- galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] 58a2cd: Refactor deactivate_or_uninstall_repository
by GitHub 05 Jul '17

05 Jul '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 58a2cde89fdc5e52c4b6b10842d47f1e1f24bfca https://github.com/galaxyproject/galaxy/commit/58a2cde89fdc5e52c4b6b10842d4… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-06-27 (Tue, 27 Jun 2017) Changed paths: M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py M lib/tool_shed/galaxy_install/installed_repository_manager.py Log Message: ----------- Refactor deactivate_or_uninstall_repository Move code that deals with repository uninstallation into InstalledRepositoryManager, so that this can be reused by the API. Commit: b29f23500d0b8ccb0ef94521cbb42aaae430c755 https://github.com/galaxyproject/galaxy/commit/b29f23500d0b8ccb0ef94521cbb4… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-06-27 (Tue, 27 Jun 2017) Changed paths: M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py Log Message: ----------- Simplify uninstall message creation Commit: 67c66861c50f02475e497aa0c4feec7dfa16c2c2 https://github.com/galaxyproject/galaxy/commit/67c66861c50f02475e497aa0c4fe… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-06-27 (Tue, 27 Jun 2017) Changed paths: M lib/galaxy/webapps/galaxy/api/tool_shed_repositories.py M lib/galaxy/webapps/galaxy/buildapp.py Log Message: ----------- Add `uninstall_repository` to ToolShedRepositoriesController And connect routes. It is now possible to POST to api/tool_shed_repositories to trigger a Repository installation and to DELETE to api/tool_shed_repositories to uninstall a repository. In addition one can also DELETE to api/tool_shed_repositories/<repository_id>, which will uninstall the repository with repository_id. Commit: 3492f0e18fe389496623d9a09b57c40fd113b7c8 https://github.com/galaxyproject/galaxy/commit/3492f0e18fe389496623d9a09b57… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-07-02 (Sun, 02 Jul 2017) Changed paths: M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py Log Message: ----------- Fix the uninstall/deactivate message that is send to the mako template Commit: 6a8f15bacb147e5189be983ad829a492d6dc0657 https://github.com/galaxyproject/galaxy/commit/6a8f15bacb147e5189be983ad829… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-07-04 (Tue, 04 Jul 2017) Changed paths: M lib/tool_shed/galaxy_install/installed_repository_manager.py A test/unit/shed_unit/test_installed_repository_manager.py M test/unit/shed_unit/test_tool_panel_manager.py M test/unit/tools/test_toolbox.py Log Message: ----------- Add basic unittest for InstalledRepositoryManager that exercises the most basic functionality, which is the deactivate and to uninstall repositories. Also moves shared `_init_dynamic_tool_conf` method to BaseToolBoxTestCase Commit: 79f3dc00a61d2f6425f16cfa018d973b31fb4973 https://github.com/galaxyproject/galaxy/commit/79f3dc00a61d2f6425f16cfa018d… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-07-05 (Wed, 05 Jul 2017) Changed paths: M lib/galaxy/webapps/galaxy/api/tool_shed_repositories.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py M lib/tool_shed/galaxy_install/installed_repository_manager.py A test/unit/shed_unit/test_installed_repository_manager.py M test/unit/shed_unit/test_tool_panel_manager.py M test/unit/tools/test_toolbox.py Log Message: ----------- Merge pull request #4248 from mvdbeek/uninstall_repository_api_endpoint Add API repository uninstall endpoint Compare: https://github.com/galaxyproject/galaxy/compare/86caee96e91a...79f3dc00a61d

1 0

[galaxyproject/galaxy] a4689b: Add test_errors to .gitignore.
by GitHub 05 Jul '17

05 Jul '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: a4689b6bf36beb1ff9533addb5201b5e368e2e97 https://github.com/galaxyproject/galaxy/commit/a4689b6bf36beb1ff9533addb520… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-07-05 (Wed, 05 Jul 2017) Changed paths: M .gitignore Log Message: ----------- Add test_errors to .gitignore. Used to store information about selenium failures. Commit: 86caee96e91adbda035cbbbc6628f1d2378c6c4d https://github.com/galaxyproject/galaxy/commit/86caee96e91adbda035cbbbc6628… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-07-05 (Wed, 05 Jul 2017) Changed paths: M .gitignore Log Message: ----------- Merge pull request #4278 from jmchilton/gitignore Add test_errors to .gitignore. Compare: https://github.com/galaxyproject/galaxy/compare/932b8f59ec2e...86caee96e91a

