNotAddBorder && !(jQuery.offset.doesAddBorderForTableAndCells && rtable.test(elem.nodeName)) ) { + if ( jQuery.support.doesNotAddBorder && !(jQuery.support.doesAddBorderForTableAndCells && rtable.test(elem.nodeName)) ) { top += parseFloat( computedStyle.borderTopWidth ) || 0; left += parseFloat( computedStyle.borderLeftWidth ) || 0; } @@ -8099,7 +8991,7 @@ offsetParent = elem.offsetParent; } - if ( jQuery.offset.subtractsBorderForOverflowNotVisible && computedStyle.overflow !== "visible" ) { + if ( jQuery.support.subtractsBorderForOverflowNotVisible && computedStyle.overflow !== "visible" ) { top += parseFloat( computedStyle.borderTopWidth ) || 0; left += parseFloat( computedStyle.borderLeftWidth ) || 0; } @@ -8112,7 +9004,7 @@ left += body.offsetLeft; } - if ( jQuery.offset.supportsFixedPosition && prevComputedStyle.position === "fixed" ) { + if ( jQuery.support.fixedPosition && prevComputedStyle.position === "fixed" ) { top += Math.max( docElem.scrollTop, body.scrollTop ); left += Math.max( docElem.scrollLeft, body.scrollLeft ); } @@ -8122,46 +9014,12 @@ } jQuery.offset = { - initialize: function() { - var body = document.body, container = document.createElement("div"), innerDiv, checkDiv, table, td, bodyMarginTop = parseFloat( jQuery.css(body, "marginTop") ) || 0, - html = "<div style='position:absolute;top:0;left:0;margin:0;border:5px solid #000;padding:0;width:1px;height:1px;'><div></div></div><table style='position:absolute;top:0;left:0;margin:0;border:5px solid #000;padding:0;width:1px;height:1px;' cellpadding='0' cellspacing='0'><tr><td></td></tr></table>"; - - jQuery.extend( container.style, { position: "absolute", top: 0, left: 0, margin: 0, border: 0, width: "1px", height: "1px", visibility: "hidden" } ); - - container.innerHTML = html; - body.insertBefore( container, body.firstChild ); - innerDiv = container.firstChild; - checkDiv = innerDiv.firstChild; - td = innerDiv.nextSibling.firstChild.firstChild; - - this.doesNotAddBorder = (checkDiv.offsetTop !== 5); - this.doesAddBorderForTableAndCells = (td.offsetTop === 5); - - checkDiv.style.position = "fixed"; - checkDiv.style.top = "20px"; - - // safari subtracts parent border width here which is 5px - this.supportsFixedPosition = (checkDiv.offsetTop === 20 || checkDiv.offsetTop === 15); - checkDiv.style.position = checkDiv.style.top = ""; - - innerDiv.style.overflow = "hidden"; - innerDiv.style.position = "relative"; - - this.subtractsBorderForOverflowNotVisible = (checkDiv.offsetTop === -5); - - this.doesNotIncludeMarginInBodyOffset = (body.offsetTop !== bodyMarginTop); - - body.removeChild( container ); - jQuery.offset.initialize = jQuery.noop; - }, bodyOffset: function( body ) { var top = body.offsetTop, left = body.offsetLeft; - jQuery.offset.initialize(); - - if ( jQuery.offset.doesNotIncludeMarginInBodyOffset ) { + if ( jQuery.support.doesNotIncludeMarginInBodyOffset ) { top += parseFloat( jQuery.css(body, "marginTop") ) || 0; left += parseFloat( jQuery.css(body, "marginLeft") ) || 0; } @@ -8181,26 +9039,28 @@ curOffset = curElem.offset(), curCSSTop = jQuery.css( elem, "top" ), curCSSLeft = jQuery.css( elem, "left" ), - calculatePosition = (position === "absolute" || position === "fixed") && jQuery.inArray('auto', [curCSSTop, curCSSLeft]) > -1, + calculatePosition = ( position === "absolute" || position === "fixed" ) && jQuery.inArray("auto", [curCSSTop, curCSSLeft]) > -1, props = {}, curPosition = {}, curTop, curLeft; // need to be able to calculate position if either top or left is auto and position is either absolute or fixed if ( calculatePosition ) { curPosition = curElem.position(); - } - - curTop = calculatePosition ? curPosition.top : parseInt( curCSSTop, 10 ) || 0; - curLeft = calculatePosition ? curPosition.left : parseInt( curCSSLeft, 10 ) || 0; + curTop = curPosition.top; + curLeft = curPosition.left; + } else { + curTop = parseFloat( curCSSTop ) || 0; + curLeft = parseFloat( curCSSLeft ) || 0; + } if ( jQuery.isFunction( options ) ) { options = options.call( elem, i, curOffset ); } - if (options.top != null) { - props.top = (options.top - curOffset.top) + curTop; - } - if (options.left != null) { - props.left = (options.left - curOffset.left) + curLeft; + if ( options.top != null ) { + props.top = ( options.top - curOffset.top ) + curTop; + } + if ( options.left != null ) { + props.left = ( options.left - curOffset.left ) + curLeft; } if ( "using" in options ) { @@ -8213,6 +9073,7 @@ jQuery.fn.extend({ + position: function() { if ( !this[0] ) { return null; @@ -8260,29 +9121,16 @@ jQuery.each( ["Left", "Top"], function( i, name ) { var method = "scroll" + name; - jQuery.fn[ method ] = function(val) { - var elem = this[0], win; - - if ( !elem ) { - return null; - } - - if ( val !== undefined ) { - // Set the scroll offset - return this.each(function() { - win = getWindow( this ); - - if ( win ) { - win.scrollTo( - !i ? val : jQuery(win).scrollLeft(), - i ? val : jQuery(win).scrollTop() - ); - - } else { - this[ method ] = val; - } - }); - } else { + jQuery.fn[ method ] = function( val ) { + var elem, win; + + if ( val === undefined ) { + elem = this[ 0 ]; + + if ( !elem ) { + return null; + } + win = getWindow( elem ); // Return the scroll offset @@ -8291,6 +9139,21 @@ win.document.body[ method ] : elem[ method ]; } + + // Set the scroll offset + return this.each(function() { + win = getWindow( this ); + + if ( win ) { + win.scrollTo( + !i ? val : jQuery( win ).scrollLeft(), + i ? val : jQuery( win ).scrollTop() + ); + + } else { + this[ method ] = val; + } + }); }; }); @@ -8305,22 +9168,28 @@ -// Create innerHeight, innerWidth, outerHeight and outerWidth methods +// Create width, height, innerHeight, innerWidth, outerHeight and outerWidth methods jQuery.each([ "Height", "Width" ], function( i, name ) { var type = name.toLowerCase(); // innerHeight and innerWidth - jQuery.fn["inner" + name] = function() { - return this[0] ? - parseFloat( jQuery.css( this[0], type, "padding" ) ) : + jQuery.fn[ "inner" + name ] = function() { + var elem = this[0]; + return elem ? + elem.style ? + parseFloat( jQuery.css( elem, type, "padding" ) ) : + this[ type ]() : null; }; // outerHeight and outerWidth - jQuery.fn["outer" + name] = function( margin ) { - return this[0] ? - parseFloat( jQuery.css( this[0], type, margin ? "margin" : "border" ) ) : + jQuery.fn[ "outer" + name ] = function( margin ) { + var elem = this[0]; + return elem ? + elem.style ? + parseFloat( jQuery.css( elem, type, margin ? "margin" : "border" ) ) : + this[ type ]() : null; }; @@ -8341,9 +9210,10 @@ if ( jQuery.isWindow( elem ) ) { // Everyone else use document.documentElement or document.body depending on Quirks vs Standards mode // 3rd condition allows Nokia support, as it supports the docElem prop but not CSS1Compat - var docElemProp = elem.document.documentElement[ "client" + name ]; + var docElemProp = elem.document.documentElement[ "client" + name ], + body = elem.document.body; return elem.document.compatMode === "CSS1Compat" && docElemProp || - elem.document.body[ "client" + name ] || docElemProp; + body && body[ "client" + name ] || docElemProp; // Get document width or height } else if ( elem.nodeType === 9 ) { @@ -8359,7 +9229,7 @@ var orig = jQuery.css( elem, type ), ret = parseFloat( orig ); - return jQuery.isNaN( ret ) ? orig : ret; + return jQuery.isNumeric( ret ) ? ret : orig; // Set the width or height on the element (default to pixels if value is unitless) } else { @@ -8370,5 +9240,27 @@ }); + + +// Expose jQuery to the global object window.jQuery = window.$ = jQuery; -})(window); + +// Expose jQuery as an AMD module, but only for AMD loaders that +// understand the issues with loading multiple versions of jQuery +// in a page that all might call define(). The loader will indicate +// they have special allowances for multiple jQuery versions by +// specifying define.amd.jQuery = true. Register as a named module, +// since jQuery can be concatenated with other files that may use define, +// but not use a proper concatenation script that understands anonymous +// AMD modules. A named AMD is safest and most robust way to register. +// Lowercase jquery is used because AMD module names are derived from +// file names, and jQuery is normally delivered in a lowercase file name. +// Do this after creating the global so that if an AMD module wants to call +// noConflict to hide this version of jQuery, it will work. +if ( typeof define === "function" && define.amd && define.amd.jQuery ) { + define( "jquery", [], function () { return jQuery; } ); +} + + + +})( window ); diff -r eb5c80ae41612c9bbe27665f4749a0ba22c794e3 -r 1631db9677923b74cad7f595512ca8ccd2791df0 static/scripts/packed/jquery.js --- a/static/scripts/packed/jquery.js +++ b/static/scripts/packed/jquery.js @@ -1,5 +1,5 @@ /* - * jQuery JavaScript Library v1.5.2 + * jQuery JavaScript Library v1.7.1 * http://jquery.com/ * * Copyright 2011, John Resig @@ -11,13 +11,13 @@ * Copyright 2011, The Dojo Foundation * Released under the MIT, BSD, and GPL Licenses. * - * Date: Thu Mar 31 15:28:23 2011 -0400 + * Date: Mon Nov 21 21:11:03 2011 -0500 */ -(function(a0,I){var am=a0.document;var b=(function(){var bo=function(bI,bJ){return new bo.fn.init(bI,bJ,bm)},bD=a0.jQuery,bq=a0.$,bm,bH=/^(?:[^<]*(<[\w\W]+>)[^>]*$|#([\w\-]+)$)/,bw=/\S/,bs=/^\s+/,bn=/\s+$/,br=/\d/,bk=/^<(\w+)\s*\/?>(?:<\/\1>)?$/,bx=/^[\],:{}\s]*$/,bF=/\\(?:["\\\/bfnrt]|u[0-9a-fA-F]{4})/g,bz=/"[^"\\\n\r]*"|true|false|null|-?\d+(?:\.\d*)?(?:[eE][+\-]?\d+)?/g,bt=/(?:^|:|,)(?:\s*\[)+/g,bi=/(webkit)[ \/]([\w.]+)/,bB=/(opera)(?:.*version)?[ \/]([\w.]+)/,bA=/(msie) ([\w.]+)/,bC=/(mozilla)(?:.*? rv:([\w.]+))?/,bG=navigator.userAgent,bE,bl,e,bv=Object.prototype.toString,bp=Object.prototype.hasOwnProperty,bj=Array.prototype.push,bu=Array.prototype.slice,by=String.prototype.trim,bf=Array.prototype.indexOf,bh={};bo.fn=bo.prototype={constructor:bo,init:function(bI,bM,bL){var bK,bN,bJ,bO;if(!bI){return this}if(bI.nodeType){this.context=this[0]=bI;this.length=1;return this}if(bI==="body"&&!bM&&am.body){this.context=am;this[0]=am.body;this.selector="body";this.length=1;return this}if(typeof bI==="string"){bK=bH.exec(bI);if(bK&&(bK[1]||!bM)){if(bK[1]){bM=bM instanceof bo?bM[0]:bM;bO=(bM?bM.ownerDocument||bM:am);bJ=bk.exec(bI);if(bJ){if(bo.isPlainObject(bM)){bI=[am.createElement(bJ[1])];bo.fn.attr.call(bI,bM,true)}else{bI=[bO.createElement(bJ[1])]}}else{bJ=bo.buildFragment([bK[1]],[bO]);bI=(bJ.cacheable?bo.clone(bJ.fragment):bJ.fragment).childNodes}return bo.merge(this,bI)}else{bN=am.getElementById(bK[2]);if(bN&&bN.parentNode){if(bN.id!==bK[2]){return bL.find(bI)}this.length=1;this[0]=bN}this.context=am;this.selector=bI;return this}}else{if(!bM||bM.jquery){return(bM||bL).find(bI)}else{return this.constructor(bM).find(bI)}}}else{if(bo.isFunction(bI)){return bL.ready(bI)}}if(bI.selector!==I){this.selector=bI.selector;this.context=bI.context}return bo.makeArray(bI,this)},selector:"",jquery:"1.5.2",length:0,size:function(){return this.length},toArray:function(){return bu.call(this,0)},get:function(bI){return bI==null?this.toArray():(bI<0?this[this.length+bI]:this[bI])},pushStack:function(bJ,bL,bI){var bK=this.constructor();if(bo.isArray(bJ)){bj.apply(bK,bJ)}else{bo.merge(bK,bJ)}bK.prevObject=this;bK.context=this.context;if(bL==="find"){bK.selector=this.selector+(this.selector?" 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af=this.document.createElement("canvas");if(window.G_vmlCanvasManager){G_vmlCanvasManager.initElement(af)}af.manager=this;return af}});var n={};var l=function(af,ag){n[af.attr("id")]=ag};var m=function(af,ah,aj,ai){aj=".group";var ag={};n[af.attr("id")]=ai;af.bind("drag",{handle:"."+ah,relative:true},function(ar,at){var aq=$(this);var aw=$(this).parent(),an=aw.children(),ap=n[$(this).attr("id")],am,al,au,ak,ao;al=$(this).parents(aj);if(al.length!==0){au=al.position().top;ak=au+al.outerHeight();if(at.offsetY<au){$(this).insertBefore(al);var av=n[al.attr("id")];av.remove_drawable(ap);av.container.add_drawable_before(ap,av);return}else{if(at.offsetY>ak){$(this).insertAfter(al);var 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Please check your datatypes_conf.xml file.",D="No data for this chrom/contig.",t="Currently indexing... please wait",w="Tool cannot be rerun: ",a="Loading data...",Y="Ready for display",R=10,H=20;function Z(ag,af){if(!af){af=0}var ah=Math.pow(10,af);return Math.round(ag*ah)/ah}var c=function(af){this.num_elements=af;this.clear()};p(c.prototype,{get:function(ag){var af=this.key_ary.indexOf(ag);if(af!==-1){if(this.obj_cache[ag].stale){this.key_ary.splice(af,1);delete this.obj_cache[ag]}else{this.move_key_to_end(ag,af)}}return this.obj_cache[ag]},set:function(ag,ah){if(!this.obj_cache[ag]){if(this.key_ary.length>=this.num_elements){var af=this.key_ary.shift();delete this.obj_cache[af]}this.key_ary.push(ag)}this.obj_cache[ag]=ah;return ah},move_key_to_end:function(ag,af){this.key_ary.splice(af,1);this.key_ary.push(ag)},clear:function(){this.obj_cache={};this.key_ary=[]},size:function(){return this.key_ary.length}});var 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ai=function(){hide_modal();$(window).unbind("keypress.check_enter_esc")},af=function(){ag.config.update_from_form($(".dialog-box"));hide_modal();$(window).unbind("keypress.check_enter_esc")},ah=function(aj){if((aj.keyCode||aj.which)===27){ai()}else{if((aj.keyCode||aj.which)===13){af()}}};$(window).bind("keypress.check_enter_esc",ah);show_modal("Configure",ag.config.build_form(),{Cancel:ai,OK:af})}},{name:"remove_icon",title:"Remove",css_class:"remove-icon",on_click_fn:function(af){$(".tipsy").remove();af.remove()}}];p(q.prototype,{init:function(){},can_draw:function(){if(this.enabled&&this.content_visible){return true}return false},request_draw:function(){},_draw:function(){},to_dict:function(){},from_dict:function(af){},update_icons:function(){},set_name:function(af){this.old_name=this.name;this.name=af;this.name_div.text(this.name)},revert_name:function(){this.name=this.old_name;this.name_div.text(this.name)},remove:function(){this.container.remove_drawable(this);this.container_div.hide(0,function(){$(this).remove();view.update_intro_div();view.has_changes=true})},build_container_div:function(){},build_header_div:function(){},add_action_icon:function(ag,ak,aj,ai,af){var ah=this;this.action_icons[ag]=$("<a/>").attr("href","javascript:void(0);").attr("title",ak).addClass("icon-button").addClass(aj).tipsy({gravity:"s"}).click(function(){ai(ah)}).appendTo(this.icons_div)},build_action_icons:function(af){var ah;for(var ag=0;ag<af.length;ag++){ah=af[ag];this.add_action_icon(ah.name,ah.title,ah.css_class,ah.on_click_fn,ah.prepend)}},update_icons:function(){},hide_contents:function(){},show_contents:function(){}});var x=function(aj,ai,ag,af,ah,ak){q.call(this,ai,ag,af,ah,ak);this.obj_type=aj;this.drawables=[]};p(x.prototype,q.prototype,{init:function(){for(var af=0;af<this.drawables.length;af++){this.drawables[af].init()}},_draw:function(){for(var af=0;af<this.drawables.length;af++){this.drawables[af]._draw()}},to_dict:function(){var ag=[];for(var af=0;af<this.drawables.length;af++){ag.push(this.drawables[af].to_dict())}return{name:this.name,prefs:this.prefs,obj_type:this.obj_type,drawables:ag}},from_dict:function(al,af){var ak=new this.constructor(al.name,view,af,al.prefs,view.viewport_container,view);var ag,aj,ai;for(var ah=0;ah<al.drawables.length;ah++){ag=al.drawables[ah];aj=ag.obj_type;if(!aj){aj=ag.track_type}ai=addable_objects[aj].prototype.from_dict(ag,ak);ak.add_drawable(ai)}return ak},add_drawable:function(af){this.drawables.push(af);af.container=this},add_drawable_before:function(ah,af){var ag=this.drawables.indexOf(af);if(ag!=-1){this.drawables.splice(ag,0,ah);return true}return false},remove_drawable:function(ag){var af=this.drawables.indexOf(ag);if(af!=-1){this.drawables.splice(af,1);ag.container=null;return true}return false},move_drawable:function(ag,ah){var af=this.drawables.indexOf(ag);if(af!=-1){this.drawables.splice(af,1);this.drawables.splice(ah,0,ag);return true}return false}});var P=function(ai,ag,af,ah){x.call(this,"DrawableGroup",ai,ag,af,ah,"group-handle");this.content_div=$("<div/>").addClass("content-div").attr("id","group_"+this.id+"_content_div").appendTo(this.container_div);l(this.container_div,this);l(this.content_div,this);m(this.container_div,this.drag_handle_class,".group",this)};p(P.prototype,q.prototype,x.prototype,{action_icons_def:[{name:"composite_icon",title:"Show composite track",css_class:"layers-stack",on_click_fn:function(af){af.show_composite_track()}}].concat(q.prototype.action_icons_def),build_container_div:function(){return $("<div/>").addClass("group").attr("id","group_"+this.id).appendTo(this.container.content_div)},build_header_div:function(){var af=$("<div/>").addClass("track-header");af.append($("<div/>").addClass(this.drag_handle_class));this.name_div=$("<div/>").addClass("track-name").text(this.name).appendTo(af);return af},hide_contents:function(){this.content_div.hide()},show_contents:function(){this.content_div.show();this.request_draw()},update_icons:function(){var af=true,ah=this.drawables[0].get_type();for(var ag=0;ag<this.drawables.length;ag++){if(this.drawables[ag].get_type()!==ah){af=false;break}}if(af){this.action_icons.composite_icon.show()}else{this.action_icons.composite_icon.hide();$(".tipsy").remove()}},show_composite_track:function(){var af=new h("Composite Track",this.view,this,this.drawables);this.add_drawable(af);af.request_draw()},add_drawable:function(af){x.prototype.add_drawable.call(this,af);this.update_icons()},remove_drawable:function(af){x.prototype.remove_drawable.call(this,af);this.update_icons()},from_dict:function(ai,af){var ah=x.prototype.from_dict.call(this,ai,af);for(var ag=0;ag<ah.drawables.length;ag++){ah.content_div.append(ah.drawables[ag].container_div)}return ah}});var ac=function(af,ai,ah,ag){x.call(this,"View");this.container=af;this.chrom=null;this.vis_id=ah;this.dbkey=ag;this.title=ai;this.label_tracks=[];this.tracks_to_be_redrawn=[];this.max_low=0;this.max_high=0;this.zoom_factor=3;this.min_separation=30;this.has_changes=false;this.load_chroms_deferred=null;this.init();this.canvas_manager=new ae(af.get(0).ownerDocument);this.reset()};p(ac.prototype,x.prototype,{init:function(){var ah=this.container,af=this;this.top_container=$("<div/>").addClass("top-container").appendTo(ah);this.browser_content_div=$("<div/>").addClass("content").css("position","relative").appendTo(ah);this.bottom_container=$("<div/>").addClass("bottom-container").appendTo(ah);this.top_labeltrack=$("<div/>").addClass("top-labeltrack").appendTo(this.top_container);this.viewport_container=$("<div/>").addClass("viewport-container").attr("id","viewport-container").appendTo(this.browser_content_div);this.content_div=this.viewport_container;l(this.viewport_container,af);this.intro_div=$("<div/>").addClass("intro").appendTo(this.viewport_container).hide();var ai=$("<div/>").text("Add Datasets to Visualization").addClass("action-button").appendTo(this.intro_div).click(function(){add_tracks()});this.nav_labeltrack=$("<div/>").addClass("nav-labeltrack").appendTo(this.bottom_container);this.nav_container=$("<div/>").addClass("nav-container").prependTo(this.top_container);this.nav=$("<div/>").addClass("nav").appendTo(this.nav_container);this.overview=$("<div/>").addClass("overview").appendTo(this.bottom_container);this.overview_viewport=$("<div/>").addClass("overview-viewport").appendTo(this.overview);this.overview_close=$("<a/>").attr("href","javascript:void(0);").attr("title","Close overview").addClass("icon-button overview-close tooltip").hide().appendTo(this.overview_viewport);this.overview_highlight=$("<div/>").addClass("overview-highlight").hide().appendTo(this.overview_viewport);this.overview_box_background=$("<div/>").addClass("overview-boxback").appendTo(this.overview_viewport);this.overview_box=$("<div/>").addClass("overview-box").appendTo(this.overview_viewport);this.default_overview_height=this.overview_box.height();this.nav_controls=$("<div/>").addClass("nav-controls").appendTo(this.nav);this.chrom_select=$("<select/>").attr({name:"chrom"}).css("width","15em").addClass("no-autocomplete").append("<option value=''>Loading</option>").appendTo(this.nav_controls);var ag=function(aj){if(aj.type==="focusout"||(aj.keyCode||aj.which)===13||(aj.keyCode||aj.which)===27){if((aj.keyCode||aj.which)!