- galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] e2d6b6: Initial commit for transforming mako files for wor...
by GitHub 11 May '17

11 May '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: e2d6b6dc2c500027d4c4daf138d2ef5a9fee334f https://github.com/galaxyproject/galaxy/commit/e2d6b6dc2c500027d4c4daf138d2… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-04-09 (Sun, 09 Apr 2017) Changed paths: M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/layout/menu.js A client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M lib/galaxy/webapps/galaxy/controllers/workflow.py M static/maps/layout/menu.js.map A static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/layout/menu.js A static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css Log Message: ----------- Initial commit for transforming mako files for workflow into plain javascript Commit: b7af4a3cf4acb7489f4e181b29997374f90cfce2 https://github.com/galaxyproject/galaxy/commit/b7af4a3cf4acb7489f4e181b2999… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-04-20 (Thu, 20 Apr 2017) Changed paths: M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/mvc/workflow/workflow.js M static/maps/layout/menu.js.map M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/layout/menu.js M static/scripts/mvc/workflow/workflow.js Log Message: ----------- Create new workflow Commit: a421eb54bf9ad62f4891275d9e60292e4022e60e https://github.com/galaxyproject/galaxy/commit/a421eb54bf9ad62f4891275d9e60… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-04-20 (Thu, 20 Apr 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M lib/galaxy/webapps/galaxy/controllers/workflow.py M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css Log Message: ----------- Show workflow information using workflow select list Commit: 07cdbd209c7454232fb6936125448abb2f62e948 https://github.com/galaxyproject/galaxy/commit/07cdbd209c7454232fb693612544… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-04-25 (Tue, 25 Apr 2017) Changed paths: M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/galaxy/controllers/workflow.py M static/maps/layout/menu.js.map M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js M static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css Log Message: ----------- Fixing the routing issue and showing the main workflow dashboard in the center panel Commit: 14f3697bce50ae4e898ff15e1b7ee3b9938eecc9 https://github.com/galaxyproject/galaxy/commit/14f3697bce50ae4e898ff15e1b7e… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-04-25 (Tue, 25 Apr 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css Log Message: ----------- Adding actions dropdown for workflows Commit: 18f5b7d71c4c8718726394b57e8b478b54d1432d https://github.com/galaxyproject/galaxy/commit/18f5b7d71c4c8718726394b57e8b… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-04-25 (Tue, 25 Apr 2017) Changed paths: M lib/galaxy/webapps/galaxy/controllers/workflow.py Log Message: ----------- Redirecting to workflow list page once actions are over Commit: 26822859c13d19cc86185f68fe5145439d04af97 https://github.com/galaxyproject/galaxy/commit/26822859c13d19cc86185f68fe51… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-04-26 (Wed, 26 Apr 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css Log Message: ----------- Adding shared workflow and congifure workflow options Commit: 9b13a87cdbdbae0542b289b25ece8458c4584aad https://github.com/galaxyproject/galaxy/commit/9b13a87cdbdbae0542b289b25ece… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-04-26 (Wed, 26 Apr 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M lib/galaxy/webapps/galaxy/api/workflows.py M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css Log Message: ----------- Adding actions for shared workflows Commit: c72dc0c39a0d2333c1da24e44f71866e806f2fa6 https://github.com/galaxyproject/galaxy/commit/c72dc0c39a0d2333c1da24e44f71… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-04-27 (Thu, 27 Apr 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/controllers/workflow.py M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css Log Message: ----------- Changing html structure a bit Commit: 89a32b77b3b9d9766244c0991f5497407ae1b9d2 https://github.com/galaxyproject/galaxy/commit/89a32b77b3b9d9766244c0991f54… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-04-28 (Fri, 28 Apr 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css Log Message: ----------- Updating html and js structure and adding font awesome icons Commit: a625901664a1ccde9988aa758a3dd8fca387ab47 https://github.com/galaxyproject/galaxy/commit/a625901664a1ccde9988aa758a3d… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-04-28 (Fri, 28 Apr 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M lib/galaxy/webapps/galaxy/api/workflows.py M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css Log Message: ----------- Adding view action for shared workflow and fixing font-family for buttons Commit: 5630a5c7eb4e25e14a6e6173c1a46d7ce0babde6 https://github.com/galaxyproject/galaxy/commit/5630a5c7eb4e25e14a6e6173c1a4… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-04-28 (Fri, 28 Apr 2017) Changed paths: M .ci/flake8_docstrings_include_list.txt M .ci/flake8_lint_include_list.txt M .ci/py3_sources.txt M .travis.yml M CITATION M Makefile M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/galaxy.interactive_environments.js M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/mvc/citation/citation-view.js M client/galaxy/scripts/mvc/collection/collection-view-edit.js M client/galaxy/scripts/mvc/collection/collection-view.js M client/galaxy/scripts/mvc/dataset/dataset-li.js M client/galaxy/scripts/mvc/form/form-parameters.js M client/galaxy/scripts/mvc/history/hda-li.js M client/galaxy/scripts/mvc/history/hdca-li.js M client/galaxy/scripts/mvc/history/history-view-edit.js M client/galaxy/scripts/mvc/library/library-folderlist-view.js M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js M client/galaxy/scripts/mvc/library/library-librarylist-view.js M client/galaxy/scripts/mvc/library/library-librarytoolbar-view.js M client/galaxy/scripts/mvc/tag.js M client/galaxy/scripts/mvc/tool/tool-form-base.js M client/galaxy/scripts/mvc/tool/tool-form-composite.js M client/galaxy/scripts/mvc/ui/ui-color-picker.js M client/galaxy/scripts/mvc/ui/ui-misc.js M client/galaxy/scripts/mvc/ui/ui-options.js M client/galaxy/scripts/mvc/ui/ui-select-content.js M client/galaxy/scripts/mvc/ui/ui-table.js A client/galaxy/scripts/mvc/user/user-custom-builds.js M client/galaxy/scripts/mvc/user/user-preferences.js M client/galaxy/scripts/mvc/workflow/workflow-forms.js M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/scripts/nls/fr/locale.js M client/galaxy/scripts/nls/locale.js M client/galaxy/scripts/viz/phyloviz.js M client/galaxy/style/less/ui.less M client/package.json M client/webpack.config.js A config/containers_conf.yml.sample M config/datatypes_conf.xml.sample M 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static/scripts/mvc/library/library-librarylist-view.js M static/scripts/mvc/library/library-librarytoolbar-view.js M static/scripts/mvc/tag.js M static/scripts/mvc/tool/tool-form-base.js M static/scripts/mvc/tool/tool-form-composite.js M static/scripts/mvc/ui/ui-color-picker.js M static/scripts/mvc/ui/ui-misc.js M static/scripts/mvc/ui/ui-options.js M static/scripts/mvc/ui/ui-select-content.js M static/scripts/mvc/ui/ui-table.js A static/scripts/mvc/user/user-custom-builds.js M static/scripts/mvc/user/user-preferences.js M static/scripts/mvc/workflow/workflow-forms.js M static/scripts/nls/fr/locale.js M static/scripts/nls/locale.js M static/scripts/viz/phyloviz.js M static/style/blue/base.css M templates/admin/tool_shed_repository/select_tool_panel_section.mako M templates/show_params.mako R templates/user/dbkeys.mako M templates/user/index.mako M templates/webapps/galaxy/admin/center.mako M templates/webapps/galaxy/data_manager/index.mako M templates/webapps/galaxy/galaxy.masthead.mako M templates/webapps/galaxy/workflow/display.mako M templates/webapps/tool_shed/base_panels.mako A test-data/filter_labels_1.txt A test-data/new_labels_1.txt A test-data/new_labels_2.txt A test-data/new_labels_bad_1.txt A test-data/new_labels_bad_2.txt M test/api/test_libraries.py M test/api/test_tools.py M test/api/test_workflows.py A test/functional/tools/identifier_multiple_in_conditional.xml A test/functional/tools/identifier_multiple_in_repeat.xml M test/functional/tools/samples_tool_conf.xml M test/galaxy_selenium/navigates_galaxy.py M test/integration/test_workflow_handler_configuration.py A test/integration/workflow_handler_configuration_workflow_scheduler_conf.xml M test/qunit/tests/form_tests.js M test/qunit/tests/ui_tests.js M test/unit/tools/test_toolbox.py M test/unit/tools/test_wrappers.py M tool-data/shared/ucsc/builds.txt.sample M tool-data/shared/ucsc/ucsc_build_sites.txt.sample