- galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] bc6935: Touchup .gitignore to not ignore new bundles.
by GitHub 19 May '17

19 May '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: bc69358b6118c8de138d183741bfefe689d39869 https://github.com/galaxyproject/galaxy/commit/bc69358b6118c8de138d183741bf… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-05-19 (Fri, 19 May 2017) Changed paths: M .gitignore Log Message: ----------- Touchup .gitignore to not ignore new bundles. Commit: 3f4d820b466dfb0469102156798a5775034b7478 https://github.com/galaxyproject/galaxy/commit/3f4d820b466dfb0469102156798a… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-05-19 (Fri, 19 May 2017) Changed paths: M .gitignore Log Message: ----------- Merge pull request #4091 from jmchilton/bundle_gitignore Touchup .gitignore to not ignore new bundles. Compare: https://github.com/galaxyproject/galaxy/compare/d4cd8156f33a...3f4d820b466d

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[galaxyproject/galaxy] 4b1ca3: Add missing JS bundle
by GitHub 19 May '17

19 May '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 4b1ca33c2c751eb03a2f3126e64a41931ec3d01d https://github.com/galaxyproject/galaxy/commit/4b1ca33c2c751eb03a2f3126e64a… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2017-05-19 (Fri, 19 May 2017) Changed paths: A static/scripts/bundled/admin.bundled.js A static/scripts/bundled/admin.bundled.js.map Log Message: ----------- Add missing JS bundle Commit: d4cd8156f33a50ce64bdbe4d479165d2f4555b66 https://github.com/galaxyproject/galaxy/commit/d4cd8156f33a50ce64bdbe4d4791… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-05-19 (Fri, 19 May 2017) Changed paths: A static/scripts/bundled/admin.bundled.js A static/scripts/bundled/admin.bundled.js.map Log Message: ----------- Merge pull request #4088 from nsoranzo/add_admin.bundled.js Add missing JS bundle Compare: https://github.com/galaxyproject/galaxy/compare/69219e222877...d4cd8156f33a

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[galaxyproject/galaxy] be7dea: Sanitize container names sending to Kubernetes.
by GitHub 19 May '17