1 0

[galaxyproject/galaxy] bcdb8f: Spacing convention, -> util.asbool, atribute -> at...
by GitHub 05 Jul '17

05 Jul '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: bcdb8fcbe731c78332f6b44710359c834d13fa0b https://github.com/galaxyproject/galaxy/commit/bcdb8fcbe731c78332f6b4471035… Author: Brad Langhorst <langhorst(a)neb.com> Date: 2017-06-27 (Tue, 27 Jun 2017) Changed paths: M lib/galaxy/webapps/galaxy/api/lda_datasets.py Log Message: ----------- Spacing convention, -> util.asbool, atribute -> attribute Commit: 932b8f59ec2e334ba0f3839a9b1d1d6c6bb2e2b8 https://github.com/galaxyproject/galaxy/commit/932b8f59ec2e334ba0f3839a9b1d… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-07-05 (Wed, 05 Jul 2017) Changed paths: M lib/galaxy/webapps/galaxy/api/lda_datasets.py Log Message: ----------- Merge pull request #4250 from bwlang/spelling_style_fixes Spacing convention, -> util.asbool, atribute -> attribute Compare: https://github.com/galaxyproject/galaxy/compare/7ce50a8ff724...932b8f59ec2e

1 0

[galaxyproject/galaxy] 9af36b: change 'register or login' to just 'login' if 'all...
by GitHub 04 Jul '17

04 Jul '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 9af36bd13b90eea2f2883ab623a4a60ccf58a8b8 https://github.com/galaxyproject/galaxy/commit/9af36bd13b90eea2f2883ab623a4… Author: Jelle Scholtalbers <j.scholtalbers(a)gmail.com> Date: 2017-06-28 (Wed, 28 Jun 2017) Changed paths: M client/galaxy/scripts/layout/menu.js M static/maps/layout/menu.js.map M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/layout/menu.js Log Message: ----------- change 'register or login' to just 'login' if 'allow_user_creation=False' Commit: 010beb8270bddbddcbf4712c6466cd9831cd2ae3 https://github.com/galaxyproject/galaxy/commit/010beb8270bddbddcbf4712c6466… Author: Jelle Scholtalbers <j.scholtalbers(a)gmail.com> Date: 2017-07-04 (Tue, 04 Jul 2017) Changed paths: M client/galaxy/scripts/layout/menu.js M static/maps/layout/menu.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js Log Message: ----------- code optimization - reuse userTab variable Commit: 7ce50a8ff72424ffb3403f6026ba4ada9bc32ba3 https://github.com/galaxyproject/galaxy/commit/7ce50a8ff72424ffb3403f6026ba… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-07-04 (Tue, 04 Jul 2017) Changed paths: M CONTRIBUTING.md A SECURITY_POLICY.md M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/mvc/history/history-list.js M client/galaxy/scripts/mvc/history/options-menu.js M client/galaxy/scripts/mvc/tool/tool-form-base.js M config/datatypes_conf.xml.sample M doc/source/project/organization.rst M lib/galaxy/app.py M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/plant_tribes.py M lib/galaxy/datatypes/sequence.py M lib/galaxy/datatypes/sniff.py M lib/galaxy/datatypes/tabular.py A lib/galaxy/datatypes/test/1.ptkscmp M lib/galaxy/managers/collections.py M lib/galaxy/managers/tags.py M lib/galaxy/model/__init__.py M lib/galaxy/tools/__init__.py M lib/galaxy/tools/toolbox/base.py M lib/galaxy/web/base/controller.py M lib/galaxy/webapps/galaxy/api/jobs.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/galaxy/controllers/history.py M static/maps/mvc/history/history-list.js.map M static/maps/mvc/history/options-menu.js.map M static/maps/mvc/tool/tool-form-base.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/history/history-list.js M static/scripts/mvc/history/options-menu.js M static/scripts/mvc/tool/tool-form-base.js R templates/webapps/galaxy/history/shared_grid.mako M test/unit/unittest_utils/galaxy_mock.py Log Message: ----------- Merge remote-tracking branch 'upstream/dev' into login_only Compare: https://github.com/galaxyproject/galaxy/compare/ac59d1d6e042...7ce50a8ff724