M tools/filters/trimmer.py M tools/filters/trimmer.xml M tox.ini Log Message: ----------- Merging with dev Commit: 35adfeaea613a2d0eb56145e0111036fbdbafb47 https://github.com/galaxyproject/galaxy/commit/35adfeaea613a2d0eb56145e0111… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-04-30 (Sun, 30 Apr 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M lib/galaxy/webapps/galaxy/api/workflows.py M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css Log Message: ----------- Adding table for showing all workflows Commit: 70ce1541a5282300ec8e926d0946a76b4da8af69 https://github.com/galaxyproject/galaxy/commit/70ce1541a5282300ec8e926d0946… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-05-01 (Mon, 01 May 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css Log Message: ----------- Adding client side search for workflows Commit: 490b11bfc5f4337315c16da8c3b5602d13986441 https://github.com/galaxyproject/galaxy/commit/490b11bfc5f4337315c16da8c3b5… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-05-01 (Mon, 01 May 2017) Changed paths: M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/mvc/workflow/workflow.js M lib/galaxy/webapps/galaxy/controllers/workflow.py M static/maps/layout/menu.js.map M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js M static/scripts/mvc/workflow/workflow.js Log Message: ----------- Converting run mako to plain javascript and modifying menu for url Commit: 0abf1a18c07cba79de2e0fb4f7efb80994b4986e https://github.com/galaxyproject/galaxy/commit/0abf1a18c07cba79de2e0fb4f7ef… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-05-05 (Fri, 05 May 2017) Changed paths: M .ci/flake8_wrapper_docstrings.sh M .ci/jenkins/selenium/run_tests.sh M Makefile M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/mvc/collection/collection-model.js M client/galaxy/scripts/mvc/dataset/dataset-model.js M client/galaxy/scripts/mvc/tag.js M client/galaxy/scripts/mvc/workflow/workflow-terminals.js M config/job_conf.xml.sample_advanced M config/plugins/interactive_environments/jupyter/config/allowed_images.yml.sample M config/plugins/interactive_environments/jupyter/config/jupyter.ini.sample M config/plugins/interactive_environments/jupyter/templates/jupyter.mako M config/plugins/interactive_environments/rstudio/config/rstudio.ini.sample M config/plugins/interactive_environments/rstudio/templates/rstudio.mako M lib/galaxy/app.py M lib/galaxy/auth/__init__.py M lib/galaxy/config.py M lib/galaxy/containers/__init__.py M lib/galaxy/containers/docker_swarm.py M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/dataproviders/hierarchy.py M lib/galaxy/datatypes/registry.py M lib/galaxy/datatypes/tabular.py M lib/galaxy/datatypes/text.py M lib/galaxy/dependencies/dev-requirements.txt M lib/galaxy/jobs/runners/kubernetes.py M lib/galaxy/queue_worker.py M lib/galaxy/tools/__init__.py M lib/galaxy/tools/data/__init__.py M lib/galaxy/tools/data_manager/manager.py M lib/galaxy/tools/execute.py M lib/galaxy/tools/parser/xml.py M lib/galaxy/tools/search/__init__.py M lib/galaxy/tools/toolbox/base.py M lib/galaxy/tools/toolbox/cache.py M lib/galaxy/tools/toolbox/lineages/tool_shed.py M lib/galaxy/tools/toolbox/parser.py M lib/galaxy/tools/xsd/galaxy.xsd M lib/galaxy/util/__init__.py M lib/galaxy/util/plugin_config.py M lib/galaxy/version.py M lib/galaxy/web/base/interactive_environments.py M lib/galaxy/web/framework/middleware/remoteuser.py M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py M lib/galaxy/webapps/galaxy/controllers/dataset.py M lib/tool_shed/galaxy_install/datatypes/custom_datatype_manager.py M lib/tool_shed/galaxy_install/install_manager.py M lib/tool_shed/galaxy_install/installed_repository_manager.py M lib/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py M lib/tool_shed/galaxy_install/tools/data_manager.py M lib/tool_shed/galaxy_install/tools/tool_panel_manager.py M lib/tool_shed/util/repository_util.py M lib/tool_shed/util/tool_dependency_util.py M lib/tool_shed/util/tool_util.py M run_tests.sh M scripts/bootstrap_history.py M setup.cfg M static/maps/mvc/collection/collection-model.js.map M static/maps/mvc/dataset/dataset-model.js.map M static/maps/mvc/tag.js.map M static/maps/mvc/workflow/workflow-terminals.