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[galaxyproject/infrastructure-playbook] cce100: Move taccenv to env/tacc
by GitHub 13 Apr '18

13 Apr '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: cce10053db47c04f4a88118332ece417f246a39e https://github.com/galaxyproject/infrastructure-playbook/commit/cce10053db4… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-04-13 (Fri, 13 Apr 2018) Changed paths: A env/tacc/files/galaxy/cancelled.sh A env/tacc/files/monitoring/mailoom.py A env/tacc/files/slurm/spartbalance A env/tacc/files/ssl A env/tacc/group_vars/all.yml A env/tacc/group_vars/baseenv A env/tacc/group_vars/dockerclients.yml A env/tacc/group_vars/galaxynodes.yml A env/tacc/group_vars/galaxyservers.yml A env/tacc/group_vars/maingalaxyservers/vars.yml A env/tacc/group_vars/maingalaxyservers/vault.yml A env/tacc/group_vars/rabbitmqservers/vars.yml A env/tacc/group_vars/rabbitmqservers/vault.yml A env/tacc/group_vars/slurmclients.yml A env/tacc/group_vars/slurmdbdservers/vars.yml A env/tacc/group_vars/slurmdbdservers/vault.yml A env/tacc/group_vars/slurmservers.yml A env/tacc/group_vars/sslservers A env/tacc/group_vars/statsservers.yml A env/tacc/group_vars/testgalaxyservers/vars.yml A env/tacc/group_vars/testgalaxyservers/vault.yml A env/tacc/host_vars/galaxy-db-02.tacc.utexas.edu/vars.yml A env/tacc/host_vars/galaxy-db-02.tacc.utexas.edu/vault.yml A env/tacc/host_vars/galaxy04.tacc.utexas.edu.yml A env/tacc/host_vars/galaxy06.tacc.utexas.edu.yml A env/tacc/host_vars/galaxy07.tacc.utexas.edu.yml A env/tacc/inventory A env/tacc/playbook.yml A env/tacc/secret_group_vars/dockersslclients.yml A env/tacc/secret_group_vars/slurmclients.yml A env/tacc/secret_group_vars/sslwebservers.yml A env/tacc/secret_group_vars/stats.yml A env/tacc/secret_host_vars/default.yml A env/tacc/secret_host_vars/galaxy04.tacc.utexas.edu.yml A env/tacc/templates/nginx/galaxy-installers.j2 A env/tacc/templates/nginx/sentry.j2 A env/tacc/templates/nginx/stats.j2 A env/tacc/templates/slurm/slurm.conf.j2 A env/tacc/templates/supervisor/sentry.j2 A env/tacc/templates/supervisor/stats.j2 R taccenv/files/galaxy/cancelled.sh R taccenv/files/monitoring/mailoom.py R taccenv/files/slurm/spartbalance R taccenv/files/ssl R taccenv/group_vars/all.yml R taccenv/group_vars/baseenv R taccenv/group_vars/dockerclients.yml R taccenv/group_vars/galaxynodes.yml R taccenv/group_vars/galaxyservers.yml R taccenv/group_vars/maingalaxyservers/vars.yml R taccenv/group_vars/maingalaxyservers/vault.yml R taccenv/group_vars/rabbitmqservers/vars.yml R taccenv/group_vars/rabbitmqservers/vault.yml R taccenv/group_vars/slurmclients.yml R taccenv/group_vars/slurmdbdservers/vars.yml R taccenv/group_vars/slurmdbdservers/vault.yml R taccenv/group_vars/slurmservers.yml R taccenv/group_vars/sslservers R taccenv/group_vars/statsservers.yml R taccenv/group_vars/testgalaxyservers/vars.yml R taccenv/group_vars/testgalaxyservers/vault.yml R taccenv/host_vars/galaxy-db-02.tacc.utexas.edu/vars.yml R taccenv/host_vars/galaxy-db-02.tacc.utexas.edu/vault.yml R taccenv/host_vars/galaxy04.tacc.utexas.edu.yml R taccenv/host_vars/galaxy06.tacc.utexas.edu.yml R taccenv/host_vars/galaxy07.tacc.utexas.edu.yml R taccenv/inventory R taccenv/playbook.yml R taccenv/secret_group_vars/dockersslclients.yml R taccenv/secret_group_vars/slurmclients.yml R taccenv/secret_group_vars/sslwebservers.yml R taccenv/secret_group_vars/stats.yml R taccenv/secret_host_vars/default.yml R taccenv/secret_host_vars/galaxy04.tacc.utexas.edu.yml R taccenv/templates/nginx/galaxy-installers.j2 R taccenv/templates/nginx/sentry.j2 R taccenv/templates/nginx/stats.j2 R taccenv/templates/slurm/slurm.conf.j2 R taccenv/templates/supervisor/sentry.j2 R taccenv/templates/supervisor/stats.j2 Log Message: ----------- Move taccenv to env/tacc Commit: 264d07af3d765dcd6c97f27fc20c91700fc81b1c https://github.com/galaxyproject/infrastructure-playbook/commit/264d07af3d7… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-04-13 (Fri, 13 Apr 2018) Changed paths: M env/tacc/files/ssl M env/tacc/group_vars/baseenv M env/tacc/group_vars/sslservers Log Message: ----------- Fix symlinks broken by move Commit: dde2217e106444fc771370458a6f87d5fe8e5d70 https://github.com/galaxyproject/infrastructure-playbook/commit/dde2217e106… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-04-13 (Fri, 13 Apr 2018) Changed paths: R env/tacc/group_vars/slurmclients.yml A env/tacc/group_vars/slurmclients/vars.yml A env/tacc/group_vars/slurmclients/vault.yml A env/tacc/group_vars/stats/vars.yml A env/tacc/group_vars/stats/vault.yml R env/tacc/host_vars/galaxy04.tacc.utexas.edu.yml A env/tacc/host_vars/galaxy04.tacc.utexas.edu/vars.yml A env/tacc/host_vars/galaxy04.tacc.utexas.edu/vault.yml M env/tacc/playbook.yml R env/tacc/secret_group_vars/dockersslclients.yml R env/tacc/secret_group_vars/slurmclients.yml R env/tacc/secret_group_vars/sslwebservers.yml R env/tacc/secret_group_vars/stats.yml R env/tacc/secret_host_vars/default.yml R env/tacc/secret_host_vars/galaxy04.tacc.utexas.edu.yml Log Message: ----------- Remove secret_*_vars from tacc env Compare: https://github.com/galaxyproject/infrastructure-playbook/compare/fa3ed84610…