1 0

[galaxyproject/galaxy] 66dabf: Add ptkscmp datatype for PlantTribes significant c...
by GitHub 04 Jul '17

04 Jul '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 66dabf65ab3d3e9e2d59fefb57526b931a5920fe https://github.com/galaxyproject/galaxy/commit/66dabf65ab3d3e9e2d59fefb5752… Author: Greg Von Kuster <ghv2(a)psu.edu> Date: 2017-06-28 (Wed, 28 Jun 2017) Changed paths: M config/datatypes_conf.xml.sample M lib/galaxy/datatypes/plant_tribes.py A lib/galaxy/datatypes/test/1.ptkscmp Log Message: ----------- Add ptkscmp datatype for PlantTribes significant components in the Ks distribution Commit: ac59d1d6e042dd3288e89de48c470751db75de48 https://github.com/galaxyproject/galaxy/commit/ac59d1d6e042dd3288e89de48c47… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-07-04 (Tue, 04 Jul 2017) Changed paths: M config/datatypes_conf.xml.sample M lib/galaxy/datatypes/plant_tribes.py A lib/galaxy/datatypes/test/1.ptkscmp Log Message: ----------- Merge pull request #4259 from gregvonkuster/ptkscmp Add ptkscmp datatype Compare: https://github.com/galaxyproject/galaxy/compare/666c4bcbb010...ac59d1d6e042

1 0

[galaxyproject/galaxy] f8c2c0: Add shared history grid to client
by GitHub 04 Jul '17

04 Jul '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: f8c2c0b0355b69f279c1e05fc0b3a5caba1bdb77 https://github.com/galaxyproject/galaxy/commit/f8c2c0b0355b69f279c1e05fc0b3… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-06-29 (Thu, 29 Jun 2017) Changed paths: M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/mvc/history/options-menu.js M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/galaxy/controllers/history.py M static/maps/mvc/history/options-menu.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/history/options-menu.js Log Message: ----------- Add shared history grid to client Commit: 5de92dfbf4637b65930c2d6782db5ca7b9735646 https://github.com/galaxyproject/galaxy/commit/5de92dfbf4637b65930c2d6782db… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-06-29 (Thu, 29 Jun 2017) Changed paths: M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/mvc/history/history-list.js M client/galaxy/scripts/mvc/history/options-menu.js M lib/galaxy/webapps/galaxy/controllers/history.py M static/maps/mvc/history/history-list.js.map M static/maps/mvc/history/options-menu.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/history/history-list.js M static/scripts/mvc/history/options-menu.js Log Message: ----------- Restore basic copy and unshare operations Commit: fb73b5dc14e680b9488d0c82b44091adee94df8e https://github.com/galaxyproject/galaxy/commit/fb73b5dc14e680b9488d0c82b440… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-06-29 (Thu, 29 Jun 2017) Changed paths: M lib/galaxy/webapps/galaxy/controllers/history.py Log Message: ----------- Align operation handling Commit: d694b6061326d8747f3fa282c5bdf8257261252e https://github.com/galaxyproject/galaxy/commit/d694b6061326d8747f3fa282c5bd… Author: guerler <aysam.guerler(a)gmail.com> Date: 2017-06-29 (Thu, 29 Jun 2017) Changed paths: R templates/webapps/galaxy/history/shared_grid.mako Log Message: ----------- Remove shared grids mako Commit: 666c4bcbb010c348d1ad4e940475ebc46f610a89 https://github.com/galaxyproject/galaxy/commit/666c4bcbb010c348d1ad4e940475… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-07-03 (Mon, 03 Jul 2017) Changed paths: M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/mvc/history/history-list.js M client/galaxy/scripts/mvc/history/options-menu.js M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/galaxy/controllers/history.py M static/maps/mvc/history/history-list.js.map M static/maps/mvc/history/options-menu.js.map M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/history/history-list.js M static/scripts/mvc/history/options-menu.js R templates/webapps/galaxy/history/shared_grid.mako Log Message: ----------- Merge remote-tracking branch 'guerler/fix_shared_history' into dev Compare: https://github.com/galaxyproject/galaxy/compare/bc8d6dd1da33...666c4bcbb010

