- galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] 3ffa60: Deprecate old library UI in the "Shared Data" menu...
by GitHub 17 Nov '15

17 Nov '15

Branch: refs/heads/release_15.10 Home: https://github.com/galaxyproject/galaxy Commit: 3ffa607c15a70a532a7d21a0b3b1a46171e53171 https://github.com/galaxyproject/galaxy/commit/3ffa607c15a70a532a7d21a0b3b1… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2015-11-17 (Tue, 17 Nov 2015) Changed paths: M client/galaxy/scripts/galaxy.menu.js M static/maps/galaxy.menu.js.map M static/scripts/galaxy.menu.js Log Message: ----------- Deprecate old library UI in the "Shared Data" menu. Commit: 05e66827d40151c0cd1729299fa82a510138359e https://github.com/galaxyproject/galaxy/commit/05e66827d40151c0cd1729299fa8… Author: John Chilton <jmchilton(a)gmail.com> Date: 2015-11-17 (Tue, 17 Nov 2015) Changed paths: M client/galaxy/scripts/galaxy.menu.js M static/maps/galaxy.menu.js.map M static/scripts/galaxy.menu.js Log Message: ----------- Merge pull request #1112 from nsoranzo/release_15.10_data_libraries_beta [15.10] Deprecate old library UI in the "Shared Data" menu. Compare: https://github.com/galaxyproject/galaxy/compare/e61e30cde549...05e66827d401

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[galaxyproject/galaxy] 937f99: Fix API installation of tool_dependencies
by GitHub 17 Nov '15

17 Nov '15

Branch: refs/heads/release_15.10 Home: https://github.com/galaxyproject/galaxy Commit: 937f99b851e2078152c851a0b552c00b99167747 https://github.com/galaxyproject/galaxy/commit/937f99b851e2078152c851a0b552… Author: Björn Grüning <bjoern(a)gruenings.eu> Date: 2015-11-15 (Sun, 15 Nov 2015) Changed paths: M lib/galaxy/webapps/tool_shed/api/repositories.py Log Message: ----------- Fix API installation of tool_dependencies This should fix an installation issue with tool_dependencies via the API. Tool dependency repositories to not have any tools specified and with this no metadata associated. It was broken in https://github.com/galaxyproject/galaxy/commit/bb6a784f13ff3f91762244d44884… So I think this should be part of 15.10. Thanks to Greg for fixing this one. Commit: e61e30cde549c448375b555aadfc85b235b4871a https://github.com/galaxyproject/galaxy/commit/e61e30cde549c448375b555aadfc… Author: John Chilton <jmchilton(a)gmail.com> Date: 2015-11-17 (Tue, 17 Nov 2015) Changed paths: M lib/galaxy/webapps/tool_shed/api/repositories.py Log Message: ----------- Merge pull request #1100 from martenson/fix-ts-api-install [15.10] Fix API installation of tool_dependencies Compare: https://github.com/galaxyproject/galaxy/compare/7150983aab78...e61e30cde549

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[galaxyproject/galaxy] 2374c5: Fix removal of comment missed in merge.
by GitHub 17 Nov '15

17 Nov '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 2374c55f7233a9b2ff4a72ff3c2535ce9dc732e3 https://github.com/galaxyproject/galaxy/commit/2374c55f7233a9b2ff4a72ff3c25… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-11-17 (Tue, 17 Nov 2015) Changed paths: M client/galaxy/scripts/galaxy-app-base.js Log Message: ----------- Fix removal of comment missed in merge.

