- galaxy-commits - lists.galaxyproject.org

[galaxyproject/usegalaxy-playbook] 560c91: Main mutable config
by GitHub 22 Feb '18

22 Feb '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 560c9178467903dbe14f7643cceaf41c922f239d https://github.com/galaxyproject/usegalaxy-playbook/commit/560c9178467903db… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-02-22 (Thu, 22 Feb 2018) Changed paths: M env/main/files/galaxy/var/integrated_tool_panel.xml Log Message: ----------- Main mutable config Commit: abe7ecf5bc6c490883844dedcc43442aeefbe3fc https://github.com/galaxyproject/usegalaxy-playbook/commit/abe7ecf5bc6c4908… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-02-22 (Thu, 22 Feb 2018) Changed paths: M roles/usegalaxy_cvmfs/tasks/update.yml Log Message: ----------- Eliminate docker restart as it's no longer needed. Commit: 749403d897d4ed0cfa0ece17829208835edcb650 https://github.com/galaxyproject/usegalaxy-playbook/commit/749403d897d4ed0c… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-02-22 (Thu, 22 Feb 2018) Changed paths: M env/main/group_vars/ftpservers/vars.yml M env/test/group_vars/ftpservers/vars.yml Log Message: ----------- Increase FTP upload limit to 75 GB Commit: dd1a8a790db92e7773c6853e7bbda3fff9611f7b https://github.com/galaxyproject/usegalaxy-playbook/commit/dd1a8a790db92e77… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-02-22 (Thu, 22 Feb 2018) Changed paths: M env/test/host_vars/br005.bridges.psc.edu.yml M env/test/host_vars/jetstream-iu0.galaxyproject.org.yml M env/test/host_vars/jetstream-tacc0.galaxyproject.org.yml M env/test/host_vars/login5.stampede.tacc.utexas.edu.yml Log Message: ----------- Increase Test Pulsar stream limits to 8 MB Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/8f88cb0342a4...…

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[galaxyproject/usegalaxy-playbook] 8f88cb: Main: Disable BioMart, enable @nuwang's GenomeSpac...
by GitHub 22 Feb '18

22 Feb '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 8f88cb0342a4c5ceace6511ada0732657ee5b82d https://github.com/galaxyproject/usegalaxy-playbook/commit/8f88cb0342a4c5ce… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-02-22 (Thu, 22 Feb 2018) Changed paths: M env/main/files/galaxy/config/tool_conf.xml Log Message: ----------- Main: Disable BioMart, enable @nuwang's GenomeSpace updates, add new collection operations

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[galaxyproject/galaxy] 1656c7: Fix repeated fetching dataset permissions in dynam...
by GitHub 22 Feb '18

22 Feb '18

Branch: refs/heads/release_18.01 Home: https://github.com/galaxyproject/galaxy Commit: 1656c7b429854323efda82accc4c190a965be8a3 https://github.com/galaxyproject/galaxy/commit/1656c7b429854323efda82accc4c… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M lib/galaxy/tools/parameters/output_collect.py Log Message: ----------- Fix repeated fetching dataset permissions in dynamic output collection. Commit: ce3b40cfc10e134d5acc477757404eba40ea6553 https://github.com/galaxyproject/galaxy/commit/ce3b40cfc10e134d5acc47775740… Author: Marius van den Beek <m.vandenbeek(a)gmail.com> Date: 2018-02-22 (Thu, 22 Feb 2018) Changed paths: M lib/galaxy/tools/parameters/output_collect.py Log Message: ----------- Merge pull request #5578 from jmchilton/opt_dyn_collect [18.01] Fix repeated fetching dataset permissions in dynamic output collection. Compare: https://github.com/galaxyproject/galaxy/compare/d9372739376f...ce3b40cfc10e

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[galaxyproject/usegalaxy-playbook] 743d47: Installed circos, BLAST+, and PoreTools.
by GitHub 22 Feb '18

22 Feb '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 743d47222b6b27269dc76bf6702532906a273d3c https://github.com/galaxyproject/usegalaxy-playbook/commit/743d47222b6b2726… Author: Dave B <dave(a)bx.psu.edu> Date: 2018-02-22 (Thu, 22 Feb 2018) Changed paths: M env/main/files/galaxy/var/integrated_tool_panel.xml M env/main/files/galaxy/var/shed_tool_conf.xml M env/main/files/galaxy/var/shed_tool_data_table_conf.xml Log Message: ----------- Installed circos, BLAST+, and PoreTools.