1 0

[galaxyproject/galaxy] 36bdd9: Keep tool parameters when rerunning a job
by GitHub 04 Jul '17

04 Jul '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 36bdd99fbc2875425f0c0e9861f4238f968baecb https://github.com/galaxyproject/galaxy/commit/36bdd99fbc2875425f0c0e9861f4… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-06-30 (Fri, 30 Jun 2017) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-base.js M lib/galaxy/tools/__init__.py M lib/galaxy/tools/toolbox/base.py M lib/galaxy/webapps/galaxy/api/jobs.py M static/maps/mvc/tool/tool-form-base.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/tool/tool-form-base.js Log Message: ----------- Keep tool parameters when rerunning a job with a different tool version, as long as the parameter did not change. Addresses https://github.com/galaxyproject/galaxy/issues/1729 Commit: 65e3365948ae84da2f1ccaeed4030ec8fd7d7f79 https://github.com/galaxyproject/galaxy/commit/65e3365948ae84da2f1ccaeed403… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-07-02 (Sun, 02 Jul 2017) Changed paths: M lib/galaxy/tools/toolbox/base.py Log Message: ----------- Simplify if/elif (thx @nsoranzo) Commit: 4c68e29a81fb991e3eda7efa035d0b7856a62372 https://github.com/galaxyproject/galaxy/commit/4c68e29a81fb991e3eda7efa035d… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-07-02 (Sun, 02 Jul 2017) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-base.js Log Message: ----------- Use if/else if to determine the job_id Commit: b928236cfaf197629530277154995b1fbb75c066 https://github.com/galaxyproject/galaxy/commit/b928236cfaf19762953027715499… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-07-02 (Sun, 02 Jul 2017) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-base.js M static/maps/mvc/tool/tool-form-base.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/tool/tool-form-base.js Log Message: ----------- Fix indentation Commit: bc8d6dd1da3347a2eacdcdbed081d85f16b9880c https://github.com/galaxyproject/galaxy/commit/bc8d6dd1da3347a2eacdcdbed081… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-07-03 (Mon, 03 Jul 2017) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-base.js M lib/galaxy/tools/__init__.py M lib/galaxy/tools/toolbox/base.py M lib/galaxy/webapps/galaxy/api/jobs.py M static/maps/mvc/tool/tool-form-base.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/tool/tool-form-base.js Log Message: ----------- Merge pull request #4271 from mvdbeek/job_rerun_changed_parameters Keep tool parameters when rerunning a job Compare: https://github.com/galaxyproject/galaxy/compare/ee62fa7de89d...bc8d6dd1da33

1 0

[galaxyproject/galaxy] cbcee5: Use contextmanager when using compression_util.get...
by GitHub 03 Jul '17