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[galaxyproject/galaxy] ed95d9: Check tool version when importing subworkflows fro...
by GitHub 13 Apr '18

13 Apr '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: ed95d9f40b83b44959030d70b7b5157ee0714b08 https://github.com/galaxyproject/galaxy/commit/ed95d9f40b83b44959030d70b7b5… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-03-31 (Sat, 31 Mar 2018) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Check tool version when importing subworkflows from dictionary Commit: d9a755082281669c64b0c8ae02655fdd3039fa0d https://github.com/galaxyproject/galaxy/commit/d9a755082281669c64b0c8ae0265… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-03-31 (Sat, 31 Mar 2018) Changed paths: M lib/galaxy/web/base/controller.py M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/workflow/modules.py Log Message: ----------- Always match exact tool version Commit: 6fbf0e38cc8eb936cbdc0aa5eb22549793151b0f https://github.com/galaxyproject/galaxy/commit/6fbf0e38cc8eb936cbdc0aa5eb22… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-03-31 (Sat, 31 Mar 2018) Changed paths: M lib/galaxy/managers/workflows.py M lib/galaxy/workflow/modules.py Log Message: ----------- Allow upgrade when workflow is loaded into editor Commit: cd3a637325d2921ca45f7f370f1bf2087cb99f09 https://github.com/galaxyproject/galaxy/commit/cd3a637325d2921ca45f7f370f1b… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-03-31 (Sat, 31 Mar 2018) Changed paths: M lib/galaxy/managers/workflows.py M lib/galaxy/workflow/modules.py Log Message: ----------- Allow tool version upgrade for the run form Commit: 160b618759b5bf288cf11b7cdf99372fe2961a36 https://github.com/galaxyproject/galaxy/commit/160b618759b5bf288cf11b7cdf99… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-03-31 (Sat, 31 Mar 2018) Changed paths: M lib/galaxy/workflow/modules.py Log Message: ----------- Remove redundant default for tool version flag Commit: e362ea5a1623e4bbade583c6439456b2ebf475bf https://github.com/galaxyproject/galaxy/commit/e362ea5a1623e4bbade583c64394… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-03-31 (Sat, 31 Mar 2018) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Return proper error message if module cannot be produced Commit: c320e777a91e2ca3688d5a92ce28f5b744d87ccf https://github.com/galaxyproject/galaxy/commit/c320e777a91e2ca3688d5a92ce28… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-03-31 (Sat, 31 Mar 2018) Changed paths: M lib/galaxy/tools/parameters/grouping.py Log Message: ----------- Add additional check for section handler Commit: bd7a71c7fa89f4f798387cb65524faeff7fd2c5f https://github.com/galaxyproject/galaxy/commit/bd7a71c7fa89f4f798387cb65524… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-03-31 (Sat, 31 Mar 2018) Changed paths: M lib/galaxy/tools/parameters/grouping.py Log Message: ----------- Apply consistent group value handling Commit: 028d07323d93f900cdca45a67533cb5a2ddc4795 https://github.com/galaxyproject/galaxy/commit/028d07323d93f900cdca45a67533… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-03-31 (Sat, 31 Mar 2018) Changed paths: M test/unit/workflows/test_modules.py Log Message: ----------- Adjust test case Commit: b0d867efa352fb4c82535efadf0666757c530eec https://github.com/galaxyproject/galaxy/commit/b0d867efa352fb4c82535efadf06… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-13 (Fri, 13 Apr 2018) Changed paths: M lib/galaxy/managers/workflows.py M lib/galaxy/tools/parameters/grouping.py M lib/galaxy/web/base/controller.py M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/workflow/modules.py M test/unit/workflows/test_modules.py Log Message: ----------- Merge pull request #5821 from guerler/exact_version_handling Avoid silent tool upgrades during workflow imports Compare: https://github.com/galaxyproject/galaxy/compare/eb67d422ef64...b0d867efa352

