- galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] d648e2: fix for cases where panel elements have to_dict wi...
by GitHub 01 Mar '18

01 Mar '18

Branch: refs/heads/release_18.01 Home: https://github.com/galaxyproject/galaxy Commit: d648e22080ac97b3940799d35e3be304d1a0aed7 https://github.com/galaxyproject/galaxy/commit/d648e22080ac97b3940799d35e3b… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M lib/galaxy/tools/toolbox/base.py M lib/galaxy/tools/toolbox/panel.py Log Message: ----------- fix for cases where panel elements have to_dict with different signature we want to only cache Tools anyways, so this fixes other possible bug where section/label etc would have same id as a Tool change the detection of Tool object to avoid circular import errors Also use cache for dictifying sections, we should gain more speed from that. Commit: 5406a7153bd6a51174145d04eda26b6796211154 https://github.com/galaxyproject/galaxy/commit/5406a7153bd6a51174145d04eda2… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M lib/galaxy/tools/toolbox/base.py M lib/galaxy/tools/toolbox/panel.py Log Message: ----------- pass the toolbox obj to make sure cache is available Commit: b96fd2c74010009a7dc85c09e77f87a9d4eff271 https://github.com/galaxyproject/galaxy/commit/b96fd2c74010009a7dc85c09e77f… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M lib/galaxy/tools/toolbox/base.py M lib/galaxy/tools/toolbox/panel.py Log Message: ----------- enable cache for tools that inherit from Tool Commit: 41910f824ea311e8ce7d93e4dc03a44c75c8132b https://github.com/galaxyproject/galaxy/commit/41910f824ea311e8ce7d93e4dc03… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M lib/galaxy/tools/toolbox/base.py M lib/galaxy/tools/toolbox/panel.py Log Message: ----------- Merge pull request #5615 from martenson/distinct-elts [18.01] fix for cases where panel elements have to_dict with different signature Compare: https://github.com/galaxyproject/galaxy/compare/77d085a40f5d...41910f824ea3

1 0

[galaxyproject/galaxy] a90b88: Client-format
by GitHub 01 Mar '18

01 Mar '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: a90b889c11dbd7eb2362325cc777b71a43b0d022 https://github.com/galaxyproject/galaxy/commit/a90b889c11dbd7eb2362325cc777… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M client/galaxy/scripts/mvc/history/history-view-edit.js M client/galaxy/scripts/mvc/tool/tool-genomespace.js Log Message: ----------- Client-format Commit: 05b6d87239f1b975f823c2a00c31923f310544fe https://github.com/galaxyproject/galaxy/commit/05b6d87239f1b975f823c2a00c31… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M client/galaxy/scripts/utils/utils.js Log Message: ----------- Minor cleanup of imports, explicit conditionals in utils/utils.js Commit: 841bc4d1fa5d8c17579f5a9aaea77feef5c1a766 https://github.com/galaxyproject/galaxy/commit/841bc4d1fa5d8c17579f5a9aaea7… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M client/galaxy/scripts/utils/utils.js Log Message: ----------- Minor tweak to active dropdown toggle to only search within the masthead for dropping active class; just to avoid this accidentally manipulating other areas on the page. The following line is fine, since it selects by the (assumed) unique id. Commit: de2bfa2ccacf809342b63280e5af99db98ecb18f https://github.com/galaxyproject/galaxy/commit/de2bfa2ccacf809342b63280e5af… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M client/galaxy/scripts/mvc/history/history-view-edit.js M client/galaxy/scripts/mvc/tool/tool-genomespace.js M client/galaxy/scripts/utils/utils.js Log Message: ----------- Merge pull request #5630 from dannon/minor_tweaks_active_tab Minor tweak to active tab wrangling Compare: https://github.com/galaxyproject/galaxy/compare/3c7dd7f104b8...de2bfa2ccacf

1 0

[galaxyproject/galaxy] bb19c7: Add queryname sorted and input sorted datatypes
by GitHub 01 Mar '18