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/collection/collection-model.js M static/scripts/mvc/dataset/dataset-model.js M static/scripts/mvc/tag.js M static/scripts/mvc/workflow/workflow-terminals.js M test/api/test_jobs.py M test/base/driver_util.py M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/framework.py M test/selenium_tests/test_workflow_run.py M test/unit/tools/test_toolbox.py M tools/data_source/upload.py M tox.ini Log Message: ----------- Merging with dev Commit: 63aeaa5e0300b0680633d7e78ab5f3859cb1a55c https://github.com/galaxyproject/galaxy/commit/63aeaa5e0300b0680633d7e78ab5… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-05-05 (Fri, 05 May 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js Log Message: ----------- Moving the action buttons text to their tooltips Commit: a99605d04a46797a2b55746096b050d0514a4c39 https://github.com/galaxyproject/galaxy/commit/a99605d04a46797a2b55746096b0… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-05-09 (Tue, 09 May 2017) Changed paths: M lib/galaxy/jobs/runners/condor.py M lib/galaxy/web/framework/middleware/graphite.py M test/api/test_workflows.py M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/test_history_sharing.py M test/selenium_tests/test_login.py M test/selenium_tests/test_registration.py M test/selenium_tests/test_tool_form.py Log Message: ----------- Merge branch 'dev' of https://github.com/bgruening/galaxy into workflowexport_mako Commit: 29ac63ac5675b0c514bbed392ac2ae1c804a8c58 https://github.com/galaxyproject/galaxy/commit/29ac63ac5675b0c514bbed392ac2… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-05-09 (Tue, 09 May 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M lib/galaxy/webapps/galaxy/controllers/workflow.py M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js R templates/webapps/galaxy/workflow/list.mako Log Message: ----------- Deleting list.mako file and updating code for workflow run Commit: c0decb71db316d6345af0cfcfa80b2902316bbf4 https://github.com/galaxyproject/galaxy/commit/c0decb71db316d6345af0cfcfa80… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-05-09 (Tue, 09 May 2017) Changed paths: M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/controllers/workflow.py Log Message: ----------- Fixing pylint comments for build failure Commit: 822abebd9e09457c544617c0eca583a8ff5f9821 https://github.com/galaxyproject/galaxy/commit/822abebd9e09457c544617c0eca5… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-05-09 (Tue, 09 May 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M lib/galaxy/webapps/galaxy/api/workflows.py M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js Log Message: ----------- Fixing PR review comments Commit: c825f45590739b2eca816106782238643fc4e3bd https://github.com/galaxyproject/galaxy/commit/c825f45590739b2eca8161067822… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-05-10 (Wed, 10 May 2017) Changed paths: M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map Log Message: ----------- Merging the static files Commit: d5d10f0ef0994906a434f48bbdf86437547ce526 https://github.com/galaxyproject/galaxy/commit/d5d10f0ef0994906a434f48bbdf8… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-05-10 (Wed, 10 May 2017) Changed paths: M client/galaxy/scripts/layout/menu.js A client/galaxy/scripts/nls/de/locale.js A client/galaxy/scripts/nls/es/locale.js M client/galaxy/scripts/nls/fr/locale.js M client/galaxy/scripts/nls/locale.js M static/maps/layout/menu.js.map A static/maps/nls/de/locale.js.map A static/maps/nls/es/locale.js.map M static/maps/nls/fr/locale.js.map M static/maps/nls/locale.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js A static/scripts/nls/de/locale.js A static/scripts/nls/es/locale.js M static/scripts/nls/fr/locale.js M static/scripts/nls/locale.js Log Message: ----------- Merging with dev and resolving conflicts Commit: e1d197b27e9a43c8b00a37160f7db54e44566d9c https://github.com/galaxyproject/galaxy/commit/e1d197b27e9a43c8b00a37160f7d… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-05-10 (Wed, 10 May 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M lib/galaxy/webapps/galaxy/api/workflows.py M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js Log Message: ----------- Fixing PR review comments Commit: b91729eaf637ff2741913f5ec3de1679fb65ee09 https://github.com/galaxyproject/galaxy/commit/b91729eaf637ff2741913f5ec3de… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-05-11 (Thu, 11 May 2017) Changed paths: M client/galaxy/scripts/apps/tool-panel.js M client/galaxy/scripts/mvc/workflow/workflow.js M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js Log Message: ----------- Fixing review comments for proxy_prefix and 'All workflows' link in the tool panel Commit: b6bf961cd7793c3efdbd3cb5252cda198d684d6d https://github.com/galaxyproject/galaxy/commit/b6bf961cd7793c3efdbd3cb5252c… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-05-11 (Thu, 11 May 2017) Changed paths: M lib/galaxy/webapps/galaxy/controllers/workflow.py Log Message: ----------- Fixing for prefix url for actions in workflow controller Commit: 004f843ba428c7b73f8ec035d1f930a5819b3069 https://github.com/galaxyproject/galaxy/commit/004f843ba428c7b73f8ec035d1f9… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-05-11 (Thu, 11 May 2017) Changed paths: M lib/galaxy/webapps/galaxy/controllers/workflow.py R templates/webapps/galaxy/workflow/list_for_run.mako Log Message: ----------- Removing list_for_run.mako and its corresponding method in workflow controller Commit: c76c588ed1c2e336f65b9b930a08cae7fb8f2957 https://github.com/galaxyproject/galaxy/commit/c76c588ed1c2e336f65b9b930a08… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-05-11 (Thu, 11 May 2017) Changed paths: M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/test_workflow_management.py Log Message: ----------- Fix Selenium test cases for JavaScript-izing workflow management. Commit: 7374558ca576f50b9225e97c058d983479df57f2 https://github.com/galaxyproject/galaxy/commit/7374558ca576f50b9225e97c058d… Author: Björn Grüning <bjoern(a)gruenings.eu> Date: 2017-05-11 (Thu, 11 May 2017) Changed paths: M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/test_workflow_management.py Log Message: ----------- Merge pull request #34 from jmchilton/workflowexport_mako_test_fixes Fix Selenium test cases for JavaScript-izing workflow management. Commit: 2e34b6c3e38e84f507297d45bcbb9a50e3748755 https://github.com/galaxyproject/galaxy/commit/2e34b6c3e38e84f507297d45bcbb… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-05-11 (Thu, 11 May 2017) Changed paths: M client/galaxy/scripts/apps/analysis.js M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Fix require inclusion scoping in analysis.js Commit: 6f89baba42ba629ad29b144706fb8475197c3b8b https://github.com/galaxyproject/galaxy/commit/6f89baba42ba629ad29b144706fb… Author: Björn Grüning <bjoern(a)gruenings.eu> Date: 2017-05-11 (Thu, 11 May 2017) Changed paths: M client/galaxy/scripts/apps/analysis.js M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Merge pull request #35 from dannon/workflowexport_mako Fix require inclusion scoping in analysis.js Commit: a72035b4972f20637290a0cf94088e0199accd6b https://github.com/galaxyproject/galaxy/commit/a72035b4972f20637290a0cf9408… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-05-11 (Thu, 11 May 2017) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow.js M static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/workflow/workflow.js Log Message: ----------- Removing unused imports in workflow main view Commit: e74653feace21206686905413943c86cae68eb8a https://github.com/galaxyproject/galaxy/commit/e74653feace21206686905413943… Author: anuprulez <anup.rulez(a)gmail.com> Date: 2017-05-11 (Thu, 11 May 2017) Changed paths: M client/galaxy/scripts/nls/fr/locale.js M static/maps/nls/fr/locale.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/nls/fr/locale.js M test/selenium_tests/framework.py Log Message: ----------- Merging with dev Commit: 2f6d9590feecf3a58e5d47f4eccbfa4f3aa209c7 https://github.com/galaxyproject/galaxy/commit/2f6d9590feecf3a58e5d47f4eccb… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-05-11 (Thu, 11 May 2017) Changed paths: M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/apps/tool-panel.js M client/galaxy/scripts/layout/menu.js A client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/style/less/base.less M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/galaxy/controllers/workflow.py M static/maps/layout/menu.js.map A static/maps/mvc/workflow/workflow.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js A static/scripts/mvc/workflow/workflow.js M static/style/blue/base.css R templates/webapps/galaxy/workflow/list.mako R templates/webapps/galaxy/workflow/list_for_run.mako M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/test_workflow_management.py Log Message: ----------- Merge pull request #4047 from bgruening/workflowexport_mako New Workflow Management Screen UI using JavaScript Compare: https://github.com/galaxyproject/galaxy/compare/163de025a20a...2f6d9590feec