==27){af.go_to($(this).val())}$(this).hide();$(this).val("");af.location_span.show();af.chrom_select.show()}};this.nav_input=$("<input/>").addClass("nav-input").hide().bind("keyup focusout",ag).appendTo(this.nav_controls);this.location_span=$("<span/>").addClass("location").attr("original-title","Click to change location").tipsy({gravity:"n"}).appendTo(this.nav_controls);this.location_span.click(function(){af.location_span.hide();af.chrom_select.hide();af.nav_input.val(af.chrom+":"+af.low+"-"+af.high);af.nav_input.css("display","inline-block");af.nav_input.select();af.nav_input.focus()});if(this.vis_id!==undefined){this.hidden_input=$("<input/>").attr("type","hidden").val(this.vis_id).appendTo(this.nav_controls)}this.zo_link=$("<a/>").attr("id","zoom-out").attr("title","Zoom out").tipsy({gravity:"n"}).click(function(){af.zoom_out();af.request_redraw()}).appendTo(this.nav_controls);this.zi_link=$("<a/>").attr("id","zoom-in").attr("title","Zoom in").tipsy({gravity:"n"}).click(function(){af.zoom_in();af.request_redraw()}).appendTo(this.nav_controls);this.load_chroms_deferred=this.load_chroms({low:0});this.chrom_select.bind("change",function(){af.change_chrom(af.chrom_select.val())});this.browser_content_div.click(function(aj){$(this).find("input").trigger("blur")});this.browser_content_div.bind("dblclick",function(aj){af.zoom_in(aj.pageX,this.viewport_container)});this.overview_box.bind("dragstart",function(aj,ak){this.current_x=ak.offsetX}).bind("drag",function(aj,al){var am=al.offsetX-this.current_x;this.current_x=al.offsetX;var ak=Math.round(am/af.viewport_container.width()*(af.max_high-af.max_low));af.move_delta(-ak)});this.overview_close.click(function(){af.reset_overview()});this.viewport_container.bind("draginit",function(aj,ak){if(aj.clientX>af.viewport_container.width()-16){return false}}).bind("dragstart",function(aj,ak){ak.original_low=af.low;ak.current_height=aj.clientY;ak.current_x=ak.offsetX}).bind("drag",function(al,an){var aj=$(this);var ao=an.offsetX-an.current_x;var ak=aj.scrollTop()-(al.clientY-an.current_height);aj.scrollTop(ak);an.current_height=al.clientY;an.current_x=an.offsetX;var am=Math.round(ao/af.viewport_container.width()*(af.high-af.low));af.move_delta(am)}).bind("mousewheel",function(al,an,ak,aj){if(ak){ak*=50;var am=Math.round(-ak/af.viewport_container.width()*(af.high-af.low));af.move_delta(am)}});this.top_labeltrack.bind("dragstart",function(aj,ak){return $("<div />").css({height:af.browser_content_div.height()+af.top_labeltrack.height()+af.nav_labeltrack.height()+1,top:"0px",position:"absolute","background-color":"#ccf",opacity:0.5,"z-index":1000}).appendTo($(this))}).bind("drag",function(an,ao){$(ao.proxy).css({left:Math.min(an.pageX,ao.startX),width:Math.abs(an.pageX-ao.startX)});var ak=Math.min(an.pageX,ao.startX)-af.container.offset().left,aj=Math.max(an.pageX,ao.startX)-af.container.offset().left,am=(af.high-af.low),al=af.viewport_container.width();af.update_location(Math.round(ak/al*am)+af.low,Math.round(aj/al*am)+af.low)}).bind("dragend",function(ao,ap){var ak=Math.min(ao.pageX,ap.startX),aj=Math.max(ao.pageX,ap.startX),am=(af.high-af.low),al=af.viewport_container.width(),an=af.low;af.low=Math.round(ak/al*am)+an;af.high=Math.round(aj/al*am)+an;$(ap.proxy).remove();af.request_redraw()});this.add_label_track(new ab(this,{content_div:this.top_labeltrack}));this.add_label_track(new ab(this,{content_div:this.nav_labeltrack}));$(window).bind("resize",function(){af.resize_window()});$(document).bind("redraw",function(){af.redraw()});this.reset();$(window).trigger("resize")},update_intro_div:function(){if(this.drawables.length===0){this.intro_div.show()}else{this.intro_div.hide()}},update_location:function(af,ag){this.location_span.text(commatize(af)+" - "+commatize(ag));this.nav_input.val(this.chrom+":"+commatize(af)+"-"+commatize(ag))},load_chroms:function(ah){ah.num=v;ah.dbkey=this.dbkey;var af=this,ag=$.Deferred();$.ajax({url:chrom_url,data:ah,dataType:"json",success:function(aj){if(aj.chrom_info.length===0){alert("Invalid chromosome: "+ah.chrom);return}if(aj.reference){af.add_label_track(new z(af))}af.chrom_data=aj.chrom_info;var am='<option value="">Select Chrom/Contig</option>';for(var al=0,ai=af.chrom_data.length;al<ai;al++){var ak=af.chrom_data[al].chrom;am+='<option value="'+ak+'">'+ak+"</option>"}if(aj.prev_chroms){am+='<option value="previous">Previous '+v+"</option>"}if(aj.next_chroms){am+='<option value="next">Next '+v+"</option>"}af.chrom_select.html(am);af.chrom_start_index=aj.start_index;ag.resolve(aj)},error:function(){alert("Could not load chroms for this dbkey:",af.dbkey)}});return ag},change_chrom:function(ak,ag,am){if(!ak||ak==="None"){return}var ah=this;if(ak==="previous"){ah.load_chroms({low:this.chrom_start_index-v});return}if(ak==="next"){ah.load_chroms({low:this.chrom_start_index+v});return}var al=$.grep(ah.chrom_data,function(an,ao){return an.chrom===ak})[0];if(al===undefined){ah.load_chroms({chrom:ak},function(){ah.change_chrom(ak,ag,am)});return}else{if(ak!==ah.chrom){ah.chrom=ak;ah.chrom_select.val(ah.chrom);ah.max_high=al.len-1;ah.reset();ah.request_redraw(true);for(var aj=0,af=ah.drawables.length;aj<af;aj++){var ai=ah.drawables[aj];if(ai.init){ai.init()}}}if(ag!==undefined&&am!==undefined){ah.low=Math.max(ag,0);ah.high=Math.min(am,ah.max_high)}ah.reset_overview();ah.request_redraw()}},go_to:function(aj){aj=aj.replace(/ |,/g,"");var an=this,af,ai,ag=aj.split(":"),al=ag[0],am=ag[1];if(am!==undefined){try{var ak=am.split("-");af=parseInt(ak[0],10);ai=parseInt(ak[1],10)}catch(ah){return false}}an.change_chrom(al,af,ai)},move_fraction:function(ah){var af=this;var ag=af.high-af.low;this.move_delta(ah*ag)},move_delta:function(ah){var af=this;var ag=af.high-af.low;if(af.low-ah<af.max_low){af.low=af.max_low;af.high=af.max_low+ag}else{if(af.high-ah>af.max_high){af.high=af.max_high;af.low=af.max_high-ag}else{af.high-=ah;af.low-=ah}}af.request_redraw()},add_drawable:function(af){x.prototype.add_drawable.call(this,af);af.init();this.has_changes=true;this.update_intro_div()},add_label_track:function(af){af.view=this;af.init();this.label_tracks.push(af)},remove_drawable:function(ah,ag){x.prototype.remove_drawable.call(this,ah);if(ag){var af=this;ah.container_div.hide(0,function(){$(this).remove();af.update_intro_div()});this.has_changes=true}},reset:function(){this.low=this.max_low;this.high=this.max_high;this.viewport_container.find(".yaxislabel").remove()},request_redraw:function(an,af,am,ag){var al=this,aj=(ag?[ag]:al.drawables),ah;var ag;for(var ak=0;ak<aj.length;ak++){ag=aj[ak];ah=-1;for(var ai=0;ai<al.tracks_to_be_redrawn.length;ai++){if(al.tracks_to_be_redrawn[ai][0]===ag){ah=ai;break}}if(ah<0){al.tracks_to_be_redrawn.push([ag,af,am])}else{al.tracks_to_be_redrawn[ak][1]=af;al.tracks_to_be_redrawn[ak][2]=am}}requestAnimationFrame(function(){al._redraw(an)})},_redraw:function(ap){var am=this.low,ai=this.high;if(am<this.max_low){am=this.max_low}if(ai>this.max_high){ai=this.max_high}var ao=this.high-this.low;if(this.high!==0&&ao<this.min_separation){ai=am+this.min_separation}this.low=Math.floor(am);this.high=Math.ceil(ai);this.resolution=Math.pow(A,Math.ceil(Math.log((this.high-this.low)/Q)/Math.log(A)));this.zoom_res=Math.pow(u,Math.max(0,Math.ceil(Math.log(this.resolution,u)/Math.log(u))));var af=(this.low/(this.max_high-this.max_low)*this.overview_viewport.width())||0;var al=((this.high-this.low)/(this.max_high-this.max_low)*this.overview_viewport.width())||0;var aq=13;this.overview_box.css({left:af,width:Math.max(aq,al)}).show();if(al<aq){this.overview_box.css("left",af-(aq-al)/2)}if(this.overview_highlight){this.overview_highlight.css({left:af,width:al})}this.update_location(this.low,this.high);if(!ap){var ah,ag,an;for(var aj=0,ak=this.tracks_to_be_redrawn.length;aj<ak;aj++){ah=this.tracks_to_be_redrawn[aj][0];ag=this.tracks_to_be_redrawn[aj][1];an=this.tracks_to_be_redrawn[aj][2];if(ah){ah._draw(ag,an)}}this.tracks_to_be_redrawn=[];for(aj=0,ak=this.label_tracks.length;aj<ak;aj++){this.label_tracks[aj]._draw()}}},zoom_in:function(ag,ah){if(this.max_high===0||this.high-this.low<this.min_separation){return}var ai=this.high-this.low,aj=ai/2+this.low,af=(ai/this.zoom_factor)/2;if(ag){aj=ag/this.viewport_container.width()*(this.high-this.low)+this.low}this.low=Math.round(aj-af);this.high=Math.round(aj+af);this.request_redraw()},zoom_out:function(){if(this.max_high===0){return}var ag=this.high-this.low,ah=ag/2+this.low,af=(ag*this.zoom_factor)/2;this.low=Math.round(ah-af);this.high=Math.round(ah+af);this.request_redraw()},resize_window:function(){this.viewport_container.height(this.container.height()-this.top_container.height()-this.bottom_container.height());this.nav_container.width(this.container.width());this.request_redraw()},set_overview:function(ah){if(this.overview_drawable){if(this.overview_drawable.dataset_id===ah.dataset_id){return}this.overview_viewport.find(".track").remove()}var ag=ah.copy({content_div:this.overview_viewport}),af=this;ag.header_div.hide();ag.is_overview=true;af.overview_drawable=ag;this.overview_drawable.postdraw_actions=function(){af.overview_highlight.show().height(af.overview_drawable.content_div.height());af.overview_viewport.height(af.overview_drawable.content_div.height()+af.overview_box.outerHeight());af.overview_close.show();af.resize_window()};af.overview_drawable.request_draw();af.has_changes=true},reset_overview:function(){$(".tipsy").remove();this.overview_viewport.find(".track-tile").remove();this.overview_viewport.height(this.default_overview_height);this.overview_box.height(this.default_overview_height);this.overview_close.hide();this.overview_highlight.hide();view.resize_window();view.overview_drawable=null}});var r=function(ah,al){this.track=ah;this.name=al.name;this.params=[];var at=al.params;for(var ai=0;ai<at.length;ai++){var an=at[ai],ag=an.name,ar=an.label,aj=unescape(an.html),au=an.value,ap=an.type;if(ap==="number"){this.params[this.params.length]=new f(ag,ar,aj,au,an.min,an.max)}else{if(ap=="select"){this.params[this.params.length]=new N(ag,ar,aj,au)}else{console.log("WARNING: unrecognized tool parameter type:",ag,ap)}}}this.parent_div=$("<div/>").addClass("dynamic-tool").hide();this.parent_div.bind("drag",function(aw){aw.stopPropagation()}).click(function(aw){aw.stopPropagation()}).bind("dblclick",function(aw){aw.stopPropagation()});var aq=$("<div class='tool-name'>").appendTo(this.parent_div).text(this.name);var ao=this.params;var am=this;$.each(this.params,function(ax,aA){var az=$("<div>").addClass("param-row").appendTo(am.parent_div);var aw=$("<div>").addClass("param-label").text(aA.label).appendTo(az);var ay=$("<div/>").addClass("slider").html(aA.html).appendTo(az);ay.find(":input").val(aA.value);$("<div style='clear: both;'/>").appendTo(az)});this.parent_div.find("input").click(function(){$(this).select()});var av=$("<div>").addClass("param-row").appendTo(this.parent_div);var ak=$("<input type='submit'>").attr("value","Run on complete dataset").appendTo(av);var af=$("<input type='submit'>").attr("value","Run on visible region").css("margin-left","3em").appendTo(av);var am=this;af.click(function(){am.run_on_region()});ak.click(function(){am.run_on_dataset()})};p(r.prototype,{get_param_values_dict:function(){var af={};this.parent_div.find(":input").each(function(){var ag=$(this).attr("name"),ah=$(this).val();af[ag]=JSON.stringify(ah)});return af},get_param_values:function(){var ag=[];var af={};this.parent_div.find(":input").each(function(){var ah=$(this).attr("name"),ai=$(this).val();if(ah){ag[ag.length]=ai}});return ag},run_on_dataset:function(){var af=this;af.run({dataset_id:this.track.original_dataset_id,tool_id:af.name},null,function(ag){show_modal(af.name+" is Running",af.name+" is running on the complete dataset. Tool outputs are in dataset's history.",{Close:hide_modal})})},run_on_region:function(){var ag={dataset_id:this.track.original_dataset_id,chrom:this.track.view.chrom,low:this.track.view.low,high:this.track.view.high,tool_id:this.name},aj=this.track,ah=ag.tool_id+aj.tool_region_and_parameters_str(ag.chrom,ag.low,ag.high),af;if(aj.container===view){var ai=new P(this.name,this.track.view,this.track.container);aj.container.add_drawable(ai);aj.container.remove_drawable(aj);ai.add_drawable(aj);aj.container_div.appendTo(ai.content_div);af=ai}else{af=aj.container}var ak=new aj.constructor(ah,view,af,"hda");ak.init_for_tool_data();ak.change_mode(aj.mode);af.add_drawable(ak);ak.content_div.text("Starting job.");this.run(ag,ak,function(al){ak.dataset_id=al.dataset_id;ak.content_div.text("Running job.");ak.init()})},run:function(ag,ah,ai){$.extend(ag,this.get_param_values_dict());var af=function(){$.getJSON(rerun_tool_url,ag,function(aj){if(aj==="no converter"){ah.container_div.addClass("error");ah.content_div.text(J)}else{if(aj.error){ah.container_div.addClass("error");ah.content_div.text(w+aj.message)}else{if(aj==="pending"){ah.container_div.addClass("pending");ah.content_div.text("Converting input data so that it can be used quickly with tool.");setTimeout(af,2000)}else{ai(aj)}}}})};af()}});var N=function(ag,af,ah,ai){this.name=ag;this.label=af;this.html=ah;this.value=ai};var f=function(ah,ag,aj,ak,ai,af){N.call(this,ah,ag,aj,ak);this.min=ai;this.max=af};var g=function(ag,af,ah,ai){this.name=ag;this.index=af;this.tool_id=ah;this.tool_exp_name=ai};var V=function(ag,af,ah,ai){g.call(this,ag,af,ah,ai);this.low=-Number.MAX_VALUE;this.high=Number.MAX_VALUE;this.min=Number.MAX_VALUE;this.max=-Number.MAX_VALUE;this.container=null;this.slider=null;this.slider_label=null};p(V.prototype,{applies_to:function(af){if(af.length>this.index){return true}return false},keep:function(af){if(!this.applies_to(af)){return true}var ag=af[this.index];return(isNaN(ag)||(ag>=this.low&&ag<=this.high))},update_attrs:function(ag){var af=false;if(!this.applies_to(ag)){return af}if(ag[this.index]<this.min){this.min=Math.floor(ag[this.index]);af=true}if(ag[this.index]>this.max){this.max=Math.ceil(ag[this.index]);af=true}return af},update_ui_elt:function(){if(this.min!=this.max){this.container.show()}else{this.container.hide()}var ah=function(ak,ai){var aj=ai-ak;return(aj<=2?0.01:1)};var ag=this.slider.slider("option","min"),af=this.slider.slider("option","max");if(this.min<ag||this.max>af){this.slider.slider("option","min",this.min);this.slider.slider("option","max",this.max);this.slider.slider("option","step",ah(this.min,this.max));this.slider.slider("option","values",[this.min,this.max])}}});var aa=function(aq,ay){this.track=aq;this.filters=[];for(var at=0;at<ay.length;at++){var au=ay[at],az=au.name,af=au.type,ah=au.index,ax=au.tool_id,aw=au.tool_exp_name;if(af==="int"||af==="float"){this.filters[at]=new V(az,ah,ax,aw)}else{console.log("ERROR: unsupported filter: ",az,af)}}var ai=function(aA,aB,aC){aA.click(function(){var aD=aB.text();max=parseFloat(aC.slider("option","max")),input_size=(max<=1?4:max<=1000000?max.toString().length:6),multi_value=false;if(aC.slider("option","values")){input_size=2*input_size+1;multi_value=true}aB.text("");$("<input type='text'/>").attr("size",input_size).attr("maxlength",input_size).attr("value",aD).appendTo(aB).focus().select().click(function(aE){aE.stopPropagation()}).blur(function(){$(this).remove();aB.text(aD)}).keyup(function(aI){if(aI.keyCode===27){$(this).trigger("blur")}else{if(aI.keyCode===13){var aG=aC.slider("option","min"),aE=aC.slider("option","max"),aH=function(aJ){return(isNaN(aJ)||aJ>aE||aJ<aG)},aF=$(this).val();if(!multi_value){aF=parseFloat(aF);if(aH(aF)){alert("Parameter value must be in the range ["+aG+"-"+aE+"]");return $(this)}}else{aF=aF.split("-");aF=[parseFloat(aF[0]),parseFloat(aF[1])];if(aH(aF[0])||aH(aF[1])){alert("Parameter value must be in the range ["+aG+"-"+aE+"]");return $(this)}}aC.slider((multi_value?"values":"value"),aF)}}})})};this.parent_div=$("<div/>").addClass("filters").hide();this.parent_div.bind("drag",function(aA){aA.stopPropagation()}).click(function(aA){aA.stopPropagation()}).bind("dblclick",function(aA){aA.stopPropagation()}).bind("keydown",function(aA){aA.stopPropagation()});var av=$("<div/>").addClass("sliders").appendTo(this.parent_div);var an=this;$.each(this.filters,function(aD,aF){aF.container=$("<div/>").addClass("filter-row slider-row").appendTo(av);var aE=$("<div/>").addClass("elt-label").appendTo(aF.container);var aC=$("<span/>").addClass("slider-name").text(aF.name+" ").appendTo(aE);var aB=$("<span/>");var aH=$("<span/>").addClass("slider-value").appendTo(aE).append("[").append(aB).append("]");var aA=$("<div/>").addClass("slider").appendTo(aF.container);aF.control_element=$("<div/>").attr("id",aF.name+"-filter-control").appendTo(aA);var aG=[0,0];aF.control_element.slider({range:true,min:Number.MAX_VALUE,max:-Number.MIN_VALUE,values:[0,0],slide:function(aJ,aK){var aI=aK.values;aB.text(aI[0]+"-"+aI[1]);aF.low=aI[0];aF.high=aI[1];an.track.request_draw(true,true)},change:function(aI,aJ){aF.control_element.slider("option","slide").call(aF.control_element,aI,aJ)}});aF.slider=aF.control_element;aF.slider_label=aB;ai(aH,aB,aF.control_element);$("<div style='clear: both;'/>").appendTo(aF.container)});if(this.filters.length!==0){var ak=$("<div/>").addClass("param-row").appendTo(av);var am=$("<input type='submit'/>").attr("value","Run on complete dataset").appendTo(ak);var ag=this;am.click(function(){ag.run_on_dataset()})}var ap=$("<div/>").addClass("display-controls").appendTo(this.parent_div),ar,al,ao,aj={Transparency:function(aA){an.alpha_filter=aA},Height:function(aA){an.height_filter=aA}};$.each(aj,function(aC,aB){ar=$("<div/>").addClass("filter-row").appendTo(ap),al=$("<span/>").addClass("elt-label").text(aC+":").appendTo(ar),ao=$("<select/>").attr("name",aC+"_dropdown").css("float","right").appendTo(ar);$("<option/>").attr("value",-1).text("== None ==").appendTo(ao);for(var aA=0;aA<an.filters.length;aA++){$("<option/>").attr("value",aA).text(an.filters[aA].name).appendTo(ao)}ao.change(function(){$(this).children("option:selected").each(function(){var aD=parseInt($(this).val());aj[aC]((aD>=0?an.filters[aD]:null));an.track.request_draw(true,true)})});$("<div style='clear: both;'/>").appendTo(ar)});$("<div style='clear: both;'/>").appendTo(this.parent_div)};p(aa.prototype,{reset_filters:function(){for(var af=0;af<this.filters.length;af++){filter=this.filters[af];filter.slider.slider("option","values",[filter.min,filter.max])}this.alpha_filter=null;this.height_filter=null},run_on_dataset:function(){var an=function(ar,ap,aq){if(!(ap in ar)){ar[ap]=aq}return ar[ap]};var ah={},af,ag,ai;for(var aj=0;aj<this.filters.length;aj++){af=this.filters[aj];if(af.tool_id){if(af.min!=af.low){ag=an(ah,af.tool_id,[]);ag[ag.length]=af.tool_exp_name+" >= "+af.low}if(af.max!=af.high){ag=an(ah,af.tool_id,[]);ag[ag.length]=af.tool_exp_name+" <= "+af.high}}}var al=[];for(var ao in ah){al[al.length]=[ao,ah[ao]]}var am=al.length;(function ak(aw,at){var aq=at[0],ar=aq[0],av=aq[1],au="("+av.join(") and (")+")",ap={cond:au,input:aw,target_dataset_id:aw,tool_id:ar},at=at.slice(1);$.getJSON(run_tool_url,ap,function(ax){if(ax.error){show_modal("Filter Dataset","Error running tool "+ar,{Close:hide_modal})}else{if(at.length===0){show_modal("Filtering Dataset","Filter(s) are running on the complete dataset. Outputs are in dataset's history.",{Close:hide_modal})}else{ak(ax.dataset_id,at)}}})})(this.track.dataset_id,al)}});var B=function(af,ag){L.Scaler.call(this,ag);this.filter=af};B.prototype.gen_val=function(af){if(this.filter.high===Number.MAX_VALUE||this.filter.low===-Number.MAX_VALUE||this.filter.low===this.filter.high){return this.default_val}return((parseFloat(af[this.filter.index])-this.filter.low)/(this.filter.high-this.filter.low))};var E=function(af){this.track=af.track;this.params=af.params;this.values={};this.restore_values((af.saved_values?af.saved_values:{}));this.onchange=af.onchange};p(E.prototype,{restore_values:function(af){var ag=this;$.each(this.params,function(ah,ai){if(af[ai.key]!