19 May '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: be7dea47d556823abfab7a369b3ac466f6dea494 https://github.com/galaxyproject/galaxy/commit/be7dea47d556823abfab7a369b3a… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-05-05 (Fri, 05 May 2017) Changed paths: M lib/galaxy/jobs/runners/kubernetes.py Log Message: ----------- Sanitize container names sending to Kubernetes. Commit: 8c126a87579f89a3689cdcacf467ee01bbe6793a https://github.com/galaxyproject/galaxy/commit/8c126a87579f89a3689cdcacf467… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-05-16 (Tue, 16 May 2017) Changed paths: M CONTRIBUTORS.md Log Message: ----------- Update contributors, diff of 17.01->17.05. Commit: 3807b5d3037d569138366c44659d9ee955a5590f https://github.com/galaxyproject/galaxy/commit/3807b5d3037d569138366c44659d… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-05-16 (Tue, 16 May 2017) Changed paths: M CONTRIBUTORS.md Log Message: ----------- 16.10 -> 17.01 contributor diff. Commit: b88097ae395968d562c1847189fae0b129f6ce4b https://github.com/galaxyproject/galaxy/commit/b88097ae395968d562c1847189fa… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-05-16 (Tue, 16 May 2017) Changed paths: M CONTRIBUTORS.md Log Message: ----------- 16.07 -> 16.10 contributors update. Commit: 5b27ad4cb47b5b250db3cf0cf2624b09a05b40ed https://github.com/galaxyproject/galaxy/commit/5b27ad4cb47b5b250db3cf0cf262… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-05-16 (Tue, 16 May 2017) Changed paths: M CONTRIBUTORS.md Log Message: ----------- CONTRIBUTORS update 16.04 -> 16.07 Commit: 4125f79161e584aa98098016e6a540111c7b5e2a https://github.com/galaxyproject/galaxy/commit/4125f79161e584aa98098016e6a5… Author: Björn Grüning <bjoern(a)gruenings.eu> Date: 2017-05-17 (Wed, 17 May 2017) Changed paths: M lib/galaxy/jobs/runners/kubernetes.py Log Message: ----------- Merge pull request #4034 from jmchilton/k8_name_fixed [17.05] Sanitize container names sending to Kubernetes. Commit: 3d6dfa4f60741743507c259da6d5610ab6fa14ff https://github.com/galaxyproject/galaxy/commit/3d6dfa4f60741743507c259da6d5… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-05-19 (Fri, 19 May 2017) Changed paths: M CONTRIBUTORS.md Log Message: ----------- For people without a commit-signing email, just use the github username (for now -- they can of course change this via PR) Commit: b1e9552e1b13c36c8d9ec7343e2f4cd11817cbef https://github.com/galaxyproject/galaxy/commit/b1e9552e1b13c36c8d9ec7343e2f… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-05-19 (Fri, 19 May 2017) Changed paths: M CONTRIBUTORS.md Log Message: ----------- Merge pull request #4070 from dannon/contrib_update [17.05] CONTRIBUTORS update Commit: f1d4ceeb304783801b96a579900e3b0e5da4010d https://github.com/galaxyproject/galaxy/commit/f1d4ceeb304783801b96a579900e… Author: Hans-Rudolf Hotz <hrhotz(a)users.noreply.github.com> Date: 2017-05-19 (Fri, 19 May 2017) Changed paths: M CONTRIBUTORS.md Log Message: ----------- Update CONTRIBUTORS.md completing the email address Commit: 73bf5b4f7502e8e8f4d7701bd9ab77770968d396 https://github.com/galaxyproject/galaxy/commit/73bf5b4f7502e8e8f4d7701bd9ab… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-05-19 (Fri, 19 May 2017) Changed paths: M CONTRIBUTORS.md Log Message: ----------- Merge pull request #4086 from hrhotz/patch-1 Update CONTRIBUTORS.md Commit: 69219e2228772a0df47315fa98404c985a58d953 https://github.com/galaxyproject/galaxy/commit/69219e2228772a0df47315fa9840… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-05-19 (Fri, 19 May 2017) Changed paths: M CONTRIBUTORS.md M lib/galaxy/jobs/runners/kubernetes.py Log Message: ----------- Merge pull request #4087 from galaxyproject/release_17.05 merge release 17.05 Compare: https://github.com/galaxyproject/galaxy/compare/50bb430b1a80...69219e222877

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[galaxyproject/galaxy] f1d4ce: Update CONTRIBUTORS.md
by GitHub 19 May '17

19 May '17

Branch: refs/heads/release_17.05 Home: https://github.com/galaxyproject/galaxy Commit: f1d4ceeb304783801b96a579900e3b0e5da4010d https://github.com/galaxyproject/galaxy/commit/f1d4ceeb304783801b96a579900e… Author: Hans-Rudolf Hotz <hrhotz(a)users.noreply.github.com> Date: 2017-05-19 (Fri, 19 May 2017) Changed paths: M CONTRIBUTORS.md Log Message: ----------- Update CONTRIBUTORS.md completing the email address Commit: 73bf5b4f7502e8e8f4d7701bd9ab77770968d396 https://github.com/galaxyproject/galaxy/commit/73bf5b4f7502e8e8f4d7701bd9ab… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-05-19 (Fri, 19 May 2017) Changed paths: M CONTRIBUTORS.md Log Message: ----------- Merge pull request #4086 from hrhotz/patch-1 Update CONTRIBUTORS.md Compare: https://github.com/galaxyproject/galaxy/compare/b1e9552e1b13...73bf5b4f7502

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[galaxyproject/galaxy] 8c126a: Update contributors, diff of 17.01->17.05.
by GitHub 19 May '17

