- galaxy-commits - lists.galaxyproject.org

[galaxyproject/infrastructure-playbook] 1e8908: Exclude the '.cache' directory from Jenkins backup...
by GitHub 04 Aug '16

04 Aug '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 1e8908cfbb6e46c3361d7222be9451d4e9cbc841 https://github.com/galaxyproject/infrastructure-playbook/commit/1e8908cfbb6… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-08-04 (Thu, 04 Aug 2016) Changed paths: M galaxyenv/host_vars/leeroy.galaxyproject.org.yml Log Message: ----------- Exclude the '.cache' directory from Jenkins backups. Commit: 7b9d8254aa93aac7821dfd0fba84b6e3d4a1cc7e https://github.com/galaxyproject/infrastructure-playbook/commit/7b9d8254aa9… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-08-04 (Thu, 04 Aug 2016) Changed paths: A galaxyenv/host_vars/n4.galaxyproject.org.yml M galaxyenv/inventory M galaxyenv/secret_group_vars/all.yml M galaxyenv/secret_host_vars/leeroy.galaxyproject.org.yml A galaxyenv/secret_host_vars/n4.galaxyproject.org.yml Log Message: ----------- Set up n4 as a Jenkins build slave Compare: https://github.com/galaxyproject/infrastructure-playbook/compare/0ee33a1ca8…

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[galaxyproject/galaxy] e13095: Changed css in base.less to allow tool search inpu...
by GitHub 04 Aug '16

04 Aug '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: e13095d3d2dc802143da69b94bc87390a6ea9699 https://github.com/galaxyproject/galaxy/commit/e13095d3d2dc802143da69b94bc8… Author: galaxy <galaxy(a)galaxy.development> Date: 2016-08-04 (Thu, 04 Aug 2016) Changed paths: M client/galaxy/style/less/base.less M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/style/blue/base.css Log Message: ----------- Changed css in base.less to allow tool search input field to remain fixed when a long list is being scroll. Issue 2375. Commit: c28f7e6b4e08624f6d690cf7899a41812ed68534 https://github.com/galaxyproject/galaxy/commit/c28f7e6b4e08624f6d690cf7899a… Author: Scott Szakonyi <sszakony(a)nd.edu> Date: 2016-08-04 (Thu, 04 Aug 2016) Changed paths: M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Updating to latest from project Commit: bf54f08fc2bca68c5e158e5e88f8e70e9a84f83c https://github.com/galaxyproject/galaxy/commit/bf54f08fc2bca68c5e158e5e88f8… Author: Scott Szakonyi <sszakony(a)nd.edu> Date: 2016-08-04 (Thu, 04 Aug 2016) Changed paths: M client/galaxy/style/less/base.less M static/style/blue/base.css Log Message: ----------- Merge branch 'Gal2375' into dev Conflicts: static/scripts/bundled/analysis.bundled.js static/scripts/bundled/analysis.bundled.js.map static/scripts/bundled/libs.bundled.js.map static/style/blue/base.css Commit: ae5b844388ddd0ded9816814abc8c46398d50511 https://github.com/galaxyproject/galaxy/commit/ae5b844388ddd0ded9816814abc8… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-08-04 (Thu, 04 Aug 2016) Changed paths: M client/galaxy/style/less/base.less M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/style/blue/base.css Log Message: ----------- Merge remote-tracking branch 'sszakony/dev' into dev Commit: 08d20b26784aca80c54ef7be8a8422dbb9328d93 https://github.com/galaxyproject/galaxy/commit/08d20b26784aca80c54ef7be8a84… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-08-04 (Thu, 04 Aug 2016) Changed paths: M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Repack w/ merge, not sure how the bundled libs got out of sync here. Compare: https://github.com/galaxyproject/galaxy/compare/3206a5405562...08d20b26784a

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[galaxyproject/usegalaxy-playbook] c7c0a5: Update Main
by GitHub 04 Aug '16

04 Aug '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: c7c0a524a77862553496d2f53630df5ba1d53728 https://github.com/galaxyproject/usegalaxy-playbook/commit/c7c0a524a7786255… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-08-04 (Thu, 04 Aug 2016) Changed paths: M production/galaxy_version.yml Log Message: ----------- Update Main

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[galaxyproject/usegalaxy-playbook] d38689: Update Test
by GitHub 04 Aug '16

04 Aug '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: d386890b73f0f18385d63c736edaa552fc7735c6 https://github.com/galaxyproject/usegalaxy-playbook/commit/d386890b73f0f183… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-08-04 (Thu, 04 Aug 2016) Changed paths: M stage/galaxy_version.yml Log Message: ----------- Update Test