==undefined){ag.values[ai.key]=af[ai.key]}else{ag.values[ai.key]=ai.default_value}})},build_form:function(){var ai=this;var af=$("<div />");var ah;function ag(am,aj){for(var ao=0;ao<am.length;ao++){ah=am[ao];if(ah.hidden){continue}var ak="param_"+ao;var at=ai.values[ah.key];var av=$("<div class='form-row' />").appendTo(aj);av.append($("<label />").attr("for",ak).text(ah.label+":"));if(ah.type==="bool"){av.append($('<input type="checkbox" />').attr("id",ak).attr("name",ak).attr("checked",at))}else{if(ah.type==="text"){av.append($('<input type="text"/>').attr("id",ak).val(at).click(function(){$(this).select()}))}else{if(ah.type=="select"){var aq=$("<select />").attr("id",ak);for(var an=0;an<ah.options.length;an++){$("<option/>").text(ah.options[an].label).attr("value",ah.options[an].value).appendTo(aq)}aq.val(at);av.append(aq)}else{if(ah.type==="color"){var ap=$("<input />").attr("id",ak).attr("name",ak).val(at);var ar=$("<div class='tipsy tipsy-west' style='position: absolute;' />").hide();var al=$("<div style='background-color: black; padding: 10px;'></div>").appendTo(ar);var au=$("<div/>").appendTo(al).farbtastic({width:100,height:100,callback:ap,color:at});$("<div />").append(ap).append(ar).appendTo(av).bind("click",function(aw){ar.css({left:$(this).position().left+$(ap).width()+5,top:$(this).position().top-($(ar).height()/2)+($(ap).height()/2)}).show();$(document).bind("click.color-picker",function(){ar.hide();$(document).unbind("click.color-picker")});aw.stopPropagation()})}else{av.append($("<input />").attr("id",ak).attr("name",ak).val(at))}}}}if(ah.help){av.append($("<div class='help'/>").text(ah.help))}}}ag(this.params,af);return af},update_from_form:function(af){var ah=this;var ag=false;$.each(this.params,function(ai,ak){if(!ak.hidden){var al="param_"+ai;var aj=af.find("#"+al).val();if(ak.type==="float"){aj=parseFloat(aj)}else{if(ak.type==="int"){aj=parseInt(aj)}else{if(ak.type==="bool"){aj=af.find("#"+al).is(":checked")}}}if(aj!==ah.values[ak.key]){ah.values[ak.key]=aj;ag=true}}});if(ag){this.onchange()}}});var b=function(af,ai,ah,ag,aj){this.track=af;this.index=ai;this.low=ai*Q*ah;this.high=(ai+1)*Q*ah;this.resolution=ah;this.html_elt=$("<div class='track-tile'/>").append(ag);this.data=aj;this.stale=false};b.prototype.predisplay_actions=function(){};var k=function(af,ai,ah,ag,aj,ak){b.call(this,af,ai,ah,ag,aj);this.max_val=ak};p(k.prototype,b.prototype);var O=function(ah,am,ai,ag,ak,al,aq,ao){b.call(this,ah,am,ai,ag,ak);this.mode=al;this.message=aq;this.feature_mapper=ao;if(this.message){var ag=this.html_elt.children()[0],ap=$("<div/>").addClass("tile-message").text(this.message).css({height:C-1,width:ag.width}).prependTo(this.html_elt),aj=$("<a href='javascript:void(0);'/>").addClass("icon more-down").appendTo(ap),af=$("<a href='javascript:void(0);'/>").addClass("icon more-across").appendTo(ap);var an=this;aj.click(function(){an.stale=true;ah.data_manager.get_more_data(an.low,an.high,ah.mode,an.resolution,{},ah.data_manager.DEEP_DATA_REQ);ah.request_draw()}).dblclick(function(ar){ar.stopPropagation()});af.click(function(){an.stale=true;ah.data_manager.get_more_data(an.low,an.high,ah.mode,an.resolution,{},ah.data_manager.BROAD_DATA_REQ);ah.request_draw()}).dblclick(function(ar){ar.stopPropagation()})}};p(O.prototype,b.prototype);O.prototype.predisplay_actions=function(){var ag=this,af={};if(ag.mode!=="Pack"){return}$(this.html_elt).hover(function(){this.hovered=true;$(this).mousemove()},function(){this.hovered=false;$(this).siblings(".feature-popup").remove()}).mousemove(function(ar){if(!this.hovered){return}var am=$(this).offset(),aq=ar.pageX-am.left,ap=ar.pageY-am.top,aw=ag.feature_mapper.get_feature_data(aq,ap),an=(aw?aw[0]:null);$(this).siblings(".feature-popup").each(function(){if(!an||$(this).attr("id")!==an.toString()){$(this).remove()}});if(aw){var ai=af[an];if(!ai){var an=aw[0],at={name:aw[3],start:aw[1],end:aw[2],strand:aw[4]},al=ag.track.filters_manager.filters,ak;for(var ao=0;ao<al.length;ao++){ak=al[ao];at[ak.name]=aw[ak.index]}var ai=$("<div/>").attr("id",an).addClass("feature-popup"),ax=$("<table/>"),av,au,ay;for(av in at){au=at[av];ay=$("<tr/>").appendTo(ax);$("<th/>").appendTo(ay).text(av);$("<td/>").attr("align","left").appendTo(ay).text(typeof(au)=="number"?Z(au,2):au)}ai.append($("<div class='feature-popup-inner'>").append(ax));af[an]=ai}ai.appendTo($(ag.html_elt).parent());var aj=aq+parseInt(ag.html_elt.css("left"))-ai.width()/2,ah=ap+parseInt(ag.html_elt.css("top"))+7;ai.css("left",aj+"px").css("top",ah+"px")}else{if(!ar.isPropagationStopped()){ar.stopPropagation();$(this).siblings().each(function(){$(this).trigger(ar)})}}}).mouseleave(function(){$(this).siblings(".feature-popup").remove()})};var i=function(ai,ag,af,ah,ak,aj,al){q.call(this,ai,ag,af,{},"draghandle");this.data_url=(aj?aj:default_data_url);this.data_url_extra_params={};this.data_query_wait=(al?al:K);this.dataset_check_url=converted_datasets_state_url;this.data_manager=(ak?ak:new S(H,this));this.content_div=$("<div class='track-content'>").appendTo(this.container_div);if(this.container){this.container.content_div.append(this.container_div)}};p(i.prototype,q.prototype,{action_icons_def:[{name:"mode_icon",title:"Set display mode",css_class:"chevron-expand",on_click_fn:function(){}},q.prototype.action_icons_def[0],{name:"overview_icon",title:"Set as overview",css_class:"overview-icon",on_click_fn:function(af){af.view.set_overview(af)}},q.prototype.action_icons_def[1],{name:"filters_icon",title:"Filters",css_class:"filters-icon",on_click_fn:function(af){af.filters_div.toggle();af.filters_manager.reset_filters()}},{name:"tools_icon",title:"Tools",css_class:"tools-icon",on_click_fn:function(af){af.dynamic_tool_div.toggle();if(af.dynamic_tool_div.is(":visible")){af.set_name(af.name+af.tool_region_and_parameters_str())}else{af.revert_name()}$(".tipsy").remove()}},q.prototype.action_icons_def[2]],can_draw:function(){if(this.dataset_id&&q.prototype.can_draw.call(this)){return true}return false},build_container_div:function(){return $("<div/>").addClass("track").attr("id","track_"+this.id).css("position","relative")},build_header_div:function(){var af=$("<div class='track-header'/>");if(this.view.editor){this.drag_div=$("<div/>").addClass(this.drag_handle_class).appendTo(af)}this.name_div=$("<div/>").addClass("track-name").appendTo(af).text(this.name).attr("id",this.name.replace(/\s+/g,"-").replace(/[^a-zA-Z0-9\-]/g,"").toLowerCase());return af},build_action_icons:function(){q.prototype.build_action_icons.call(this,this.action_icons_def);var ag=this;if(ag.display_modes!==undefined){var ak=(ag.config&&ag.config.values.mode?ag.config.values.mode:ag.display_modes[0]);ag.mode=ak;this.action_icons.mode_icon.attr("title","Set display mode (now: "+ag.mode+")");var ai={};for(var ah=0,af=ag.display_modes.length;ah<af;ah++){var aj=ag.display_modes[ah];ai[aj]=function(al){return function(){ag.change_mode(al);ag.icons_div.show();ag.container_div.mouseleave(function(){ag.icons_div.hide()})}}(aj)}make_popupmenu(this.action_icons.mode_icon,ai)}},hide_contents:function(){this.content_div.children().remove();this.content_div.hide();this.container_div.find(".yaxislabel, .track-resize").hide()},show_contents:function(){this.content_div.show();this.container_div.find(".yaxislabel, .track-resize").show();this.request_draw()},get_type:function(){if(this instanceof ab){return"LabelTrack"}else{if(this instanceof z){return"ReferenceTrack"}else{if(this instanceof j){return"LineTrack"}else{if(this instanceof W){return"ReadTrack"}else{if(this instanceof U){return"VcfTrack"}else{if(this instanceof h){return"CompositeTrack"}else{if(this instanceof d){return"FeatureTrack"}}}}}}}return""},init:function(){var af=this;af.enabled=false;af.tile_cache.clear();af.data_manager.clear();af.content_div.css("height","auto");af.container_div.removeClass("nodata error pending");if(!af.dataset_id){return}$.getJSON(converted_datasets_state_url,{hda_ldda:af.hda_ldda,dataset_id:af.dataset_id,chrom:af.view.chrom},function(ag){if(!ag||ag==="error"||ag.kind==="error"){af.container_div.addClass("error");af.content_div.text(o);if(ag.message){var ah=$(" <a href='javascript:void(0);'></a>").text("View error").click(function(){show_modal("Trackster Error","<pre>"+ag.message+"</pre>",{Close:hide_modal})});af.content_div.append(ah)}}else{if(ag==="no converter"){af.container_div.addClass("error");af.content_div.text(J)}else{if(ag==="no data"||(ag.data!==undefined&&(ag.data===null||ag.data.length===0))){af.container_div.addClass("nodata");af.content_div.text(D)}else{if(ag==="pending"){af.container_div.addClass("pending");af.content_div.text(t);setTimeout(function(){af.init()},af.data_query_wait)}else{if(ag.status==="data"){if(ag.valid_chroms){af.valid_chroms=ag.valid_chroms;af.update_icons()}af.content_div.text(Y);if(af.view.chrom){af.content_div.text("");af.content_div.css("height",af.height_px+"px");af.enabled=true;$.when(af.predraw_init()).done(function(){af.container_div.removeClass("nodata error pending");af.request_draw()})}}}}}}});this.update_icons()},predraw_init:function(){}});var M=function(aj,ah,ag,ai,am,al,ak){i.call(this,aj,ah,ag,ai,ak);var af=this,ah=af.view;m(af.container_div,af.drag_handle_class,".group",af);this.filters_manager=new aa(this,(am!==undefined?am:{}));this.filters_available=false;this.filters_visible=false;this.tool=(al!==undefined&&obj_length(al)>0?new r(this,al):undefined);this.tile_cache=new c(R);if(this.header_div){if(this.filters_manager){this.filters_div=this.filters_manager.parent_div;this.header_div.after(this.filters_div)}if(this.tool){this.dynamic_tool_div=this.tool.parent_div;this.header_div.after(this.dynamic_tool_div)}}};p(M.prototype,q.prototype,i.prototype,{copy:function(af){var ag=new this.constructor(this.name,this.view,af,this.hda_ldda,this.dataset_id,this.prefs,this.filters,this.tool,this.data_manager);ag.enabled=this.enabled;return ag},to_dict:function(){return{track_type:this.get_type(),name:this.name,hda_ldda:this.hda_ldda,dataset_id:this.dataset_id,prefs:this.prefs,mode:this.mode,}},from_dict:function(ah,ag){var af=new this.constructor(ah.name,view,ag,ah.hda_ldda,ah.dataset_id,ah.prefs,ah.filters,ah.tool);if(ah.mode){af.change_mode(ah.mode)}return af},change_mode:function(ag){var af=this;af.mode=ag;af.config.values.mode=ag;af.tile_cache.clear();af.request_draw();this.action_icons.mode_icon.attr("title","Set display mode (now: "+af.mode+")");return af},update_icons:function(){var af=this;if(af.filters_available){af.action_icons.filters_icon.show()}else{af.action_icons.filters_icon.hide()}if(af.tool){af.action_icons.tools_icon.show()}else{af.action_icons.tools_icon.hide()}},_gen_tile_cache_key:function(ag,ah,af){return ag+"_"+ah+"_"+af},request_draw:function(ag,af){this.view.request_redraw(false,ag,af,this)},_draw:function(ah,ar){if(!this.can_draw()){return}var ap=this.view.low,al=this.view.high,an=al-ap,ai=this.view.container.width(),av=ai/an,ak=this.view.resolution,au=this.content_div;if(this.is_overview){ap=this.view.max_low;al=this.view.max_high;ak=Math.pow(A,Math.ceil(Math.log((view.max_high-view.max_low)/Q)/Math.log(A)));av=ai/(view.max_high-view.max_low)}if(!ar){this.content_div.children().addClass("remove")}this.max_height=0;var ag=Math.floor(ap/ak/Q);var ao=true;var at=[];var af=0;var am=function(aw){return("track" in aw)};while((ag*Q*ak)<al){var aq=this.draw_helper(ah,ai,ag,ak,au,av);if(am(aq)){at.push(aq)}else{ao=false}ag+=1;af++}if(!ar){this.content_div.children(".remove").remove()}var aj=this;if(ao){aj.postdraw_actions(at,ai,av,ar)}},postdraw_actions:function(aj,ak,al,af){var ah=this;var ai=false;for(var ag=0;ag<aj.length;ag++){if(aj[ag].message){ai=true;break}}if(ai){for(var ag=0;ag<aj.length;ag++){tile=aj[ag];if(!tile.message){tile.html_elt.css("padding-top",C)}}}},draw_helper:function(af,aq,au,ar,ai,aj,al,an){var ap=this,ax=this._gen_tile_cache_key(aq,aj,au),av=au*Q*ar,ag=av+Q*ar;var aw=(af?undefined:ap.tile_cache.get(ax));if(aw){ap.show_tile(aw,ai,aj);return aw}var am=function(ay){return("isResolved" in ay)};var ao=true;var at=ap.data_manager.get_data(av,ag,ap.mode,ar,ap.data_url_extra_params);if(am(at)){ao=false}var ak;if(view.reference_track&&aj>view.canvas_manager.char_width_px){ak=view.reference_track.data_manager.get_data(av,ag,ap.mode,ar,view.reference_track.data_url_extra_params);if(am(ak)){ao=false}}if(ao){p(at,an);var aw=ap.draw_tile(at,ap.mode,ar,au,aj,ak);if(aw!==undefined){ap.tile_cache.set(ax,aw);ap.show_tile(aw,ai,aj)}return aw}var ah=$.Deferred();$.when(at,ak).then(function(){view.request_redraw(false,false,false,ap);ah.resolve()});return ah},draw_tile:function(af,aj,ai,ag,ak,ah){console.log("Warning: TiledTrack.draw_tile() not implemented.")},show_tile:function(ah,aj,ak){var ag=this,af=ah.html_elt;ah.predisplay_actions();var ai=(ah.low-(this.is_overview?this.view.max_low:this.view.low))*ak;if(this.left_offset){ai-=this.left_offset}af.css({position:"absolute",top:0,left:ai,height:""});if(af.hasClass("remove")){af.removeClass("remove")}else{aj.append(af)}ag.max_height=Math.max(ag.max_height,af.height());ag.content_div.css("height",ag.max_height+"px");aj.children().css("height",ag.max_height+"px")},_get_tile_bounds:function(af,ag){var ai=af*Q*ag,aj=Q*ag,ah=(ai+aj<=this.view.max_high?ai+aj:this.view.max_high);return[ai,ah]},tool_region_and_parameters_str:function(ah,af,ai){var ag=this,aj=(ah!==undefined&&af!==undefined&&ai!==undefined?ah+":"+af+"-"+ai:"all");return" - region=["+aj+"], parameters=["+ag.tool.get_param_values().join(", ")+"]"},init_for_tool_data:function(){this.data_url=raw_data_url;this.data_query_wait=1000;this.dataset_check_url=dataset_state_url;this.predraw_init=function(){var ag=this;var af=function(){if(ag.data_manager.size()===0){setTimeout(af,300)}else{ag.data_url=default_data_url;ag.data_query_wait=K;ag.dataset_state_url=converted_datasets_state_url;$.getJSON(ag.dataset_state_url,{dataset_id:ag.dataset_id,hda_ldda:ag.hda_ldda},function(ah){})}};af()}}});var ab=function(ag,af){i.call(this,"label",ag,af,false,{});this.container_div.addClass("label-track")};p(ab.prototype,i.prototype,{build_header_div:function(){},init:function(){this.enabled=true},_draw:function(){var ah=this.view,ai=ah.high-ah.low,al=Math.floor(Math.pow(10,Math.floor(Math.log(ai)/Math.log(10)))),af=Math.floor(ah.low/al)*al,aj=this.view.container.width(),ag=$("<div style='position: relative; height: 1.3em;'></div>");while(af<ah.high){var ak=(af-ah.low)/ai*aj;ag.append($("<div class='label'>"+commatize(af)+"</div>").css({position:"absolute",left:ak-1}));af+=al}this.content_div.children(":first").remove();this.content_div.append(ag)}});var h=function(ai,ah,ag,af){this.display_modes=["Histogram","Line","Filled","Intensity"];M.call(this,ai,ah,ag);this.drawables=[];if(af){var al=[],ak;for(var aj=0;aj<af.length;aj++){ak=af[aj];al.push(ak.dataset_id);this.drawables[aj]=ak.copy()}this.enabled=true}this.update_icons();this.obj_type="CompositeTrack"};p(h.prototype,M.prototype,{to_dict:x.prototype.to_dict,add_drawable:x.prototype.add_drawable,from_dict:function(al,af){var ak=new this.constructor(al.name,view,af,al.prefs,view.viewport_container,view);var ag,aj,ai;for(var ah=0;ah<al.drawables.length;ah++){ag=al.drawables[ah];aj=ag.obj_type;if(!aj){aj=ag.track_type}ai=addable_objects[aj].prototype.from_dict(ag);ak.add_drawable(ai)}return ak},change_mode:function(af){M.prototype.change_mode.call(this,af);for(var ag=0;ag<this.drawables.length;ag++){this.drawables[ag].change_mode(af)}},init:function(){this.enabled=true;this.request_draw()},update_icons:function(){this.action_icons.filters_icon.hide();this.action_icons.tools_icon.hide()},can_draw:q.prototype.can_draw,draw_helper:function(ag,av,ay,aw,aj,an,ao,aq){var aD=this._gen_tile_cache_key(av,an,ay),aC=(ag?undefined:this.tile_cache.get(aD));if(aC){this.show_tile(aC,aj,an);return aC}var ah,ak=$("<div/>"),al,aA=[],at=[],ai=true;for(var ax=0;ax<this.drawables.length;ax++){al=this.drawables[ax].draw_helper(ag,av,ay,aw,ak,an,ao,aq);if(al instanceof b){aA.push(al)}else{at.push(al);ai=false}}if(ai){var am=aA[0].html_elt.find("canvas"),aB=am.clone(),ar=am.get(0).getContext("2d"),ap=aB.get(0).getContext("2d"),az=ar.getImageData(0,0,ar.canvas.width,ar.canvas.height);ap.putImageData(az,0,0);ap.globalCompositeOperation="darker";var af;for(var ax=1;ax<aA.length;ax++){af=aA[ax].html_elt.find("canvas").get(0);ap.drawImage(af,0,0)}aC=new b(this,ay,aw,aB);this.tile_cache.set(aD,aC);this.show_tile(aC,aj,an)}else{var au=this;$.when.apply($,at).then(function(){au.request_draw()})}return aC}});var z=function(af){M.call(this,"reference",af,{content_div:af.top_labeltrack},{});af.reference_track=this;this.left_offset=200;this.height_px=12;this.container_div.addClass("reference-track");this.content_div.css("background","none");this.content_div.css("min-height","0px");this.content_div.css("border","none");this.data_url=reference_url;this.data_url_extra_params={dbkey:af.dbkey};this.data_manager=new G(H,this,false)};p(z.prototype,q.prototype,M.prototype,{build_header_div:function(){},init:function(){this.enabled=true},can_draw:q.prototype.can_draw,draw_tile:function(ap,al,ak,ag,aq){var aj=this,ah=Q*ak;if(aq>this.view.canvas_manager.char_width_px){if(ap.data===null){aj.content_div.css("height","0px");return}var ai=this.view.canvas_manager.new_canvas();var ao=ai.getContext("2d");ai.width=Math.ceil(ah*aq+aj.left_offset);ai.height=aj.height_px;ao.font=ao.canvas.manager.default_font;ao.textAlign="center";ap=ap.data;for(var am=0,an=ap.length;am<an;am++){var af=Math.round(am*aq);ao.fillText(ap[am],af+aj.left_offset,10)}return new b(aj,ag,ak,ai,ap)}this.content_div.css("height","0px")}});var j=function(af,am,ag,al,ao,an,aj,ak,ah){var ai=this;this.display_modes=["Histogram","Line","Filled","Intensity"];this.mode="Histogram";M.call(this,af,am,ag,an,aj,ak,ah);this.min_height_px=16;this.max_height_px=400;this.height_px=32;this.hda_ldda=al;this.dataset_id=ao;this.original_dataset_id=ao;this.left_offset=0;this.config=new E({track:this,params:[{key:"name",label:"Name",type:"text",default_value:af},{key:"color",label:"Color",type:"color",default_value:get_random_color()},{key:"min_value",label:"Min Value",type:"float",default_value:undefined},{key:"max_value",label:"Max Value",type:"float",default_value:undefined},{key:"mode",type:"string",default_value:this.mode,hidden:true},{key:"height",type:"int",default_value:this.height_px,hidden:true}],saved_values:an,onchange:function(){ai.set_name(ai.prefs.name);ai.vertical_range=ai.prefs.max_value-ai.prefs.min_value;$("#linetrack_"+ai.dataset_id+"_minval").text(ai.prefs.min_value);$("#linetrack_"+ai.dataset_id+"_maxval").text(ai.prefs.max_value);ai.tile_cache.clear();ai.request_draw()}});this.prefs=this.config.values;this.height_px=this.config.values.height;this.vertical_range=this.config.values.max_value-this.config.values.min_value;this.add_resize_handle()};p(j.prototype,q.prototype,M.prototype,{add_resize_handle:function(){var af=this;var ai=false;var ah=false;var ag=$("<div class='track-resize'>");$(af.container_div).hover(function(){if(af.content_visible){ai=true;ag.show()}},function(){ai=false;if(!ah){ag.hide()}});ag.hide().bind("dragstart",function(aj,ak){ah=true;ak.original_height=$(af.content_div).height()}).bind("drag",function(ak,al){var aj=Math.min(Math.max(al.original_height+al.deltaY,af.min_height_px),af.max_height_px);$(af.content_div).css("height",aj);af.height_px=aj;af.request_draw(true)}).bind("dragend",function(aj,ak){af.tile_cache.clear();ah=false;if(!ai){ag.hide()}af.config.values.height=af.height_px}).appendTo(af.container_div)},predraw_init:function(){var af=this;af.vertical_range=undefined;return $.getJSON(af.data_url,{stats:true,chrom:af.view.chrom,low:null,high:null,hda_ldda:af.hda_ldda,dataset_id:af.dataset_id},function(ag){af.container_div.addClass("line-track");var aj=ag.data;if(isNaN(parseFloat(af.prefs.min_value))||isNaN(parseFloat(af.prefs.max_value))){var ah=aj.min;var al=aj.max;ah=Math.floor(Math.min(0,Math.max(ah,aj.mean-2*aj.sd)));al=Math.ceil(Math.max(0,Math.min(al,aj.mean+2*aj.sd)));af.prefs.min_value=ah;af.prefs.max_value=al;$("#track_"+af.dataset_id+"_minval").val(af.prefs.min_value);$("#track_"+af.dataset_id+"_maxval").val(af.prefs.max_value)}af.vertical_range=af.prefs.max_value-af.prefs.min_value;af.total_frequency=aj.total_frequency;af.container_div.find(".yaxislabel").remove();var ak=$("<div />").addClass("yaxislabel").attr("id","linetrack_"+af.dataset_id+"_minval").text(Z(af.prefs.min_value,3));var ai=$("<div />").addClass("yaxislabel").attr("id","linetrack_"+af.dataset_id+"_maxval").text(Z(af.prefs.max_value,3));ai.css({position:"absolute",top:"24px",left:"10px"});ai.prependTo(af.container_div);ak.css({position:"absolute",bottom:"2px",left:"10px"});ak.prependTo(af.container_div)})},draw_tile:function(ar,ak,aj,ah,aq){if(this.vertical_range===undefined){return}var af=this._get_tile_bounds(ah,aj),al=af[0],ap=af[1],ag=Math.ceil((ap-al)*aq),an=this.height_px;var ai=this.view.canvas_manager.new_canvas();ai.width=ag,ai.height=an;var ao=ai.getContext("2d");var am=new L.LinePainter(ar.data,al,ap,this.prefs,ak);am.draw(ao,ag,an);return new b(this.track,ah,aj,ai,ar.data)}});var d=function(af,am,ag,al,ao,an,aj,ak,ah){var ai=this;this.display_modes=["Auto","Histogram","Dense","Squish","Pack"];M.call(this,af,am,ag,an,aj,ak,ah);this.config=new E({track:this,params:[{key:"name",label:"Name",type:"text",default_value:af},{key:"block_color",label:"Block color",type:"color",default_value:get_random_color()},{key:"label_color",label:"Label color",type:"color",default_value:"black"},{key:"show_counts",label:"Show summary counts",type:"bool",default_value:true,help:"Show the number of items in each bin when drawing summary histogram"},{key:"connector_style",label:"Connector style",type:"select",default_value:"fishbones",options:[{label:"Line with arrows",value:"fishbone"},{label:"Arcs",value:"arcs"}]},{key:"mode",type:"string",default_value:this.mode,hidden:true},],saved_values:an,onchange:function(){ai.set_name(ai.prefs.name);ai.tile_cache.clear();ai.set_painter_from_config();ai.request_draw()}});this.prefs=this.config.values;this.height_px=0;this.container_div.addClass("feature-track");this.hda_ldda=al;this.dataset_id=ao;this.original_dataset_id=ao;this.show_labels_scale=0.001;this.showing_details=false;this.summary_draw_height=30;this.inc_slots={};this.start_end_dct={};this.left_offset=200;this.set_painter_from_config()};p(d.prototype,q.prototype,M.prototype,{set_painter_from_config:function(){if(this.config.values.connector_style=="arcs"){this.painter=L.ArcLinkedFeaturePainter}else{this.painter=L.LinkedFeaturePainter}},postdraw_actions:function(at,an,aj,ah){M.prototype.postdraw_actions.call(this,at,ah);var am=this;if(ah){var ax=am.content_div.children();var aw=false;for(var ap=ax.length-1,aq=0;ap>=aq;ap--){var ai=$(ax[ap]);if(aw){ai.remove()}else{if(ai.children().length!