19 May '17

Branch: refs/heads/release_17.05 Home: https://github.com/galaxyproject/galaxy Commit: 8c126a87579f89a3689cdcacf467ee01bbe6793a https://github.com/galaxyproject/galaxy/commit/8c126a87579f89a3689cdcacf467… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-05-16 (Tue, 16 May 2017) Changed paths: M CONTRIBUTORS.md Log Message: ----------- Update contributors, diff of 17.01->17.05. Commit: 3807b5d3037d569138366c44659d9ee955a5590f https://github.com/galaxyproject/galaxy/commit/3807b5d3037d569138366c44659d… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-05-16 (Tue, 16 May 2017) Changed paths: M CONTRIBUTORS.md Log Message: ----------- 16.10 -> 17.01 contributor diff. Commit: b88097ae395968d562c1847189fae0b129f6ce4b https://github.com/galaxyproject/galaxy/commit/b88097ae395968d562c1847189fa… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-05-16 (Tue, 16 May 2017) Changed paths: M CONTRIBUTORS.md Log Message: ----------- 16.07 -> 16.10 contributors update. Commit: 5b27ad4cb47b5b250db3cf0cf2624b09a05b40ed https://github.com/galaxyproject/galaxy/commit/5b27ad4cb47b5b250db3cf0cf262… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-05-16 (Tue, 16 May 2017) Changed paths: M CONTRIBUTORS.md Log Message: ----------- CONTRIBUTORS update 16.04 -> 16.07 Commit: 3d6dfa4f60741743507c259da6d5610ab6fa14ff https://github.com/galaxyproject/galaxy/commit/3d6dfa4f60741743507c259da6d5… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-05-19 (Fri, 19 May 2017) Changed paths: M CONTRIBUTORS.md Log Message: ----------- For people without a commit-signing email, just use the github username (for now -- they can of course change this via PR) Commit: b1e9552e1b13c36c8d9ec7343e2f4cd11817cbef https://github.com/galaxyproject/galaxy/commit/b1e9552e1b13c36c8d9ec7343e2f… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-05-19 (Fri, 19 May 2017) Changed paths: M CONTRIBUTORS.md Log Message: ----------- Merge pull request #4070 from dannon/contrib_update [17.05] CONTRIBUTORS update Compare: https://github.com/galaxyproject/galaxy/compare/4125f79161e5...b1e9552e1b13

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[galaxyproject/galaxy] 238e2a: remove the content alert from TS response
by GitHub 19 May '17

19 May '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 238e2a7e5f333daf83ffba4b0dfaf1a1c3737268 https://github.com/galaxyproject/galaxy/commit/238e2a7e5f333daf83ffba4b0dfa… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-05-18 (Thu, 18 May 2017) Changed paths: M lib/galaxy/webapps/tool_shed/api/repositories.py Log Message: ----------- remove the content alert from TS response Commit: 50bb430b1a80d201c58a6933f6d0194068b2e41e https://github.com/galaxyproject/galaxy/commit/50bb430b1a80d201c58a6933f6d0… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-05-19 (Fri, 19 May 2017) Changed paths: M lib/galaxy/webapps/tool_shed/api/repositories.py Log Message: ----------- Merge pull request #4082 from martenson/remove-alert-response remove the content alert from TS response Compare: https://github.com/galaxyproject/galaxy/compare/e826ded26415...50bb430b1a80

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[galaxyproject/infrastructure-playbook] bfb0cc: Set $HOME for Pulsar so that ~/.condarc can be wri...
by GitHub 18 May '17

18 May '17

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: bfb0cc017d25e0989e64b0d2e46741aa56289d89 https://github.com/galaxyproject/infrastructure-playbook/commit/bfb0cc017d2… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-05-18 (Thu, 18 May 2017) Changed paths: M jetstream_common/templates/supervisor/pulsar.j2 Log Message: ----------- Set $HOME for Pulsar so that ~/.condarc can be written

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[galaxyproject/galaxy] aa8576: Rebuild to provide new localization.
by GitHub 18 May '17

18 May '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: aa85760996fa6d6dd9b94a38cf7220d39b8770bc https://github.com/galaxyproject/galaxy/commit/aa85760996fa6d6dd9b94a38cf72… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-05-18 (Thu, 18 May 2017) Changed paths: M static/maps/nls/fr/locale.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/nls/fr/locale.js Log Message: ----------- Rebuild to provide new localization. Commit: e826ded26415ef29257acce776d02d272994a25c https://github.com/galaxyproject/galaxy/commit/e826ded26415ef29257acce776d0… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-05-18 (Thu, 18 May 2017) Changed paths: M static/maps/nls/fr/locale.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/nls/fr/locale.js Log Message: ----------- Merge pull request #4081 from dannon/locale_rebuild Rebuild to provide new localization. Compare: https://github.com/galaxyproject/galaxy/compare/e09aabe1d504...e826ded26415

