- galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] 0875b8: fix bowtie2 link
by GitHub 28 Apr '18

28 Apr '18

Branch: refs/heads/bowtie2_link Home: https://github.com/galaxyproject/galaxy Commit: 0875b8e65d6d5d7130c829ec8e5b7f9bffcced3a https://github.com/galaxyproject/galaxy/commit/0875b8e65d6d5d7130c829ec8e5b… Author: Björn Grüning <bjoern(a)gruenings.eu> Date: 2018-04-28 (Sat, 28 Apr 2018) Changed paths: M lib/galaxy/tools/xsd/galaxy.xsd Log Message: ----------- fix bowtie2 link

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[galaxyproject/usegalaxy-playbook] ebf920: Add nate01.galaxyproject.org for testing
by GitHub 27 Apr '18

27 Apr '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: ebf9208ccccac690a9f73ba3691b682ebf726845 https://github.com/galaxyproject/usegalaxy-playbook/commit/ebf9208ccccac690… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-04-27 (Fri, 27 Apr 2018) Changed paths: M env/test/group_vars/dbservers/vault.yml M env/test/group_vars/webservers/vars.yml A env/test/templates/nginx/nate01.j2 Log Message: ----------- Add nate01.galaxyproject.org for testing

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[galaxyproject/usegalaxy-playbook] 33db7b: Update common roles for bug
by GitHub 27 Apr '18

27 Apr '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 33db7b7b9aea291f1bede9b3df43eba4ba11f27b https://github.com/galaxyproject/usegalaxy-playbook/commit/33db7b7b9aea291f… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-04-27 (Fri, 27 Apr 2018) Changed paths: M common_roles Log Message: ----------- Update common roles for bug

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[galaxyproject/infrastructure-playbook] 660f95: Update common roles for bug
by GitHub 27 Apr '18

27 Apr '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 660f95dc945e1ed1638b873d89a776d5f8f23c88 https://github.com/galaxyproject/infrastructure-playbook/commit/660f95dc945… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-04-27 (Fri, 27 Apr 2018) Changed paths: M common_roles Log Message: ----------- Update common roles for bug

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[galaxyproject/usegalaxy-playbook] 29b557: Update common roles and update for crontabs inheri...
by GitHub 27 Apr '18

27 Apr '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 29b55788c132b7da81fbaf0e64585c29968e5f98 https://github.com/galaxyproject/usegalaxy-playbook/commit/29b55788c132b7da… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-04-27 (Fri, 27 Apr 2018) Changed paths: M common_roles M env/main/host_vars/galaxy-web-05.tacc.utexas.edu.yml M env/test/host_vars/galaxy07.tacc.utexas.edu.yml M env/testtoolshed/group_vars/toolshedservers/vars.yml M env/toolshed/group_vars/toolshedservers/vars.yml Log Message: ----------- Update common roles and update for crontabs inheritance chain

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[galaxyproject/infrastructure-playbook] 132787: Update common roles
by GitHub 27 Apr '18

27 Apr '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 13278787f1b6a79a3cbd71bf89f5ae5997c60119 https://github.com/galaxyproject/infrastructure-playbook/commit/13278787f1b… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-04-27 (Fri, 27 Apr 2018) Changed paths: M common_roles Log Message: ----------- Update common roles Commit: 7da3234b2472fef8dc725870351728c180ff3d5f https://github.com/galaxyproject/infrastructure-playbook/commit/7da3234b247… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-04-27 (Fri, 27 Apr 2018) Changed paths: M env/galaxy/group_vars/jenkinsservers/vars.yml M env/galaxy/host_vars/orval.galaxyproject.org/vars.yml M env/galaxy/host_vars/westvleteren.galaxyproject.org/vars.yml M env/jsiu/group_vars/controllers.yml M env/jstacc/group_vars/controllers.yml M env/tacc/group_vars/galaxyservers.yml M env/tacc/group_vars/slurmservers.yml M env/tacc/group_vars/statsservers/vars.yml Log Message: ----------- Update for crontabs role changes and disable mailoom for now Compare: https://github.com/galaxyproject/infrastructure-playbook/compare/3f7c1e49dc…

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[galaxyproject/usegalaxy-playbook] 871b55: update TTS
by GitHub 27 Apr '18

27 Apr '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 871b55824ccb22fb26ff01afb95b06adc4497fc2 https://github.com/galaxyproject/usegalaxy-playbook/commit/871b55824ccb22fb… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-04-27 (Fri, 27 Apr 2018) Changed paths: M env/testtoolshed/group_vars/toolshedservers/vars.yml Log Message: ----------- update TTS

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[galaxyproject/galaxy] 3aa01b: initial pass fixing toolshed nav structure -- need...
by GitHub 27 Apr '18