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[galaxyproject/galaxy] 1a782e: Paginate published workflow grid.
by GitHub 22 Feb '18

22 Feb '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 1a782eb4eb29158a203df9e02b0195ecfe496e37 https://github.com/galaxyproject/galaxy/commit/1a782eb4eb29158a203df9e02b01… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M lib/galaxy/webapps/galaxy/controllers/workflow.py Log Message: ----------- Paginate published workflow grid. @martenson mentioned he prefers the look and feel of the published history grid so this replicates that and very likely will result in quicker rendering on usegalaxy.org - though we should verify this after it is deployed since the paginated grid do result in two big join queries instead of one big query - but I suspect rendering details on fewer objects (which includes fetching tag information from the db) will saved more than enough to make up for that. Commit: ff73cf2e6f8e1143e82681a9cfa97d769610f2c2 https://github.com/galaxyproject/galaxy/commit/ff73cf2e6f8e1143e82681a9cfa9… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Handle header-only bam files correctly indicating there is no more data to fetch when chunking Commit: 34c5a1a1f39e4805b4b6e46d86e9db721c98199a https://github.com/galaxyproject/galaxy/commit/34c5a1a1f39e4805b4b6e46d86e9… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Two minor linting issues (deprecated e.message, unused var) Commit: 75b06187053de95f07fdbbb6caeaf3e52265238e https://github.com/galaxyproject/galaxy/commit/75b06187053de95f07fdbbb6caea… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M tools/data_source/upload.py Log Message: ----------- Do not remove external path files during library uploads xref. https://github.com/galaxyproject/galaxy/pull/5264#issuecomment-367172820 Commit: f7f9c120eda7f9d735257eecaeb759ad50473f57 https://github.com/galaxyproject/galaxy/commit/f7f9c120eda7f9d735257eecaeb7… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M test/integration/test_upload_configuration_options.py Log Message: ----------- Refactor BaseFtpUploadConfigurationTestCase._write_ftp_file() method Commit: f41230034689448abc6059d8e2771001961bafb9 https://github.com/galaxyproject/galaxy/commit/f41230034689448abc6059d8e277… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- No need to str() it; %s does this -- thanks @nsoranzo Commit: 117b4dcd6c503c51fb376c98ae8ba38d462d0301 https://github.com/galaxyproject/galaxy/commit/117b4dcd6c503c51fb376c98ae8b… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M test/base/populators.py M test/integration/test_upload_configuration_options.py Log Message: ----------- Update integration test to check external path files are not deleted after library upload This test would have failed before commit 75b06187053de95f07fdbbb6caeaf3e52265238e. Commit: 8afeffe95cc63832a6208e119cbfea4671a49a47 https://github.com/galaxyproject/galaxy/commit/8afeffe95cc63832a6208e119cbf… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Merge pull request #5579 from dannon/fix_bam_nodata [18.01] Fix small bam (header-only) infinite fetching Commit: 8cc675eedd8bb895cf26cfc1fa5cbcc97e75f638 https://github.com/galaxyproject/galaxy/commit/8cc675eedd8bb895cf26cfc1fa5c… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M lib/galaxy/webapps/galaxy/controllers/workflow.py Log Message: ----------- Merge pull request #5576 from jmchilton/workflow_paginate [18.01] Paginate published workflows grid. Commit: d9372739376f5d289740faae40e8790391d8d843 https://github.com/galaxyproject/galaxy/commit/d9372739376f5d289740faae40e8… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-02-22 (Thu, 22 Feb 2018) Changed paths: M test/base/populators.py M test/integration/test_upload_configuration_options.py M tools/data_source/upload.py Log Message: ----------- Merge pull request #5573 from nsoranzo/release_18.01_fix_filesystem_library_uploads [18.01] Do not remove external path files during library uploads Commit: f354b9d3f589e41020766968fe5827e99fd97c9d https://github.com/galaxyproject/galaxy/commit/f354b9d3f589e41020766968fe58… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-02-22 (Thu, 22 Feb 2018) Changed paths: M lib/galaxy/datatypes/binary.py M lib/galaxy/webapps/galaxy/controllers/workflow.py M test/base/populators.py M test/integration/test_upload_configuration_options.py M tools/data_source/upload.py Log Message: ----------- Merge branch 'release_18.01' into dev Compare: https://github.com/galaxyproject/galaxy/compare/6d94009cb359...f354b9d3f589