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[galaxyproject/galaxy] dac779: Fix French translation errors
by GitHub 18 May '17

18 May '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: dac779858fcf3a5673fac4e1fb4ae12777e56c99 https://github.com/galaxyproject/galaxy/commit/dac779858fcf3a5673fac4e1fb4a… Author: Yvan Le Bras <yvan.le_bras(a)irisa.fr> Date: 2017-05-18 (Thu, 18 May 2017) Changed paths: M client/galaxy/scripts/nls/fr/locale.js Log Message: ----------- Fix French translation errors Commit: e09aabe1d504057bcd463bd385f932a93724e4fd https://github.com/galaxyproject/galaxy/commit/e09aabe1d504057bcd463bd385f9… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-05-18 (Thu, 18 May 2017) Changed paths: M client/galaxy/scripts/nls/fr/locale.js Log Message: ----------- Merge pull request #4080 from yvanlebras/patch-2 Fix French translation errors Compare: https://github.com/galaxyproject/galaxy/compare/7028ca04c755...e09aabe1d504

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[galaxyproject/galaxy] 2099c0: Add job runner for Chronos
by GitHub 18 May '17

18 May '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 2099c09f6ab5a8f5951d01cd6fa67681618e2dda https://github.com/galaxyproject/galaxy/commit/2099c09f6ab5a8f5951d01cd6fa6… Author: Thodoris Sotiropoulos <theosot(a)grnet.gr> Date: 2017-04-20 (Thu, 20 Apr 2017) Changed paths: M config/job_conf.xml.sample_advanced M lib/galaxy/dependencies/conditional-requirements.txt A lib/galaxy/jobs/runners/chronos.py Log Message: ----------- Add job runner for Chronos Chronos is a framework for the Apache Mesos; a software which manages computer clusters. Specifically, Chronos is a batch processing scheduler that runs on top of Mesos and it is used for job orchestration. Commit: 339c3724fb94d7d85732c7ef7f8f48e822f83c7d https://github.com/galaxyproject/galaxy/commit/339c3724fb94d7d85732c7ef7f8f… Author: Thodoris Sotiropoulos <theosot(a)dmst.aueb.gr> Date: 2017-04-26 (Wed, 26 Apr 2017) Changed paths: M lib/galaxy/dependencies/conditional-requirements.txt M lib/galaxy/dependencies/pinned-requirements.txt Log Message: ----------- Add chronos client to the pinned-requirements.txt Commit: 05ee848cd327ab293e20300d22dae94fc0e0473e https://github.com/galaxyproject/galaxy/commit/05ee848cd327ab293e20300d22da… Author: Thodoris Sotiropoulos <theosot(a)dmst.aueb.gr> Date: 2017-05-05 (Fri, 05 May 2017) Changed paths: M lib/galaxy/dependencies/pinned-requirements.txt Log Message: ----------- Pin version of chronos-python to 0.38 Commit: c01c9bbe616c9524883db148df38e770ea25547e https://github.com/galaxyproject/galaxy/commit/c01c9bbe616c9524883db148df38… Author: Thodoris Sotiropoulos <theosot(a)dmst.aueb.gr> Date: 2017-05-05 (Fri, 05 May 2017) Changed paths: M config/job_conf.xml.sample_advanced Log Message: ----------- Add an explanatory comment about job_conf of chronos Commit: 7028ca04c7554e87ca7ad63a547d962476810080 https://github.com/galaxyproject/galaxy/commit/7028ca04c7554e87ca7ad63a547d… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-05-18 (Thu, 18 May 2017) Changed paths: M config/job_conf.xml.sample_advanced M lib/galaxy/dependencies/pinned-requirements.txt A lib/galaxy/jobs/runners/chronos.py Log Message: ----------- Merge pull request #3946 from theosotr/feature-chronos Add job runner for Chronos Compare: https://github.com/galaxyproject/galaxy/compare/b9fb2de42b53...7028ca04c755

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