27 Apr '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 3aa01b060477fe3fe0f59c73ca3ee75605e08182 https://github.com/galaxyproject/galaxy/commit/3aa01b060477fe3fe0f59c73ca3e… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-04-24 (Tue, 24 Apr 2018) Changed paths: M templates/webapps/tool_shed/base_panels.mako Log Message: ----------- initial pass fixing toolshed nav structure -- need to follow up on dependencies Commit: 4d66d8025107bbeba5cf15ac5f177d600d7bf2d1 https://github.com/galaxyproject/galaxy/commit/4d66d8025107bbeba5cf15ac5f17… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-04-25 (Wed, 25 Apr 2018) Changed paths: M client/galaxy/scripts/apps/extended.js M client/galaxy/scripts/toolshed/groups/group-list-view.js M client/yarn.lock M templates/webapps/tool_shed/base_panels.mako Log Message: ----------- Fixes to toolshed/menu for BS4 Commit: cbaff1dca2e34cd869227844a04a761332a7eb27 https://github.com/galaxyproject/galaxy/commit/cbaff1dca2e34cd869227844a04a… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-04-27 (Fri, 27 Apr 2018) Changed paths: M doc/source/admin/scaling.md Log Message: ----------- Correct uWSGI UNIX domain socket syntax. Commit: 352ba5f634ff5469039afa4cb6ec5b6fecabe6c6 https://github.com/galaxyproject/galaxy/commit/352ba5f634ff5469039afa4cb6ec… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-04-27 (Fri, 27 Apr 2018) Changed paths: M client/galaxy/scripts/mvc/upload/upload-button.js Log Message: ----------- show tooltip only on hover for upload button Commit: 5265e93be9fc2cf8c65400d8c1853169377868a9 https://github.com/galaxyproject/galaxy/commit/5265e93be9fc2cf8c65400d8c185… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-04-27 (Fri, 27 Apr 2018) Changed paths: M client/galaxy/scripts/mvc/history/history-view-edit.js M client/galaxy/scripts/mvc/history/history-view.js Log Message: ----------- move some tooltips to the top so they don't interfere with other actions when shown Commit: 20e9e0a018967e413380728275b843615ba0c6f4 https://github.com/galaxyproject/galaxy/commit/20e9e0a018967e413380728275b8… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-04-27 (Fri, 27 Apr 2018) Changed paths: M templates/webapps/tool_shed/base_panels.mako Log Message: ----------- Format 'logged in as' correctly for the toolshed Commit: 103cb51ec368438642504c3f98b76c363db478bb https://github.com/galaxyproject/galaxy/commit/103cb51ec368438642504c3f98b7… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-04-27 (Fri, 27 Apr 2018) Changed paths: M doc/source/admin/scaling.md Log Message: ----------- Merge pull request #6003 from natefoo/uwsgi-socket-docs [18.01] Correct uWSGI UNIX domain socket syntax in docs Commit: bf0543743ff832375e1b7128bdaa4fc5b0714038 https://github.com/galaxyproject/galaxy/commit/bf0543743ff832375e1b7128bdaa… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-04-27 (Fri, 27 Apr 2018) Changed paths: M client/galaxy/scripts/mvc/history/history-view-edit.js M client/galaxy/scripts/mvc/history/history-view.js M client/galaxy/scripts/mvc/upload/upload-button.js Log Message: ----------- Merge remote-tracking branch 'martenson/tooltip-ux' into release_18.05 Commit: 3a45c1617a0f2b24c6cea344a30aab51c36947ce https://github.com/galaxyproject/galaxy/commit/3a45c1617a0f2b24c6cea344a30a… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-04-27 (Fri, 27 Apr 2018) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue M client/galaxy/scripts/mvc/history/history-view-edit.js M client/galaxy/scripts/mvc/history/history-view.js M client/galaxy/scripts/mvc/ui/ui-modal.js M client/yarn.lock Log Message: ----------- Client build/format on merge to 18.05 Commit: 4a7bc238a6ed80d3e2791bd567e5f2c0e8edb3a8 https://github.com/galaxyproject/galaxy/commit/4a7bc238a6ed80d3e2791bd567e5… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-04-27 (Fri, 27 Apr 2018) Changed paths: M client/galaxy/scripts/apps/extended.js M client/galaxy/scripts/toolshed/groups/group-list-view.js M templates/webapps/tool_shed/base_panels.mako Log Message: ----------- Merge pull request #5979 from dannon/fix_toolshed_nav Fix toolshed nav for BS4 Commit: 916078beb0b5936644e666dc91b6c99e8f6aab35 https://github.com/galaxyproject/galaxy/commit/916078beb0b5936644e666dc91b6… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-04-27 (Fri, 27 Apr 2018) Changed paths: M doc/source/admin/scaling.md Log Message: ----------- Merge branch 'release_18.01' into release_18.05 Commit: acc9889815460b7f7ac4652e226e9f9209f8fc9d https://github.com/galaxyproject/galaxy/commit/acc9889815460b7f7ac4652e226e… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-04-27 (Fri, 27 Apr 2018) Changed paths: M client/galaxy/scripts/apps/extended.js M client/galaxy/scripts/components/RuleCollectionBuilder.vue M client/galaxy/scripts/mvc/history/history-view-edit.js M client/galaxy/scripts/mvc/history/history-view.js M client/galaxy/scripts/mvc/ui/ui-modal.js M client/galaxy/scripts/mvc/upload/upload-button.js M client/galaxy/scripts/toolshed/groups/group-list-view.js M client/yarn.lock M doc/source/admin/scaling.md M templates/webapps/tool_shed/base_panels.mako Log Message: ----------- Merge branch 'release_18.05' into dev Compare: https://github.com/galaxyproject/galaxy/compare/6a8c4dc7e287...acc988981546