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[galaxyproject/galaxy] 62fdbd: Fix the sanitization of None values in utils. Thi...
by GitHub 04 Aug '16

04 Aug '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 62fdbd526ae34357d3fbb44cedc46635c4df7cbb https://github.com/galaxyproject/galaxy/commit/62fdbd526ae34357d3fbb44cedc4… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-07-29 (Fri, 29 Jul 2016) Changed paths: M lib/galaxy/util/__init__.py Log Message: ----------- Fix the sanitization of None values in utils. This had previously not happened because Params had only been sanitizing strings coming in as part of the request, but if you're passing off (potentially manipulated, as in adding None default params) to a secondary request for a response, this can happen. Commit: ed7c357668df5bbb3381fae94353465594c7e184 https://github.com/galaxyproject/galaxy/commit/ed7c357668df5bbb3381fae94353… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-07-29 (Fri, 29 Jul 2016) Changed paths: M lib/galaxy/util/__init__.py Log Message: ----------- Merge pull request #2693 from dannon/utils_fix_sanitization_of_none [16.07] Fix the sanitization of None values in utils. This had previously no… Commit: 7bf0cc72418308e54b6ec180a8913623004c8288 https://github.com/galaxyproject/galaxy/commit/7bf0cc72418308e54b6ec180a891… Author: Remi Marenco <remi.marenco(a)gmail.com> Date: 2016-08-02 (Tue, 02 Aug 2016) Changed paths: M lib/galaxy/datatypes/tracks.py Log Message: ----------- Remove the old HubAssembly class Commit: 3206199652330659aa9f1cebe75c6940787f85d4 https://github.com/galaxyproject/galaxy/commit/3206199652330659aa9f1cebe75c… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-08-03 (Wed, 03 Aug 2016) Changed paths: M lib/galaxy/datatypes/tracks.py Log Message: ----------- Merge pull request #2701 from remimarenco/release_16.07 [16.07] Fix: Remove the old HubAssembly class Commit: 48849b814aac6bb70a1651f063f0789da4022ce7 https://github.com/galaxyproject/galaxy/commit/48849b814aac6bb70a1651f063f0… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-08-03 (Wed, 03 Aug 2016) Changed paths: M lib/galaxy/jobs/runners/__init__.py M lib/galaxy/jobs/runners/pulsar.py Log Message: ----------- Fixup metadata collection on workdir outputs for Pulsar. https://github.com/galaxyproject/galaxy/pull/1688/commits/a2e31403753c407e7… which gave tool's clean working directories made the function get_workdir_outputs a big sloppy. Pulsar would send it the actual remote working directory for jobs and Galaxy would send it the job directory (expecting it to append 'working'). Commit: 82430c024378e15729e5d2b52e50ad49930e5dd2 https://github.com/galaxyproject/galaxy/commit/82430c024378e15729e5d2b52e50… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-08-03 (Wed, 03 Aug 2016) Changed paths: M lib/galaxy/jobs/runners/__init__.py M lib/galaxy/jobs/runners/pulsar.py Log Message: ----------- Merge pull request #2721 from jmchilton/working_pulsar_metadata [16.07] Fix metadata collection on workdir outputs for Pulsar. Commit: 2affd08647c723014182552b09bcb4402d30d9b3 https://github.com/galaxyproject/galaxy/commit/2affd08647c723014182552b09bc… Author: Greg Von Kuster <ghv2(a)psu.edu> Date: 2016-08-03 (Wed, 03 Aug 2016) Changed paths: M lib/galaxy/dataset_collections/subcollections.py Log Message: ----------- Fix for splitting dataset collections Commit: 8b0d88b30e62997ec9b33fec402379b8e2033e5c https://github.com/galaxyproject/galaxy/commit/8b0d88b30e62997ec9b33fec4023… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-08-03 (Wed, 03 Aug 2016) Changed paths: M lib/galaxy/dataset_collections/subcollections.py Log Message: ----------- Merge pull request #2723 from jmchilton/backport_2708 [16.07] Backport #2708 Commit: 3206a54055620cb524fb5265ab91c979d3a520b2 https://github.com/galaxyproject/galaxy/commit/3206a54055620cb524fb5265ab91… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-08-04 (Thu, 04 Aug 2016) Changed paths: M lib/galaxy/datatypes/tracks.py M lib/galaxy/jobs/runners/__init__.py M lib/galaxy/jobs/runners/pulsar.py M lib/galaxy/util/__init__.py Log Message: ----------- Merge branch 'release_16.07' into dev Compare: https://github.com/galaxyproject/galaxy/compare/7efa1e0e4dd0...3206a5405562