01 Mar '18

Branch: refs/heads/release_18.01 Home: https://github.com/galaxyproject/galaxy Commit: bb19c7e44844bd724ba2ad3920abd078aae083a0 https://github.com/galaxyproject/galaxy/commit/bb19c7e44844bd724ba2ad3920ab… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2018-02-22 (Thu, 22 Feb 2018) Changed paths: M config/datatypes_conf.xml.sample M lib/galaxy/datatypes/binary.py R lib/galaxy/datatypes/converters/bam_native_to_bam_converter.xml M lib/galaxy/datatypes/converters/sam_to_bam_native.xml A lib/galaxy/datatypes/converters/to_coordinate_sorted_bam.xml A lib/galaxy/datatypes/converters/to_qname_sorted_bam.xml A test-data/qname_sorted.bam M test/functional/tools/sam_to_bam_native.xml M test/functional/tools/sample_datatypes_conf.xml Log Message: ----------- Add queryname sorted and input sorted datatypes The queryname sorted datatype (BamQuerynameSorted) ensures that the file is queryname ordered. The BamInputSorted datatype can be used to describe the output of aligners, which usually keep mate pairs adjacent. The BamInputSorted datatype allows using tools that require mates to be adjacent, without requiring an explicit sorting step. This can reduce the time and space required for duplicate marking tools, HiC tools and structural variant detection tools that require mates to be grouped together in an alignment file. The BamQuerynameSorted has a converter that works for all datatypes that can be consumed by samtools. There is no converter for BamInputSorted, since BamQuerynameSorted is valid input for tools requiring BamInputSorted input. I'm targeting 18.01 since I think it would be very unfortunate if we start annotating aligners with the very loose BamNative datatype, since this datatype does not make any promises about sort order at all. This closes https://github.com/galaxyproject/galaxy/issues/5497, goes a long way towards the problems mentioned in https://github.com/galaxyproject/galaxy/issues/5496 and would make https://github.com/galaxyproject/tools-iuc/pull/1732 and https://github.com/galaxyproject/tools-iuc/pull/1591 better Commit: 77d085a40f5d5d2e131dc2fc8073e0c030599988 https://github.com/galaxyproject/galaxy/commit/77d085a40f5d5d2e131dc2fc8073… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M config/datatypes_conf.xml.sample M lib/galaxy/datatypes/binary.py R lib/galaxy/datatypes/converters/bam_native_to_bam_converter.xml M lib/galaxy/datatypes/converters/sam_to_bam_native.xml A lib/galaxy/datatypes/converters/to_coordinate_sorted_bam.xml A lib/galaxy/datatypes/converters/to_qname_sorted_bam.xml A test-data/qname_sorted.bam M test/functional/tools/sam_to_bam_native.xml M test/functional/tools/sample_datatypes_conf.xml Log Message: ----------- Merge pull request #5589 from mvdbeek/samtools_queryname_and_input_order_datatypes [18.01] Add queryname sorted and input sorted datatypes Compare: https://github.com/galaxyproject/galaxy/compare/87c70d844747...77d085a40f5d

1 0

[galaxyproject/galaxy] fcfa3c: fix highlighted workflow tab issue #4846
by GitHub 01 Mar '18