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[galaxyproject/galaxy] a8ddd7: Reset Selenium test connection between test retrie...
by GitHub 11 May '17

11 May '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: a8ddd73ab4d72c91d53a641d867240663eb85737 https://github.com/galaxyproject/galaxy/commit/a8ddd73ab4d72c91d53a641d8672… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-05-11 (Thu, 11 May 2017) Changed paths: M test/selenium_tests/framework.py Log Message: ----------- Reset Selenium test connection between test retries. Otherwise the state of one test can affect the next attempt. Commit: 163de025a20ac1187389c876bebc04a40064458a https://github.com/galaxyproject/galaxy/commit/163de025a20ac1187389c876bebc… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2017-05-11 (Thu, 11 May 2017) Changed paths: M test/selenium_tests/framework.py Log Message: ----------- Merge pull request #4053 from jmchilton/selenium_fixes_13 Reset Selenium test connection between test retries. Compare: https://github.com/galaxyproject/galaxy/compare/09e018d3e6be...163de025a20a

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[galaxyproject/galaxy] e1c388: French error
by GitHub 11 May '17

11 May '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: e1c3886651661c872ab01b20d104254205573aba https://github.com/galaxyproject/galaxy/commit/e1c3886651661c872ab01b20d104… Author: Yvan Le Bras <yvan.le_bras(a)irisa.fr> Date: 2017-05-10 (Wed, 10 May 2017) Changed paths: M client/galaxy/scripts/nls/fr/locale.js Log Message: ----------- French error Commit: 09e018d3e6be0d40b52ac520f40db4b1ef97e558 https://github.com/galaxyproject/galaxy/commit/09e018d3e6be0d40b52ac520f40d… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-05-11 (Thu, 11 May 2017) Changed paths: M static/maps/nls/fr/locale.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/nls/fr/locale.js Log Message: ----------- Merge #4051 and rebuild client Compare: https://github.com/galaxyproject/galaxy/compare/70cc3ebb0882...09e018d3e6be

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[galaxyproject/galaxy] ced568: Fix destructive tag rerender to be a simple replac...
by GitHub 11 May '17

