- galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] 29303a: the new Whoosh is compatible, we don't need our ow...
by GitHub 01 May '16

01 May '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 29303aeded07b015bf200168f22cd7c804e6a0e4 https://github.com/galaxyproject/galaxy/commit/29303aeded07b015bf200168f22c… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-04-29 (Fri, 29 Apr 2016) Changed paths: M lib/galaxy/dependencies/conda-environment.txt M lib/galaxy/dependencies/pinned-hashed-requirements.txt M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/dependencies/requirements.txt Log Message: ----------- the new Whoosh is compatible, we don't need our own also update some remnants of mercurial update Commit: 431c7707b5f5d9f424267b8e059c2e2d42deb9df https://github.com/galaxyproject/galaxy/commit/431c7707b5f5d9f424267b8e059c… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-05-01 (Sun, 01 May 2016) Changed paths: M lib/galaxy/dependencies/conda-environment.txt M lib/galaxy/dependencies/pinned-hashed-requirements.txt M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/dependencies/requirements.txt Log Message: ----------- Merge pull request #2276 from martenson/update-req requirements updates (end of custom Whoosh) Compare: https://github.com/galaxyproject/galaxy/compare/e0251890f8d0...431c7707b5f5

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[galaxyproject/galaxy] d0447f: Add validation check for data_source tools URL par...
by GitHub 01 May '16

01 May '16

Branch: refs/heads/release_16.04 Home: https://github.com/galaxyproject/galaxy Commit: d0447fea2bc6dd63f9f13ebbab685d151ecc5db9 https://github.com/galaxyproject/galaxy/commit/d0447fea2bc6dd63f9f13ebbab68… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-04-21 (Thu, 21 Apr 2016) Changed paths: M lib/galaxy/webapps/galaxy/controllers/tool_runner.py Log Message: ----------- Add validation check for data_source tools URL parameter Commit: 787b351404950ae33a1b601eab059d32c817a6fd https://github.com/galaxyproject/galaxy/commit/787b351404950ae33a1b601eab05… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-05-01 (Sun, 01 May 2016) Changed paths: M lib/galaxy/webapps/galaxy/controllers/tool_runner.py Log Message: ----------- Merge pull request #2208 from guerler/fix_error_message_001 [16.04] Add fixed validation check for data_source tools URL parameter Compare: https://github.com/galaxyproject/galaxy/compare/630a004e3797...787b35140495

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[galaxyproject/galaxy] f7fa63: it's called conda_ensure_channels
by GitHub 30 Apr '16

30 Apr '16

Branch: refs/heads/release_16.04 Home: https://github.com/galaxyproject/galaxy Commit: f7fa63365368cf3aa8ab81b8bd2762233bcd9490 https://github.com/galaxyproject/galaxy/commit/f7fa63365368cf3aa8ab81b8bd27… Author: Bjoern Gruening <bjoern.gruening(a)gmail.com> Date: 2016-04-27 (Wed, 27 Apr 2016) Changed paths: M lib/galaxy/tools/deps/__init__.py Log Message: ----------- it's called conda_ensure_channels Commit: 630a004e3797c9e39349af5f62e07326b9fa8f47 https://github.com/galaxyproject/galaxy/commit/630a004e3797c9e39349af5f62e0… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-04-30 (Sat, 30 Apr 2016) Changed paths: M lib/galaxy/tools/deps/__init__.py Log Message: ----------- Merge pull request #2255 from bgruening/release_16.04 [16.04] Update `_condarc` automatically Compare: https://github.com/galaxyproject/galaxy/compare/8b6729e8535c...630a004e3797

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[galaxyproject/usegalaxy-playbook] 9e4ed0: Updated slide rotation: Looking To Learn, Odometer...
by GitHub 29 Apr '16

29 Apr '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 9e4ed017dcff88b0431fb0789e52eb5514effe59 https://github.com/galaxyproject/usegalaxy-playbook/commit/9e4ed017dcff88b0… Author: tnabtaf <clements(a)galaxyproject.org> Date: 2016-04-29 (Fri, 29 Apr 2016) Changed paths: A files/galaxy/common/static/welcome_img/80PlusOdometer.png A files/galaxy/common/static/welcome_img/LookingToLearn.png A files/galaxy/common/static/welcome_img/RepeatExplorer.png M templates/galaxy/common/static/welcome.html.j2 Log Message: ----------- Updated slide rotation: Looking To Learn, Odometer 80, RepeatExplorer added.