01 Mar '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: fcfa3cad89a6ed3476837f945da2e9f6c3aa3ba8 https://github.com/galaxyproject/galaxy/commit/fcfa3cad89a6ed3476837f945da2… Author: qiagu <guqiang01(a)gmail.com> Date: 2018-02-22 (Thu, 22 Feb 2018) Changed paths: M client/galaxy/scripts/layout/page.js M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/scripts/utils/utils.js Log Message: ----------- fix highlighted workflow tab issue #4846 Commit: cf65c73c9d0a34420fa1bdcaf02cd00e810c7308 https://github.com/galaxyproject/galaxy/commit/cf65c73c9d0a34420fa1bdcaf02c… Author: Qiang.Gu <36086881+qiagu(a)users.noreply.github.com> Date: 2018-02-22 (Thu, 22 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js Log Message: ----------- Update workflow.js Commit: 0c3ee287cc90abe59e5e74ea0e3d76e245082700 https://github.com/galaxyproject/galaxy/commit/0c3ee287cc90abe59e5e74ea0e3d… Author: Qiang.Gu <36086881+qiagu(a)users.noreply.github.com> Date: 2018-02-23 (Fri, 23 Feb 2018) Changed paths: M client/galaxy/scripts/layout/page.js Log Message: ----------- Update page.js Commit: c76227524c0875dcca617876c9c09534807e641a https://github.com/galaxyproject/galaxy/commit/c76227524c0875dcca617876c9c0… Author: qiagu <guqiang01(a)gmail.com> Date: 2018-02-23 (Fri, 23 Feb 2018) Changed paths: M client/galaxy/scripts/layout/page.js M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/scripts/utils/utils.js Log Message: ----------- fix workflow tab hightlight issue #4846 Commit: bc9d73c03b25b335e176dc5826d206d36ac57157 https://github.com/galaxyproject/galaxy/commit/bc9d73c03b25b335e176dc5826d2… Author: qiagu <guqiang01(a)gmail.com> Date: 2018-02-28 (Wed, 28 Feb 2018) Changed paths: M client/galaxy/scripts/layout/page.js Log Message: ----------- change to if statement Commit: 15111e5265afb62b357f302752d8e2747d25acf0 https://github.com/galaxyproject/galaxy/commit/15111e5265afb62b357f302752d8… Author: qiagu <guqiang01(a)gmail.com> Date: 2018-02-28 (Wed, 28 Feb 2018) Changed paths: M client/galaxy/scripts/layout/page.js M client/galaxy/scripts/mvc/workflow/workflow.js M lib/galaxy/auth/__init__.py M lib/galaxy/datatypes/binary.py M lib/galaxy/datatypes/util/gff_util.py M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/dependencies/requirements.txt M lib/galaxy/jobs/__init__.py M lib/galaxy/tools/toolbox/base.py M lib/galaxy/web/proxy/js/package.json M lib/galaxy/webapps/galaxy/controllers/workflow.py M run_tests.sh M test/base/populators.py M test/galaxy_selenium/navigation.yml M test/integration/test_upload_configuration_options.py M test/selenium_tests/test_jupyter.py M tools/data_source/upload.py