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[galaxyproject/galaxy] b16356: add a netcdf datatype for metabolomics spectre dat...
by GitHub 04 Aug '16

04 Aug '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: b16356e49096849eb4f14efb21fa903945d473df https://github.com/galaxyproject/galaxy/commit/b16356e49096849eb4f14efb21fa… Author: lecorguille <lecorguille(a)users.noreply.github.com> Date: 2016-08-03 (Wed, 03 Aug 2016) Changed paths: M config/datatypes_conf.xml.sample M lib/galaxy/datatypes/binary.py Log Message: ----------- add a netcdf datatype for metabolomics spectre data Commit: ad8483a7db24a9067a2f6fdac4db3d409a8410a9 https://github.com/galaxyproject/galaxy/commit/ad8483a7db24a9067a2f6fdac4db… Author: Gildas Le Corguillé <lecorguille(a)users.noreply.github.com> Date: 2016-08-03 (Wed, 03 Aug 2016) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Update binary.py Commit: 4e64c23f463c2a8f985010a02f86c19db55ff50d https://github.com/galaxyproject/galaxy/commit/4e64c23f463c2a8f985010a02f86… Author: Gildas Le Corguillé <lecorguille(a)users.noreply.github.com> Date: 2016-08-03 (Wed, 03 Aug 2016) Changed paths: M config/datatypes_conf.xml.sample Log Message: ----------- Update datatypes_conf.xml.sample Add the sniffer in the sniffers Commit: ecce2575148815f7965c5ee94864d9698a4826bb https://github.com/galaxyproject/galaxy/commit/ecce2575148815f7965c5ee94864… Author: Gildas Le Corguillé <lecorguille(a)users.noreply.github.com> Date: 2016-08-03 (Wed, 03 Aug 2016) Changed paths: M config/datatypes_conf.xml.sample Log Message: ----------- Update datatypes_conf.xml.sample Change sniffer order Commit: 37a0ec597e13748f4abdf38ff8b32731ee8234de https://github.com/galaxyproject/galaxy/commit/37a0ec597e13748f4abdf38ff8b3… Author: Gildas Le Corguillé <lecorguille(a)users.noreply.github.com> Date: 2016-08-04 (Thu, 04 Aug 2016) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Update binary.py As suggested by @bgruening Commit: 7efa1e0e4dd00759b764193104a8d37b019cc5b8 https://github.com/galaxyproject/galaxy/commit/7efa1e0e4dd00759b764193104a8… Author: Björn Grüning <bjoern(a)gruenings.eu> Date: 2016-08-04 (Thu, 04 Aug 2016) Changed paths: M config/datatypes_conf.xml.sample M lib/galaxy/datatypes/binary.py Log Message: ----------- Merge pull request #2706 from lecorguille/add_netcdf_datatype add a netcdf datatype for metabolomics spectre data Compare: https://github.com/galaxyproject/galaxy/compare/65f0a836e0ff...7efa1e0e4dd0

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[galaxyproject/galaxy] 2affd0: Fix for splitting dataset collections
by GitHub 04 Aug '16

04 Aug '16

Branch: refs/heads/release_16.07 Home: https://github.com/galaxyproject/galaxy Commit: 2affd08647c723014182552b09bcb4402d30d9b3 https://github.com/galaxyproject/galaxy/commit/2affd08647c723014182552b09bc… Author: Greg Von Kuster <ghv2(a)psu.edu> Date: 2016-08-03 (Wed, 03 Aug 2016) Changed paths: M lib/galaxy/dataset_collections/subcollections.py Log Message: ----------- Fix for splitting dataset collections Commit: 8b0d88b30e62997ec9b33fec402379b8e2033e5c https://github.com/galaxyproject/galaxy/commit/8b0d88b30e62997ec9b33fec4023… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-08-03 (Wed, 03 Aug 2016) Changed paths: M lib/galaxy/dataset_collections/subcollections.py Log Message: ----------- Merge pull request #2723 from jmchilton/backport_2708 [16.07] Backport #2708 Compare: https://github.com/galaxyproject/galaxy/compare/82430c024378...8b0d88b30e62

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[galaxyproject/galaxy] d0bdd5: Fix for splitting dataset collections
by GitHub 04 Aug '16