==0){aw=true}}}}if(am.mode=="Histogram"){var ag=-1;for(var ap=0;ap<at.length;ap++){var ao=at[ap].max_val;if(ao>ag){ag=ao}}for(var ap=0;ap<at.length;ap++){var av=at[ap];if(av.max_val!==ag){av.html_elt.remove();am.draw_helper(true,an,av.index,av.resolution,av.html_elt.parent(),aj,[],{max:ag})}}}if(am.filters_manager){var ak=am.filters_manager.filters;for(var ar=0;ar<ak.length;ar++){ak[ar].update_ui_elt()}var au=false,af,al;for(var ap=0;ap<at.length;ap++){if(at[ap].data.length){af=at[ap].data[0];for(var ar=0;ar<ak.length;ar++){al=ak[ar];if(al.applies_to(af)&&al.min!==al.max){au=true;break}}}}if(am.filters_available!==au){am.filters_available=au;if(!am.filters_available){am.filters_div.hide()}am.update_icons()}}},update_auto_mode:function(af){var af;if(this.mode=="Auto"){if(af=="no_detail"){af="feature spans"}else{if(af=="summary_tree"){af="coverage histogram"}}this.action_icons.mode_icon.attr("title","Set display mode (now: Auto/"+af+")")}},incremental_slots:function(aj,ag,ai){var ah=this.view.canvas_manager.dummy_context,af=this.inc_slots[aj];if(!af||(af.mode!==ai)){af=new (s.FeatureSlotter)(aj,ai==="Pack",y,function(ak){return ah.measureText(ak)});af.mode=ai;this.inc_slots[aj]=af}return af.slot_features(ag)},get_summary_tree_data:function(aj,am,ah,av){if(av>ah-am){av=ah-am}var aq=Math.floor((ah-am)/av),au=[],ai=0;var ak=0,al=0,ap,at=0,an=[],ar,ao;var ag=function(ay,ax,az,aw){ay[0]=ax+az*aw;ay[1]=ax+(az+1)*aw};while(at<av&&ak!==aj.length){var af=false;for(;at<av&&!af;at++){ag(an,am,at,aq);for(al=ak;al<aj.length;al++){ap=aj[al].slice(1,3);if(is_overlap(ap,an)){af=true;break}}if(af){break}}data_start_index=al;au[au.length]=ar=[an[0],0];for(;al<aj.length;al++){ap=aj[al].slice(1,3);if(is_overlap(ap,an)){ar[1]++}else{break}}if(ar[1]>ai){ai=ar[1]}at++}return{max:ai,delta:aq,data:au}},draw_tile:function(au,ax,aB,aF,ap,ai){var ay=this,ak=ay._get_tile_bounds(aF,aB),aI=ak[0],ag=ak[1],aw=ag-aI,az=Math.ceil(aw*ap),aO=25,aj=this.left_offset,av,al;if(ax==="Auto"){if(au.dataset_type==="summary_tree"){ax=au.dataset_type}else{if(au.extra_info==="no_detail"||ay.is_overview){ax="no_detail"}else{var aN=au.data;if(this.view.high-this.view.low>I){ax="Squish"}else{ax="Pack"}}}this.update_auto_mode(ax)}if(ax==="summary_tree"||ax==="Histogram"){al=this.summary_draw_height;this.container_div.find(".yaxislabel").remove();var af=$("<div />").addClass("yaxislabel");af.text(au.max);af.css({position:"absolute",top:"24px",left:"10px",color:this.prefs.label_color});af.prependTo(this.container_div);var ah=this.view.canvas_manager.new_canvas();ah.width=az+aj;ah.height=al+T;if(au.dataset_type!="summary_tree"){var aq=this.get_summary_tree_data(au.data,aI,ag,200);if(au.max){aq.max=au.max}au=aq}var aK=new L.SummaryTreePainter(au,aI,ag,this.prefs);var aA=ah.getContext("2d");aA.translate(aj,T);aK.draw(aA,az,al);return new k(ay,aF,aB,ah,au.data,au.max)}var av,an=1;if(ax==="no_detail"||ax==="Squish"||ax==="Pack"){an=this.incremental_slots(ap,au.data,ax);av=this.inc_slots[ap].slots}var ao=[];if(au.data){var ar=this.filters_manager.filters;for(var aC=0,aE=au.data.length;aC<aE;aC++){var am=au.data[aC];var aD=false;var at;for(var aH=0,aM=ar.length;aH<aM;aH++){at=ar[aH];at.update_attrs(am);if(!at.keep(am)){aD=true;break}}if(!aD){ao.push(am)}}}var aL=(this.filters_manager.alpha_filter?new B(this.filters_manager.alpha_filter):null);var aJ=(this.filters_manager.height_filter?new B(this.filters_manager.height_filter):null);var aK=new (this.painter)(ao,aI,ag,this.prefs,ax,aL,aJ,ai);var al=Math.max(ad,aK.get_required_height(an,az));var ah=this.view.canvas_manager.new_canvas();var aG=null;ah.width=az+aj;ah.height=al;var aA=ah.getContext("2d");aA.fillStyle=this.prefs.block_color;aA.font=aA.canvas.manager.default_font;aA.textAlign="right";this.container_div.find(".yaxislabel").remove();if(au.data){aA.translate(aj,0);aG=aK.draw(aA,az,al,av);aG.translation=-aj}return new O(ay,aF,aB,ah,au.data,ax,au.message,aG)}});var U=function(af,al,ag,ak,an,am,ai,aj,ah){d.call(this,af,al,ag,ak,an,am,ai,aj,ah);this.config=new E({track:this,params:[{key:"name",label:"Name",type:"text",default_value:af},{key:"block_color",label:"Block color",type:"color",default_value:get_random_color()},{key:"label_color",label:"Label color",type:"color",default_value:"black"},{key:"show_insertions",label:"Show insertions",type:"bool",default_value:false},{key:"show_counts",label:"Show summary counts",type:"bool",default_value:true},{key:"mode",type:"string",default_value:this.mode,hidden:true},],saved_values:am,onchange:function(){this.track.set_name(this.track.prefs.name);this.track.tile_cache.clear();this.track.request_draw()}});this.prefs=this.config.values;this.painter=L.ReadPainter};p(U.prototype,q.prototype,M.prototype,d.prototype);var W=function(af,al,ag,ak,ao,an,ai,ah){d.call(this,af,al,ag,ak,ao,an,ai,ah);var aj=get_random_color(),am=get_random_color([aj,"#ffffff"]);this.config=new E({track:this,params:[{key:"name",label:"Name",type:"text",default_value:af},{key:"block_color",label:"Block and sense strand color",type:"color",default_value:aj},{key:"reverse_strand_color",label:"Antisense strand color",type:"color",default_value:am},{key:"label_color",label:"Label color",type:"color",default_value:"black"},{key:"show_insertions",label:"Show insertions",type:"bool",default_value:false},{key:"show_differences",label:"Show differences only",type:"bool",default_value:true},{key:"show_counts",label:"Show summary counts",type:"bool",default_value:true},{key:"mode",type:"string",default_value:this.mode,hidden:true},],saved_values:an,onchange:function(){this.track.set_name(this.track.prefs.name);this.track.tile_cache.clear();this.track.request_draw()}});this.prefs=this.config.values;this.painter=L.ReadPainter;this.update_icons()};p(W.prototype,q.prototype,M.prototype,d.prototype);X.View=ac;X.DrawableGroup=P;X.LineTrack=j;X.FeatureTrack=d;X.ReadTrack=W;X.VcfTrack=U;X.CompositeTrack=h};var slotting_module=function(c,b){var e=c("class").extend;var d=2,a=5;b.FeatureSlotter=function(i,h,f,g){this.slots={};this.start_end_dct={};this.w_scale=i;this.include_label=h;this.max_rows=f;this.measureText=g};e(b.FeatureSlotter.prototype,{slot_features:function(m){var p=this.w_scale,s=this.slots,h=this.start_end_dct,y=[],A=[],n=0,z=this.max_rows;for(var w=0,x=m.length;w<x;w++){var l=m[w],o=l[0];if(s[o]!==undefined){n=Math.max(n,s[o]);A.push(s[o])}else{y.push(w)}}var q=function(F,G){for(var E=0;E<=z;E++){var C=false,H=h[E];if(H!==undefined){for(var B=0,D=H.length;B<D;B++){var i=H[B];if(G>i[0]&&F<i[1]){C=true;break}}}if(!C){return E}}return -1};for(var w=0,x=y.length;w<x;w++){var l=m[y[w]],o=l[0],u=l[1],f=l[2],r=l[3],g=Math.floor(u*p),k=Math.ceil(f*p),v=this.measureText(r).width,j;if(r!==undefined&&this.include_label){v+=(d+a);if(g-v>=0){g-=v;j="left"}else{k+=v;j="right"}}var t=q(g,k);if(t>=0){if(h[t]===undefined){h[t]=[]}h[t].push([g,k]);s[o]=t;n=Math.max(n,t)}else{}}return n+1}})};var painters_module=function(i,x){var u=i("class").extend;var p=function(I,A,G,z,F,D){if(D===undefined){D=4}var C=z-A;var B=F-G;var E=Math.floor(Math.sqrt(C*C+B*B)/D);var J=C/E;var H=B/E;var y;for(y=0;y<E;y++,A+=J,G+=H){if(y%2!==0){continue}I.fillRect(A,G,D,1)}};var q=function(B,A,z,E){var D=A-E/2,C=A+E/2,F=z-Math.sqrt(E*3/2);B.beginPath();B.moveTo(D,F);B.lineTo(C,F);B.lineTo(A,z);B.lineTo(D,F);B.strokeStyle=this.fillStyle;B.fill();B.stroke();B.closePath()};var d=function(y){this.default_val=(y?y:1)};d.prototype.gen_val=function(y){return this.default_val};var l=function(A,C,y,z,B){this.data=A;this.view_start=C;this.view_end=y;this.prefs=u({},this.default_prefs,z);this.mode=B};l.prototype.default_prefs={};var v=function(A,C,y,z,B){l.call(this,A,C,y,z,B)};v.prototype.default_prefs={show_counts:false};v.prototype.draw=function(M,z,L){var E=this.view_start,O=this.view_end-this.view_start,N=z/O;var J=this.data.data,I=this.data.delta,G=this.data.max,B=L;delta_x_px=Math.ceil(I*N);M.save();for(var C=0,D=J.length;C<D;C++){var H=Math.floor((J[C][0]-E)*N);var F=J[C][1];if(!F){continue}var K=F/G*L;if(F!==0&&K<1){K=1}M.fillStyle=this.prefs.block_color;M.fillRect(H,B-K,delta_x_px,K);var 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ag={};n[af.attr("id")]=ai;af.bind("drag",{handle:"."+ah,relative:true},function(ar,at){var aq=$(this);var aw=$(this).parent(),an=aw.children(),ap=n[$(this).attr("id")],am,al,au,ak,ao;al=$(this).parents(aj);if(al.length!==0){au=al.position().top;ak=au+al.outerHeight();if(at.offsetY<au){$(this).insertBefore(al);var av=n[al.attr("id")];av.remove_drawable(ap);av.container.add_drawable_before(ap,av);return}else{if(at.offsetY>ak){$(this).insertAfter(al);var av=n[al.attr("id")];av.remove_drawable(ap);av.container.add_drawable(ap);return}}}al=null;for(ao=0;ao<an.length;ao++){am=$(an.get(ao));au=am.position().top;ak=au+am.outerHeight();if(am.is(aj)&&this!==am.get(0)&&at.offsetY>=au&&at.offsetY<=ak){if(at.offsetY-au<ak-at.offsetY){am.find(".content-div").prepend(this)}else{am.find(".content-div").append(this)}if(ap.container){ap.container.remove_drawable(ap)}n[am.attr("id")].add_drawable(ap);return}}for(ao=0;ao<an.length;ao++){if(at.offsetY<$(an.get(ao)).position().top){break}}if(ao===an.length){if(this!==an.get(ao-1)){aw.append(this);n[aw.attr("id")].move_drawable(ap,ao)}}else{if(this!==an.get(ao)){$(this).insertBefore(an.get(ao));n[aw.attr("id")].move_drawable(ap,(at.deltaY>0?ao-1:ao))}}}).bind("dragstart",function(){ag["border-top"]=af.css("border-top");ag["border-bottom"]=af.css("border-bottom");$(this).css({"border-top":"1px solid blue","border-bottom":"1px solid blue"})}).bind("dragend",function(){$(this).css(ag)})};X.moveable=m;var ad=16,F=9,C=20,T=F+2,y=100,I=12000,Q=200,A=5,u=10,K=5000,v=100,o="There was an error in indexing this dataset. ",J="A converter for this dataset is not installed. Please check your datatypes_conf.xml file.",D="No data for this chrom/contig.",t="Currently indexing... please wait",w="Tool cannot be rerun: ",a="Loading data...",Y="Ready for display",R=10,H=20;function Z(ag,af){if(!af){af=0}var ah=Math.pow(10,af);return Math.round(ag*ah)/ah}var c=function(af){this.num_elements=af;this.clear()};p(c.prototype,{get:function(ag){var af=this.key_ary.indexOf(ag);if(af!==-1){if(this.obj_cache[ag].stale){this.key_ary.splice(af,1);delete this.obj_cache[ag]}else{this.move_key_to_end(ag,af)}}return this.obj_cache[ag]},set:function(ag,ah){if(!this.obj_cache[ag]){if(this.key_ary.length>=this.num_elements){var af=this.key_ary.shift();delete this.obj_cache[af]}this.key_ary.push(ag)}this.obj_cache[ag]=ah;return ah},move_key_to_end:function(ag,af){this.key_ary.splice(af,1);this.key_ary.push(ag)},clear:function(){this.obj_cache={};this.key_ary=[]},size:function(){return this.key_ary.length}});var S=function(ag,af,ah){c.call(this,ag);this.track=af;this.subset=(ah!==undefined?ah:true)};p(S.prototype,c.prototype,{load_data:function(ao,aj,am,ag,al){var an=this.track.view.chrom,ai={chrom:an,low:ao,high:aj,mode:am,resolution:ag,dataset_id:this.track.dataset_id,hda_ldda:this.track.hda_ldda};$.extend(ai,al);if(this.track.filters_manager){var ap=[];var af=this.track.filters_manager.filters;for(var ak=0;ak<af.length;ak++){ap[ap.length]=af[ak].name}ai.filter_cols=JSON.stringify(ap)}var ah=this;return $.getJSON(this.track.data_url,ai,function(aq){ah.set_data(ao,aj,aq)})},get_data:function(af,aj,ak,ag,ai){var ah=this.get(af,aj);if(ah&&(is_deferred(ah)||this.track.data_and_mode_compatible(ah,ak))){return ah}ah=this.load_data(af,aj,ak,ag,ai);this.set_data(af,aj,ah);return ah},DEEP_DATA_REQ:"deep",BROAD_DATA_REQ:"breadth",get_more_data:function(an,ai,am,ah,al,aj){var ao=this.get(an,ai);if(!(ao&&this.track.data_and_mode_compatible(ao,am))){console.log("ERROR: no current data for: ",this.track,an,ai,am,ah,al);return}ao.stale=true;var ag=an;if(aj===this.DEEP_DATA_REQ){$.extend(al,{start_val:ao.data.length+1})}else{if(aj===this.BROAD_DATA_REQ){ag=(ao.max_high?ao.max_high:ao.data[ao.data.length-1][2])+1}}var af=this,ak=this.load_data(ag,ai,am,ah,al);new_data_available=$.Deferred();this.set_data(an,ai,new_data_available);$.when(ak).then(function(ap){if(ap.data){ap.data=ao.data.concat(ap.data);if(ap.max_low){ap.max_low=ao.max_low}if(ap.message){ap.message=ap.message.replace(/[0-9]+/,ap.data.length)}}af.set_data(an,ai,ap);new_data_available.resolve(ap)});return new_data_available},get:function(af,ag){return c.prototype.get.call(this,this.gen_key(af,ag))},set_data:function(ag,ah,af){return this.set(this.gen_key(ag,ah),af)},gen_key:function(af,ah){var ag=af+"_"+ah;return ag},split_key:function(af){return af.split("_")}});var G=function(ag,af,ah){S.call(this,ag,af,ah)};p(G.prototype,S.prototype,c.prototype,{load_data:function(af,ai,aj,ag,ah){if(ag>1){return{data:null}}return S.prototype.load_data.call(this,af,ai,aj,ag,ah)}});var q=function(ai,ag,af,ah,ak){if(!q.id_counter){q.id_counter=0}this.id=q.id_counter++;this.name=ai;this.view=ag;this.container=af;this.config=new E({track:this,params:[{key:"name",label:"Name",type:"text",default_value:ai}],saved_values:ah,onchange:function(){this.track.set_name(this.track.config.values.name)}});this.prefs=this.config.values;this.drag_handle_class=ak;this.is_overview=false;this.action_icons={};this.content_visible=true;this.container_div=this.build_container_div();this.header_div=this.build_header_div();if(this.header_div){this.container_div.append(this.header_div);this.icons_div=$("<div/>").css("float","left").hide().appendTo(this.header_div);this.build_action_icons(this.action_icons_def);this.header_div.append($("<div style='clear: both'/>"));this.header_div.dblclick(function(al){al.stopPropagation()});var aj=this;this.container_div.hover(function(){aj.icons_div.show()},function(){aj.icons_div.hide()});$("<div style='clear: both'/>").appendTo(this.container_div)}};q.prototype.action_icons_def=[{name:"toggle_icon",title:"Hide/show content",css_class:"toggle",on_click_fn:function(af){if(af.content_visible){af.action_icons.toggle_icon.addClass("toggle-expand").removeClass("toggle");af.hide_contents();af.content_visible=false}else{af.action_icons.toggle_icon.addClass("toggle").removeClass("toggle-expand");af.content_visible=true;af.show_contents()}}},{name:"settings_icon",title:"Edit settings",css_class:"settings-icon",on_click_fn:function(ag){var ai=function(){hide_modal();$(window).unbind("keypress.check_enter_esc")},af=function(){ag.config.update_from_form($(".dialog-box"));hide_modal();$(window).unbind("keypress.check_enter_esc")},ah=function(aj){if((aj.keyCode||aj.which)===27){ai()}else{if((aj.keyCode||aj.which)===13){af()}}};$(window).bind("keypress.check_enter_esc",ah);show_modal("Configure",ag.config.build_form(),{Cancel:ai,OK:af})}},{name:"remove_icon",title:"Remove",css_class:"remove-icon",on_click_fn:function(af){$(".tipsy").remove();af.remove()}}];p(q.prototype,{init:function(){},can_draw:function(){if(this.enabled&&this.content_visible){return true}return false},request_draw:function(){},_draw:function(){},to_dict:function(){},from_dict:function(af){},update_icons:function(){},set_name:function(af){this.old_name=this.name;this.name=af;this.name_div.text(this.name)},revert_name:function(){this.name=this.old_name;this.name_div.text(this.name)},remove:function(){this.container.remove_drawable(this);this.container_div.hide(0,function(){$(this).remove();view.update_intro_div();view.has_changes=true})},build_container_div:function(){},build_header_div:function(){},add_action_icon:function(ag,ak,aj,ai,af){var ah=this;this.action_icons[ag]=$("<a/>").attr("href","javascript:void(0);").attr("title",ak).addClass("icon-button").addClass(aj).tipsy({gravity:"s"}).click(function(){ai(ah)}).appendTo(this.icons_div)},build_action_icons:function(af){var ah;for(var ag=0;ag<af.length;ag++){ah=af[ag];this.add_action_icon(ah.name,ah.title,ah.css_class,ah.on_click_fn,ah.prepend)}},update_icons:function(){},hide_contents:function(){},show_contents:function(){}});var x=function(aj,ai,ag,af,ah,ak){q.call(this,ai,ag,af,ah,ak);this.obj_type=aj;this.drawables=[]};p(x.prototype,q.prototype,{init:function(){for(var af=0;af<this.drawables.length;af++){this.drawables[af].init()}},_draw:function(){for(var af=0;af<this.drawables.length;af++){this.drawables[af]._draw()}},to_dict:function(){var ag=[];for(var af=0;af<this.drawables.length;af++){ag.push(this.drawables[af].to_dict())}return{name:this.name,prefs:this.prefs,obj_type:this.obj_type,drawables:ag}},from_dict:function(al,af){var ak=new this.constructor(al.name,view,af,al.prefs,view.viewport_container,view);var ag,aj,ai;for(var ah=0;ah<al.drawables.length;ah++){ag=al.drawables[ah];aj=ag.obj_type;if(!aj){aj=ag.track_type}ai=addable_objects[aj].prototype.from_dict(ag,ak);ak.add_drawable(ai)}return ak},add_drawable:function(af){this.drawables.push(af);af.container=this},add_drawable_before:function(ah,af){var ag=this.drawables.indexOf(af);if(ag!=-1){this.drawables.splice(ag,0,ah);return true}return false},replace_drawable:function(ah,af,ag){var ai=this.drawables.indexOf(ah);if(ai!==-1){this.drawables[ai]=af;if(ag){ah.container_div.replaceWith(af.container_div)}return true}return false},remove_drawable:function(ag){var af=this.drawables.indexOf(ag);if(af!=-1){this.drawables.splice(af,1);ag.container=null;return true}return false},move_drawable:function(ag,ah){var af=this.drawables.indexOf(ag);if(af!=-1){this.drawables.splice(af,1);this.drawables.splice(ah,0,ag);return true}return false}});var P=function(ai,ag,af,ah){x.call(this,"DrawableGroup",ai,ag,af,ah,"group-handle");this.content_div=$("<div/>").addClass("content-div").attr("id","group_"+this.id+"_content_div").appendTo(this.container_div);l(this.container_div,this);l(this.content_div,this);m(this.container_div,this.drag_handle_class,".group",this)};p(P.prototype,q.prototype,x.prototype,{action_icons_def:[{name:"composite_icon",title:"Show composite track",css_class:"layers-stack",on_click_fn:function(af){af.show_composite_track()}}].concat(q.prototype.action_icons_def),build_container_div:function(){var af=$("<div/>").addClass("group").attr("id","group_"+this.id);if(this.container){this.container.content_div.append(af)}return af},build_header_div:function(){var af=$("<div/>").addClass("track-header");af.append($("<div/>").addClass(this.drag_handle_class));this.name_div=$("<div/>").addClass("track-name").text(this.name).appendTo(af);return af},hide_contents:function(){this.content_div.hide()},show_contents:function(){this.content_div.show();this.request_draw()},update_icons:function(){var af=true,ah=this.drawables[0].get_type();for(var ag=0;ag<this.drawables.length;ag++){if(this.drawables[ag].get_type()!