- galaxy-commits - lists.galaxyproject.org

[galaxyproject/infrastructure-playbook] d6751d: Bring the kerberos, ldap, and nfs roles over from ...
by GitHub 04 Nov '15

04 Nov '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: d6751dc6b5e6eb1fea81689ca7a66a709d562ffc https://github.com/galaxyproject/infrastructure-playbook/commit/d6751dc6b5e… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-11-04 (Wed, 04 Nov 2015) Changed paths: M galaxyenv/group_vars/baseenv.yml A galaxyenv/group_vars/liteenv.yml M galaxyenv/host_vars/mjolnir0.galaxyproject.org.yml M galaxyenv/inventory M playbook.yml A roles/kerberos/defaults/main.yml A roles/kerberos/tasks/auth.yml A roles/kerberos/tasks/k5login.yml A roles/kerberos/tasks/main.yml A roles/kerberos/templates/krb5.conf.j2 A roles/ldap/files/debian-nsswitch.conf A roles/ldap/handlers/main.yml A roles/ldap/tasks/main.yml A roles/ldap/tasks/nss.yml A roles/ldap/templates/ldap.conf.j2 A roles/ldap/vars/debian_family.yml A roles/ldap/vars/default.yml A roles/ldap/vars/ubuntu.yml A roles/nfs/defaults/main.yml A roles/nfs/files/default-nfs-common A roles/nfs/handlers/main.yml A roles/nfs/tasks/ldap.yml A roles/nfs/tasks/main.yml A roles/nfs/templates/default-autofs.j2 A roles/nfs/templates/idmapd.conf.j2 Log Message: ----------- Bring the kerberos, ldap, and nfs roles over from the private playbook and combine them into a "lite" env for galaxy hosts that does the auth and ldap stuff but without afs. Make mjolnir0 use the lite env.

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[galaxyproject/usegalaxy-playbook] 5e9e49: Readme formatting
by GitHub 04 Nov '15

04 Nov '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 5e9e49fcd98c1aa2b5bfd2071fe015bc64084846 https://github.com/galaxyproject/usegalaxy-playbook/commit/5e9e49fcd98c1aa2… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-11-04 (Wed, 04 Nov 2015) Changed paths: M README.md Log Message: ----------- Readme formatting

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[galaxyproject/usegalaxy-playbook] eec6b5: Add instructions on how to restart Galaxy Test aft...
by GitHub 04 Nov '15

04 Nov '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: eec6b5ce1909efc3ae2fa1aa1287035603134307 https://github.com/galaxyproject/usegalaxy-playbook/commit/eec6b5ce1909efc3… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-11-04 (Wed, 04 Nov 2015) Changed paths: M README.md Log Message: ----------- Add instructions on how to restart Galaxy Test after an update.

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[galaxyproject/usegalaxy-playbook] f36a35: Add sanitize_whitelist for both servers in mutable...
by GitHub 04 Nov '15

04 Nov '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: f36a35849b6213d134156dfc7f2741a207fa9c54 https://github.com/galaxyproject/usegalaxy-playbook/commit/f36a35849b6213d1… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-11-04 (Wed, 04 Nov 2015) Changed paths: M stage/group_vars/galaxyservers.yml Log Message: ----------- Add sanitize_whitelist for both servers in mutable configs.

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[galaxyproject/usegalaxy-playbook] 24d737: Mutable configs.
by GitHub 04 Nov '15

04 Nov '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 24d737b54cfdad8038760704dac68fb7509833b4 https://github.com/galaxyproject/usegalaxy-playbook/commit/24d737b54cfdad80… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-11-04 (Wed, 04 Nov 2015) Changed paths: M files/galaxy/test.galaxyproject.org/var/integrated_tool_panel.xml M files/galaxy/test.galaxyproject.org/var/shed_tool_conf.xml M files/galaxy/test.galaxyproject.org/var/shed_tool_data_table_conf.xml Log Message: ----------- Mutable configs.

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[galaxyproject/usegalaxy-playbook] dcb302: Fix copypasta.
by GitHub 04 Nov '15

04 Nov '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: dcb3023ba8390105c1eca869c3be4958fd40036d https://github.com/galaxyproject/usegalaxy-playbook/commit/dcb3023ba8390105… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-11-04 (Wed, 04 Nov 2015) Changed paths: M production/group_vars/galaxyservers.yml Log Message: ----------- Fix copypasta.