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[galaxyproject/galaxy] 8b3fe2: Refactor rules def toward reuse outside RuleCollec...
by GitHub 13 Apr '18

13 Apr '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 8b3fe214763341ffa0a1b614a464de5b9b8561b7 https://github.com/galaxyproject/galaxy/commit/8b3fe214763341ffa0a1b614a464… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-06 (Fri, 06 Apr 2018) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue A client/galaxy/scripts/mvc/rules/rule-definitions.js Log Message: ----------- Refactor rules def toward reuse outside RuleCollectionBuilder.vue. Commit: 47795ea707fcb3575aa823ea143691b53e795c8d https://github.com/galaxyproject/galaxy/commit/47795ea707fcb3575aa823ea1436… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-06 (Fri, 06 Apr 2018) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue M client/galaxy/scripts/mvc/collection/list-collection-creator.js Log Message: ----------- Cleanup rule UI code, refactor toward use w/existing collections. Commit: 595c7621419d457587c486d2c05b60ccf35fbb5d https://github.com/galaxyproject/galaxy/commit/595c7621419d457587c486d2c05b… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-06 (Fri, 06 Apr 2018) Changed paths: M client/galaxy/scripts/mvc/upload/collection/rules-input-view.js Log Message: ----------- Add reset and close buttons for upload widget when selecting rules. Commit: 109e97d82ad9d578966ed98a051f0dce6aeb1682 https://github.com/galaxyproject/galaxy/commit/109e97d82ad9d578966ed98a051f… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-06 (Fri, 06 Apr 2018) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue Log Message: ----------- Rules editor - add X to column definitions inside edit mode. Previously these were only available in preview mode. Commit: d12635375aac0008d987ab71aedfc5a24b115663 https://github.com/galaxyproject/galaxy/commit/d12635375aac0008d987ab71aedf… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-06 (Fri, 06 Apr 2018) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue Log Message: ----------- Improve styling, wording of rule editor buttons. - Replace "Okay" with "Apply" on button labels. - Create CSS style for buttons in rule editor part of the component. - More consistency - right-align all the buttons, more consistent spacing. - Make primary action that button blue to make the buttons look a little bland. Commit: 2254dba7342040c86d28b2c97153d253fe175791 https://github.com/galaxyproject/galaxy/commit/2254dba7342040c86d28b2c97153… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-06 (Fri, 06 Apr 2018) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue Log Message: ----------- Bug fix for conditional rule button rendering... Commit: c34b23b428898f0da5657d96fd048969829d0a91 https://github.com/galaxyproject/galaxy/commit/c34b23b428898f0da5657d96fd04… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-06 (Fri, 06 Apr 2018) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue Log Message: ----------- Rule builder - more correct, better abstracted logic for display name input. Commit: b3f589cc9349be2e583f2f085c1d2f696d087d80 https://github.com/galaxyproject/galaxy/commit/b3f589cc9349be2e583f2f085c1d… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-07 (Sat, 07 Apr 2018) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue M client/galaxy/scripts/mvc/rules/rule-definitions.js M client/package.json M client/yarn.lock M test-data/rules/uniprot.json M test/selenium_tests/test_uploads.py Log Message: ----------- For rule builder, use Python-like regular expressions in-browser. Leverages the [pyre-to-regexp](https://github.com/jmchilton/pyre-to-regexp) that I recently published for this purpose. Commit: c520bb400c2a75270c87896b155d24fc574ef7d5 https://github.com/galaxyproject/galaxy/commit/c520bb400c2a75270c87896b155d… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-07 (Sat, 07 Apr 2018) Changed paths: M client/galaxy/scripts/mvc/rules/rule-definitions.js Log Message: ----------- Type fix for JS rule builder code. Commit: eb67d422ef644cb43c3d66d02c86fd1d5ee41e0a https://github.com/galaxyproject/galaxy/commit/eb67d422ef644cb43c3d66d02c86… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-04-13 (Fri, 13 Apr 2018) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue M client/galaxy/scripts/mvc/collection/list-collection-creator.js A client/galaxy/scripts/mvc/rules/rule-definitions.js M client/galaxy/scripts/mvc/upload/collection/rules-input-view.js M client/package.json M client/yarn.lock M test-data/rules/uniprot.json M test/selenium_tests/test_uploads.py Log Message: ----------- Merge pull request #5823 from jmchilton/rule_tweaks Various Improvements for the Rule Builder Widget Compare: https://github.com/galaxyproject/galaxy/compare/6e16b776df30...eb67d422ef64