04 Aug '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: d0bdd532bbd10fca2bf257bf9a8d0802ac0a0db0 https://github.com/galaxyproject/galaxy/commit/d0bdd532bbd10fca2bf257bf9a8d… Author: Greg Von Kuster <ghv2(a)psu.edu> Date: 2016-08-03 (Wed, 03 Aug 2016) Changed paths: M lib/galaxy/dataset_collections/subcollections.py Log Message: ----------- Fix for splitting dataset collections Commit: 65f0a836e0ffcccc0d0bb445e33f06a899ad47b0 https://github.com/galaxyproject/galaxy/commit/65f0a836e0ffcccc0d0bb445e33f… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-08-03 (Wed, 03 Aug 2016) Changed paths: M lib/galaxy/dataset_collections/subcollections.py Log Message: ----------- Merge pull request #2708 from gregvonkuster/collections_fix Fix for splitting dataset collections Compare: https://github.com/galaxyproject/galaxy/compare/24573f7ffb8e...65f0a836e0ff

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[galaxyproject/galaxy] 48849b: Fixup metadata collection on workdir outputs for P...
by GitHub 03 Aug '16

03 Aug '16

Branch: refs/heads/release_16.07 Home: https://github.com/galaxyproject/galaxy Commit: 48849b814aac6bb70a1651f063f0789da4022ce7 https://github.com/galaxyproject/galaxy/commit/48849b814aac6bb70a1651f063f0… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-08-03 (Wed, 03 Aug 2016) Changed paths: M lib/galaxy/jobs/runners/__init__.py M lib/galaxy/jobs/runners/pulsar.py Log Message: ----------- Fixup metadata collection on workdir outputs for Pulsar. https://github.com/galaxyproject/galaxy/pull/1688/commits/a2e31403753c407e7… which gave tool's clean working directories made the function get_workdir_outputs a big sloppy. Pulsar would send it the actual remote working directory for jobs and Galaxy would send it the job directory (expecting it to append 'working'). Commit: 82430c024378e15729e5d2b52e50ad49930e5dd2 https://github.com/galaxyproject/galaxy/commit/82430c024378e15729e5d2b52e50… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-08-03 (Wed, 03 Aug 2016) Changed paths: M lib/galaxy/jobs/runners/__init__.py M lib/galaxy/jobs/runners/pulsar.py Log Message: ----------- Merge pull request #2721 from jmchilton/working_pulsar_metadata [16.07] Fix metadata collection on workdir outputs for Pulsar. Compare: https://github.com/galaxyproject/galaxy/compare/320619965233...82430c024378

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[galaxyproject/galaxy] 9f7592: Inject data module values in connected steps on in...
by GitHub 03 Aug '16