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[galaxyproject/galaxy] 9ee0ee: Add grunt watcher on the .less files
by GitHub 29 Apr '16

29 Apr '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 9ee0ee5e940a5e3fd09b49b0883cdf1ddc8590c8 https://github.com/galaxyproject/galaxy/commit/9ee0ee5e940a5e3fd09b49b0883c… Author: Remi Marenco <remi.marenco(a)gmail.com> Date: 2016-04-29 (Fri, 29 Apr 2016) Changed paths: M client/grunt-tasks/style.js Log Message: ----------- Add grunt watcher on the .less files Commit: 41fe443f3157ad395d019fdd1d77684ec17fd003 https://github.com/galaxyproject/galaxy/commit/41fe443f3157ad395d019fdd1d77… Author: Remi Marenco <remi.marenco(a)gmail.com> Date: 2016-04-29 (Fri, 29 Apr 2016) Changed paths: M client/README.md Log Message: ----------- Add the documentation for watch-style Commit: ccdb29c216ec9889c7b669434799b8ca45f71fb2 https://github.com/galaxyproject/galaxy/commit/ccdb29c216ec9889c7b669434799… Author: Remi Marenco <remi.marenco(a)gmail.com> Date: 2016-04-29 (Fri, 29 Apr 2016) Changed paths: M client/README.md Log Message: ----------- Fix typo and more straightforward doc Commit: 89ca121211c2f73d84422c05ff443087bc804472 https://github.com/galaxyproject/galaxy/commit/89ca121211c2f73d84422c05ff44… Author: Remi Marenco <remi.marenco(a)gmail.com> Date: 2016-04-29 (Fri, 29 Apr 2016) Log Message: ----------- Merge the README Commit: b3d9558843baaaa04900c164410874863751c9c2 https://github.com/galaxyproject/galaxy/commit/b3d9558843baaaa04900c1644108… Author: Remi Marenco <remi.marenco(a)gmail.com> Date: 2016-04-29 (Fri, 29 Apr 2016) Changed paths: M client/README.md Log Message: ----------- Add the third element, maybe less weird Commit: e0251890f8d04f5e892a70adb8899c6e22c84c11 https://github.com/galaxyproject/galaxy/commit/e0251890f8d04f5e892a70adb889… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-04-29 (Fri, 29 Apr 2016) Changed paths: M client/README.md M client/grunt-tasks/style.js Log Message: ----------- Merge pull request #2274 from remimarenco/style_watch Add grunt watcher on the .less files Compare: https://github.com/galaxyproject/galaxy/compare/1282fb19838b...e0251890f8d0

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[galaxyproject/infrastructure-playbook] 0d6366: Install collectl on Galaxy servers
by GitHub 29 Apr '16

29 Apr '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 0d63662b4dbf6debb07870b71a9d11e196e29f0a https://github.com/galaxyproject/infrastructure-playbook/commit/0d63662b4db… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-04-29 (Fri, 29 Apr 2016) Changed paths: M taccenv/group_vars/galaxyservers.yml Log Message: ----------- Install collectl on Galaxy servers

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[galaxyproject/infrastructure-playbook] 66796a: Install packages on galaxy nodes...
by GitHub 29 Apr '16

29 Apr '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 66796a0582dae0a56965c5f0b08538f304e9d748 https://github.com/galaxyproject/infrastructure-playbook/commit/66796a0582d… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-04-29 (Fri, 29 Apr 2016) Changed paths: M jetstreamiuenv/playbook.yml M jetstreamtaccenv/playbook.yml Log Message: ----------- Install packages on galaxy nodes...

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[galaxyproject/infrastructure-playbook] 3a376a: Install collectl on all nodes
by GitHub 29 Apr '16

29 Apr '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 3a376ac9f4ab48186623c737aa5b2fcba65d97e5 https://github.com/galaxyproject/infrastructure-playbook/commit/3a376ac9f4a… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-04-29 (Fri, 29 Apr 2016) Changed paths: M jetstreamiuenv/group_vars/galaxynodes.yml M jetstreamtaccenv/group_vars/galaxynodes.yml M taccenv/group_vars/galaxynodes.yml Log Message: ----------- Install collectl on all nodes

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[galaxyproject/infrastructure-playbook] 4893c5: Respun TACC instances now that the instance flavor...
by GitHub 29 Apr '16

29 Apr '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 4893c529705e1d6c1588440f972a7da4dfe6c61a https://github.com/galaxyproject/infrastructure-playbook/commit/4893c529705… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-04-29 (Fri, 29 Apr 2016) Changed paths: M jetstreamtaccenv/group_vars/slurmclients.yml M jetstreamtaccenv/inventory Log Message: ----------- Respun TACC instances now that the instance flavors are fixed

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[galaxyproject/usegalaxy-playbook] 5e6501: Update main version on welcome page and distribute...
by GitHub 29 Apr '16

29 Apr '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 5e6501c97dbf6929b0e63888450f5ee9e601e472 https://github.com/galaxyproject/usegalaxy-playbook/commit/5e6501c97dbf6929… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-04-29 (Fri, 29 Apr 2016) Changed paths: M files/galaxy/usegalaxy.org/var/integrated_tool_panel.xml M files/galaxy/usegalaxy.org/var/shed_tool_conf.xml M files/galaxy/usegalaxy.org/var/shed_tool_data_table_conf.xml M production/group_vars/all.yml Log Message: ----------- Update main version on welcome page and distribute new tool conf for updated HISAT2

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