Log Message: ----------- update Commit: 9bc7be300c8ac982a8bd73e8c624944f605c6caa https://github.com/galaxyproject/galaxy/commit/9bc7be300c8ac982a8bd73e8c624… Author: qiagu <guqiang01(a)gmail.com> Date: 2018-02-28 (Wed, 28 Feb 2018) Changed paths: M client/galaxy/scripts/mvc/grid/grid-shared.js M client/galaxy/scripts/mvc/grid/grid-view.js M client/galaxy/scripts/mvc/history/history-list.js M client/galaxy/scripts/mvc/list/list-view.js M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/scripts/ui/loading-indicator.js M lib/galaxy/actions/library.py M lib/galaxy/model/migrate/versions/0137_add_copied_from_job_id_column.py M lib/galaxy/tools/actions/upload.py M lib/galaxy/tools/actions/upload_common.py M lib/galaxy/tools/cwl/__init__.py M lib/galaxy/tools/cwl/parser.py M lib/galaxy/tools/cwl/representation.py M lib/galaxy/tools/cwl/runtime_actions.py M lib/galaxy/tools/cwl/schema.py A lib/galaxy/tools/cwl/util.py M lib/galaxy/tools/deps/commands.py M lib/galaxy/tools/deps/conda_util.py M lib/galaxy/tools/deps/containers.py M lib/galaxy/tools/deps/mulled/invfile.lua M lib/galaxy/tools/deps/mulled/mulled_build.py M lib/galaxy/tools/deps/mulled/mulled_build_files.py M lib/galaxy/tools/deps/mulled/util.py M lib/galaxy/tools/deps/requirements.py M lib/galaxy/tools/linters/command.py M lib/galaxy/tools/parameters/grouping.py M lib/galaxy/tools/parameters/output_collect.py M lib/galaxy/tools/toolbox/base.py M lib/galaxy/tools/verify/test_data.py M lib/galaxy/util/__init__.py M lib/galaxy/util/checkers.py M lib/galaxy/util/compression_utils.py M lib/galaxy/util/path/__init__.py M lib/galaxy/web/framework/helpers/grids.py M tools/data_source/upload.xml Log Message: ----------- Merge remote-tracking branch 'upstream/dev' into iss4846 update to dev Commit: 03656eeeb8df7b1c5614c6a98aeab58b1d523ee1 https://github.com/galaxyproject/galaxy/commit/03656eeeb8df7b1c5614c6a98aea… Author: qiagu <guqiang01(a)gmail.com> Date: 2018-02-28 (Wed, 28 Feb 2018) Changed paths: M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/mvc/grid/grid-view.js Log Message: ----------- fix more tabs with issue #4846 Commit: 3c7dd7f104b8438beaa03aeb4d27f4c8f1d26efb https://github.com/galaxyproject/galaxy/commit/3c7dd7f104b8438beaa03aeb4d27… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/layout/page.js M client/galaxy/scripts/mvc/grid/grid-view.js M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/scripts/utils/utils.js Log Message: ----------- Merge pull request #5593 from qiagu/iss4846 Fix active tab highlighting issue #4846 Compare: https://github.com/galaxyproject/galaxy/compare/c5affb92f901...3c7dd7f104b8