==ah){af=false;break}}if(af){this.action_icons.composite_icon.show()}else{this.action_icons.composite_icon.hide();$(".tipsy").remove()}},show_composite_track:function(){var af=new h("Composite Track",this.view,this,this.drawables);this.add_drawable(af);af.request_draw()},add_drawable:function(af){x.prototype.add_drawable.call(this,af);this.update_icons()},remove_drawable:function(af){x.prototype.remove_drawable.call(this,af);this.update_icons()},from_dict:function(ai,af){var ah=x.prototype.from_dict.call(this,ai,af);for(var ag=0;ag<ah.drawables.length;ag++){ah.content_div.append(ah.drawables[ag].container_div)}return ah}});var ac=function(af,ai,ah,ag){x.call(this,"View");this.container=af;this.chrom=null;this.vis_id=ah;this.dbkey=ag;this.title=ai;this.label_tracks=[];this.tracks_to_be_redrawn=[];this.max_low=0;this.max_high=0;this.zoom_factor=3;this.min_separation=30;this.has_changes=false;this.load_chroms_deferred=null;this.init();this.canvas_manager=new ae(af.get(0).ownerDocument);this.reset()};p(ac.prototype,x.prototype,{init:function(){var ah=this.container,af=this;this.top_container=$("<div/>").addClass("top-container").appendTo(ah);this.browser_content_div=$("<div/>").addClass("content").css("position","relative").appendTo(ah);this.bottom_container=$("<div/>").addClass("bottom-container").appendTo(ah);this.top_labeltrack=$("<div/>").addClass("top-labeltrack").appendTo(this.top_container);this.viewport_container=$("<div/>").addClass("viewport-container").attr("id","viewport-container").appendTo(this.browser_content_div);this.content_div=this.viewport_container;l(this.viewport_container,af);this.intro_div=$("<div/>").addClass("intro").appendTo(this.viewport_container).hide();var ai=$("<div/>").text("Add Datasets to Visualization").addClass("action-button").appendTo(this.intro_div).click(function(){add_tracks()});this.nav_labeltrack=$("<div/>").addClass("nav-labeltrack").appendTo(this.bottom_container);this.nav_container=$("<div/>").addClass("nav-container").prependTo(this.top_container);this.nav=$("<div/>").addClass("nav").appendTo(this.nav_container);this.overview=$("<div/>").addClass("overview").appendTo(this.bottom_container);this.overview_viewport=$("<div/>").addClass("overview-viewport").appendTo(this.overview);this.overview_close=$("<a/>").attr("href","javascript:void(0);").attr("title","Close overview").addClass("icon-button overview-close tooltip").hide().appendTo(this.overview_viewport);this.overview_highlight=$("<div/>").addClass("overview-highlight").hide().appendTo(this.overview_viewport);this.overview_box_background=$("<div/>").addClass("overview-boxback").appendTo(this.overview_viewport);this.overview_box=$("<div/>").addClass("overview-box").appendTo(this.overview_viewport);this.default_overview_height=this.overview_box.height();this.nav_controls=$("<div/>").addClass("nav-controls").appendTo(this.nav);this.chrom_select=$("<select/>").attr({name:"chrom"}).css("width","15em").addClass("no-autocomplete").append("<option value=''>Loading</option>").appendTo(this.nav_controls);var ag=function(aj){if(aj.type==="focusout"||(aj.keyCode||aj.which)===13||(aj.keyCode||aj.which)===27){if((aj.keyCode||aj.which)!==27){af.go_to($(this).val())}$(this).hide();$(this).val("");af.location_span.show();af.chrom_select.show()}};this.nav_input=$("<input/>").addClass("nav-input").hide().bind("keyup focusout",ag).appendTo(this.nav_controls);this.location_span=$("<span/>").addClass("location").attr("original-title","Click to change location").tipsy({gravity:"n"}).appendTo(this.nav_controls);this.location_span.click(function(){af.location_span.hide();af.chrom_select.hide();af.nav_input.val(af.chrom+":"+af.low+"-"+af.high);af.nav_input.css("display","inline-block");af.nav_input.select();af.nav_input.focus()});if(this.vis_id!==undefined){this.hidden_input=$("<input/>").attr("type","hidden").val(this.vis_id).appendTo(this.nav_controls)}this.zo_link=$("<a/>").attr("id","zoom-out").attr("title","Zoom out").tipsy({gravity:"n"}).click(function(){af.zoom_out();af.request_redraw()}).appendTo(this.nav_controls);this.zi_link=$("<a/>").attr("id","zoom-in").attr("title","Zoom in").tipsy({gravity:"n"}).click(function(){af.zoom_in();af.request_redraw()}).appendTo(this.nav_controls);this.load_chroms_deferred=this.load_chroms({low:0});this.chrom_select.bind("change",function(){af.change_chrom(af.chrom_select.val())});this.browser_content_div.click(function(aj){$(this).find("input").trigger("blur")});this.browser_content_div.bind("dblclick",function(aj){af.zoom_in(aj.pageX,this.viewport_container)});this.overview_box.bind("dragstart",function(aj,ak){this.current_x=ak.offsetX}).bind("drag",function(aj,al){var am=al.offsetX-this.current_x;this.current_x=al.offsetX;var ak=Math.round(am/af.viewport_container.width()*(af.max_high-af.max_low));af.move_delta(-ak)});this.overview_close.click(function(){af.reset_overview()});this.viewport_container.bind("draginit",function(aj,ak){if(aj.clientX>af.viewport_container.width()-16){return false}}).bind("dragstart",function(aj,ak){ak.original_low=af.low;ak.current_height=aj.clientY;ak.current_x=ak.offsetX}).bind("drag",function(al,an){var aj=$(this);var ao=an.offsetX-an.current_x;var ak=aj.scrollTop()-(al.clientY-an.current_height);aj.scrollTop(ak);an.current_height=al.clientY;an.current_x=an.offsetX;var am=Math.round(ao/af.viewport_container.width()*(af.high-af.low));af.move_delta(am)}).bind("mousewheel",function(al,an,ak,aj){if(ak){ak*=50;var am=Math.round(-ak/af.viewport_container.width()*(af.high-af.low));af.move_delta(am)}});this.top_labeltrack.bind("dragstart",function(aj,ak){return $("<div />").css({height:af.browser_content_div.height()+af.top_labeltrack.height()+af.nav_labeltrack.height()+1,top:"0px",position:"absolute","background-color":"#ccf",opacity:0.5,"z-index":1000}).appendTo($(this))}).bind("drag",function(an,ao){$(ao.proxy).css({left:Math.min(an.pageX,ao.startX),width:Math.abs(an.pageX-ao.startX)});var ak=Math.min(an.pageX,ao.startX)-af.container.offset().left,aj=Math.max(an.pageX,ao.startX)-af.container.offset().left,am=(af.high-af.low),al=af.viewport_container.width();af.update_location(Math.round(ak/al*am)+af.low,Math.round(aj/al*am)+af.low)}).bind("dragend",function(ao,ap){var ak=Math.min(ao.pageX,ap.startX),aj=Math.max(ao.pageX,ap.startX),am=(af.high-af.low),al=af.viewport_container.width(),an=af.low;af.low=Math.round(ak/al*am)+an;af.high=Math.round(aj/al*am)+an;$(ap.proxy).remove();af.request_redraw()});this.add_label_track(new ab(this,{content_div:this.top_labeltrack}));this.add_label_track(new ab(this,{content_div:this.nav_labeltrack}));$(window).bind("resize",function(){af.resize_window()});$(document).bind("redraw",function(){af.redraw()});this.reset();$(window).trigger("resize")},update_intro_div:function(){if(this.drawables.length===0){this.intro_div.show()}else{this.intro_div.hide()}},update_location:function(af,ag){this.location_span.text(commatize(af)+" - "+commatize(ag));this.nav_input.val(this.chrom+":"+commatize(af)+"-"+commatize(ag))},load_chroms:function(ah){ah.num=v;ah.dbkey=this.dbkey;var af=this,ag=$.Deferred();$.ajax({url:chrom_url,data:ah,dataType:"json",success:function(aj){if(aj.chrom_info.length===0){alert("Invalid chromosome: "+ah.chrom);return}if(aj.reference){af.add_label_track(new z(af))}af.chrom_data=aj.chrom_info;var am='<option value="">Select Chrom/Contig</option>';for(var al=0,ai=af.chrom_data.length;al<ai;al++){var ak=af.chrom_data[al].chrom;am+='<option value="'+ak+'">'+ak+"</option>"}if(aj.prev_chroms){am+='<option value="previous">Previous '+v+"</option>"}if(aj.next_chroms){am+='<option value="next">Next '+v+"</option>"}af.chrom_select.html(am);af.chrom_start_index=aj.start_index;ag.resolve(aj)},error:function(){alert("Could not load chroms for this dbkey:",af.dbkey)}});return ag},change_chrom:function(ak,ag,am){if(!ak||ak==="None"){return}var ah=this;if(ak==="previous"){ah.load_chroms({low:this.chrom_start_index-v});return}if(ak==="next"){ah.load_chroms({low:this.chrom_start_index+v});return}var al=$.grep(ah.chrom_data,function(an,ao){return an.chrom===ak})[0];if(al===undefined){ah.load_chroms({chrom:ak},function(){ah.change_chrom(ak,ag,am)});return}else{if(ak!==ah.chrom){ah.chrom=ak;ah.chrom_select.val(ah.chrom);ah.max_high=al.len-1;ah.reset();ah.request_redraw(true);for(var aj=0,af=ah.drawables.length;aj<af;aj++){var ai=ah.drawables[aj];if(ai.init){ai.init()}}}if(ag!==undefined&&am!==undefined){ah.low=Math.max(ag,0);ah.high=Math.min(am,ah.max_high)}ah.reset_overview();ah.request_redraw()}},go_to:function(aj){aj=aj.replace(/ |,/g,"");var an=this,af,ai,ag=aj.split(":"),al=ag[0],am=ag[1];if(am!==undefined){try{var ak=am.split("-");af=parseInt(ak[0],10);ai=parseInt(ak[1],10)}catch(ah){return false}}an.change_chrom(al,af,ai)},move_fraction:function(ah){var af=this;var ag=af.high-af.low;this.move_delta(ah*ag)},move_delta:function(ah){var af=this;var ag=af.high-af.low;if(af.low-ah<af.max_low){af.low=af.max_low;af.high=af.max_low+ag}else{if(af.high-ah>af.max_high){af.high=af.max_high;af.low=af.max_high-ag}else{af.high-=ah;af.low-=ah}}af.request_redraw()},add_drawable:function(af){x.prototype.add_drawable.call(this,af);af.init();this.has_changes=true;this.update_intro_div()},add_label_track:function(af){af.view=this;af.init();this.label_tracks.push(af)},remove_drawable:function(ah,ag){x.prototype.remove_drawable.call(this,ah);if(ag){var af=this;ah.container_div.hide(0,function(){$(this).remove();af.update_intro_div()});this.has_changes=true}},reset:function(){this.low=this.max_low;this.high=this.max_high;this.viewport_container.find(".yaxislabel").remove()},request_redraw:function(an,af,am,ag){var al=this,aj=(ag?[ag]:al.drawables),ah;var ag;for(var ak=0;ak<aj.length;ak++){ag=aj[ak];ah=-1;for(var ai=0;ai<al.tracks_to_be_redrawn.length;ai++){if(al.tracks_to_be_redrawn[ai][0]===ag){ah=ai;break}}if(ah<0){al.tracks_to_be_redrawn.push([ag,af,am])}else{al.tracks_to_be_redrawn[ak][1]=af;al.tracks_to_be_redrawn[ak][2]=am}}requestAnimationFrame(function(){al._redraw(an)})},_redraw:function(ap){var am=this.low,ai=this.high;if(am<this.max_low){am=this.max_low}if(ai>this.max_high){ai=this.max_high}var ao=this.high-this.low;if(this.high!==0&&ao<this.min_separation){ai=am+this.min_separation}this.low=Math.floor(am);this.high=Math.ceil(ai);this.resolution=Math.pow(A,Math.ceil(Math.log((this.high-this.low)/Q)/Math.log(A)));this.zoom_res=Math.pow(u,Math.max(0,Math.ceil(Math.log(this.resolution,u)/Math.log(u))));var af=(this.low/(this.max_high-this.max_low)*this.overview_viewport.width())||0;var al=((this.high-this.low)/(this.max_high-this.max_low)*this.overview_viewport.width())||0;var aq=13;this.overview_box.css({left:af,width:Math.max(aq,al)}).show();if(al<aq){this.overview_box.css("left",af-(aq-al)/2)}if(this.overview_highlight){this.overview_highlight.css({left:af,width:al})}this.update_location(this.low,this.high);if(!ap){var ah,ag,an;for(var aj=0,ak=this.tracks_to_be_redrawn.length;aj<ak;aj++){ah=this.tracks_to_be_redrawn[aj][0];ag=this.tracks_to_be_redrawn[aj][1];an=this.tracks_to_be_redrawn[aj][2];if(ah){ah._draw(ag,an)}}this.tracks_to_be_redrawn=[];for(aj=0,ak=this.label_tracks.length;aj<ak;aj++){this.label_tracks[aj]._draw()}}},zoom_in:function(ag,ah){if(this.max_high===0||this.high-this.low<this.min_separation){return}var ai=this.high-this.low,aj=ai/2+this.low,af=(ai/this.zoom_factor)/2;if(ag){aj=ag/this.viewport_container.width()*(this.high-this.low)+this.low}this.low=Math.round(aj-af);this.high=Math.round(aj+af);this.request_redraw()},zoom_out:function(){if(this.max_high===0){return}var ag=this.high-this.low,ah=ag/2+this.low,af=(ag*this.zoom_factor)/2;this.low=Math.round(ah-af);this.high=Math.round(ah+af);this.request_redraw()},resize_window:function(){this.viewport_container.height(this.container.height()-this.top_container.height()-this.bottom_container.height());this.nav_container.width(this.container.width());this.request_redraw()},set_overview:function(ah){if(this.overview_drawable){if(this.overview_drawable.dataset_id===ah.dataset_id){return}this.overview_viewport.find(".track").remove()}var ag=ah.copy({content_div:this.overview_viewport}),af=this;ag.header_div.hide();ag.is_overview=true;af.overview_drawable=ag;this.overview_drawable.postdraw_actions=function(){af.overview_highlight.show().height(af.overview_drawable.content_div.height());af.overview_viewport.height(af.overview_drawable.content_div.height()+af.overview_box.outerHeight());af.overview_close.show();af.resize_window()};af.overview_drawable.request_draw();af.has_changes=true},reset_overview:function(){$(".tipsy").remove();this.overview_viewport.find(".track-tile").remove();this.overview_viewport.height(this.default_overview_height);this.overview_box.height(this.default_overview_height);this.overview_close.hide();this.overview_highlight.hide();view.resize_window();view.overview_drawable=null}});var r=function(ah,al){this.track=ah;this.name=al.name;this.params=[];var at=al.params;for(var ai=0;ai<at.length;ai++){var an=at[ai],ag=an.name,ar=an.label,aj=unescape(an.html),au=an.value,ap=an.type;if(ap==="number"){this.params[this.params.length]=new f(ag,ar,aj,au,an.min,an.max)}else{if(ap=="select"){this.params[this.params.length]=new N(ag,ar,aj,au)}else{console.log("WARNING: unrecognized tool parameter type:",ag,ap)}}}this.parent_div=$("<div/>").addClass("dynamic-tool").hide();this.parent_div.bind("drag",function(aw){aw.stopPropagation()}).click(function(aw){aw.stopPropagation()}).bind("dblclick",function(aw){aw.stopPropagation()});var aq=$("<div class='tool-name'>").appendTo(this.parent_div).text(this.name);var ao=this.params;var am=this;$.each(this.params,function(ax,aA){var az=$("<div>").addClass("param-row").appendTo(am.parent_div);var aw=$("<div>").addClass("param-label").text(aA.label).appendTo(az);var ay=$("<div/>").addClass("slider").html(aA.html).appendTo(az);ay.find(":input").val(aA.value);$("<div style='clear: both;'/>").appendTo(az)});this.parent_div.find("input").click(function(){$(this).select()});var av=$("<div>").addClass("param-row").appendTo(this.parent_div);var ak=$("<input type='submit'>").attr("value","Run on complete dataset").appendTo(av);var af=$("<input type='submit'>").attr("value","Run on visible region").css("margin-left","3em").appendTo(av);var am=this;af.click(function(){am.run_on_region()});ak.click(function(){am.run_on_dataset()})};p(r.prototype,{get_param_values_dict:function(){var af={};this.parent_div.find(":input").each(function(){var ag=$(this).attr("name"),ah=$(this).val();af[ag]=JSON.stringify(ah)});return af},get_param_values:function(){var ag=[];var af={};this.parent_div.find(":input").each(function(){var ah=$(this).attr("name"),ai=$(this).val();if(ah){ag[ag.length]=ai}});return ag},run_on_dataset:function(){var af=this;af.run({dataset_id:this.track.original_dataset_id,tool_id:af.name},null,function(ag){show_modal(af.name+" is Running",af.name+" is running on the complete dataset. Tool outputs are in dataset's history.",{Close:hide_modal})})},run_on_region:function(){var ag={dataset_id:this.track.original_dataset_id,chrom:this.track.view.chrom,low:this.track.view.low,high:this.track.view.high,tool_id:this.name},aj=this.track,ah=ag.tool_id+aj.tool_region_and_parameters_str(ag.chrom,ag.low,ag.high),af;if(aj.container===view){var ai=new P(this.name,this.track.view);aj.container.replace_drawable(aj,ai,true);aj.container.remove_drawable(aj);ai.add_drawable(aj);aj.container_div.appendTo(ai.content_div);af=ai}else{af=aj.container}var ak=new aj.constructor(ah,view,af,"hda");ak.init_for_tool_data();ak.change_mode(aj.mode);af.add_drawable(ak);ak.content_div.text("Starting job.");this.run(ag,ak,function(al){ak.dataset_id=al.dataset_id;ak.content_div.text("Running job.");ak.init()})},run:function(ag,ah,ai){$.extend(ag,this.get_param_values_dict());var af=function(){$.getJSON(rerun_tool_url,ag,function(aj){if(aj==="no converter"){ah.container_div.addClass("error");ah.content_div.text(J)}else{if(aj.error){ah.container_div.addClass("error");ah.content_div.text(w+aj.message)}else{if(aj==="pending"){ah.container_div.addClass("pending");ah.content_div.text("Converting input data so that it can be used quickly with tool.");setTimeout(af,2000)}else{ai(aj)}}}})};af()}});var N=function(ag,af,ah,ai){this.name=ag;this.label=af;this.html=ah;this.value=ai};var f=function(ah,ag,aj,ak,ai,af){N.call(this,ah,ag,aj,ak);this.min=ai;this.max=af};var g=function(ag,af,ah,ai){this.name=ag;this.index=af;this.tool_id=ah;this.tool_exp_name=ai};var V=function(ag,af,ah,ai){g.call(this,ag,af,ah,ai);this.low=-Number.MAX_VALUE;this.high=Number.MAX_VALUE;this.min=Number.MAX_VALUE;this.max=-Number.MAX_VALUE;this.container=null;this.slider=null;this.slider_label=null};p(V.prototype,{applies_to:function(af){if(af.length>this.index){return true}return false},keep:function(af){if(!this.applies_to(af)){return true}var ag=af[this.index];return(isNaN(ag)||(ag>=this.low&&ag<=this.high))},update_attrs:function(ag){var af=false;if(!this.applies_to(ag)){return af}if(ag[this.index]<this.min){this.min=Math.floor(ag[this.index]);af=true}if(ag[this.index]>this.max){this.max=Math.ceil(ag[this.index]);af=true}return af},update_ui_elt:function(){if(this.min!=this.max){this.container.show()}else{this.container.hide()}var ah=function(ak,ai){var aj=ai-ak;return(aj<=2?0.01:1)};var ag=this.slider.slider("option","min"),af=this.slider.slider("option","max");if(this.min<ag||this.max>af){this.slider.slider("option","min",this.min);this.slider.slider("option","max",this.max);this.slider.slider("option","step",ah(this.min,this.max));this.slider.slider("option","values",[this.min,this.max])}}});var aa=function(ah,aq){this.track=ah;this.filters=[];for(var al=0;al<aq.length;al++){var af=aq[al],ag=af.name,ap=af.type,an=af.index,at=af.tool_id,ai=af.tool_exp_name;if(ap==="int"||ap==="float"){this.filters[al]=new V(ag,an,at,ai)}else{console.log("ERROR: unsupported filter: ",ag,ap)}}var ao=function(au,av,aw){au.click(function(){var ax=av.text();max=parseFloat(aw.slider("option","max")),input_size=(max<=1?4:max<=1000000?max.toString().length:6),multi_value=false;if(aw.slider("option","values")){input_size=2*input_size+1;multi_value=true}av.text("");$("<input type='text'/>").attr("size",input_size).attr("maxlength",input_size).attr("value",ax).appendTo(av).focus().select().click(function(ay){ay.stopPropagation()}).blur(function(){$(this).remove();av.text(ax)}).keyup(function(aC){if(aC.keyCode===27){$(this).trigger("blur")}else{if(aC.keyCode===13){var aA=aw.slider("option","min"),ay=aw.slider("option","max"),aB=function(aD){return(isNaN(aD)||aD>ay||aD<aA)},az=$(this).val();if(!multi_value){az=parseFloat(az);if(aB(az)){alert("Parameter value must be in the range ["+aA+"-"+ay+"]");return $(this)}}else{az=az.split("-");az=[parseFloat(az[0]),parseFloat(az[1])];if(aB(az[0])||aB(az[1])){alert("Parameter value must be in the range ["+aA+"-"+ay+"]");return $(this)}}aw.slider((multi_value?"values":"value"),az)}}})})};this.parent_div=$("<div/>").addClass("filters").hide();this.parent_div.bind("drag",function(au){au.stopPropagation()}).click(function(au){au.stopPropagation()}).bind("dblclick",function(au){au.stopPropagation()}).bind("keydown",function(au){au.stopPropagation()});var aj=this;$.each(this.filters,function(aA,av){av.container=$("<div/>").addClass("filter-row slider-row").appendTo(aj.parent_div);var au=$("<div/>").addClass("elt-label").appendTo(av.container);var aD=$("<span/>").addClass("slider-name").text(av.name+" ").appendTo(au);var aw=$("<span/>");var ax=$("<span/>").addClass("slider-value").appendTo(au).append("[").append(aw).append("]");var aC=$("<div/>").addClass("slider").appendTo(av.container);av.control_element=$("<div/>").attr("id",av.name+"-filter-control").appendTo(aC);var ay=[0,0];av.control_element.slider({range:true,min:Number.MAX_VALUE,max:-Number.MIN_VALUE,values:[0,0],slide:function(aG,aH){var aF=aH.values;aw.text(aF[0]+"-"+aF[1]);av.low=aF[0];av.high=aF[1];aj.track.request_draw(true,true)},change:function(aF,aG){av.control_element.slider("option","slide").call(av.control_element,aF,aG)}});av.slider=av.control_element;av.slider_label=aw;ao(ax,aw,av.control_element);var aE=$("<div/>").addClass("display-controls").appendTo(av.container),az=create_action_icon("Use filter for data transparency","layer-transparent",function(){if(aj.alpha_filter!==av){aj.alpha_filter=av;$(".layer-transparent").removeClass("active").hide();az.addClass("active").show()}else{aj.alpha_filter=null;az.removeClass("active")}aj.track.request_draw(true,true)}).appendTo(aE).hide(),aB=create_action_icon("Use filter for data height","arrow-resize-090",function(){if(aj.height_filter!