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[galaxyproject/galaxy] 75b061: Do not remove external path files during library u...
by GitHub 22 Feb '18

22 Feb '18

Branch: refs/heads/release_18.01 Home: https://github.com/galaxyproject/galaxy Commit: 75b06187053de95f07fdbbb6caeaf3e52265238e https://github.com/galaxyproject/galaxy/commit/75b06187053de95f07fdbbb6caea… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M tools/data_source/upload.py Log Message: ----------- Do not remove external path files during library uploads xref. https://github.com/galaxyproject/galaxy/pull/5264#issuecomment-367172820 Commit: f7f9c120eda7f9d735257eecaeb759ad50473f57 https://github.com/galaxyproject/galaxy/commit/f7f9c120eda7f9d735257eecaeb7… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M test/integration/test_upload_configuration_options.py Log Message: ----------- Refactor BaseFtpUploadConfigurationTestCase._write_ftp_file() method Commit: 117b4dcd6c503c51fb376c98ae8ba38d462d0301 https://github.com/galaxyproject/galaxy/commit/117b4dcd6c503c51fb376c98ae8b… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M test/base/populators.py M test/integration/test_upload_configuration_options.py Log Message: ----------- Update integration test to check external path files are not deleted after library upload This test would have failed before commit 75b06187053de95f07fdbbb6caeaf3e52265238e. Commit: d9372739376f5d289740faae40e8790391d8d843 https://github.com/galaxyproject/galaxy/commit/d9372739376f5d289740faae40e8… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-02-22 (Thu, 22 Feb 2018) Changed paths: M test/base/populators.py M test/integration/test_upload_configuration_options.py M tools/data_source/upload.py Log Message: ----------- Merge pull request #5573 from nsoranzo/release_18.01_fix_filesystem_library_uploads [18.01] Do not remove external path files during library uploads Compare: https://github.com/galaxyproject/galaxy/compare/8cc675eedd8b...d9372739376f

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[galaxyproject/galaxy] 1a782e: Paginate published workflow grid.
by GitHub 22 Feb '18

22 Feb '18

Branch: refs/heads/release_18.01 Home: https://github.com/galaxyproject/galaxy Commit: 1a782eb4eb29158a203df9e02b0195ecfe496e37 https://github.com/galaxyproject/galaxy/commit/1a782eb4eb29158a203df9e02b01… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M lib/galaxy/webapps/galaxy/controllers/workflow.py Log Message: ----------- Paginate published workflow grid. @martenson mentioned he prefers the look and feel of the published history grid so this replicates that and very likely will result in quicker rendering on usegalaxy.org - though we should verify this after it is deployed since the paginated grid do result in two big join queries instead of one big query - but I suspect rendering details on fewer objects (which includes fetching tag information from the db) will saved more than enough to make up for that. Commit: 8cc675eedd8bb895cf26cfc1fa5cbcc97e75f638 https://github.com/galaxyproject/galaxy/commit/8cc675eedd8bb895cf26cfc1fa5c… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M lib/galaxy/webapps/galaxy/controllers/workflow.py Log Message: ----------- Merge pull request #5576 from jmchilton/workflow_paginate [18.01] Paginate published workflows grid. Compare: https://github.com/galaxyproject/galaxy/compare/8afeffe95cc6...8cc675eedd8b

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[galaxyproject/galaxy] ff73cf: Handle header-only bam files correctly indicating ...
by GitHub 21 Feb '18