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[galaxyproject/galaxy] 2cc650: More, better workflow editor Selenium tests - part...
by GitHub 13 Apr '18

13 Apr '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 2cc650078d3a9fc92355ba2dd326287fabe009a6 https://github.com/galaxyproject/galaxy/commit/2cc650078d3a9fc92355ba2dd326… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-12 (Thu, 12 Apr 2018) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-connector.js M client/galaxy/scripts/mvc/workflow/workflow-view-terminals.js M templates/base/base_panels.mako M templates/webapps/galaxy/galaxy.panels.mako M test/api/test_workflows.py A test/base/workflow_fixtures.py M test/galaxy_selenium/navigation.yml R test/selenium_tests/_workflow_fixtures.py M test/selenium_tests/test_workflow_editor.py M test/selenium_tests/test_workflow_run.py Log Message: ----------- More, better workflow editor Selenium tests - part 2. - More stuff tested: - Connecting and disconnecting simple terminals as well as mapping terminals (ribbons). - Rendering simple workflows, workflow with output collections, workflow with mapping, and workflow with a subworkflow. - Collapsing side panels in the workflow editor. - Small tweaks to editor DOM. - More screenshots. Commit: 6e16b776df306d4f04c4bcf3ec523f53986a4bc8 https://github.com/galaxyproject/galaxy/commit/6e16b776df306d4f04c4bcf3ec52… Author: Dannon <dannon.baker(a)gmail.com> Date: 2018-04-13 (Fri, 13 Apr 2018) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-connector.js M client/galaxy/scripts/mvc/workflow/workflow-view-terminals.js M templates/base/base_panels.mako M templates/webapps/galaxy/galaxy.panels.mako M test/api/test_workflows.py A test/base/workflow_fixtures.py M test/galaxy_selenium/navigation.yml R test/selenium_tests/_workflow_fixtures.py M test/selenium_tests/test_workflow_editor.py M test/selenium_tests/test_workflow_run.py Log Message: ----------- Merge pull request #5882 from jmchilton/editor_tests_2 More, better workflow editor Selenium tests - part 2. Compare: https://github.com/galaxyproject/galaxy/compare/1bc1720ea8a0...6e16b776df30

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[galaxyproject/galaxy] 2cec29: Update cluster config docs for virtualenv issue fo...
by GitHub 12 Apr '18