==av){aj.height_filter=av;$(".arrow-resize-090").removeClass("active").hide();aB.addClass("active").show()}else{aj.height_filter=null;aB.removeClass("active")}aj.track.request_draw(true,true)}).appendTo(aE).hide();av.container.hover(function(){az.show();aB.show()},function(){if(aj.alpha_filter!==av){az.hide()}if(aj.height_filter!==av){aB.hide()}});$("<div style='clear: both;'/>").appendTo(av.container)});if(this.filters.length!==0){var ar=$("<div/>").addClass("param-row").appendTo(this.parent_div);var am=$("<input type='submit'/>").attr("value","Run on complete dataset").appendTo(ar);var ak=this;am.click(function(){ak.run_on_dataset()})}};p(aa.prototype,{reset_filters:function(){for(var af=0;af<this.filters.length;af++){filter=this.filters[af];filter.slider.slider("option","values",[filter.min,filter.max])}this.alpha_filter=null;this.height_filter=null},run_on_dataset:function(){var an=function(ar,ap,aq){if(!(ap in ar)){ar[ap]=aq}return ar[ap]};var ah={},af,ag,ai;for(var aj=0;aj<this.filters.length;aj++){af=this.filters[aj];if(af.tool_id){if(af.min!=af.low){ag=an(ah,af.tool_id,[]);ag[ag.length]=af.tool_exp_name+" >= "+af.low}if(af.max!=af.high){ag=an(ah,af.tool_id,[]);ag[ag.length]=af.tool_exp_name+" <= "+af.high}}}var al=[];for(var ao in ah){al[al.length]=[ao,ah[ao]]}var am=al.length;(function ak(aw,at){var aq=at[0],ar=aq[0],av=aq[1],au="("+av.join(") and (")+")",ap={cond:au,input:aw,target_dataset_id:aw,tool_id:ar},at=at.slice(1);$.getJSON(run_tool_url,ap,function(ax){if(ax.error){show_modal("Filter Dataset","Error running tool "+ar,{Close:hide_modal})}else{if(at.length===0){show_modal("Filtering Dataset","Filter(s) are running on the complete dataset. Outputs are in dataset's history.",{Close:hide_modal})}else{ak(ax.dataset_id,at)}}})})(this.track.dataset_id,al)}});var B=function(af,ag){L.Scaler.call(this,ag);this.filter=af};B.prototype.gen_val=function(af){if(this.filter.high===Number.MAX_VALUE||this.filter.low===-Number.MAX_VALUE||this.filter.low===this.filter.high){return this.default_val}return((parseFloat(af[this.filter.index])-this.filter.low)/(this.filter.high-this.filter.low))};var E=function(af){this.track=af.track;this.params=af.params;this.values={};this.restore_values((af.saved_values?af.saved_values:{}));this.onchange=af.onchange};p(E.prototype,{restore_values:function(af){var ag=this;$.each(this.params,function(ah,ai){if(af[ai.key]!==undefined){ag.values[ai.key]=af[ai.key]}else{ag.values[ai.key]=ai.default_value}})},build_form:function(){var ai=this;var af=$("<div />");var ah;function ag(am,aj){for(var ao=0;ao<am.length;ao++){ah=am[ao];if(ah.hidden){continue}var ak="param_"+ao;var at=ai.values[ah.key];var av=$("<div class='form-row' />").appendTo(aj);av.append($("<label />").attr("for",ak).text(ah.label+":"));if(ah.type==="bool"){av.append($('<input type="checkbox" />').attr("id",ak).attr("name",ak).attr("checked",at))}else{if(ah.type==="text"){av.append($('<input type="text"/>').attr("id",ak).val(at).click(function(){$(this).select()}))}else{if(ah.type=="select"){var aq=$("<select />").attr("id",ak);for(var an=0;an<ah.options.length;an++){$("<option/>").text(ah.options[an].label).attr("value",ah.options[an].value).appendTo(aq)}aq.val(at);av.append(aq)}else{if(ah.type==="color"){var ap=$("<input />").attr("id",ak).attr("name",ak).val(at);var ar=$("<div class='tipsy tipsy-west' style='position: absolute;' />").hide();var al=$("<div style='background-color: black; padding: 10px;'></div>").appendTo(ar);var au=$("<div/>").appendTo(al).farbtastic({width:100,height:100,callback:ap,color:at});$("<div />").append(ap).append(ar).appendTo(av).bind("click",function(aw){ar.css({left:$(this).position().left+$(ap).width()+5,top:$(this).position().top-($(ar).height()/2)+($(ap).height()/2)}).show();$(document).bind("click.color-picker",function(){ar.hide();$(document).unbind("click.color-picker")});aw.stopPropagation()})}else{av.append($("<input />").attr("id",ak).attr("name",ak).val(at))}}}}if(ah.help){av.append($("<div class='help'/>").text(ah.help))}}}ag(this.params,af);return af},update_from_form:function(af){var ah=this;var ag=false;$.each(this.params,function(ai,ak){if(!ak.hidden){var al="param_"+ai;var aj=af.find("#"+al).val();if(ak.type==="float"){aj=parseFloat(aj)}else{if(ak.type==="int"){aj=parseInt(aj)}else{if(ak.type==="bool"){aj=af.find("#"+al).is(":checked")}}}if(aj!==ah.values[ak.key]){ah.values[ak.key]=aj;ag=true}}});if(ag){this.onchange()}}});var b=function(af,ai,ah,ag,aj){this.track=af;this.index=ai;this.low=ai*Q*ah;this.high=(ai+1)*Q*ah;this.resolution=ah;this.html_elt=$("<div class='track-tile'/>").append(ag);this.data=aj;this.stale=false};b.prototype.predisplay_actions=function(){};var k=function(af,ai,ah,ag,aj,ak){b.call(this,af,ai,ah,ag,aj);this.max_val=ak};p(k.prototype,b.prototype);var O=function(ah,am,ai,ag,ak,al,aq,ao){b.call(this,ah,am,ai,ag,ak);this.mode=al;this.message=aq;this.feature_mapper=ao;if(this.message){var ag=this.html_elt.children()[0],ap=$("<div/>").addClass("tile-message").text(this.message).css({height:C-1,width:ag.width}).prependTo(this.html_elt),aj=$("<a href='javascript:void(0);'/>").addClass("icon more-down").appendTo(ap),af=$("<a href='javascript:void(0);'/>").addClass("icon more-across").appendTo(ap);var an=this;aj.click(function(){an.stale=true;ah.data_manager.get_more_data(an.low,an.high,ah.mode,an.resolution,{},ah.data_manager.DEEP_DATA_REQ);ah.request_draw()}).dblclick(function(ar){ar.stopPropagation()});af.click(function(){an.stale=true;ah.data_manager.get_more_data(an.low,an.high,ah.mode,an.resolution,{},ah.data_manager.BROAD_DATA_REQ);ah.request_draw()}).dblclick(function(ar){ar.stopPropagation()})}};p(O.prototype,b.prototype);O.prototype.predisplay_actions=function(){var ag=this,af={};if(ag.mode!=="Pack"){return}$(this.html_elt).hover(function(){this.hovered=true;$(this).mousemove()},function(){this.hovered=false;$(this).siblings(".feature-popup").remove()}).mousemove(function(ar){if(!this.hovered){return}var am=$(this).offset(),aq=ar.pageX-am.left,ap=ar.pageY-am.top,aw=ag.feature_mapper.get_feature_data(aq,ap),an=(aw?aw[0]:null);$(this).siblings(".feature-popup").each(function(){if(!an||$(this).attr("id")!==an.toString()){$(this).remove()}});if(aw){var ai=af[an];if(!ai){var an=aw[0],at={name:aw[3],start:aw[1],end:aw[2],strand:aw[4]},al=ag.track.filters_manager.filters,ak;for(var ao=0;ao<al.length;ao++){ak=al[ao];at[ak.name]=aw[ak.index]}var ai=$("<div/>").attr("id",an).addClass("feature-popup"),ax=$("<table/>"),av,au,ay;for(av in at){au=at[av];ay=$("<tr/>").appendTo(ax);$("<th/>").appendTo(ay).text(av);$("<td/>").attr("align","left").appendTo(ay).text(typeof(au)=="number"?Z(au,2):au)}ai.append($("<div class='feature-popup-inner'>").append(ax));af[an]=ai}ai.appendTo($(ag.html_elt).parent());var aj=aq+parseInt(ag.html_elt.css("left"))-ai.width()/2,ah=ap+parseInt(ag.html_elt.css("top"))+7;ai.css("left",aj+"px").css("top",ah+"px")}else{if(!ar.isPropagationStopped()){ar.stopPropagation();$(this).siblings().each(function(){$(this).trigger(ar)})}}}).mouseleave(function(){$(this).siblings(".feature-popup").remove()})};var i=function(ai,ag,af,ah,ak,aj,al){q.call(this,ai,ag,af,{},"draghandle");this.data_url=(aj?aj:default_data_url);this.data_url_extra_params={};this.data_query_wait=(al?al:K);this.dataset_check_url=converted_datasets_state_url;this.data_manager=(ak?ak:new S(H,this));this.content_div=$("<div class='track-content'>").appendTo(this.container_div);if(this.container){this.container.content_div.append(this.container_div)}};p(i.prototype,q.prototype,{action_icons_def:[{name:"mode_icon",title:"Set display mode",css_class:"chevron-expand",on_click_fn:function(){}},q.prototype.action_icons_def[0],{name:"overview_icon",title:"Set as overview",css_class:"overview-icon",on_click_fn:function(af){af.view.set_overview(af)}},q.prototype.action_icons_def[1],{name:"filters_icon",title:"Filters",css_class:"filters-icon",on_click_fn:function(af){af.filters_div.toggle();af.filters_manager.reset_filters()}},{name:"tools_icon",title:"Tools",css_class:"tools-icon",on_click_fn:function(af){af.dynamic_tool_div.toggle();if(af.dynamic_tool_div.is(":visible")){af.set_name(af.name+af.tool_region_and_parameters_str())}else{af.revert_name()}$(".tipsy").remove()}},q.prototype.action_icons_def[2]],can_draw:function(){if(this.dataset_id&&q.prototype.can_draw.call(this)){return true}return false},build_container_div:function(){return $("<div/>").addClass("track").attr("id","track_"+this.id).css("position","relative")},build_header_div:function(){var af=$("<div class='track-header'/>");if(this.view.editor){this.drag_div=$("<div/>").addClass(this.drag_handle_class).appendTo(af)}this.name_div=$("<div/>").addClass("track-name").appendTo(af).text(this.name).attr("id",this.name.replace(/\s+/g,"-").replace(/[^a-zA-Z0-9\-]/g,"").toLowerCase());return af},build_action_icons:function(){q.prototype.build_action_icons.call(this,this.action_icons_def);var ag=this;if(ag.display_modes!==undefined){var ak=(ag.config&&ag.config.values.mode?ag.config.values.mode:ag.display_modes[0]);ag.mode=ak;this.action_icons.mode_icon.attr("title","Set display mode (now: "+ag.mode+")");var ai={};for(var ah=0,af=ag.display_modes.length;ah<af;ah++){var aj=ag.display_modes[ah];ai[aj]=function(al){return function(){ag.change_mode(al);ag.icons_div.show();ag.container_div.mouseleave(function(){ag.icons_div.hide()})}}(aj)}make_popupmenu(this.action_icons.mode_icon,ai)}},hide_contents:function(){this.content_div.children().remove();this.content_div.hide();this.container_div.find(".yaxislabel, .track-resize").hide()},show_contents:function(){this.content_div.show();this.container_div.find(".yaxislabel, .track-resize").show();this.request_draw()},get_type:function(){if(this instanceof ab){return"LabelTrack"}else{if(this instanceof z){return"ReferenceTrack"}else{if(this instanceof j){return"LineTrack"}else{if(this instanceof W){return"ReadTrack"}else{if(this instanceof U){return"VcfTrack"}else{if(this instanceof h){return"CompositeTrack"}else{if(this instanceof d){return"FeatureTrack"}}}}}}}return""},init:function(){var af=this;af.enabled=false;af.tile_cache.clear();af.data_manager.clear();af.content_div.css("height","auto");af.container_div.removeClass("nodata error pending");if(!af.dataset_id){return}$.getJSON(converted_datasets_state_url,{hda_ldda:af.hda_ldda,dataset_id:af.dataset_id,chrom:af.view.chrom},function(ag){if(!ag||ag==="error"||ag.kind==="error"){af.container_div.addClass("error");af.content_div.text(o);if(ag.message){var ah=$(" <a href='javascript:void(0);'></a>").text("View error").click(function(){show_modal("Trackster Error","<pre>"+ag.message+"</pre>",{Close:hide_modal})});af.content_div.append(ah)}}else{if(ag==="no converter"){af.container_div.addClass("error");af.content_div.text(J)}else{if(ag==="no data"||(ag.data!==undefined&&(ag.data===null||ag.data.length===0))){af.container_div.addClass("nodata");af.content_div.text(D)}else{if(ag==="pending"){af.container_div.addClass("pending");af.content_div.text(t);setTimeout(function(){af.init()},af.data_query_wait)}else{if(ag.status==="data"){if(ag.valid_chroms){af.valid_chroms=ag.valid_chroms;af.update_icons()}af.content_div.text(Y);if(af.view.chrom){af.content_div.text("");af.content_div.css("height",af.height_px+"px");af.enabled=true;$.when(af.predraw_init()).done(function(){af.container_div.removeClass("nodata error pending");af.request_draw()})}}}}}}});this.update_icons()},predraw_init:function(){}});var M=function(aj,ah,ag,ai,am,al,ak){i.call(this,aj,ah,ag,ai,ak);var af=this,ah=af.view;m(af.container_div,af.drag_handle_class,".group",af);this.filters_manager=new aa(this,(am!==undefined?am:{}));this.filters_available=false;this.filters_visible=false;this.tool=(al!==undefined&&obj_length(al)>0?new r(this,al):undefined);this.tile_cache=new c(R);if(this.header_div){if(this.filters_manager){this.filters_div=this.filters_manager.parent_div;this.header_div.after(this.filters_div)}if(this.tool){this.dynamic_tool_div=this.tool.parent_div;this.header_div.after(this.dynamic_tool_div)}}};p(M.prototype,q.prototype,i.prototype,{copy:function(af){var ag=new this.constructor(this.name,this.view,af,this.hda_ldda,this.dataset_id,this.prefs,this.filters,this.tool,this.data_manager);ag.enabled=this.enabled;return ag},to_dict:function(){return{track_type:this.get_type(),name:this.name,hda_ldda:this.hda_ldda,dataset_id:this.dataset_id,prefs:this.prefs,mode:this.mode,}},from_dict:function(ah,ag){var af=new this.constructor(ah.name,view,ag,ah.hda_ldda,ah.dataset_id,ah.prefs,ah.filters,ah.tool);if(ah.mode){af.change_mode(ah.mode)}return af},change_mode:function(ag){var af=this;af.mode=ag;af.config.values.mode=ag;af.tile_cache.clear();af.request_draw();this.action_icons.mode_icon.attr("title","Set display mode (now: "+af.mode+")");return af},update_icons:function(){var af=this;if(af.filters_available){af.action_icons.filters_icon.show()}else{af.action_icons.filters_icon.hide()}if(af.tool){af.action_icons.tools_icon.show()}else{af.action_icons.tools_icon.hide()}},_gen_tile_cache_key:function(ag,ah,af){return ag+"_"+ah+"_"+af},request_draw:function(ag,af){this.view.request_redraw(false,ag,af,this)},_draw:function(ah,ar){if(!this.can_draw()){return}var ap=this.view.low,al=this.view.high,an=al-ap,ai=this.view.container.width(),av=ai/an,ak=this.view.resolution,au=this.content_div;if(this.is_overview){ap=this.view.max_low;al=this.view.max_high;ak=Math.pow(A,Math.ceil(Math.log((view.max_high-view.max_low)/Q)/Math.log(A)));av=ai/(view.max_high-view.max_low)}if(!ar){this.content_div.children().addClass("remove")}this.max_height=0;var ag=Math.floor(ap/ak/Q);var ao=true;var at=[];var af=0;var am=function(aw){return(aw&&"track" in aw)};while((ag*Q*ak)<al){var aq=this.draw_helper(ah,ai,ag,ak,au,av);if(am(aq)){at.push(aq)}else{ao=false}ag+=1;af++}if(!ar){this.content_div.children(".remove").remove()}var aj=this;if(ao){aj.postdraw_actions(at,ai,av,ar)}},postdraw_actions:function(aj,ak,al,af){var ah=this;var ai=false;for(var ag=0;ag<aj.length;ag++){if(aj[ag].message){ai=true;break}}if(ai){for(var ag=0;ag<aj.length;ag++){tile=aj[ag];if(!tile.message){tile.html_elt.css("padding-top",C)}}}},draw_helper:function(af,at,aw,au,ak,al,an){var ar=this,az=this._gen_tile_cache_key(at,al,aw),ax=aw*Q*au,ag=ax+Q*au;var ay=(af?undefined:ar.tile_cache.get(az));if(ay){ar.show_tile(ay,ak,al);return ay}var ap=true;var av=ar.data_manager.get_data(ax,ag,ar.mode,au,ar.data_url_extra_params);if(is_deferred(av)){ap=false}var am;if(view.reference_track&&al>view.canvas_manager.char_width_px){am=view.reference_track.data_manager.get_data(ax,ag,ar.mode,au,view.reference_track.data_url_extra_params);if(is_deferred(am)){ap=false}}if(ap){p(av,an);var ao=ar.mode;if(ao==="Auto"){ao=ar.get_mode(av);ar.update_auto_mode(ao)}var ah=ar.view.canvas_manager.new_canvas(),ai=ar._get_tile_bounds(aw,au),ax=ai[0],ag=ai[1],at=Math.ceil((ag-ax)*al)+ar.left_offset,aq=ar.get_canvas_height(av,ao,al,at);ah.width=at;ah.height=aq;var ay=ar.draw_tile(av,ah,ao,au,aw,al,am);if(ay!==undefined){ar.tile_cache.set(az,ay);ar.show_tile(ay,ak,al)}return ay}var aj=$.Deferred();$.when(av,am).then(function(){view.request_redraw(false,false,false,ar);aj.resolve()});return aj},get_canvas_height:function(af,ah,ai,ag){return this.height_px},draw_tile:function(af,aj,ak,ai,ag,al,ah){console.log("Warning: TiledTrack.draw_tile() not implemented.")},show_tile:function(ah,aj,ak){var ag=this,af=ah.html_elt;ah.predisplay_actions();var ai=(ah.low-(this.is_overview?this.view.max_low:this.view.low))*ak;if(this.left_offset){ai-=this.left_offset}af.css({position:"absolute",top:0,left:ai,height:""});if(af.hasClass("remove")){af.removeClass("remove")}else{aj.append(af)}ag.max_height=Math.max(ag.max_height,af.height());ag.content_div.css("height",ag.max_height+"px");aj.children().css("height",ag.max_height+"px")},_get_tile_bounds:function(af,ag){var ai=af*Q*ag,aj=Q*ag,ah=(ai+aj<=this.view.max_high?ai+aj:this.view.max_high);return[ai,ah]},tool_region_and_parameters_str:function(ah,af,ai){var ag=this,aj=(ah!==undefined&&af!==undefined&&ai!==undefined?ah+":"+af+"-"+ai:"all");return" - region=["+aj+"], parameters=["+ag.tool.get_param_values().join(", ")+"]"},data_and_mode_compatible:function(af,ag){return false},init_for_tool_data:function(){this.data_url=raw_data_url;this.data_query_wait=1000;this.dataset_check_url=dataset_state_url;this.predraw_init=function(){var ag=this;var af=function(){if(ag.data_manager.size()===0){setTimeout(af,300)}else{ag.data_url=default_data_url;ag.data_query_wait=K;ag.dataset_state_url=converted_datasets_state_url;$.getJSON(ag.dataset_state_url,{dataset_id:ag.dataset_id,hda_ldda:ag.hda_ldda},function(ah){})}};af()}}});var ab=function(ag,af){i.call(this,"label",ag,af,false,{});this.container_div.addClass("label-track")};p(ab.prototype,i.prototype,{build_header_div:function(){},init:function(){this.enabled=true},_draw:function(){var ah=this.view,ai=ah.high-ah.low,al=Math.floor(Math.pow(10,Math.floor(Math.log(ai)/Math.log(10)))),af=Math.floor(ah.low/al)*al,aj=this.view.container.width(),ag=$("<div style='position: relative; height: 1.3em;'></div>");while(af<ah.high){var ak=(af-ah.low)/ai*aj;ag.append($("<div class='label'>"+commatize(af)+"</div>").css({position:"absolute",left:ak-1}));af+=al}this.content_div.children(":first").remove();this.content_div.append(ag)}});var h=function(ai,ah,ag,af){this.display_modes=["Histogram","Line","Filled","Intensity"];M.call(this,ai,ah,ag);this.drawables=[];if(af){var al=[],ak;for(var aj=0;aj<af.length;aj++){ak=af[aj];al.push(ak.dataset_id);this.drawables[aj]=ak.copy()}this.enabled=true}this.update_icons();this.obj_type="CompositeTrack"};p(h.prototype,M.prototype,{to_dict:x.prototype.to_dict,add_drawable:x.prototype.add_drawable,from_dict:function(al,af){var ak=new this.constructor(al.name,view,af,al.prefs,view.viewport_container,view);var ag,aj,ai;for(var ah=0;ah<al.drawables.length;ah++){ag=al.drawables[ah];aj=ag.obj_type;if(!aj){aj=ag.track_type}ai=addable_objects[aj].prototype.from_dict(ag);ak.add_drawable(ai)}return ak},change_mode:function(af){M.prototype.change_mode.call(this,af);for(var ag=0;ag<this.drawables.length;ag++){this.drawables[ag].change_mode(af)}},init:function(){this.enabled=true;this.request_draw()},update_icons:function(){this.action_icons.filters_icon.hide();this.action_icons.tools_icon.hide()},can_draw:q.prototype.can_draw,draw_helper:function(af,at,ax,au,ak,am,ao){var ar=this,aB=this._gen_tile_cache_key(at,am,ax),ay=ax*Q*au,ag=ay+Q*au;var aA=(af?undefined:ar.tile_cache.get(aB));if(aA){ar.show_tile(aA,ak,am);return aA}var al=[],ar,ap=true,av,an;for(var aw=0;aw<this.drawables.length;aw++){ar=this.drawables[aw];av=ar.data_manager.get_data(ay,ag,ar.mode,au,ar.data_url_extra_params);if(is_deferred(av)){ap=false}al.push(av);an=null;if(view.reference_track&&am>view.canvas_manager.char_width_px){an=view.reference_track.data_manager.get_data(ay,ag,ar.mode,au,view.reference_track.data_url_extra_params);if(is_deferred(an)){ap=false}}al.push(an)}if(ap){p(av,ao);var ah=ar.view.canvas_manager.new_canvas(),ai=ar._get_tile_bounds(ax,au),ay=ai[0],ag=ai[1],at=Math.ceil((ag-ay)*am),aq=ar.get_canvas_height(av,mode,am,at);ah.width=at;ah.height=aq;var az=0;for(var aw=0;aw<this.drawables.length;aw++,az+=2){ar=this.drawables[aw];av=al[az];an=al[az+1];aA=ar.draw_tile(av,ah,ar.mode,au,ax,am,an)}ar.tile_cache.set(aB,aA);ar.show_tile(aA,ak,am);return aA}var aj=$.Deferred(),ar=this;$.when.apply($,al).then(function(){view.request_redraw(false,false,false,ar);aj.resolve()});return aj}});var z=function(af){M.call(this,"reference",af,{content_div:af.top_labeltrack},{});af.reference_track=this;this.left_offset=200;this.height_px=12;this.container_div.addClass("reference-track");this.content_div.css("background","none");this.content_div.css("min-height","0px");this.content_div.css("border","none");this.data_url=reference_url;this.data_url_extra_params={dbkey:af.dbkey};this.data_manager=new G(H,this,false)};p(z.prototype,q.prototype,M.prototype,{build_header_div:function(){},init:function(){this.enabled=true},can_draw:q.prototype.can_draw,draw_tile:function(an,ah,ak,aj,ag,ap){var ai=this;if(ap>this.view.canvas_manager.char_width_px){if(an.data===null){ai.content_div.css("height","0px");return}var ao=ah.getContext("2d");ao.font=ao.canvas.manager.default_font;ao.textAlign="center";an=an.data;for(var al=0,am=an.length;al<am;al++){var af=Math.round(al*ap);ao.fillText(an[al],af+ai.left_offset,10)}return