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[galaxyproject/galaxy] fef1e5: Fix job permission handling
by GitHub 17 Nov '15

17 Nov '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: fef1e548bba39c856f6086f0eb2300e6a50d8559 https://github.com/galaxyproject/galaxy/commit/fef1e548bba39c856f6086f0eb23… Author: guerler <aysam.guerler(a)gmail.com> Date: 2015-11-06 (Fri, 06 Nov 2015) Changed paths: M lib/galaxy/webapps/galaxy/api/jobs.py Log Message: ----------- Fix job permission handling Catch unavailable history Fix test Commit: 7e6df4f46fe0eed8328b57543b069911e4988d02 https://github.com/galaxyproject/galaxy/commit/7e6df4f46fe0eed8328b57543b06… Author: John Chilton <jmchilton(a)gmail.com> Date: 2015-11-09 (Mon, 09 Nov 2015) Changed paths: M tools/stats/gsummary.py Log Message: ----------- Merge pull request #1043 from jmchilton/release_15.10-forward-port [15.10] Forward port 15.07 fix to 15.10. Commit: a8147327af2e8a90108d11d7fa93fe4d4893f6ab https://github.com/galaxyproject/galaxy/commit/a8147327af2e8a90108d11d7fa93… Author: guerler <aysam.guerler(a)gmail.com> Date: 2015-11-09 (Mon, 09 Nov 2015) Changed paths: M lib/galaxy/webapps/galaxy/api/jobs.py Log Message: ----------- Derive permission from job outputs Remove history manager Use dataset manager Commit: 36797b3195c84b416710029d86cf7b7a24c1faf0 https://github.com/galaxyproject/galaxy/commit/36797b3195c84b416710029d86cf… Author: Marius van den Beek <m.vandenbeek(a)gmail.com> Date: 2015-11-10 (Tue, 10 Nov 2015) Changed paths: M static/maps/mvc/library/library-folderrow-view.js.map M static/scripts/mvc/library/library-folderrow-view.js Log Message: ----------- Add changed static files. Commit: ad016460dc2799e95ff26fdd0a69bf605f78358b https://github.com/galaxyproject/galaxy/commit/ad016460dc2799e95ff26fdd0a69… Author: Marius van den Beek <m.vandenbeek(a)gmail.com> Date: 2015-11-10 (Tue, 10 Nov 2015) Changed paths: M client/galaxy/scripts/mvc/library/library-folderrow-view.js Log Message: ----------- Fix import of history datasets into library. Commit: b88864586c760e0e644bdc32c5d2349b1613446c https://github.com/galaxyproject/galaxy/commit/b88864586c760e0e644bdc32c5d2… Author: guerler <aysam.guerler(a)gmail.com> Date: 2015-11-10 (Tue, 10 Nov 2015) Changed paths: M lib/galaxy/tools/parameters/dynamic_options.py Log Message: ----------- Fix warning statement Commit: 5603a96aecb29c7065206d8797205f49f2ed32b6 https://github.com/galaxyproject/galaxy/commit/5603a96aecb29c7065206d879720… Author: John Chilton <jmchilton(a)gmail.com> Date: 2015-11-10 (Tue, 10 Nov 2015) Changed paths: M client/galaxy/scripts/mvc/library/library-folderrow-view.js M static/maps/mvc/library/library-folderrow-view.js.map M static/scripts/mvc/library/library-folderrow-view.js Log Message: ----------- Merge pull request #1054 from martenson/fix-datalib-hist-import [15.10] Fix datalib hist import Commit: b2723e7467c5fb9722a1c6cb009251b0deaf9bc4 https://github.com/galaxyproject/galaxy/commit/b2723e7467c5fb9722a1c6cb0092… Author: guerler <aysam.guerler(a)gmail.com> Date: 2015-11-10 (Tue, 10 Nov 2015) Changed paths: M lib/galaxy/webapps/galaxy/api/jobs.py M test/api/test_jobs.py Log Message: ----------- Disable invalid test case. Add validation criteria. Fix comments Fix comment Commit: 65807013957c3f845b0b8fd793b52b6d9f057505 https://github.com/galaxyproject/galaxy/commit/65807013957c3f845b0b8fd793b5… Author: guerler <aysam.guerler(a)gmail.com> Date: 2015-11-10 (Tue, 10 Nov 2015) Changed paths: M client/galaxy/scripts/galaxy-app-base.js M lib/galaxy/managers/configuration.py M static/maps/galaxy-app-base.js.map