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[galaxyproject/usegalaxy-playbook] 818b92: Add sanitize_whitelist files to mutable configs.
by GitHub 04 Nov '15

04 Nov '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 818b9203aced5ea74568b6c00c39f79abda2c7cb https://github.com/galaxyproject/usegalaxy-playbook/commit/818b9203aced5ea7… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-11-04 (Wed, 04 Nov 2015) Changed paths: M production/group_vars/galaxyservers.yml Log Message: ----------- Add sanitize_whitelist files to mutable configs.

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[galaxyproject/infrastructure-playbook] 910371: Update common_roles
by GitHub 04 Nov '15

04 Nov '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 910371e63e950a4c737c0a6ddb67af72786556a9 https://github.com/galaxyproject/infrastructure-playbook/commit/910371e63e9… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-11-04 (Wed, 04 Nov 2015) Changed paths: M common_roles Log Message: ----------- Update common_roles Commit: 9ccfe62f803c62f03fe66cbda8fbb7356133a91d https://github.com/galaxyproject/infrastructure-playbook/commit/9ccfe62f803… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-11-04 (Wed, 04 Nov 2015) Changed paths: A galaxyenv/host_vars/mjolnir0.galaxyproject.org.yml M galaxyenv/inventory A galaxyenv/secret_host_vars/mjolnir0.galaxyproject.org.yml M playbook.yml Log Message: ----------- Add mjolnir0, a starforge builder Compare: https://github.com/galaxyproject/infrastructure-playbook/compare/cf8a746f22…

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[galaxyproject/galaxy] 4fc500: Fixes broken env-var declarations for tools with w...
by GitHub 04 Nov '15

04 Nov '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 4fc500a5c9eaddbb1cb1ae420fe2b2c19d206446 https://github.com/galaxyproject/galaxy/commit/4fc500a5c9eaddbb1cb1ae420fe2… Author: youri <y.hoogstrate(a)erasmusmc.nl> Date: 2015-11-04 (Wed, 04 Nov 2015) Changed paths: M lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py Log Message: ----------- Fixes broken env-var declarations for tools with weird chars in their name Commit: 8c0b9468a20ad20530ad290136fab351fca306d3 https://github.com/galaxyproject/galaxy/commit/8c0b9468a20ad20530ad290136fa… Author: youri <y.hoogstrate(a)erasmusmc.nl> Date: 2015-11-04 (Wed, 04 Nov 2015) Changed paths: M lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py Log Message: ----------- Replacement of dots Commit: afa65f4d9a3684f4870815709e852927e34bfdb9 https://github.com/galaxyproject/galaxy/commit/afa65f4d9a3684f4870815709e85… Author: Eric Rasche <rasche.eric(a)gmail.com> Date: 2015-11-04 (Wed, 04 Nov 2015) Changed paths: M lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py Log Message: ----------- Merge pull request #1028 from yhoogstrate/step_handler_fix Fixes broken env-var declarations for tools with weird chars in their… Compare: https://github.com/galaxyproject/galaxy/compare/1649570e7806...afa65f4d9a36

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[galaxyproject/galaxy] 0fe684: Fix upload button style
by GitHub 04 Nov '15

04 Nov '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 0fe684c688a86a0f8398191e66794f22adf5cf5d https://github.com/galaxyproject/galaxy/commit/0fe684c688a86a0f8398191e6679… Author: guerler <aysam.guerler(a)gmail.com> Date: 2015-11-04 (Wed, 04 Nov 2015) Changed paths: M client/galaxy/scripts/mvc/upload/upload-button.js M client/galaxy/style/less/upload.less M static/maps/mvc/upload/upload-button.js.map M static/scripts/mvc/upload/upload-button.js M static/style/blue/base.css Log Message: ----------- Fix upload button style More fixes Commit: 1649570e7806315a235b4e9799a74e6e3e16887f https://github.com/galaxyproject/galaxy/commit/1649570e7806315a235b4e9799a7… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-11-04 (Wed, 04 Nov 2015) Changed paths: M client/galaxy/scripts/mvc/upload/upload-button.js M client/galaxy/style/less/upload.less M static/maps/mvc/upload/upload-button.js.map M static/scripts/mvc/upload/upload-button.js M static/style/blue/base.css Log Message: ----------- Rebuild client styles, merge. Compare: https://github.com/galaxyproject/galaxy/compare/4d05a5a3ed02...1649570e7806

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