new b(ai,ag,aj,ah,an)}this.content_div.css("height","0px")}});var j=function(af,am,ag,al,ao,an,aj,ak,ah){var ai=this;this.display_modes=["Histogram","Line","Filled","Intensity"];this.mode="Histogram";M.call(this,af,am,ag,an,aj,ak,ah);this.min_height_px=16;this.max_height_px=400;this.height_px=32;this.hda_ldda=al;this.dataset_id=ao;this.original_dataset_id=ao;this.left_offset=0;this.config=new E({track:this,params:[{key:"name",label:"Name",type:"text",default_value:af},{key:"color",label:"Color",type:"color",default_value:get_random_color()},{key:"min_value",label:"Min Value",type:"float",default_value:undefined},{key:"max_value",label:"Max Value",type:"float",default_value:undefined},{key:"mode",type:"string",default_value:this.mode,hidden:true},{key:"height",type:"int",default_value:this.height_px,hidden:true}],saved_values:an,onchange:function(){ai.set_name(ai.prefs.name);ai.vertical_range=ai.prefs.max_value-ai.prefs.min_value;$("#linetrack_"+ai.dataset_id+"_minval").text(ai.prefs.min_value);$("#linetrack_"+ai.dataset_id+"_maxval").text(ai.prefs.max_value);ai.tile_cache.clear();ai.request_draw()}});this.prefs=this.config.values;this.height_px=this.config.values.height;this.vertical_range=this.config.values.max_value-this.config.values.min_value;this.add_resize_handle()};p(j.prototype,q.prototype,M.prototype,{add_resize_handle:function(){var af=this;var ai=false;var ah=false;var ag=$("<div class='track-resize'>");$(af.container_div).hover(function(){if(af.content_visible){ai=true;ag.show()}},function(){ai=false;if(!ah){ag.hide()}});ag.hide().bind("dragstart",function(aj,ak){ah=true;ak.original_height=$(af.content_div).height()}).bind("drag",function(ak,al){var aj=Math.min(Math.max(al.original_height+al.deltaY,af.min_height_px),af.max_height_px);$(af.content_div).css("height",aj);af.height_px=aj;af.request_draw(true)}).bind("dragend",function(aj,ak){af.tile_cache.clear();ah=false;if(!ai){ag.hide()}af.config.values.height=af.height_px}).appendTo(af.container_div)},predraw_init:function(){var af=this;af.vertical_range=undefined;return $.getJSON(af.data_url,{stats:true,chrom:af.view.chrom,low:null,high:null,hda_ldda:af.hda_ldda,dataset_id:af.dataset_id},function(ag){af.container_div.addClass("line-track");var aj=ag.data;if(isNaN(parseFloat(af.prefs.min_value))||isNaN(parseFloat(af.prefs.max_value))){var ah=aj.min;var al=aj.max;ah=Math.floor(Math.min(0,Math.max(ah,aj.mean-2*aj.sd)));al=Math.ceil(Math.max(0,Math.min(al,aj.mean+2*aj.sd)));af.prefs.min_value=ah;af.prefs.max_value=al;$("#track_"+af.dataset_id+"_minval").val(af.prefs.min_value);$("#track_"+af.dataset_id+"_maxval").val(af.prefs.max_value)}af.vertical_range=af.prefs.max_value-af.prefs.min_value;af.total_frequency=aj.total_frequency;af.container_div.find(".yaxislabel").remove();var ak=$("<div />").addClass("yaxislabel").attr("id","linetrack_"+af.dataset_id+"_minval").text(Z(af.prefs.min_value,3));var ai=$("<div />").addClass("yaxislabel").attr("id","linetrack_"+af.dataset_id+"_maxval").text(Z(af.prefs.max_value,3));ai.css({position:"absolute",top:"24px",left:"10px"});ai.prependTo(af.container_div);ak.css({position:"absolute",bottom:"2px",left:"10px"});ak.prependTo(af.container_div)})},draw_tile:function(ap,ah,ak,ai,ag,ao){if(this.vertical_range===undefined){return}var an=ah.getContext("2d"),af=this._get_tile_bounds(ag,ai),aj=af[0],am=af[1],al=new L.LinePainter(ap.data,aj,am,this.prefs,ak);an.globalCompositeOperation="darker";al.draw(an,ah.width,ah.height);return new b(this.track,ag,ai,ah,ap.data)},data_and_mode_compatible:function(af,ag){return true},});var d=function(af,am,ag,al,ao,an,aj,ak,ah){var ai=this;this.display_modes=["Auto","Histogram","Dense","Squish","Pack"];M.call(this,af,am,ag,an,aj,ak,ah);this.config=new E({track:this,params:[{key:"name",label:"Name",type:"text",default_value:af},{key:"block_color",label:"Block color",type:"color",default_value:get_random_color()},{key:"label_color",label:"Label color",type:"color",default_value:"black"},{key:"show_counts",label:"Show summary counts",type:"bool",default_value:true,help:"Show the number of items in each bin when drawing summary histogram"},{key:"connector_style",label:"Connector style",type:"select",default_value:"fishbones",options:[{label:"Line with arrows",value:"fishbone"},{label:"Arcs",value:"arcs"}]},{key:"mode",type:"string",default_value:this.mode,hidden:true},],saved_values:an,onchange:function(){ai.set_name(ai.prefs.name);ai.tile_cache.clear();ai.set_painter_from_config();ai.request_draw()}});this.prefs=this.config.values;this.height_px=0;this.container_div.addClass("feature-track");this.hda_ldda=al;this.dataset_id=ao;this.original_dataset_id=ao;this.show_labels_scale=0.001;this.showing_details=false;this.summary_draw_height=30;this.inc_slots={};this.start_end_dct={};this.left_offset=200;this.set_painter_from_config()};p(d.prototype,q.prototype,M.prototype,{set_painter_from_config:function(){if(this.config.values.connector_style=="arcs"){this.painter=L.ArcLinkedFeaturePainter}else{this.painter=L.LinkedFeaturePainter}},postdraw_actions:function(at,an,aj,ah){M.prototype.postdraw_actions.call(this,at,ah);var am=this;if(ah){var ax=am.content_div.children();var aw=false;for(var ap=ax.length-1,aq=0;ap>=aq;ap--){var ai=$(ax[ap]);if(aw){ai.remove()}else{if(ai.children().length!==0){aw=true}}}}if(am.mode=="Histogram"){var ag=-1;for(var ap=0;ap<at.length;ap++){var ao=at[ap].max_val;if(ao>ag){ag=ao}}for(var ap=0;ap<at.length;ap++){var av=at[ap];if(av.max_val!==ag){av.html_elt.remove();am.draw_helper(true,an,av.index,av.resolution,av.html_elt.parent(),aj,{max:ag})}}}if(am.filters_manager){var ak=am.filters_manager.filters;for(var ar=0;ar<ak.length;ar++){ak[ar].update_ui_elt()}var au=false,af,al;for(var ap=0;ap<at.length;ap++){if(at[ap].data.length){af=at[ap].data[0];for(var ar=0;ar<ak.length;ar++){al=ak[ar];if(al.applies_to(af)&&al.min!==al.max){au=true;break}}}}if(am.filters_available!==au){am.filters_available=au;if(!am.filters_available){am.filters_div.hide()}am.update_icons()}}},update_auto_mode:function(af){var af;if(this.mode=="Auto"){if(af=="no_detail"){af="feature spans"}else{if(af=="summary_tree"){af="coverage histogram"}}this.action_icons.mode_icon.attr("title","Set display mode (now: Auto/"+af+")")}},incremental_slots:function(aj,ag,ai){var ah=this.view.canvas_manager.dummy_context,af=this.inc_slots[aj];if(!af||(af.mode!==ai)){af=new (s.FeatureSlotter)(aj,ai==="Pack",y,function(ak){return ah.measureText(ak)});af.mode=ai;this.inc_slots[aj]=af}return af.slot_features(ag)},get_summary_tree_data:function(aj,am,ah,av){if(av>ah-am){av=ah-am}var aq=Math.floor((ah-am)/av),au=[],ai=0;var ak=0,al=0,ap,at=0,an=[],ar,ao;var ag=function(ay,ax,az,aw){ay[0]=ax+az*aw;ay[1]=ax+(az+1)*aw};while(at<av&&ak!==aj.length){var af=false;for(;at<av&&!af;at++){ag(an,am,at,aq);for(al=ak;al<aj.length;al++){ap=aj[al].slice(1,3);if(is_overlap(ap,an)){af=true;break}}if(af){break}}data_start_index=al;au[au.length]=ar=[an[0],0];for(;al<aj.length;al++){ap=aj[al].slice(1,3);if(is_overlap(ap,an)){ar[1]++}else{break}}if(ar[1]>ai){ai=ar[1]}at++}return{max:ai,delta:aq,data:au}},get_mode:function(af){if(af.dataset_type==="summary_tree"){mode="summary_tree"}else{if(af.extra_info==="no_detail"||this.is_overview){mode="no_detail"}else{if(this.view.high-this.view.low>I){mode="Squish"}else{mode="Pack"}}}return mode},get_canvas_height:function(af,aj,ak,ag){if(aj==="summary_tree"||aj==="Histogram"){return this.summary_draw_height+T}else{var ai=this.incremental_slots(ak,af.data,aj);var ah=new (this.painter)(null,null,null,this.prefs,aj);return Math.max(ad,ah.get_required_height(ai,ag))}},draw_tile:function(ar,ah,at,aw,aA,an,ai){var au=this,ak=this._get_tile_bounds(aA,aw),aD=ak[0],ag=ak[1],aI=25,aj=this.left_offset;if(at==="summary_tree"||at==="Histogram"){this.container_div.find(".yaxislabel").remove();var af=$("<div />").addClass("yaxislabel");af.text(ar.max);af.css({position:"absolute",top:"24px",left:"10px",color:this.prefs.label_color});af.prependTo(this.container_div);if(ar.dataset_type!="summary_tree"){var ao=this.get_summary_tree_data(ar.data,aD,ag,200);if(ar.max){ao.max=ar.max}ar=ao}var aF=new L.SummaryTreePainter(ar,aD,ag,this.prefs);var av=ah.getContext("2d");av.translate(aj,T);aF.draw(av,ah.width,ah.height);return new k(au,aA,aw,ah,ar.data,ar.max)}var am=[];if(ar.data){var ap=this.filters_manager.filters;for(var ax=0,az=ar.data.length;ax<az;ax++){var al=ar.data[ax];var ay=false;var aq;for(var aC=0,aH=ap.length;aC<aH;aC++){aq=ap[aC];aq.update_attrs(al);if(!aq.keep(al)){ay=true;break}}if(!ay){am.push(al)}}}var aG=(this.filters_manager.alpha_filter?new B(this.filters_manager.alpha_filter):null);var aE=(this.filters_manager.height_filter?new B(this.filters_manager.height_filter):null);var aF=new (this.painter)(am,aD,ag,this.prefs,at,aG,aE,ai);var aB=null;var av=ah.getContext("2d");av.fillStyle=this.prefs.block_color;av.font=av.canvas.manager.default_font;av.textAlign="right";this.container_div.find(".yaxislabel").remove();if(ar.data){slots=this.inc_slots[an].slots;av.translate(aj,0);aB=aF.draw(av,ah.width,ah.height,slots);aB.translation=-aj}return new O(au,aA,aw,ah,ar.data,at,ar.message,aB)},data_and_mode_compatible:function(af,ag){if(ag==="Auto"){return true}else{if(af.extra_info==="no_detail"||af.dataset_type==="summary_tree"){return false}else{return true}}},});var U=function(af,al,ag,ak,an,am,ai,aj,ah){d.call(this,af,al,ag,ak,an,am,ai,aj,ah);this.config=new E({track:this,params:[{key:"name",label:"Name",type:"text",default_value:af},{key:"block_color",label:"Block color",type:"color",default_value:get_random_color()},{key:"label_color",label:"Label color",type:"color",default_value:"black"},{key:"show_insertions",label:"Show insertions",type:"bool",default_value:false},{key:"show_counts",label:"Show summary counts",type:"bool",default_value:true},{key:"mode",type:"string",default_value:this.mode,hidden:true},],saved_values:am,onchange:function(){this.track.set_name(this.track.prefs.name);this.track.tile_cache.clear();this.track.request_draw()}});this.prefs=this.config.values;this.painter=L.ReadPainter};p(U.prototype,q.prototype,M.prototype,d.prototype);var W=function(af,al,ag,ak,ao,an,ai,ah){d.call(this,af,al,ag,ak,ao,an,ai,ah);var aj=get_random_color(),am=get_random_color([aj,"#ffffff"]);this.config=new E({track:this,params:[{key:"name",label:"Name",type:"text",default_value:af},{key:"block_color",label:"Block and sense strand color",type:"color",default_value:aj},{key:"reverse_strand_color",label:"Antisense strand color",type:"color",default_value:am},{key:"label_color",label:"Label color",type:"color",default_value:"black"},{key:"show_insertions",label:"Show insertions",type:"bool",default_value:false},{key:"show_differences",label:"Show differences only",type:"bool",default_value:true},{key:"show_counts",label:"Show summary counts",type:"bool",default_value:true},{key:"mode",type:"string",default_value:this.mode,hidden:true},],saved_values:an,onchange:function(){this.track.set_name(this.track.prefs.name);this.track.tile_cache.clear();this.track.request_draw()}});this.prefs=this.config.values;this.painter=L.ReadPainter;this.update_icons()};p(W.prototype,q.prototype,M.prototype,d.prototype);X.View=ac;X.DrawableGroup=P;X.LineTrack=j;X.FeatureTrack=d;X.ReadTrack=W;X.VcfTrack=U;X.CompositeTrack=h};var slotting_module=function(c,b){var e=c("class").extend;var d=2,a=5;b.FeatureSlotter=function(i,h,f,g){this.slots={};this.start_end_dct={};this.w_scale=i;this.include_label=h;this.max_rows=f;this.measureText=g};e(b.FeatureSlotter.prototype,{slot_features:function(m){var p=this.w_scale,s=this.slots,h=this.start_end_dct,y=[],A=[],n=0,z=this.max_rows;for(var w=0,x=m.length;w<x;w++){var l=m[w],o=l[0];if(s[o]!==undefined){n=Math.max(n,s[o]);A.push(s[o])}else{y.push(w)}}var q=function(F,G){for(var E=0;E<=z;E++){var C=false,H=h[E];if(H!==undefined){for(var B=0,D=H.length;B<D;B++){var i=H[B];if(G>i[0]&&F<i[1]){C=true;break}}}if(!C){return E}}return -1};for(var w=0,x=y.length;w<x;w++){var l=m[y[w]],o=l[0],u=l[1],f=l[2],r=l[3],g=Math.floor(u*p),k=Math.ceil(f*p),v=this.measureText(r).width,j;if(r!==undefined&&this.include_label){v+=(d+a);if(g-v>=0){g-=v;j="left"}else{k+=v;j="right"}}var t=q(g,k);if(t>=0){if(h[t]===undefined){h[t]=[]}h[t].push([g,k]);s[o]=t;n=Math.max(n,t)}else{}}return n+1}})};var painters_module=function(i,x){var u=i("class").extend;var p=function(I,A,G,z,F,D){if(D===undefined){D=4}var C=z-A;var B=F-G;var E=Math.floor(Math.sqrt(C*C+B*B)/D);var J=C/E;var H=B/E;var y;for(y=0;y<E;y++,A+=J,G+=H){if(y%2!==0){continue}I.fillRect(A,G,D,1)}};var q=function(B,A,z,E){var D=A-E/2,C=A+E/2,F=z-Math.sqrt(E*3/2);B.beginPath();B.moveTo(D,F);B.lineTo(C,F);B.lineTo(A,z);B.lineTo(D,F);B.strokeStyle=this.fillStyle;B.fill();B.stroke();B.closePath()};var d=function(y){this.default_val=(y?y:1)};d.prototype.gen_val=function(y){return this.default_val};var l=function(A,C,y,z,B){this.data=A;this.view_start=C;this.view_end=y;this.prefs=u({},this.default_prefs,z);this.mode=B};l.prototype.default_prefs={};var v=function(A,C,y,z,B){l.call(this,A,C,y,z,B)};v.prototype.default_prefs={show_counts:false};v.prototype.draw=function(M,z,L){var E=this.view_start,O=this.view_end-this.view_start,N=z/O;var J=this.data.data,I=this.data.delta,G=this.data.max,B=L;delta_x_px=Math.ceil(I*N);M.save();for(var C=0,D=J.length;C<D;C++){var H=Math.floor((J[C][0]-E)*N);var F=J[C][1];if(!F){continue}var K=F/G*L;if(F!==0&&K<1){K=1}M.fillStyle=this.prefs.block_color;M.fillRect(H,B-K,delta_x_px,K);var A=4;if(this.prefs.show_counts&&(M.measureText(F).width+A)<delta_x_px){M.fillStyle=this.prefs.label_color;M.textAlign="center";M.fillText(F,H+(delta_x_px/2),10)}}M.restore()};var b=function(y,C,E,F,A){l.call(this,y,C,E,F,A);if(this.prefs.min_value===undefined){var G=Infinity;for(var z=0,B=this.data.length;z<B;z++){G=Math.min(G,this.data[z][1])}this.prefs.min_value=G}if(this.prefs.max_value===undefined){var D=-Infinity;for(var z=0,B=this.data.length;z<B;z++){D=Math.max(D,this.data[z][1])}this.prefs.max_value=D}};b.prototype.default_prefs={min_value:undefined,max_value:undefined,mode:"Histogram",color:"#000",overflow_color:"#F66"};b.prototype.draw=function(S,Q,N){var I=false,K=this.prefs.min_value,F=this.prefs.max_value,M=F-K,B=N,C=this.view_start,P=this.view_end-this.view_start,D=Q/P,L=this.mode,aa=this.data;S.save();var ac=Math.round(N+K/M*N);if(L!=="Intensity"){S.fillStyle="#aaa";S.fillRect(0,ac,Q,1)}S.beginPath();var Y,G,E;if(aa.length>1){E=Math.ceil((aa[1][0]-aa[0][0])*D)}else{E=10}var A=parseInt(this.prefs.color.slice(1),16),H=(A&16711680)>>16,R=(A&65280)>>8,V=A&255;for(var T=0,U=aa.length;T<U;T++){S.fillStyle=S.strokeStyle=this.prefs.color;Y=Math.round((aa[T][0]-C)*D);G=aa[T][1];var W=false,J=false;if(G===null){if(I&&L==="Filled"){S.lineTo(Y,B)}I=false;continue}if(G<K){J=true;G=K}else{if(G>F){W=true;G=F}}if(L==="Histogram"){G=Math.round(G/M*B);S.fillRect(Y,ac,E,-G)}else{if(L==="Intensity"){var z=(G-K)/M,O=Math.round(H+(255-H)*(1-z)),X=Math.round(R+(255-R)*(1-z)),ab=Math.round(V+(255-V)*(1-z));S.fillStyle="rgb("+O+","+X+","+ab+")";S.fillRect(Y,0,E,B)}else{G=Math.round(B-(G-K)/M*B);if(I){S.lineTo(Y,G)}else{I=true;if(L==="Filled"){S.moveTo(Y,B);S.lineTo(Y,G)}else{S.moveTo(Y,G)}}}}S.fillStyle=this.prefs.overflow_color;if(W||J){var Z;if(L==="Histogram"||L==="Intensity"){Z=E}else{Y-=2;Z=4}if(W){S.fillRect(Y,0,Z,3)}if(J){S.fillRect(Y,B-3,Z,3)}}S.fillStyle=this.prefs.color}if(L==="Filled"){if(I){S.lineTo(Y,ac);S.lineTo(0,ac)}S.fill()}else{S.stroke()}S.restore()};var m=function(y){this.feature_positions={};this.slot_height=y;this.translation=0;this.y_translation=0};m.prototype.map_feature_data=function(z,B,y,A){if(!this.feature_positions[B]){this.feature_positions[B]=[]}this.feature_positions[B].push({data:z,x_start:y,x_end:A})};m.prototype.get_feature_data=function(z,D){var C=Math.floor((D-this.y_translation)/this.slot_height),B;if(!this.feature_positions[C]){return null}z+=this.translation;for(var A=0;A<this.feature_positions[C].length;A++){B=this.feature_positions[C][A];if(z>=B.x_start&&z<=B.x_end){return B.data}}};var o=function(A,D,y,z,C,E,B){l.call(this,A,D,y,z,C);this.alpha_scaler=(E?E:new d());this.height_scaler=(B?B:new d())};o.prototype.default_prefs={block_color:"#FFF",connector_color:"#FFF"};u(o.prototype,{get_required_height:function(A,z){var y=y_scale=this.get_row_height(),B=this.mode;if(B==="no_detail"||B==="Squish"||B==="Pack"){y=A*y_scale}return y+this.get_top_padding(z)+this.get_bottom_padding(z)},get_top_padding:function(y){return 0},get_bottom_padding:function(y){return Math.max(Math.round(this.get_row_height()/2),5)},draw:function(K,I,G,F){var Q=this.data,D=this.view_start,M=this.view_end;K.save();K.fillStyle=this.prefs.block_color;K.textAlign="right";var H=this.view_end-this.view_start,E=I/H,L=this.get_row_height(),P=new m(L),B;for(var N=0,O=Q.length;N<O;N++){var A=Q[N],C=A[0],J=A[1],y=A[2],z=(F&&F[C]!==undefined?F[C]:null);if((J<M&&y>D)&&(this.mode=="Dense"||z!==null)){B=this.draw_element(K,this.mode,A,z,D,M,E,L,I);P.map_feature_data(A,z,B[0],B[1])}}K.restore();P.y_translation=this.get_top_padding(I);return P},draw_element:function(E,A,G,C,B,D,F,z,y){console.log("WARNING: Unimplemented function.");return[0,0]}});var c=10,h=3,k=5,w=10,f=1,s=9,e=3,a=9,j=2,g="#ccc";var r=function(A,D,y,z,C,E,B){o.call(this,A,D,y,z,C,E,B);this.draw_background_connector=true;this.draw_individual_connectors=false};u(r.prototype,o.prototype,{get_row_height:function(){var z=this.mode,y;if(z==="Dense"){y=c}else{if(z==="no_detail"){y=h}else{if(z==="Squish"){y=k}else{y=w}}}return y},draw_element:function(M,D,X,H,O,aj,an,ap,y){var T=X[0],al=X[1],ad=X[2]-1,Q=X[3],ae=Math.floor(Math.max(0,(al-O)*an)),N=Math.ceil(Math.min(y,Math.max(0,(ad-O)*an))),ac=ae,ao=N,aa=(D==="Dense"?0:(0+H))*ap+this.get_top_padding(y),L,ah,R=null,ar=null,B=this.prefs.block_color,ag=this.prefs.label_color;M.globalAlpha=this.alpha_scaler.gen_val(X);if(D==="Dense"){H=1}if(D==="no_detail"){M.fillStyle=B;M.fillRect(ae,aa+5,N-ae,f)}else{var K=X[4],Z=X[5],af=X[6],C=X[7],V=true;if(Z&&af){R=Math.floor(Math.max(0,(Z-O)*an));ar=Math.ceil(Math.min(y,Math.max(0,(af-O)*an)))}var am,U;if(D==="Squish"){am=1;U=e;V=false}else{if(D==="Dense"){am=5;U=s}else{am=5;U=a}}if(!C){M.fillStyle=B;M.fillRect(ae,aa+1,N-ae,U);if(K&&V){if(K==="+"){M.fillStyle=M.canvas.manager.get_pattern("right_strand_inv")}else{if(K==="-"){M.fillStyle=M.canvas.manager.get_pattern("left_strand_inv")}}M.fillRect(ae,aa+1,N-ae,U)}}else{var J,W;if(D==="Squish"||D==="Dense"){J=aa+Math.floor(e/2)+1;W=1}else{if(K){J=aa;W=U}else{J+=(e/2)+1;W=1}}if(this.draw_background_connector){if(D==="Squish"||D==="Dense"){M.fillStyle=g}else{if(K){if(K==="+"){M.fillStyle=M.canvas.manager.get_pattern("right_strand")}else{if(K==="-"){M.fillStyle=M.canvas.manager.get_pattern("left_strand")}}}else{M.fillStyle=g}}M.fillRect(ae,J,N-ae,W)}var E;for(var ak=0,A=C.length;ak<A;ak++){var F=C[ak],z=Math.floor(Math.max(0,(F[0]-O)*an)),Y=Math.ceil(Math.min(y,Math.max((F[1]-1-O)*an))),S,ab;if(z>Y){continue}M.fillStyle=B;M.fillRect(z,aa+(U-am)/2+1,Y-z,am);if(R!==undefined&&af>Z&&!(z>ar||Y<R)){var ai=Math.max(z,R),I=Math.min(Y,ar);M.fillRect(ai,aa+1,I-ai,U);if(C.length==1&&D=="Pack"){if(K==="+"){M.fillStyle=M.canvas.manager.get_pattern("right_strand_inv")}else{if(K==="-"){M.fillStyle=M.canvas.manager.get_pattern("left_strand_inv")}}if(ai+14<I){ai+=2;I-=2}M.fillRect(ai,aa+1,I-ai,U)}}if(this.draw_individual_connectors&&S){this.draw_connector(M,S,ab,z,Y,aa)}S=z;ab=Y}if(D==="Pack"){M.globalAlpha=1;M.fillStyle="white";var G=this.height_scaler.gen_val(X),P=Math.ceil(U*G),aq=Math.round((U-P)/2);if(G!==1){M.fillRect(ae,J+1,N-ae,aq);M.fillRect(ae,J+U-aq+1,N-ae,aq)}}}M.globalAlpha=1;if(D==="Pack"&&al>O){M.fillStyle=ag;if(O===0&&ae-M.measureText(Q).width<0){M.textAlign="left";M.fillText(Q,N+j,aa+8);ao+=M.measureText(Q).width+j}else{M.textAlign="right";M.fillText(Q,ae-j,aa+8);ac-=M.measureText(Q).width+j}}}M.globalAlpha=1;return[ac,ao]}});var t=function(B,E,y,A,D,F,C,z){o.call(this,B,E,y,A,D,F,C);this.ref_seq=(z?z.data:null)};u(t.prototype,o.prototype,{get_row_height:function(){var y,z=this.mode;if(z==="Dense"){y=c}else{if(z==="Squish"){y=k}else{y=w;if(this.prefs.show_insertions){y*=2}}}return y},draw_read:function(K,A,ag,V,L,aa,ad,C,B,M){K.textAlign="center";var J=this,R=[L,aa],Z=0,W=0,D=0,F=K.canvas.manager.char_width_px,y=(B==="+"?this.prefs.block_color:this.prefs.reverse_strand_color);var O=[];if((A==="Pack"||this.mode==="Auto")&&M!