21 Feb '18

Branch: refs/heads/release_18.01 Home: https://github.com/galaxyproject/galaxy Commit: ff73cf2e6f8e1143e82681a9cfa97d769610f2c2 https://github.com/galaxyproject/galaxy/commit/ff73cf2e6f8e1143e82681a9cfa9… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Handle header-only bam files correctly indicating there is no more data to fetch when chunking Commit: 34c5a1a1f39e4805b4b6e46d86e9db721c98199a https://github.com/galaxyproject/galaxy/commit/34c5a1a1f39e4805b4b6e46d86e9… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Two minor linting issues (deprecated e.message, unused var) Commit: f41230034689448abc6059d8e2771001961bafb9 https://github.com/galaxyproject/galaxy/commit/f41230034689448abc6059d8e277… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- No need to str() it; %s does this -- thanks @nsoranzo Commit: 8afeffe95cc63832a6208e119cbfea4671a49a47 https://github.com/galaxyproject/galaxy/commit/8afeffe95cc63832a6208e119cbf… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Merge pull request #5579 from dannon/fix_bam_nodata [18.01] Fix small bam (header-only) infinite fetching Compare: https://github.com/galaxyproject/galaxy/compare/b5b41d6172bd...8afeffe95cc6

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[galaxyproject/galaxy] 27338c: Log errors from external chown script.
by GitHub 21 Feb '18

21 Feb '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 27338c246ada20da4580bf729b0ff169e743b2f0 https://github.com/galaxyproject/galaxy/commit/27338c246ada20da4580bf729b0f… Author: Petraea <Petraea(a)users.noreply.github.com> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M lib/galaxy/jobs/__init__.py Log Message: ----------- Log errors from external chown script. Commit: 5146cae1de24cda0027968bc1dfedad720fcaa0a https://github.com/galaxyproject/galaxy/commit/5146cae1de24cda0027968bc1dfe… Author: Petraea <Petraea(a)users.noreply.github.com> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M lib/galaxy/jobs/__init__.py Log Message: ----------- Use correct log instance And adjust spacing. Commit: 6d94009cb359ef58acd987a0fbdf3f9d024c7c17 https://github.com/galaxyproject/galaxy/commit/6d94009cb359ef58acd987a0fbdf… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M lib/galaxy/jobs/__init__.py Log Message: ----------- Merge pull request #5581 from Petraea/release_17.09 Log errors from external chown script. Compare: https://github.com/galaxyproject/galaxy/compare/eddc81cc9830...6d94009cb359

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[galaxyproject/galaxy] 31e31e: added fasta.gz
by GitHub 21 Feb '18