M static/scripts/galaxy-app-base.js Log Message: ----------- Fix parsing of message configuration Fix default value Add root to Galaxy object Commit: e4c9f06d3bd319cc1addfdf3d6fd1f6e48e9e4f3 https://github.com/galaxyproject/galaxy/commit/e4c9f06d3bd319cc1addfdf3d6fd… Author: John Chilton <jmchilton(a)gmail.com> Date: 2015-11-11 (Wed, 11 Nov 2015) Changed paths: M test/api/helpers.py Log Message: ----------- Attempt to fix timing out tests. Continuation of work started by @nsoranzo here 92a152d89c507168a6085cc34acfa13566b6eda9. In addition to increasing the max timeout it will now print the timeout in the assertion error so we can see if it is being overridden and attempt to adjust timeouts too small. Commit: c85b0d9b0b2d6853b216ebb691987632a3b6bdc6 https://github.com/galaxyproject/galaxy/commit/c85b0d9b0b2d6853b216ebb69198… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-11-11 (Wed, 11 Nov 2015) Changed paths: M lib/galaxy/tools/parameters/dynamic_options.py Log Message: ----------- Merge pull request #1060 from guerler/fix_assert_000 [15.10] Fix warning statement Commit: 177f73fcdb53ab4e172f7cf7f7a9950d4c842cd3 https://github.com/galaxyproject/galaxy/commit/177f73fcdb53ab4e172f7cf7f7a9… Author: John Chilton <jmchilton(a)gmail.com> Date: 2015-11-11 (Wed, 11 Nov 2015) Changed paths: M test/api/test_workflow_extraction.py Log Message: ----------- Fix lower timeout caught by @nsoranzo. Commit: 4f72178a9568e35f99a5824d66ce4c6911e50d93 https://github.com/galaxyproject/galaxy/commit/4f72178a9568e35f99a5824d66ce… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-11-11 (Wed, 11 Nov 2015) Changed paths: M lib/galaxy/webapps/galaxy/api/jobs.py M test/api/test_jobs.py Log Message: ----------- Merge pull request #1038 from guerler/fix_imported_rerun_000 [15.10] Fix job rerun for imported histories Commit: 6953bdf704f3e140ffc47f849fc54dc3d4c37013 https://github.com/galaxyproject/galaxy/commit/6953bdf704f3e140ffc47f849fc5… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-11-11 (Wed, 11 Nov 2015) Changed paths: M client/galaxy/scripts/galaxy-app-base.js M lib/galaxy/managers/configuration.py M static/maps/galaxy-app-base.js.map M static/scripts/galaxy-app-base.js Log Message: ----------- Merge pull request #1059 from guerler/fix_message_000 [15.10] Fix parsing of message configuration Commit: 559c89afde2bb8b2be28d52a9973b72aa6c03edf https://github.com/galaxyproject/galaxy/commit/559c89afde2bb8b2be28d52a9973… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2015-11-11 (Wed, 11 Nov 2015) Changed paths: M test/casperjs/anon-history-tests.js M test/casperjs/api-hda-tests.js M test/casperjs/api-history-tests.js M test/casperjs/hda-state-tests.js M test/casperjs/history-panel-tests.js M test/casperjs/modules/historypanel.js Log Message: ----------- Testing: update casperjs functional tests; change expected size string; remove nice_size from expected history api keys; remove test for rerun button on uploaded dataset; attempt to fix linux+python unicode error in hda api tests Commit: 3a78d9df740cac8bdf9f0a3a0c622fc85506aba0 https://github.com/galaxyproject/galaxy/commit/3a78d9df740cac8bdf9f0a3a0c62… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2015-11-11 (Wed, 11 Nov 2015) Changed paths: M test/api/helpers.py M test/api/test_workflow_extraction.py Log Message: ----------- Merge pull request #1062 from jmchilton/test_fixes [15.10] Test timeout fixes? Commit: a3034ab6d99d5087a7dcc1de0360fe2ebafde40f https://github.com/galaxyproject/galaxy/commit/a3034ab6d99d5087a7dcc1de0360… Author: Björn Grüning <bjoern(a)gruenings.eu> Date: 2015-11-12 (Thu, 12 Nov 2015) Changed paths: M test/casperjs/anon-history-tests.js M test/casperjs/api-hda-tests.js M test/casperjs/api-history-tests.js M test/casperjs/hda-state-tests.js M test/casperjs/history-panel-tests.js M test/casperjs/modules/historypanel.js Log Message: ----------- Merge pull request #1065 from jmchilton/test_fix_3 [15.10] Testing: update casperjs functional tests; change expected size strin… Commit: d824cca31fcebe97b8c7cfd1040eecbb9e5f03d3 https://github.com/galaxyproject/galaxy/commit/d824cca31fcebe97b8c7cfd1040e… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-11-12 (Thu, 12 Nov 2015) Changed paths: M config/plugins/interactive_environments/ipython/config/ipython.ini.sample M config/plugins/interactive_environments/ipython/templates/ipython.mako M lib/galaxy/web/base/interactive_environments.py Log Message: ----------- In interactive environments, the /import volume can now be made conditional. Also, fix a bug when using a proxy for the node proxy and cookie_path is / Commit: c4351413265796dacc15b8e3fc7382b8514f5b59 https://github.com/galaxyproject/galaxy/commit/c4351413265796dacc15b8e3fc73… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-11-13 (Fri, 13 Nov 2015) Changed paths: M config/plugins/interactive_environments/ipython/config/ipython.ini.sample Log Message: ----------- Built image tag differs from intended. Commit: 64b084067c73cea1de455e4816d73101c3752165 https://github.com/galaxyproject/galaxy/commit/64b084067c73cea1de455e4816d7… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-11-13 (Fri, 13 Nov 2015) Changed paths: M config/plugins/interactive_environments/ipython/config/ipython.ini.sample M config/plugins/interactive_environments/ipython/templates/ipython.mako M lib/galaxy/web/base/interactive_environments.py Log Message: ----------- Merge pull request #1076 from natefoo/ie-conditional-import-volume [15.10] Fix a bug in IEs when proxying the proxy Commit: 75e7e4c2cf7a0cb18b8096c8119e4b0cb207e2a3 https://github.com/galaxyproject/galaxy/commit/75e7e4c2cf7a0cb18b8096c8119e… Author: Dave B <dave(a)bx.psu.edu> Date: 2015-11-14 (Sat, 14 Nov 2015) Changed paths: M lib/galaxy/webapps/tool_shed/framework/middleware/hg.py Log Message: ----------- Fix 500 error when attempting to update installed repository. Commit: 7150983aab78e4ceb71f8ad2592369523899d768 https://github.com/galaxyproject/galaxy/commit/7150983aab78e4ceb71f8ad25923… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-11-14 (Sat, 14 Nov 2015) Changed paths: M lib/galaxy/webapps/tool_shed/framework/middleware/hg.py Log Message: ----------- Merge pull request #1093 from martenson/release_15.10 [15.10] Fix 500 error when attempting to update installed repository. Commit: d8152f3336d68fbf9bdecd89fd866c94338c3557 https://github.com/galaxyproject/galaxy/commit/d8152f3336d68fbf9bdecd89fd86… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-11-17 (Tue, 17 Nov 2015) Changed paths: M client/galaxy/scripts/galaxy-app-base.js M config/plugins/interactive_environments/ipython/config/ipython.ini.sample M config/plugins/interactive_environments/ipython/templates/ipython.mako M lib/galaxy/managers/configuration.py M lib/galaxy/tools/parameters/dynamic_options.py M lib/galaxy/web/base/interactive_environments.py M lib/galaxy/webapps/galaxy/api/jobs.py M static/maps/galaxy-app-base.js.map M static/scripts/galaxy-app-base.js M test/api/helpers.py M test/api/test_jobs.py M test/api/test_workflow_extraction.py Log Message: ----------- Merge branch 'release_15.10' into dev Compare: https://github.com/galaxyproject/galaxy/compare/727167b8d150...d8152f3336d6