1 0

[galaxyproject/galaxy] 86f993: Remove broken write_from_stream() and set_raw_data...
by GitHub 01 Mar '18

01 Mar '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 86f993b8d831b0e6ce86d425cf673bcde278f652 https://github.com/galaxyproject/galaxy/commit/86f993b8d831b0e6ce86d425cf67… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-02-28 (Wed, 28 Feb 2018) Changed paths: M lib/galaxy/datatypes/data.py M lib/galaxy/model/__init__.py M lib/galaxy/model/migrate/versions/0005_cleanup_datasets_fix.py Log Message: ----------- Remove broken write_from_stream() and set_raw_data() methods They use `os.close()` on file handles open with `open()`. It seems they have never been used. Commit: 319454f216e6bdd24fc5e1eb7d576e5d8c769493 https://github.com/galaxyproject/galaxy/commit/319454f216e6bdd24fc5e1eb7d57… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M lib/galaxy/datatypes/assembly.py M lib/galaxy/datatypes/binary.py M lib/galaxy/datatypes/blast.py M lib/galaxy/datatypes/converters/bed_to_gff_converter.py M lib/galaxy/datatypes/converters/fasta_to_len.py M lib/galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.py M lib/galaxy/datatypes/converters/fastqsolexa_to_qual_converter.py M lib/galaxy/datatypes/converters/gff_to_bed_converter.py M lib/galaxy/datatypes/converters/interval_to_bed_converter.py M lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.py M lib/galaxy/datatypes/converters/interval_to_coverage.py M lib/galaxy/datatypes/converters/interval_to_fli.py M lib/galaxy/datatypes/converters/lped_to_fped_converter.py M lib/galaxy/datatypes/converters/maf_to_fasta_converter.py M lib/galaxy/datatypes/converters/maf_to_interval_converter.py M lib/galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.py M lib/galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.py M lib/galaxy/datatypes/converters/sam_to_bam.py M lib/galaxy/datatypes/converters/wiggle_to_simple_converter.py M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/images.py M lib/galaxy/datatypes/interval.py M lib/galaxy/datatypes/molecules.py M lib/galaxy/datatypes/msa.py M lib/galaxy/datatypes/qualityscore.py M lib/galaxy/datatypes/sequence.py M lib/galaxy/datatypes/sniff.py M lib/galaxy/datatypes/tabular.py M lib/galaxy/datatypes/text.py M lib/galaxy/datatypes/xml.py Log Message: ----------- Use with statement in lib/galaxy/datatypes/ Commit: c5affb92f901d470e8c562f64ad402b3c1d8b076 https://github.com/galaxyproject/galaxy/commit/c5affb92f901d470e8c562f64ad4… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M lib/galaxy/datatypes/assembly.py M lib/galaxy/datatypes/binary.py M lib/galaxy/datatypes/blast.py M lib/galaxy/datatypes/converters/bed_to_gff_converter.py M lib/galaxy/datatypes/converters/fasta_to_len.py M lib/galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.py M lib/galaxy/datatypes/converters/fastqsolexa_to_qual_converter.py M lib/galaxy/datatypes/converters/gff_to_bed_converter.py M lib/galaxy/datatypes/converters/interval_to_bed_converter.py M lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.py M lib/galaxy/datatypes/converters/interval_to_coverage.py M lib/galaxy/datatypes/converters/interval_to_fli.py M lib/galaxy/datatypes/converters/lped_to_fped_converter.py M lib/galaxy/datatypes/converters/maf_to_fasta_converter.py M lib/galaxy/datatypes/converters/maf_to_interval_converter.py M lib/galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.py M lib/galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.py M lib/galaxy/datatypes/converters/sam_to_bam.py M lib/galaxy/datatypes/converters/wiggle_to_simple_converter.py M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/images.py M lib/galaxy/datatypes/interval.py M lib/galaxy/datatypes/molecules.py M lib/galaxy/datatypes/msa.py M lib/galaxy/datatypes/qualityscore.py M lib/galaxy/datatypes/sequence.py M lib/galaxy/datatypes/sniff.py M lib/galaxy/datatypes/tabular.py M lib/galaxy/datatypes/text.py M lib/galaxy/datatypes/xml.py M lib/galaxy/model/__init__.py M lib/galaxy/model/migrate/versions/0005_cleanup_datasets_fix.py Log Message: ----------- Merge pull request #5623 from nsoranzo/use_with_statement Use with statement in lib/galaxy/datatypes/ Compare: https://github.com/galaxyproject/galaxy/compare/e53e90895d2e...c5affb92f901

1 0

[galaxyproject/usegalaxy-playbook] 1b50a6: Correct Pulsar stream size (it's in bytes not MB)
by GitHub 01 Mar '18

01 Mar '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 1b50a6b42fb0fb083d2e0eec729fef205603c3d6 https://github.com/galaxyproject/usegalaxy-playbook/commit/1b50a6b42fb0fb08… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M env/main/host_vars/br005.bridges.psc.edu.yml M env/main/host_vars/jetstream-iu0.galaxyproject.org.yml M env/main/host_vars/jetstream-tacc0.galaxyproject.org.yml M env/main/host_vars/login5.stampede.tacc.utexas.edu.yml M env/test/host_vars/jetstream-iu0.galaxyproject.org.yml M env/test/host_vars/jetstream-tacc0.galaxyproject.org.yml M env/test/host_vars/login5.stampede.tacc.utexas.edu.yml Log Message: ----------- Correct Pulsar stream size (it's in bytes not MB)

1 0

[galaxyproject/usegalaxy-playbook] dd343c: Move Bridges Pulsar from /pylon2 to /home
by GitHub 01 Mar '18

01 Mar '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: dd343c05db70e5ae1b1e836418bc5ec955956921 https://github.com/galaxyproject/usegalaxy-playbook/commit/dd343c05db70e5ae… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M CHANGELOG.md M env/main/host_vars/br005.bridges.psc.edu.yml M env/main/templates/galaxy/config/job_conf.xml.j2 M env/test/host_vars/br005.bridges.psc.edu.yml M env/test/templates/galaxy/config/job_conf.xml.j2 Log Message: ----------- Move Bridges Pulsar from /pylon2 to /home