03 Aug '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 9f75926e4dfc8c4d644d191ba324a5f8a40e2e7d https://github.com/galaxyproject/galaxy/commit/9f75926e4dfc8c4d644d191ba324… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-composite.js M lib/galaxy/webapps/galaxy/controllers/workflow.py M lib/galaxy/workflow/modules.py M static/maps/mvc/tool/tool-form-composite.js.map M static/scripts/mvc/tool/tool-form-composite.js Log Message: ----------- Inject data module values in connected steps on initialization Commit: db4b78baad9d246d34b77f0e032cd35344f75587 https://github.com/galaxyproject/galaxy/commit/db4b78baad9d246d34b77f0e032c… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-composite.js M static/maps/mvc/tool/tool-form-composite.js.map M static/scripts/mvc/tool/tool-form-composite.js Log Message: ----------- Use same dom append call for tool and data steps Commit: 7b2d71e86ee9d57db0a4412b908448f03ec333a8 https://github.com/galaxyproject/galaxy/commit/7b2d71e86ee9d57db0a4412b9084… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M lib/galaxy/tools/parameters/basic.py Log Message: ----------- Add missing get_initial_value for collection parameters, remove unused repeat avoiding mechanism for now Commit: b34757b6b1dd71d189ea1fd2c44c6f938b9344b3 https://github.com/galaxyproject/galaxy/commit/b34757b6b1dd71d189ea1fd2c44c… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M lib/galaxy/model/__init__.py M lib/galaxy/tools/parameters/basic.py M lib/galaxy/workflow/modules.py Log Message: ----------- Use hda representative agent if collections are parsed Commit: bccf3d58f5afa0b95187583c099ba67d3cc60552 https://github.com/galaxyproject/galaxy/commit/bccf3d58f5afa0b95187583c099b… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M lib/galaxy/model/__init__.py M lib/galaxy/tools/parameters/dynamic_options.py Log Message: ----------- Add hda agent generation to dynamic options Commit: bd194a885db94b0655c5781a25c3e0b292484cd7 https://github.com/galaxyproject/galaxy/commit/bd194a885db94b0655c5781a25c3… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M lib/galaxy/model/__init__.py Log Message: ----------- Use one line if to determine atomic versus listed hda agents Commit: 65328ff3b7a9b2342b3acdc822a7620eb247b23d https://github.com/galaxyproject/galaxy/commit/65328ff3b7a9b2342b3acdc822a7… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M lib/galaxy/model/__init__.py M lib/galaxy/tools/parameters/basic.py M lib/galaxy/tools/parameters/dynamic_options.py M lib/galaxy/workflow/modules.py Log Message: ----------- Rename to_hda_agent to to_hda_representative Commit: 24ecf34c4f49b93d79d7d6b5f5d21aeec89733e0 https://github.com/galaxyproject/galaxy/commit/24ecf34c4f49b93d79d7d6b5f5d2… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M lib/galaxy/workflow/modules.py Log Message: ----------- Enhance collection to regular data field injection when multiple collections are parsed Commit: 4d6754f4a4e81b8dc3f90a32d72cfd9190077a2d https://github.com/galaxyproject/galaxy/commit/4d6754f4a4e81b8dc3f90a32d72c… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M templates/webapps/galaxy/workflow/run.mako Log Message: ----------- Remove get initial value without repeats call from workflow run mako Commit: 15aba09847b03940167c38eb8e3a24214db4f92f https://github.com/galaxyproject/galaxy/commit/15aba09847b03940167c38eb8e3a… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M lib/galaxy/tools/parameters/basic.py Log Message: ----------- Align spacing style of get_column_list function Commit: c8de0edc96d37be7ee7b32c11be74f39cb616b23 https://github.com/galaxyproject/galaxy/commit/c8de0edc96d37be7ee7b32c11be7… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M static/maps/mvc/tool/tool-form-composite.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/tool/tool-form-composite.js Log Message: ----------- Instantly display workflow form upgrade messages, avoid fade in Commit: 6bff8ce48b8fc19bec2d0b02aefc617f93a2d2e8 https://github.com/galaxyproject/galaxy/commit/6bff8ce48b8fc19bec2d0b02aefc… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-composite.js M client/galaxy/scripts/mvc/ui/ui-misc.js M static/maps/mvc/tool/tool-form-composite.js.map M static/maps/mvc/ui/ui-misc.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/tool/tool-form-composite.js M static/scripts/mvc/ui/ui-misc.js Log Message: ----------- Instantly display workflow form upgrade messages, avoid fade in Commit: 52879750a7c297f6fb45c8aeec2c14712d302343 https://github.com/galaxyproject/galaxy/commit/52879750a7c297f6fb45c8aeec2c… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M test/unit/tools/test_data_parameters.py Log Message: ----------- Align data tool parameter test cases for initial values Commit: efc850c32e15490df33dee5e164542791bc0b21c https://github.com/galaxyproject/galaxy/commit/efc850c32e15490df33dee5e1645… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-08-01 (Mon, 01 Aug 2016) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-composite.js M static/scripts/mvc/tool/tool-form-composite.js Log Message: ----------- Fix padding to avoid scroll bar Commit: 24573f7ffb8e5797ae1589a9353f5937d114417c https://github.com/galaxyproject/galaxy/commit/24573f7ffb8e5797ae1589a9353f… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-08-03 (Wed, 03 Aug 2016) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form-composite.js M client/galaxy/scripts/mvc/ui/ui-misc.js M lib/galaxy/model/__init__.py M lib/galaxy/tools/parameters/basic.py M lib/galaxy/tools/parameters/dynamic_options.py M lib/galaxy/webapps/galaxy/controllers/workflow.py M lib/galaxy/workflow/modules.py M static/maps/mvc/tool/tool-form-composite.js.map M static/maps/mvc/ui/ui-misc.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/tool/tool-form-composite.js M static/scripts/mvc/ui/ui-misc.js M templates/webapps/galaxy/workflow/run.mako M test/unit/tools/test_data_parameters.py Log Message: ----------- Merge branch 'inject_connected_inputs' into dev Compare: https://github.com/galaxyproject/galaxy/compare/66d5560da569...24573f7ffb8e

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