==undefined&&ag>F){D=Math.round(ag/2)}if(!C){C=[[0,M.length]]}for(var G=0,I=C.length;G<I;G++){var z=C[G],E="MIDNSHP=X"[z[0]],S=z[1];if(E==="H"||E==="S"){Z-=S}var U=ad+Z,Y=Math.floor(Math.max(0,(U-L)*ag)),ab=Math.floor(Math.max(0,(U+S-L)*ag));if(Y===ab){ab+=1}switch(E){case"H":break;case"S":case"M":case"=":if(is_overlap([U,U+S],R)){var N=M.slice(W,W+S);if(D>0){K.fillStyle=y;K.fillRect(Y-D,V+1,ab-Y,9);K.fillStyle=g;for(var af=0,H=N.length;af<H;af++){if(this.prefs.show_differences&&this.ref_seq){var P=this.ref_seq[U-L+af];if(!P||P.toLowerCase()===N[af].toLowerCase()){continue}}if(U+af>=L&&U+af<=aa){var X=Math.floor(Math.max(0,(U+af-L)*ag));K.fillText(N[af],X,V+9)}}}else{K.fillStyle=y;K.fillRect(Y,V+4,ab-Y,e)}}W+=S;Z+=S;break;case"N":K.fillStyle=g;K.fillRect(Y-D,V+5,ab-Y,1);Z+=S;break;case"D":K.fillStyle="red";K.fillRect(Y-D,V+4,ab-Y,3);Z+=S;break;case"P":break;case"I":var ah=Y-D;if(is_overlap([U,U+S],R)){var N=M.slice(W,W+S);if(this.prefs.show_insertions){var T=Y-(ab-Y)/2;if((A==="Pack"||this.mode==="Auto")&&M!==undefined&&ag>F){K.fillStyle="yellow";K.fillRect(T-D,V-9,ab-Y,9);O[O.length]={type:"triangle",data:[ah,V+4,5]};K.fillStyle=g;switch(compute_overlap([U,U+S],R)){case (OVERLAP_START):N=N.slice(L-U);break;case (OVERLAP_END):N=N.slice(0,U-aa);break;case (CONTAINED_BY):break;case (CONTAINS):N=N.slice(L-U,U-aa);break}for(var af=0,H=N.length;af<H;af++){var X=Math.floor(Math.max(0,(U+af-L)*ag));K.fillText(N[af],X-(ab-Y)/2,V)}}else{K.fillStyle="yellow";K.fillRect(T,V+(this.mode!=="Dense"?2:5),ab-Y,(A!=="Dense"?e:s))}}else{if((A==="Pack"||this.mode==="Auto")&&M!==undefined&&ag>F){O.push({type:"text",data:[N.length,ah,V+9]})}else{}}}W+=S;break;case"X":W+=S;break}}K.fillStyle="yellow";var Q,ai,ae;for(var ac=0;ac<O.length;ac++){Q=O[ac];ai=Q.type;ae=Q.data;if(ai==="text"){K.save();K.font="bold "+K.font;K.fillText(ae[0],ae[1],ae[2]);K.restore()}else{if(ai=="triangle"){q(K,ae[0],ae[1],ae[2])}}}},draw_element:function(R,M,E,B,U,z,I,S,P){var H=E[0],Q=E[1],A=E[2],J=E[3],D=Math.floor(Math.max(0,(Q-U)*I)),F=Math.ceil(Math.min(P,Math.max(0,(A-U)*I))),C=(M==="Dense"?0:(0+B))*S,G=this.prefs.label_color,O=0;if((M==="Pack"||this.mode==="Auto")&&I>R.canvas.manager.char_width_px){var O=Math.round(I/2)}if(E[5] instanceof Array){var N=Math.floor(Math.max(0,(E[4][0]-U)*I)),L=Math.ceil(Math.min(P,Math.max(0,(E[4][1]-U)*I))),K=Math.floor(Math.max(0,(E[5][0]-U)*I)),y=Math.ceil(Math.min(P,Math.max(0,(E[5][1]-U)*I)));if(E[4][1]>=U&&E[4][0]<=z&&E[4][2]){this.draw_read(R,M,I,C,U,z,E[4][0],E[4][2],E[4][3],E[4][4])}if(E[5][1]>=U&&E[5][0]<=z&&E[5][2]){this.draw_read(R,M,I,C,U,z,E[5][0],E[5][2],E[5][3],E[5][4])}if(K>L){R.fillStyle=g;p(R,L-O,C+5,K-O,C+5)}}else{this.draw_read(R,M,I,C,U,z,Q,E[4],E[5],E[6])}if(M==="Pack"&&Q>U&&J!=="."){R.fillStyle=this.prefs.label_color;var T=1;if(T===0&&D-R.measureText(J).width<0){R.textAlign="left";R.fillText(J,F+j-O,C+8)}else{R.textAlign="right";R.fillText(J,D-j-O,C+8)}}return[0,0]}});var n=function(A,D,y,z,C,E,B){r.call(this,A,D,y,z,C,E,B);this.longest_feature_length=this.calculate_longest_feature_length();this.draw_background_connector=false;this.draw_individual_connectors=true};u(n.prototype,o.prototype,r.prototype,{calculate_longest_feature_length:function(){var z=0;for(var C=0,y=this.data.length;C<y;C++){var B=this.data[C],A=B[1],D=B[2];z=Math.max(z,D-A)}return z},get_top_padding:function(z){var y=this.view_end-this.view_start,A=z/y;return Math.min(128,Math.ceil((this.longest_feature_length/2)*A))},draw_connector:function(G,B,F,H,E,D){var y=(F+H)/2,C=H-y;var A=Math.PI,z=0;if(C>0){G.beginPath();G.arc(y,D,H-y,Math.PI,0);G.stroke()}}});x.Scaler=d;x.SummaryTreePainter=v;x.LinePainter=b;x.LinkedFeaturePainter=r;x.ReadPainter=t;x.ArcLinkedFeaturePainter=n};(function(d){var c={};var b=function(e){return c[e]};var a=function(f,g){var e={};g(b,e);c[f]=e};a("class",class_module);a("slotting",slotting_module);a("painters",painters_module);a("trackster",trackster_module);for(key in c.trackster){d[key]=c.trackster[key]}})(window); \ No newline at end of file diff -r eb5c80ae41612c9bbe27665f4749a0ba22c794e3 -r 1631db9677923b74cad7f595512ca8ccd2791df0 static/scripts/packed/trackster_ui.js --- a/static/scripts/packed/trackster_ui.js +++ b/static/scripts/packed/trackster_ui.js @@ -1,1 +1,1 @@ -var add_bookmark=function(b,a){var g=$("#bookmarks-container"),d=$("<div/>").addClass("bookmark").appendTo(g),c=$("<div/>").addClass("delete-icon-container").appendTo(d).click(function(){d.slideUp("fast");d.remove();view.has_changes=true;return false}),e=$("<a href=''/>").addClass("icon-button delete").appendTo(c),f=$("<div/>").addClass("position").appendTo(d),h=$("<a href=''/>").text(b).appendTo(f).click(function(){view.go_to(b);return false});annotation_div=get_editable_text_elt(a,true).addClass("annotation").appendTo(d);view.has_changes=true;return d};var addable_objects={LineTrack:LineTrack,FeatureTrack:FeatureTrack,VcfTrack:VcfTrack,ReadTrack:ReadTrack,CompositeTrack:CompositeTrack,DrawableGroup:DrawableGroup};var create_visualization=function(b,e,g,c,a,d,f){view=new View(b,e,g,c);view.editor=true;$.when(view.load_chroms_deferred).then(function(){if(a){var q=a.chrom,h=a.start,n=a.end,k=a.overview;if(q&&(h!==undefined)&&n){view.change_chrom(q,h,n)}}if(d){var l,j,m;for(var o=0;o<d.length;o++){l=d[o];j=l.obj_type;if(!j){j=l.track_type}m=addable_objects[j].prototype.from_dict(l,view);view.add_drawable(m)}}view.update_intro_div();var r;for(var o=0;o<view.drawables.length;o++){if(view.drawables[o].name===k){view.set_overview(view.drawables[o]);break}}if(f){var p;for(var o=0;o<f.length;o++){p=f[o];add_bookmark(p.position,p.annotation)}}view.has_changes=false});return view};var init_keyboard_nav=function(a){$(document).keydown(function(b){if($(b.srcElement).is(":input")){return}switch(b.which){case 37:a.move_fraction(0.25);break;case 38:var c=Math.round(a.viewport_container.height()/15);a.viewport_container.scrollTop(a.viewport_container.scrollTop()-20);break;case 39:a.move_fraction(-0.25);break;case 40:var c=Math.round(a.viewport_container.height()/15);a.viewport_container.scrollTop(a.viewport_container.scrollTop()+20);break}})}; \ No newline at end of file +var add_bookmark=function(b,a){var g=$("#bookmarks-container"),d=$("<div/>").addClass("bookmark").appendTo(g),c=$("<div/>").addClass("delete-icon-container").appendTo(d).click(function(){d.slideUp("fast");d.remove();view.has_changes=true;return false}),e=$("<a href=''/>").addClass("icon-button delete").appendTo(c),f=$("<div/>").addClass("position").appendTo(d),h=$("<a href=''/>").text(b).appendTo(f).click(function(){view.go_to(b);return false});annotation_div=get_editable_text_elt(a,true).addClass("annotation").appendTo(d);view.has_changes=true;return d};var object_from_dict=function(c,a){var b=c.obj_type;if(!b){b=c.track_type}return addable_objects[b].prototype.from_dict(c,a)};var addable_objects={LineTrack:LineTrack,FeatureTrack:FeatureTrack,VcfTrack:VcfTrack,ReadTrack:ReadTrack,CompositeTrack:CompositeTrack,DrawableGroup:DrawableGroup};var create_visualization=function(b,e,g,c,a,d,f){view=new View(b,e,g,c);view.editor=true;$.when(view.load_chroms_deferred).then(function(){if(a){var q=a.chrom,h=a.start,n=a.end,k=a.overview;if(q&&(h!==undefined)&&n){view.change_chrom(q,h,n)}}if(d){var l,j,m;for(var o=0;o<d.length;o++){view.add_drawable(object_from_dict(d[o],view))}}view.update_intro_div();var r;for(var o=0;o<view.drawables.length;o++){if(view.drawables[o].name===k){view.set_overview(view.drawables[o]);break}}if(f){var p;for(var o=0;o<f.length;o++){p=f[o];add_bookmark(p.position,p.annotation)}}view.has_changes=false});return view};var init_keyboard_nav=function(a){$(document).keydown(function(b){if($(b.srcElement).is(":input")){return}switch(b.which){case 37:a.move_fraction(0.25);break;case 38:var c=Math.round(a.viewport_container.height()/15);a.viewport_container.scrollTop(a.viewport_container.scrollTop()-20);break;case 39:a.move_fraction(-0.25);break;case 40:var c=Math.round(a.viewport_container.height()/15);a.viewport_container.scrollTop(a.viewport_container.scrollTop()+20);break}})}; \ No newline at end of file https://bitbucket.org/galaxy/galaxy-central/changeset/8f6c539d791b/ changeset: 8f6c539d791b user: jgoecks date: 2011-12-28 04:07:17 summary: Trackster: add tile predraw init for CompositeTracks and use it to set global min, max for composited line tracks. affected #: 1 file diff -r 1631db9677923b74cad7f595512ca8ccd2791df0 -r 8f6c539d791b29091a815e546759a1ffdb495b39 static/scripts/trackster.js --- a/static/scripts/trackster.js +++ b/static/scripts/trackster.js @@ -3473,19 +3473,18 @@ // Set up and draw tile. extend(tile_data, more_tile_data); + this.tile_predraw_init(); + var canvas = track.view.canvas_manager.new_canvas(), tile_bounds = track._get_tile_bounds(tile_index, resolution), tile_low = tile_bounds[0], tile_high = tile_bounds[1], width = Math.ceil( (tile_high - tile_low) * w_scale ), - height = track.get_canvas_height(tile_data, mode, w_scale, width); + // FIXME: need to set height to be max for all tracks. + height = track.get_canvas_height(tile_data, track.mode, w_scale, width); - // FIXME: - // (a) right now, only LineTracks respect width/height setting and do not set it in draw_tile; - // however, other track types be modified to work this way. This is necessary b/c setting the width/height - // clears the canvas and hence prevents non-compliant tracks from being used in CompositeTracks. - // (b) need to normalize across tracks before displaying, e.g. set LineTracks' min/max appropriately. + // Draw all tracks on a single tile. canvas.width = width; canvas.height = height; var all_data_index = 0 @@ -3512,6 +3511,38 @@ // Returned Deferred that is resolved when tile can be drawn. return can_draw; + }, + /** + * Actions taken before drawing a tile. + */ + tile_predraw_init: function() { + // + // Set min, max for LineTracks to be largest min, max. + // + + // Get smallest min, biggest max. + var + min = Number.MAX_VALUE, + max = -min, + track; + for (var i = 0; i < this.drawables.length; i++) { + track = this.drawables[i]; + if (track instanceof LineTrack) { + if (track.prefs.min_value < min) { + min = track.prefs.min_value + } + if (track.prefs.max_value > max) { + max = track.prefs.max_value + } + } + } + + // Set all tracks to smallest min, biggest max. + for (var i = 0; i < this.drawables.length; i++) { + track = this.drawables[i]; + track.prefs.min_value = min; + track.prefs.max_value = max; + } } }); https://bitbucket.org/galaxy/galaxy-central/changeset/10f98fc77790/ changeset: 10f98fc77790 user: jgoecks date: 2011-12-28 19:29:30 summary: Trackster: bug fixes for eb5c80ae4161 affected #: 1 file diff -r 8f6c539d791b29091a815e546759a1ffdb495b39 -r 10f98fc777902cbf91a589af7e054d0ab936724b static/scripts/trackster.js --- a/static/scripts/trackster.js +++ b/static/scripts/trackster.js @@ -624,7 +624,6 @@ * Sets data in the cache. */ set_data: function(low, high, result) { - //console.log("set_data", low, high, result); return this.set(this.gen_key(low, high), result); }, /** @@ -650,6 +649,7 @@ DataManager.call(this, num_elements, track, subset); }; extend(ReferenceTrackDataManager.prototype, DataManager.prototype, Cache.prototype, { + get: DataManager.prototype.get, load_data: function(low, high, mode, resolution, extra_params) { if (resolution > 1) { // Now that data is pre-fetched before draw, we don't load reference tracks @@ -3276,10 +3276,11 @@ return " - region=[" + region + "], parameters=[" + track.tool.get_param_values().join(", ") + "]"; }, /** - * Returns true if data is compatible with a given mode. + * Returns true if data is compatible with a given mode. Defaults to true because, for many tracks, + * all data is compatible with all modes. */ data_and_mode_compatible: function(data, mode) { - return false; + return true; }, /** * Set up track to receive tool data. @@ -3736,14 +3737,7 @@ painter.draw(ctx, canvas.width, canvas.height); return new Tile(this.track, tile_index, resolution, canvas, result.data); - }, - /** - * Returns true if data is compatible with a given mode. NOTE: for LineTrack, always - * returns true because all data is compatible with all modes. - */ - data_and_mode_compatible: function(data, mode) { - return true; - }, + } }); var FeatureTrack = function(name, view, container, hda_ldda, dataset_id, prefs, filters, tool, data_manager) { https://bitbucket.org/galaxy/galaxy-central/changeset/04967fa31a17/ changeset: 04967fa31a17 user: jgoecks date: 2011-12-28 21:27:50 summary: Trackster: pass w_scale into Painters because it cannot be recomputed from drawing width alone. affected #: 1 file diff -r 10f98fc777902cbf91a589af7e054d0ab936724b -r 04967fa31a177c16286cd742f1635ffc64a997e8 static/scripts/trackster.js --- a/static/scripts/trackster.js +++ b/static/scripts/trackster.js @@ -3734,7 +3734,7 @@ // HACK: this is needed for compositing tracks. This should be a config setting somewhere; also, // "darker" may not be included in future canvas implementations. ctx.globalCompositeOperation = "darker"; - painter.draw(ctx, canvas.width, canvas.height); + painter.draw(ctx, canvas.width, canvas.height, w_scale); return new Tile(this.track, tile_index, resolution, canvas, result.data); } @@ -4093,7 +4093,7 @@ var ctx = canvas.getContext("2d"); // Deal with left_offset by translating. ctx.translate(left_offset, SUMMARY_TREE_TOP_PADDING); - painter.draw(ctx, canvas.width, canvas.height); + painter.draw(ctx, canvas.width, canvas.height, w_scale); return new SummaryTreeTile(track, tile_index, resolution, canvas, result.data, result.max); } @@ -4139,7 +4139,7 @@ // Draw features. slots = this.inc_slots[w_scale].slots; ctx.translate(left_offset, 0); - feature_mapper = painter.draw(ctx, canvas.width, canvas.height, slots); + feature_mapper = painter.draw(ctx, canvas.width, canvas.height, w_scale, slots); feature_mapper.translation = -left_offset; } @@ -4489,6 +4489,13 @@ Painter.prototype.default_prefs = {}; /** + * Draw on the context using a rectangle of width x height. w_scale is + * needed because it cannot be computed from width and view size alone + * as a left_offset may be present. + */ +Painter.prototype.draw = function(ctx, width, height, w_scale) {}; + +/** * SummaryTreePainter, a histogram showing number of intervals in a region */ var SummaryTreePainter = function(data, view_start, view_end, prefs, mode) { @@ -4497,11 +4504,10 @@ SummaryTreePainter.prototype.default_prefs = { show_counts: false }; -SummaryTreePainter.prototype.draw = function(ctx, width, height) { +SummaryTreePainter.prototype.draw = function(ctx, width, height, w_scale) { var view_start = this.view_start, - view_range = this.view_end - this.view_start, - w_scale = width / view_range; + view_range = this.view_end - this.view_start; var points = this.data.data, delta = this.data.delta, max = this.data.max, // Set base Y so that max label and data do not overlap. Base Y is where rectangle bases @@ -4554,7 +4560,7 @@ LinePainter.prototype.default_prefs = { min_value: undefined, max_value: undefined, mode: "Histogram", color: "#000", overflow_color: "#F66" }; -LinePainter.prototype.draw = function(ctx, width, height) { +LinePainter.prototype.draw = function(ctx, width, height, w_scale) { var in_path = false, min_value = this.prefs.min_value, @@ -4563,7 +4569,6 @@ height_px = height, view_start = this.view_start, view_range = this.view_end - this.view_start, - w_scale = width / view_range, mode = this.mode, data = this.data; @@ -4758,7 +4763,7 @@ * Draw data on ctx using slots and within the rectangle defined by width and height. Returns * a FeaturePositionMapper object with information about where features were drawn. */ - draw: function(ctx, width, height, slots) { + draw: function(ctx, width, height, w_scale, slots) { var data = this.data, view_start = this.view_start, view_end = this.view_end; ctx.save(); @@ -4767,7 +4772,6 @@ ctx.textAlign = "right"; var view_range = this.view_end - this.view_start, - w_scale = width / view_range, y_scale = this.get_row_height(), feature_mapper = new FeaturePositionMapper(y_scale), x_draw_coords; Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: jgoecks: Set Cufflinks global model when upper quartile normalization is used.
by Bitbucket 22 Dec '11

22 Dec '11

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/21b645303c02/ changeset: 21b645303c02 user: jgoecks date: 2011-12-22 19:54:33 summary: Set Cufflinks global model when upper quartile normalization is used. affected #: 1 file diff -r d6d62cb3cf7ea7b7a11a5ca4caf4a85c50a31a93 -r 21b645303c0221690a0114b021cd5e706b0c917a tools/ngs_rna/cufflinks_wrapper.py --- a/tools/ngs_rna/cufflinks_wrapper.py +++ b/tools/ngs_rna/cufflinks_wrapper.py @@ -137,11 +137,11 @@ returncode = proc.wait() tmp_stderr.close() - # Read standard error to get total map mass. + # Read standard error to get total map/upper quartile mass. total_map_mass = -1 tmp_stderr = open( tmp_name, 'r' ) for line in tmp_stderr: - if line.lower().find( "total map mass") >= 0: + if line.lower().find( "total map mass" ) >= 0 or line.lower().find( "upper quartile" ) >= 0: total_map_mass = float( line.split(":")[1].strip() ) break tmp_stderr.close() Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: jgoecks: Trackster: when running tools, replace track with group.
by Bitbucket 22 Dec '11

22 Dec '11

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/d6d62cb3cf7e/ changeset: d6d62cb3cf7e user: jgoecks date: 2011-12-22 19:11:34 summary: Trackster: when running tools, replace track with group. affected #: 1 file diff -r 83756dd3d868aee6d319f0d1904a1dcdda12b5b9 -r d6d62cb3cf7ea7b7a11a5ca4caf4a85c50a31a93 static/scripts/trackster.js --- a/static/scripts/trackster.js +++ b/static/scripts/trackster.js @@ -946,6 +946,20 @@ return false; }, /** + * Replace one drawable with another. + */ + replace_drawable: function(old_drawable, new_drawable, update_html) { + var index = this.drawables.indexOf(old_drawable); + if (index !== -1) { + this.drawables[index] = new_drawable; + if (update_html) { + old_drawable.container_div.replaceWith(new_drawable.container_div); + } + return true; + } + return false; + }, + /** * Remove drawable from this collection. */ remove_drawable: function(drawable) { @@ -1002,7 +1016,11 @@ } ].concat(Drawable.prototype.action_icons_def), build_container_div: function() { - return $("<div/>").addClass("group").attr("id", "group_" + this.id).appendTo(this.container.content_div); + var container_div = $("<div/>").addClass("group").attr("id", "group_" + this.id); + if (this.container) { + this.container.content_div.append(container_div); + } + return container_div; }, build_header_div: function() { var header_div = $("<div/>").addClass("track-header"); @@ -1787,8 +1805,9 @@ // If track not in a group, create a group for it and add new track to group. If track // already in group, add track to group. if (current_track.container === view) { - var group = new DrawableGroup(this.name, this.track.view, this.track.container); - current_track.container.add_drawable(group); + // Create new group. + var group = new DrawableGroup(this.name, this.track.view); + current_track.container.replace_drawable(current_track, group, true); // TODO: this is ugly way to move track from one container to another -- make this easier via // a Drawable or DrawableCollection function. current_track.container.remove_drawable(current_track); @@ -1797,6 +1816,7 @@ container = group; } else { + // Use current group. container = current_track.container; } Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: jgoecks: Trackster: use integer for dummy filter value rather than string because it is easier for client to decode.
by Bitbucket 22 Dec '11

22 Dec '11

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/83756dd3d868/ changeset: 83756dd3d868 user: jgoecks date: 2011-12-22 16:43:17 summary: Trackster: use integer for dummy filter value rather than string because it is easier for client to decode. affected #: 1 file diff -r 356e8b9510a965d09226c450746dfa2ba267a42c -r 83756dd3d868aee6d319f0d1904a1dcdda12b5b9 lib/galaxy/visualization/tracks/data_providers.py --- a/lib/galaxy/visualization/tracks/data_providers.py +++ b/lib/galaxy/visualization/tracks/data_providers.py @@ -1053,5 +1053,5 @@ payload.append( feature.attributes[col] ) else: # Dummy value. - payload.append( "na" ) + payload.append( 0 ) return payload Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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