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[galaxyproject/galaxy] 6d4328: remove whitespace at line ends
by GitHub 16 Nov '15

16 Nov '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 6d4328766baa3f8bf35cc5824d870d8fc86e481f https://github.com/galaxyproject/galaxy/commit/6d4328766baa3f8bf35cc5824d87… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-11-13 (Fri, 13 Nov 2015) Changed paths: M run_tests.sh Log Message: ----------- remove whitespace at line ends Commit: 7c863eb2aeaa1418dde26ed2101b88435b3a763b https://github.com/galaxyproject/galaxy/commit/7c863eb2aeaa1418dde26ed2101b… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-11-13 (Fri, 13 Nov 2015) Changed paths: M run_tests.sh Log Message: ----------- update the image tag Commit: 727167b8d15063920d01c2f7651cc4a76c2caafc https://github.com/galaxyproject/galaxy/commit/727167b8d15063920d01c2f7651c… Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com> Date: 2015-11-16 (Mon, 16 Nov 2015) Changed paths: M run_tests.sh Log Message: ----------- Merge pull request #1083 from martenson/update-testing-docker-image Update testing docker image Compare: https://github.com/galaxyproject/galaxy/compare/51f8e2121875...727167b8d150

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[galaxyproject/galaxy] a610dc: Better error when tool shed repo dir missing
by GitHub 16 Nov '15

16 Nov '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: a610dc59a85519e3a84455ae5b2b23c3390017a5 https://github.com/galaxyproject/galaxy/commit/a610dc59a85519e3a84455ae5b2b… Author: Lance Parsons <lparsons(a)princeton.edu> Date: 2015-11-16 (Mon, 16 Nov 2015) Changed paths: M lib/tool_shed/galaxy_install/tool_dependencies/recipe/tag_handler.py Log Message: ----------- Better error when tool shed repo dir missing Check for a tool shed repository directory and throw exception if it's missing. This avoids a cryptic NoneType error when searching for tool_dependencies.xml file and directory was not found. Commit: 51f8e21218757fa82e30986a946bbb7fc5c7a2ac https://github.com/galaxyproject/galaxy/commit/51f8e21218757fa82e30986a946b… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-11-16 (Mon, 16 Nov 2015) Changed paths: M lib/tool_shed/galaxy_install/tool_dependencies/recipe/tag_handler.py Log Message: ----------- Merge pull request #1107 from lparsons/tool_shed_repo_dir_check Better error when tool shed repo dir missing Compare: https://github.com/galaxyproject/galaxy/compare/0b788e97314a...51f8e2121875

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[galaxyproject/galaxy] 0a09de: Show welcome page with required login, remove ifra...
by GitHub 16 Nov '15

16 Nov '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 0a09de5453540b55ddb43c63c430a5edfff120b1 https://github.com/galaxyproject/galaxy/commit/0a09de5453540b55ddb43c63c430… Author: guerler <aysam.guerler(a)gmail.com> Date: 2015-11-16 (Mon, 16 Nov 2015) Changed paths: M client/galaxy/scripts/mvc/app/app-login.js M client/galaxy/scripts/utils/utils.js M static/maps/mvc/app/app-login.js.map M static/maps/utils/utils.js.map M static/scripts/mvc/app/app-login.js M static/scripts/utils/utils.js Log Message: ----------- Show welcome page with required login, remove iframes Reinsert iframe for login Use iframes Commit: 0b788e97314a9e88b82fa3799127524b16a2adc2 https://github.com/galaxyproject/galaxy/commit/0b788e97314a9e88b82fa3799127… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-11-16 (Mon, 16 Nov 2015) Changed paths: M client/galaxy/scripts/mvc/app/app-login.js M client/galaxy/scripts/utils/utils.js M static/maps/mvc/app/app-login.js.map M static/maps/utils/utils.js.map M static/scripts/mvc/app/app-login.js M static/scripts/utils/utils.js Log Message: ----------- Merge pull request #1105 from guerler/revise_require_login_003 Show welcome page with required login Compare: https://github.com/galaxyproject/galaxy/compare/65301bb9c85a...0b788e97314a