1 0

[galaxyproject/usegalaxy-playbook] 2fae8f: Bug fix for Galaxy update ref feature recently add...
by GitHub 01 Mar '18

01 Mar '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 2fae8f3ab058bba8f353967f3e758455489f4cb0 https://github.com/galaxyproject/usegalaxy-playbook/commit/2fae8f3ab058bba8… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: A roles/usegalaxy_cvmfs/files/makepyc.py A roles/usegalaxy_cvmfs/files/update_galaxy.sh M roles/usegalaxy_cvmfs/tasks/update.yml Log Message: ----------- Bug fix for Galaxy update ref feature recently added, plus move the update and makepyc scripts in to Ansible so they are version controlled and I don't have to make manual transactions to change them. Commit: bebea945a4f64a582de4ceacc2a3077f038aa6d4 https://github.com/galaxyproject/usegalaxy-playbook/commit/bebea945a4f64a58… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M env/test/files/galaxy/galaxy_version.yml Log Message: ----------- Update Test Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/038df8395fb5...…

1 0

[galaxyproject/galaxy] 3dec3b: Move `Extract genomic DNA 1` to list of version ga...
by GitHub 01 Mar '18

01 Mar '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 3dec3bdd21176d0fb66d7606a1e513ef244e4e86 https://github.com/galaxyproject/galaxy/commit/3dec3bdd21176d0fb66d7606a1e5… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Move `Extract genomic DNA 1` to list of version galaxy lib tools Commit: 2d132a45d9af112a9d96e6a1d58646aff1a72910 https://github.com/galaxyproject/galaxy/commit/2d132a45d9af112a9d96e6a1d586… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Merge pull request #5626 from mvdbeek/limit_extract_dna_legacy_versions [17.09] Move `Extract genomic DNA 1` to list of versioned galaxy tools requiring galaxy to be importable Commit: 87c70d844747b6d99880e495be0102fe386ccdb0 https://github.com/galaxyproject/galaxy/commit/87c70d844747b6d99880e495be01… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Merge branch 'release_17.09' into release_18.01 Conflicts: lib/galaxy/tools/__init__.py Commit: e53e90895d2e195322af65364b0fb55049ea728b https://github.com/galaxyproject/galaxy/commit/e53e90895d2e195322af65364b0f… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Merge branch 'release_18.01' into dev Compare: https://github.com/galaxyproject/galaxy/compare/740c78c734f1...e53e90895d2e

1 0

[galaxyproject/galaxy] 3dec3b: Move `Extract genomic DNA 1` to list of version ga...
by GitHub 01 Mar '18

01 Mar '18

Branch: refs/heads/release_18.01 Home: https://github.com/galaxyproject/galaxy Commit: 3dec3bdd21176d0fb66d7606a1e513ef244e4e86 https://github.com/galaxyproject/galaxy/commit/3dec3bdd21176d0fb66d7606a1e5… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Move `Extract genomic DNA 1` to list of version galaxy lib tools Commit: 2d132a45d9af112a9d96e6a1d58646aff1a72910 https://github.com/galaxyproject/galaxy/commit/2d132a45d9af112a9d96e6a1d586… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Merge pull request #5626 from mvdbeek/limit_extract_dna_legacy_versions [17.09] Move `Extract genomic DNA 1` to list of versioned galaxy tools requiring galaxy to be importable Commit: 87c70d844747b6d99880e495be0102fe386ccdb0 https://github.com/galaxyproject/galaxy/commit/87c70d844747b6d99880e495be01… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-03-01 (Thu, 01 Mar 2018) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Merge branch 'release_17.09' into release_18.01 Conflicts: lib/galaxy/tools/__init__.py Compare: https://github.com/galaxyproject/galaxy/compare/a90c3a1d3f2c...87c70d844747

1 0