12 Apr '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 2cec29c043f6a57e7abc74149b928d990ef2364e https://github.com/galaxyproject/galaxy/commit/2cec29c043f6a57e7abc74149b92… Author: Oleksandr Moskalenko <om(a)rc.ufl.edu> Date: 2018-04-12 (Thu, 12 Apr 2018) Changed paths: M doc/source/admin/cluster.md Log Message: ----------- Update cluster config docs for virtualenv issue for drmaa real user jobs. Commit: 1bc1720ea8a0c55628201a91f8496f6df588e90f https://github.com/galaxyproject/galaxy/commit/1bc1720ea8a0c55628201a91f849… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-04-12 (Thu, 12 Apr 2018) Changed paths: M doc/source/admin/cluster.md Log Message: ----------- Merge pull request #5881 from moskalenko/doc Update cluster docs for virtualenv issue in drmaa real user jobs Compare: https://github.com/galaxyproject/galaxy/compare/1583db76ebeb...1bc1720ea8a0

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[galaxyproject/infrastructure-playbook] 346402: Fix squid conf for cvmfs1-psu0 localhost (cvmfs_se...
by GitHub 12 Apr '18

12 Apr '18

Branch: refs/heads/galaxyenv Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 346402da28015558326dbb1f8c3ec1ca678538b1 https://github.com/galaxyproject/infrastructure-playbook/commit/346402da280… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-04-12 (Thu, 12 Apr 2018) Changed paths: M env/galaxy/templates/squid/cvmfs1-psu0_squid.conf.j2 Log Message: ----------- Fix squid conf for cvmfs1-psu0 localhost (cvmfs_server) access

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[galaxyproject/usegalaxy-playbook] a6bd07: Updated plant_tribes_gene_family_classifier for ne...
by GitHub 12 Apr '18

12 Apr '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: a6bd075e83b667b0f13f1d65531b1870866eff58 https://github.com/galaxyproject/usegalaxy-playbook/commit/a6bd075e83b667b0… Author: Dave B <dave(a)bx.psu.edu> Date: 2018-04-12 (Thu, 12 Apr 2018) Changed paths: M env/test/files/galaxy/var/shed_tool_conf.xml M env/test/files/galaxy/var/shed_tool_data_table_conf.xml Log Message: ----------- Updated plant_tribes_gene_family_classifier for new dependencies.

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[galaxyproject/galaxy] fa1231: Minor build fixes.
by GitHub 12 Apr '18

12 Apr '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: fa1231e9ec162df80442432c36ed1cb8b8ab2d42 https://github.com/galaxyproject/galaxy/commit/fa1231e9ec162df80442432c36ed… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-11 (Wed, 11 Apr 2018) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-connector.js M test/selenium_tests/test_workflow_editor.py Log Message: ----------- Minor build fixes. Fix qunit issue and linting issue introduced with #5876. Commit: 1583db76ebebbcecf67dbf334dc1b24f5748b382 https://github.com/galaxyproject/galaxy/commit/1583db76ebebbcecf67dbf334dc1… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2018-04-12 (Thu, 12 Apr 2018) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-connector.js M test/selenium_tests/test_workflow_editor.py Log Message: ----------- Merge pull request #5878 from jmchilton/fixbuild Minor build fixes. Compare: https://github.com/galaxyproject/galaxy/compare/acff3b2e9555...1583db76ebeb

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[galaxyproject/galaxy] 79f664: More, better workflow editor Selenium tests.
by GitHub 12 Apr '18