21 Feb '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 31e31e692311ba2e9f11d3eabe5253628f8e39c9 https://github.com/galaxyproject/galaxy/commit/31e31e692311ba2e9f11d3eabe52… Author: nekrut <anton(a)nekrut.org> Date: 2018-02-19 (Mon, 19 Feb 2018) Changed paths: M config/datatypes_conf.xml.sample A lib/galaxy/datatypes/converters/fastagz_to_fasta.xml M lib/galaxy/datatypes/sequence.py M lib/galaxy/datatypes/sniff.py Log Message: ----------- added fasta.gz Commit: d79717b86e0b6ecf5e540eb939888066b88081de https://github.com/galaxyproject/galaxy/commit/d79717b86e0b6ecf5e540eb93988… Author: nekrut <anton(a)nekrut.org> Date: 2018-02-19 (Mon, 19 Feb 2018) Changed paths: M lib/galaxy/datatypes/sequence.py Log Message: ----------- fixed flake8 errors Commit: 8cec1fd592a354be9b055fbb8b7f3ce72df39990 https://github.com/galaxyproject/galaxy/commit/8cec1fd592a354be9b055fbb8b7f… Author: nekrut <anton(a)nekrut.org> Date: 2018-02-19 (Mon, 19 Feb 2018) Changed paths: M lib/galaxy/datatypes/sequence.py Log Message: ----------- removing stray whitespace Commit: d34524ff8adc694e41f0e582a57f705f2ed0dd7d https://github.com/galaxyproject/galaxy/commit/d34524ff8adc694e41f0e582a57f… Author: nekrut <anton(a)nekrut.org> Date: 2018-02-19 (Mon, 19 Feb 2018) Changed paths: M lib/galaxy/datatypes/converters/fastagz_to_fasta.xml Log Message: ----------- fixed name of fastagz->fasta converter Commit: c4ce9695bbb577a0e9514c5cb71069156d33a943 https://github.com/galaxyproject/galaxy/commit/c4ce9695bbb577a0e9514c5cb710… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-02-19 (Mon, 19 Feb 2018) Changed paths: M lib/galaxy/datatypes/converters/fastagz_to_fasta.xml Log Message: ----------- fix copypasta Commit: 9feaf85585a30820dd71762431e1ed7d5b5c3b5e https://github.com/galaxyproject/galaxy/commit/9feaf85585a30820dd71762431e1… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-02-19 (Mon, 19 Feb 2018) Changed paths: M lib/galaxy/datatypes/sequence.py Log Message: ----------- fix more fasta copypasta Commit: 17a5d20278f7306e69e77054f92d976020e048ee https://github.com/galaxyproject/galaxy/commit/17a5d20278f7306e69e77054f92d… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-02-19 (Mon, 19 Feb 2018) Changed paths: M run_tests.sh Log Message: ----------- In test framework only build client if running Selenium tests. These shouldn't be required for any other test types I believe and it slows things down. Commit: 2ca339d2b7cfdde817097837033e317a19b4a801 https://github.com/galaxyproject/galaxy/commit/2ca339d2b7cfdde817097837033e… Author: Jelle Scholtalbers <j.scholtalbers(a)gmail.com> Date: 2018-02-20 (Tue, 20 Feb 2018) Changed paths: M lib/galaxy/auth/__init__.py Log Message: ----------- fix broken admin 'create new user' when registration =='challenge' Commit: 01776c617b691c467e423c7a5f60c17be9b71503 https://github.com/galaxyproject/galaxy/commit/01776c617b691c467e423c7a5f60… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-02-20 (Tue, 20 Feb 2018) Changed paths: M lib/galaxy/auth/__init__.py Log Message: ----------- Merge pull request #5569 from scholtalbers/fix/broken_create_new_user_challenge [18.01] fix broken admin 'create new user' when registration =='challenge' Commit: 99f7de456ce953f36e6122270209083fe443654b https://github.com/galaxyproject/galaxy/commit/99f7de456ce953f36e6122270209… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-02-20 (Tue, 20 Feb 2018) Changed paths: M run_tests.sh Log Message: ----------- Merge pull request #5566 from jmchilton/optimize_tests_0 [18.01] In test framework only build client if running Selenium tests. Commit: 7715838dbbbcad980a47d1a96619b6e91fa7a623 https://github.com/galaxyproject/galaxy/commit/7715838dbbbcad980a47d1a96619… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-02-20 (Tue, 20 Feb 2018) Changed paths: M config/datatypes_conf.xml.sample A lib/galaxy/datatypes/converters/fastagz_to_fasta.xml M lib/galaxy/datatypes/sequence.py M lib/galaxy/datatypes/sniff.py Log Message: ----------- Merge pull request #5561 from martenson/backport-fastgz [18.01] add fasta.gz support Commit: af0b40ea95c5244c58fbaa545b81ef4c4eff7cf0 https://github.com/galaxyproject/galaxy/commit/af0b40ea95c5244c58fbaa545b81… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M lib/galaxy/web/proxy/js/package.json Log Message: ----------- Bump sqlite3 dependency for web proxy Commit: 5d422898582446575dfe30d13805c9e13a3f8104 https://github.com/galaxyproject/galaxy/commit/5d422898582446575dfe30d13805… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M lib/galaxy/web/proxy/js/package.json Log Message: ----------- Minor updates to commander, http-proxy. eventemitter3 is several major versions behind, needs testing before upgrade. Commit: b5b41d6172bd7e2894efcc3b423b11a37fb92823 https://github.com/galaxyproject/galaxy/commit/b5b41d6172bd7e2894efcc3b423b… Author: Björn Grüning <bjoern(a)gruenings.eu> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M lib/galaxy/web/proxy/js/package.json Log Message: ----------- Merge pull request #5575 from dannon/web_proxy_fixes [18.01] Bump sqlite3 dependency for web proxy Commit: eddc81cc98308dd9e2e07a783b20ba8b9985be33 https://github.com/galaxyproject/galaxy/commit/eddc81cc98308dd9e2e07a783b20… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2018-02-21 (Wed, 21 Feb 2018) Changed paths: M lib/galaxy/auth/__init__.py M lib/galaxy/web/proxy/js/package.json M run_tests.sh Log Message: ----------- Merge branch 'release_18.01' into dev Compare: https://github.com/galaxyproject/galaxy/compare/697e80186541...eddc81cc9830

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