03 Jul '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: cbcee585b5cde16ef356a0907d52a493fd1b9f53 https://github.com/galaxyproject/galaxy/commit/cbcee585b5cde16ef356a0907d52… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-06-30 (Fri, 30 Jun 2017) Changed paths: M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/sequence.py M lib/galaxy/datatypes/sniff.py M lib/galaxy/datatypes/tabular.py Log Message: ----------- Use contextmanager when using compression_util.get_fileobj() Commit: e379f44effa9a72e5da6d01db6e2ee6d7f56e949 https://github.com/galaxyproject/galaxy/commit/e379f44effa9a72e5da6d01db6e2… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-07-03 (Mon, 03 Jul 2017) Changed paths: M lib/galaxy/datatypes/tabular.py Log Message: ----------- Remove outer try/except in Eland sniffer Exceptions in a sniffer are already caught in galaxy.datatypes.sniff.guess_ext() and are equivalent to `return False`. Thanks @nsoranzo! Commit: 3d16aa62fa8e5dc2d47e92e0a8eaa1ece27fb7ee https://github.com/galaxyproject/galaxy/commit/3d16aa62fa8e5dc2d47e92e0a8ea… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-07-03 (Mon, 03 Jul 2017) Changed paths: M lib/galaxy/datatypes/tabular.py Log Message: ----------- Also remove the inner try/except Commit: ee62fa7de89da4b6ecec04a43e608820ab6aa65e https://github.com/galaxyproject/galaxy/commit/ee62fa7de89da4b6ecec04a43e60… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2017-07-03 (Mon, 03 Jul 2017) Changed paths: M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/sequence.py M lib/galaxy/datatypes/sniff.py M lib/galaxy/datatypes/tabular.py Log Message: ----------- Merge pull request #4270 from mvdbeek/context_manager_get_fileobj Use contextmanager when using compression_util.get_fileobj() Compare: https://github.com/galaxyproject/galaxy/compare/816912998115...ee62fa7de89d

1 0

[galaxyproject/infrastructure-playbook] 6c5f03: Add training site
by GitHub 29 Jun '17

29 Jun '17

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 6c5f035ab26faaa628d3c3950ba9878acd4a41de https://github.com/galaxyproject/infrastructure-playbook/commit/6c5f035ab26… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-06-29 (Thu, 29 Jun 2017) Changed paths: M galaxyenv/host_vars/chouffe.galaxyproject.org.yml A galaxyenv/templates/nginx/training.j2 Log Message: ----------- Add training site

1 0

[galaxyproject/galaxy] 7c86c5: refactors tag manager to use only what it needs…
by GitHub 28 Jun '17

28 Jun '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 7c86c5480bc03db4897e64da1abd4c41ea6056c3 https://github.com/galaxyproject/galaxy/commit/7c86c5480bc03db4897e64da1abd… Author: Brad Langhorst <langhorst(a)neb.com> Date: 2017-06-27 (Tue, 27 Jun 2017) Changed paths: M lib/galaxy/app.py M lib/galaxy/managers/collections.py M lib/galaxy/managers/tags.py M lib/galaxy/model/__init__.py M lib/galaxy/web/base/controller.py M lib/tool_shed/galaxy_install/install_manager.py M test/unit/unittest_utils/galaxy_mock.py Log Message: ----------- refactors tag manager to use only what it needs… an sql_alchemy session, not the full app. This makes it possible to use the tag manager from the model. Commit: 49ccf2f49c032ec7198db3b053ec53ce3b02a694 https://github.com/galaxyproject/galaxy/commit/49ccf2f49c032ec7198db3b053ec… Author: Brad Langhorst <langhorst(a)neb.com> Date: 2017-06-27 (Tue, 27 Jun 2017) Changed paths: M lib/galaxy/managers/tags.py Log Message: ----------- Should address too much indentation flake issue Commit: 8f416951bf9855497b2b0ea1a1d17f3b762c0518 https://github.com/galaxyproject/galaxy/commit/8f416951bf9855497b2b0ea1a1d1… Author: Brad Langhorst <langhorst(a)neb.com> Date: 2017-06-28 (Wed, 28 Jun 2017) Changed paths: M lib/tool_shed/galaxy_install/install_manager.py Log Message: ----------- TagManager in toolshed is not related To GalaxyTagManager Fixes toolshed failing test Commit: 816912998115158a631f1d6114438c42f1f6ee2e https://github.com/galaxyproject/galaxy/commit/816912998115158a631f1d611443… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-06-28 (Wed, 28 Jun 2017) Changed paths: M lib/galaxy/app.py M lib/galaxy/managers/collections.py M lib/galaxy/managers/tags.py M lib/galaxy/model/__init__.py M lib/galaxy/web/base/controller.py M test/unit/unittest_utils/galaxy_mock.py Log Message: ----------- Merge pull request #4253 from bwlang/refactor_tag_manager refactors tag manager to use only what it needs… Compare: https://github.com/galaxyproject/galaxy/compare/dd0336e7d218...816912998115

1 0