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[galaxyproject/galaxy] cbaff1: Correct uWSGI UNIX domain socket syntax.
by GitHub 27 Apr '18

27 Apr '18

Branch: refs/heads/release_18.05 Home: https://github.com/galaxyproject/galaxy Commit: cbaff1dca2e34cd869227844a04a761332a7eb27 https://github.com/galaxyproject/galaxy/commit/cbaff1dca2e34cd869227844a04a… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-04-27 (Fri, 27 Apr 2018) Changed paths: M doc/source/admin/scaling.md Log Message: ----------- Correct uWSGI UNIX domain socket syntax. Commit: 103cb51ec368438642504c3f98b76c363db478bb https://github.com/galaxyproject/galaxy/commit/103cb51ec368438642504c3f98b7… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-04-27 (Fri, 27 Apr 2018) Changed paths: M doc/source/admin/scaling.md Log Message: ----------- Merge pull request #6003 from natefoo/uwsgi-socket-docs [18.01] Correct uWSGI UNIX domain socket syntax in docs Commit: 916078beb0b5936644e666dc91b6c99e8f6aab35 https://github.com/galaxyproject/galaxy/commit/916078beb0b5936644e666dc91b6… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-04-27 (Fri, 27 Apr 2018) Changed paths: M doc/source/admin/scaling.md Log Message: ----------- Merge branch 'release_18.01' into release_18.05 Compare: https://github.com/galaxyproject/galaxy/compare/4a7bc238a6ed...916078beb0b5

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[galaxyproject/galaxy] 3aa01b: initial pass fixing toolshed nav structure -- need...
by GitHub 27 Apr '18

27 Apr '18

Branch: refs/heads/release_18.05 Home: https://github.com/galaxyproject/galaxy Commit: 3aa01b060477fe3fe0f59c73ca3ee75605e08182 https://github.com/galaxyproject/galaxy/commit/3aa01b060477fe3fe0f59c73ca3e… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-04-24 (Tue, 24 Apr 2018) Changed paths: M templates/webapps/tool_shed/base_panels.mako Log Message: ----------- initial pass fixing toolshed nav structure -- need to follow up on dependencies Commit: 4d66d8025107bbeba5cf15ac5f177d600d7bf2d1 https://github.com/galaxyproject/galaxy/commit/4d66d8025107bbeba5cf15ac5f17… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-04-25 (Wed, 25 Apr 2018) Changed paths: M client/galaxy/scripts/apps/extended.js M client/galaxy/scripts/toolshed/groups/group-list-view.js M client/yarn.lock M templates/webapps/tool_shed/base_panels.mako Log Message: ----------- Fixes to toolshed/menu for BS4 Commit: 20e9e0a018967e413380728275b843615ba0c6f4 https://github.com/galaxyproject/galaxy/commit/20e9e0a018967e413380728275b8… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-04-27 (Fri, 27 Apr 2018) Changed paths: M templates/webapps/tool_shed/base_panels.mako Log Message: ----------- Format 'logged in as' correctly for the toolshed Commit: 4a7bc238a6ed80d3e2791bd567e5f2c0e8edb3a8 https://github.com/galaxyproject/galaxy/commit/4a7bc238a6ed80d3e2791bd567e5… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-04-27 (Fri, 27 Apr 2018) Changed paths: M client/galaxy/scripts/apps/extended.js M client/galaxy/scripts/toolshed/groups/group-list-view.js M templates/webapps/tool_shed/base_panels.mako Log Message: ----------- Merge pull request #5979 from dannon/fix_toolshed_nav Fix toolshed nav for BS4 Compare: https://github.com/galaxyproject/galaxy/compare/3a45c1617a0f...4a7bc238a6ed

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