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[galaxyproject/galaxy] 39fe6b: Rebuild styles, fixes history panel green being wr...
by GitHub 16 Nov '15

16 Nov '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 39fe6b44bfbab9f490524dff902ceb80bc52a2ee https://github.com/galaxyproject/galaxy/commit/39fe6b44bfbab9f490524dff902c… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-11-16 (Mon, 16 Nov 2015) Changed paths: M static/style/blue/autocomplete_tagging.css M static/style/blue/base.css M static/style/blue/embed_item.css M static/style/blue/iphone.css M static/style/blue/library.css M static/style/blue/trackster.css Log Message: ----------- Rebuild styles, fixes history panel green being wrong. Commit: 65301bb9c85a1c09fdd36890b68593b320fcf3e7 https://github.com/galaxyproject/galaxy/commit/65301bb9c85a1c09fdd36890b685… Author: Aysam Guerler <aysam.guerler(a)gmail.com> Date: 2015-11-16 (Mon, 16 Nov 2015) Changed paths: M static/style/blue/autocomplete_tagging.css M static/style/blue/base.css M static/style/blue/embed_item.css M static/style/blue/iphone.css M static/style/blue/library.css M static/style/blue/trackster.css Log Message: ----------- Merge pull request #1102 from dannon/style_rebuild Rebuild styles, fixes history panel green being wrong. Compare: https://github.com/galaxyproject/galaxy/compare/d2d2ff12775b...65301bb9c85a

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[galaxyproject/galaxy] b19e71: Update run_tests.sh help for #844.
by GitHub 16 Nov '15

16 Nov '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: b19e71ec465c7145840acf684f8f09eeebb99b5a https://github.com/galaxyproject/galaxy/commit/b19e71ec465c7145840acf684f8f… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2015-11-16 (Mon, 16 Nov 2015) Changed paths: M run_tests.sh Log Message: ----------- Update run_tests.sh help for #844. Commit: d2d2ff12775bc630ff6705c7989fe84fed9cbdbb https://github.com/galaxyproject/galaxy/commit/d2d2ff12775bc630ff6705c7989f… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-11-16 (Mon, 16 Nov 2015) Changed paths: M run_tests.sh Log Message: ----------- Merge pull request #1101 from nsoranzo/run_tests_sh Update run_tests.sh help for #844. Compare: https://github.com/galaxyproject/galaxy/compare/13eb47e78933...d2d2ff12775b

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[galaxyproject/galaxy] daf505: Point organization document to issue handling for ...
by GitHub 16 Nov '15

16 Nov '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: daf505eaccd751a4ed6d34f42f32cd890ad162a5 https://github.com/galaxyproject/galaxy/commit/daf505eaccd751a4ed6d34f42f32… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-10-22 (Thu, 22 Oct 2015) Changed paths: M doc/source/project/organization.rst Log Message: ----------- Point organization document to issue handling for binding procedure Commit: bc217b6a278cdb7d5078d24b79db8116e9405239 https://github.com/galaxyproject/galaxy/commit/bc217b6a278cdb7d5078d24b79db… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-10-22 (Thu, 22 Oct 2015) Changed paths: M doc/source/project/organization.rst Log Message: ----------- Place correctly after the last section. Commit: 9bbb3b97bd32a83303168a839a68070c822d04c4 https://github.com/galaxyproject/galaxy/commit/9bbb3b97bd32a83303168a839a68… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-10-23 (Fri, 23 Oct 2015) Changed paths: M doc/source/project/organization.rst Log Message: ----------- Fix link from org to issues. Commit: 13eb47e789336f4ebfe0923ae07f0db81afd2d63 https://github.com/galaxyproject/galaxy/commit/13eb47e789336f4ebfe0923ae07f… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2015-11-16 (Mon, 16 Nov 2015) Changed paths: M doc/source/project/organization.rst Log Message: ----------- Merge pull request #1020 from dannon/issue_procedure [PROCEDURES] Issue procedure linkage Compare: https://github.com/galaxyproject/galaxy/compare/cfe45d8e0c35...13eb47e78933

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