11 May '17

Branch: refs/heads/release_17.05 Home: https://github.com/galaxyproject/galaxy Commit: ced568a9e5974d0a4944abce99a64f1b8eb6e6f6 https://github.com/galaxyproject/galaxy/commit/ced568a9e5974d0a4944abce99a6… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-05-10 (Wed, 10 May 2017) Changed paths: M client/galaxy/scripts/mvc/dataset/dataset-li.js M static/maps/mvc/dataset/dataset-li.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/dataset/dataset-li.js Log Message: ----------- Fix destructive tag rerender to be a simple replacement. Left the original template/render in place, we could refactor as this becomes more standardized. Commit: 650691c943c096ee15233c61e4459982b2c6928d https://github.com/galaxyproject/galaxy/commit/650691c943c096ee15233c61e445… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-05-11 (Thu, 11 May 2017) Changed paths: M client/galaxy/scripts/mvc/dataset/dataset-li.js M static/maps/mvc/dataset/dataset-li.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/dataset/dataset-li.js Log Message: ----------- Merge pull request #4052 from dannon/1705_fix_tag_drag [17.05] Fix destructive tag rerender to be a simpler, more precise html replacement. Compare: https://github.com/galaxyproject/galaxy/compare/9e6c15299291...650691c943c0

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[galaxyproject/usegalaxy-playbook] 00ff30: Remove message
by GitHub 10 May '17

10 May '17

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 00ff306a13bd25f59670a51a432a1b8711b3dfc4 https://github.com/galaxyproject/usegalaxy-playbook/commit/00ff306a13bd25f5… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-05-10 (Wed, 10 May 2017) Changed paths: M files/galaxy/usegalaxy.org/var/integrated_tool_panel.xml M production/group_vars/galaxyservers.yml Log Message: ----------- Remove message

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[galaxyproject/galaxy] f792da: Minor fixes for new locales, rebuild of client.
by GitHub 10 May '17

10 May '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: f792da1ce2ce6cab3f35541eab3feb3162b889ac https://github.com/galaxyproject/galaxy/commit/f792da1ce2ce6cab3f35541eab3f… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-05-10 (Wed, 10 May 2017) Changed paths: M client/galaxy/scripts/nls/de/locale.js M client/galaxy/scripts/nls/es/locale.js M static/maps/layout/menu.js.map A static/maps/nls/de/locale.js.map A static/maps/nls/es/locale.js.map M static/maps/nls/fr/locale.js.map M static/maps/nls/locale.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/layout/menu.js A static/scripts/nls/de/locale.js A static/scripts/nls/es/locale.js M static/scripts/nls/fr/locale.js M static/scripts/nls/locale.js Log Message: ----------- Minor fixes for new locales, rebuild of client. Commit: 3c36af078f31de6fb2541aa410dff2dbe6ab380f https://github.com/galaxyproject/galaxy/commit/3c36af078f31de6fb2541aa410df… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-05-10 (Wed, 10 May 2017) Changed paths: M client/galaxy/scripts/layout/menu.js M static/maps/layout/menu.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js Log Message: ----------- Some cleanup, rebuild. Commit: 70cc3ebb0882c55bf3cb2df03cb5392de92ac1b3 https://github.com/galaxyproject/galaxy/commit/70cc3ebb0882c55bf3cb2df03cb5… Author: Björn Grüning <bjoern(a)gruenings.eu> Date: 2017-05-10 (Wed, 10 May 2017) Changed paths: M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/nls/de/locale.js M client/galaxy/scripts/nls/es/locale.js M static/maps/layout/menu.js.map A static/maps/nls/de/locale.js.map A static/maps/nls/es/locale.js.map M static/maps/nls/fr/locale.js.map M static/maps/nls/locale.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/layout/menu.js A static/scripts/nls/de/locale.js A static/scripts/nls/es/locale.js M static/scripts/nls/fr/locale.js M static/scripts/nls/locale.js Log Message: ----------- Merge pull request #4050 from dannon/locale_fixes Minor fixes for new locales, rebuild of client. Compare: https://github.com/galaxyproject/galaxy/compare/5e6f739fc1ec...70cc3ebb0882

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[galaxyproject/galaxy] cdd988: Add tooltip to sentences to translate
by GitHub 09 May '17