12 Apr '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 79f664aa4e482d81ae3392f6cc0a9c927a144518 https://github.com/galaxyproject/galaxy/commit/79f664aa4e482d81ae3392f6cc0a… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-11 (Wed, 11 Apr 2018) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-connector.js M client/galaxy/scripts/mvc/workflow/workflow-manager.js M client/galaxy/scripts/mvc/workflow/workflow-view-node.js M client/galaxy/scripts/mvc/workflow/workflow-view-terminals.js M client/galaxy/scripts/mvc/workflow/workflow-view.js M templates/webapps/galaxy/workflow/editor.mako M test/base/workflows_format_2/main.py M test/galaxy_selenium/components.py M test/galaxy_selenium/navigates_galaxy.py M test/galaxy_selenium/navigation.yml M test/galaxy_selenium/smart_components.py M test/selenium_tests/test_workflow_editor.py Log Message: ----------- More, better workflow editor Selenium tests. - More stuff tested: - Setting input name and annotation, saving, reloading. - Simple tests for collection inputs in addition to data inputs. - A simple workflow renders its connections. - More screenshots. - Expanded use of navigation.yml for abstraction description of elements. - More abstractions for probing the workflow in the editor - should serve as a basis for additional tests. - Decorate editor DOM to allow finding elements in reproducible ways (enables testing, but should help with tours as well). - Make editor tests more robust by: - Doing more appropriate waiting, instead of adding sleeps for jQuery interactions. - Not assuming each test occurs with a fresh user (and hence workflow list). Commit: acff3b2e9555c042cfcaa2e6c798b0ecd74d0449 https://github.com/galaxyproject/galaxy/commit/acff3b2e9555c042cfcaa2e6c798… Author: Dannon <dannon.baker(a)gmail.com> Date: 2018-04-11 (Wed, 11 Apr 2018) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-connector.js M client/galaxy/scripts/mvc/workflow/workflow-manager.js M client/galaxy/scripts/mvc/workflow/workflow-view-node.js M client/galaxy/scripts/mvc/workflow/workflow-view-terminals.js M client/galaxy/scripts/mvc/workflow/workflow-view.js M templates/webapps/galaxy/workflow/editor.mako M test/base/workflows_format_2/main.py M test/galaxy_selenium/components.py M test/galaxy_selenium/navigates_galaxy.py M test/galaxy_selenium/navigation.yml M test/galaxy_selenium/smart_components.py M test/selenium_tests/test_workflow_editor.py Log Message: ----------- Merge pull request #5876 from jmchilton/editor_tests More, better workflow editor Selenium tests. Compare: https://github.com/galaxyproject/galaxy/compare/6ee1c44df765...acff3b2e9555

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[galaxyproject/galaxy] 4e8e6a: add link to ftp help to upload modal
by GitHub 11 Apr '18

11 Apr '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 4e8e6a8f01219ef17409a5efe925ca07358939f3 https://github.com/galaxyproject/galaxy/commit/4e8e6a8f01219ef17409a5efe925… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-03-29 (Thu, 29 Mar 2018) Changed paths: M client/galaxy/scripts/mvc/upload/upload-ftp.js Log Message: ----------- add link to ftp help to upload modal Commit: aae2f1d85c0b3b81ebdd943685945b4204d6dba8 https://github.com/galaxyproject/galaxy/commit/aae2f1d85c0b3b81ebdd94368594… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-03-30 (Fri, 30 Mar 2018) Changed paths: M client/galaxy/scripts/mvc/upload/upload-ftp.js M lib/galaxy/managers/configuration.py Log Message: ----------- add note to FTP upload modal when oidc is enabled Commit: fe78b5bd89a90b49de5cd95e7ee660296c95dc16 https://github.com/galaxyproject/galaxy/commit/fe78b5bd89a90b49de5cd95e7ee6… Author: vjalili <jalili.vahid(a)gmail.com> Date: 2018-03-30 (Fri, 30 Mar 2018) Changed paths: M client/galaxy/scripts/mvc/upload/upload-ftp.js Log Message: ----------- Some updates to FTP-upload messages w.r.t OIDC-based log-ins. Commit: 6bb404e7a6ff7485bb528f16692d13f916490a3b https://github.com/galaxyproject/galaxy/commit/6bb404e7a6ff7485bb528f16692d… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-04-10 (Tue, 10 Apr 2018) Changed paths: M client/galaxy/scripts/mvc/upload/upload-ftp.js Log Message: ----------- Merge pull request #27 from VJalili/openid-ftp Some updates to FTP-upload messages w.r.t OIDC-based log-ins. Commit: c03b699f66ba0a96e8455cf2ac43f928385d3835 https://github.com/galaxyproject/galaxy/commit/c03b699f66ba0a96e8455cf2ac43… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-04-11 (Wed, 11 Apr 2018) Changed paths: M client/galaxy/scripts/mvc/upload/upload-ftp.js Log Message: ----------- reword Commit: 6ee1c44df765c060a8396e14c17639b4bd8d20d9 https://github.com/galaxyproject/galaxy/commit/6ee1c44df765c060a8396e14c176… Author: Dannon <dannon.baker(a)gmail.com> Date: 2018-04-11 (Wed, 11 Apr 2018) Changed paths: M client/galaxy/scripts/mvc/upload/upload-ftp.js M lib/galaxy/managers/configuration.py Log Message: ----------- Merge pull request #5814 from martenson/openid-ftp add note to FTP modal when oidc is enabled Compare: https://github.com/galaxyproject/galaxy/compare/11204b176500...6ee1c44df765

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