09 May '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: cdd988a68ddb19ddac96c89c1fcf156cbaab6e61 https://github.com/galaxyproject/galaxy/commit/cdd988a68ddb19ddac96c89c1fcf… Author: ValentinChCloud <chavaldranis(a)gmail.com> Date: 2017-05-09 (Tue, 09 May 2017) Changed paths: M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/nls/locale.js Log Message: ----------- Add tooltip to sentences to translate Commit: 3f632aaa5f6376a05a8ee908ddec231f7fb81183 https://github.com/galaxyproject/galaxy/commit/3f632aaa5f6376a05a8ee908ddec… Author: ValentinChCloud <chavaldranis(a)gmail.com> Date: 2017-05-09 (Tue, 09 May 2017) Changed paths: M client/galaxy/scripts/nls/fr/locale.js Log Message: ----------- Fr translation tooltip section Commit: 355966504cc7e3fe1a30d29087ce1b5be79a044c https://github.com/galaxyproject/galaxy/commit/355966504cc7e3fe1a30d29087ce… Author: ValentinChCloud <chavaldranis(a)gmail.com> Date: 2017-05-09 (Tue, 09 May 2017) Changed paths: A client/galaxy/scripts/nls/de/locale.js A client/galaxy/scripts/nls/es/locale.js Log Message: ----------- Deutsch and Spanish translation Commit: 5e6f739fc1ec249ec8a6e7b54200383ba1cd47b8 https://github.com/galaxyproject/galaxy/commit/5e6f739fc1ec249ec8a6e7b54200… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-05-09 (Tue, 09 May 2017) Changed paths: M client/galaxy/scripts/layout/menu.js A client/galaxy/scripts/nls/de/locale.js A client/galaxy/scripts/nls/es/locale.js M client/galaxy/scripts/nls/fr/locale.js M client/galaxy/scripts/nls/locale.js Log Message: ----------- Merge pull request #4045 from ValentinChCloud/dev Tooltip translation . Add Deutsch,Spanish Compare: https://github.com/galaxyproject/galaxy/compare/8acea3445019...5e6f739fc1ec

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[galaxyproject/usegalaxy-playbook] 69ea53: Swarm scale
by GitHub 09 May '17

09 May '17

Branch: refs/heads/reorg Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 69ea530df07aec1e85d8c40e50479db9f43e1630 https://github.com/galaxyproject/usegalaxy-playbook/commit/69ea530df07aec1e… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-05-09 (Tue, 09 May 2017) Changed paths: M env/common/stack.yml R env/test/group_vars/galaxyswarmmanagers/vars.yml R env/test/group_vars/galaxyswarmmanagers/vault.yml A env/test/group_vars/galaxyswarmscaleservers/vars.yml A env/test/group_vars/galaxyswarmscaleservers/vault.yml M env/test/inventory A roles/usegalaxy_swarmscale/files/delete.yml A roles/usegalaxy_swarmscale/files/inc_spawn.yml A roles/usegalaxy_swarmscale/files/instance A roles/usegalaxy_swarmscale/files/inventory.head A roles/usegalaxy_swarmscale/files/inventory.spawn A roles/usegalaxy_swarmscale/files/spawn.yml A roles/usegalaxy_swarmscale/tasks/main.yml A roles/usegalaxy_swarmscale/templates/ssh_config.jetstream.j2 Log Message: ----------- Swarm scale

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[galaxyproject/usegalaxy-playbook] d982b0: Message for Main
by GitHub 09 May '17

09 May '17

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: d982b0e86e073930f362ef28f0660d69d5ccac22 https://github.com/galaxyproject/usegalaxy-playbook/commit/d982b0e86e073930… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-05-09 (Tue, 09 May 2017) Changed paths: M production/group_vars/galaxyservers.yml Log Message: ----------- Message for Main

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[galaxyproject/usegalaxy-playbook] 105127: 17.05 fixes for Jupyter on Main
by GitHub 09 May '17

09 May '17

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 10512706c236c3dcacbbd14c5ea96c4ed357c591 https://github.com/galaxyproject/usegalaxy-playbook/commit/10512706c236c3dc… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-05-09 (Tue, 09 May 2017) Changed paths: M production/group_vars/galaxywebservers.yml M templates/nginx/usegalaxy.j2 Log Message: ----------- 17.05 fixes for Jupyter on Main

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