- galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] dde919: Add SearchGuiArchive datatype to binary
by GitHub 19 Oct '15

19 Oct '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: dde91947ac3c0c5c4089dbe94999089ddf2709ce https://github.com/galaxyproject/galaxy/commit/dde91947ac3c0c5c4089dbe94999… Author: Jim Johnson <jj(a)umn.edu> Date: 2015-10-14 (Wed, 14 Oct 2015) Changed paths: M config/datatypes_conf.xml.sample Log Message: ----------- Add SearchGuiArchive datatype to binary Commit: 54ddc983751d66d26caf448fe4b2c2d2533b4d53 https://github.com/galaxyproject/galaxy/commit/54ddc983751d66d26caf448fe4b2… Author: Jim Johnson <jj(a)umn.edu> Date: 2015-10-14 (Wed, 14 Oct 2015) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Update binary.py Commit: e88f58a3e5fae829b54eaf2dfdc5f3a088233d29 https://github.com/galaxyproject/galaxy/commit/e88f58a3e5fae829b54eaf2dfdc5… Author: Jim Johnson <jj(a)umn.edu> Date: 2015-10-14 (Wed, 14 Oct 2015) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Correct pep8 errors Commit: c869dde1e0abe964d849621b5fca2bf351ac36d4 https://github.com/galaxyproject/galaxy/commit/c869dde1e0abe964d849621b5fca… Author: Jim Johnson <jj(a)umn.edu> Date: 2015-10-14 (Wed, 14 Oct 2015) Changed paths: M config/datatypes_conf.xml.sample Log Message: ----------- Fix typo. Commit: 91e46701de52b2bcdbb4d9ce451a20d823daf269 https://github.com/galaxyproject/galaxy/commit/91e46701de52b2bcdbb4d9ce451a… Author: Jim Johnson <jj(a)umn.edu> Date: 2015-10-14 (Wed, 14 Oct 2015) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Another attempt at pep8 compliance Commit: 123bf620df332b72c23357aea0cfab97779ce680 https://github.com/galaxyproject/galaxy/commit/123bf620df332b72c23357aea0cf… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-10-19 (Mon, 19 Oct 2015) Changed paths: M config/datatypes_conf.xml.sample M lib/galaxy/datatypes/binary.py Log Message: ----------- Merge pull request #914 from jj-umn/patch-2 Add searchgui datatype Compare: https://github.com/galaxyproject/galaxy/compare/ca4a09b78c8d...123bf620df33

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[galaxyproject/galaxy] 15a8c5: fix the filter on deleted libraries to not show th...
by GitHub 19 Oct '15

19 Oct '15

Branch: refs/heads/release_15.10 Home: https://github.com/galaxyproject/galaxy Commit: 15a8c594bd8041c17512a719eab6185c6b478f19 https://github.com/galaxyproject/galaxy/commit/15a8c594bd8041c17512a719eab6… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-10-16 (Fri, 16 Oct 2015) Changed paths: M client/galaxy/scripts/mvc/library/library-librarylist-view.js M static/maps/mvc/library/library-librarylist-view.js.map M static/scripts/mvc/library/library-librarylist-view.js Log Message: ----------- fix the filter on deleted libraries to not show the public deleted libs by default Commit: 47ce939322111da71b914976170dd9ad41c0fe7d https://github.com/galaxyproject/galaxy/commit/47ce939322111da71b914976170d… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-10-16 (Fri, 16 Oct 2015) Changed paths: M client/galaxy/scripts/mvc/library/library-librarylist-view.js M static/maps/mvc/library/library-librarylist-view.js.map M static/scripts/mvc/library/library-librarylist-view.js Log Message: ----------- remove log Commit: b7dfeb4174183135f8ac7c858d6ce33ba69286c0 https://github.com/galaxyproject/galaxy/commit/b7dfeb4174183135f8ac7c858d6c… Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com> Date: 2015-10-19 (Mon, 19 Oct 2015) Changed paths: M client/galaxy/scripts/mvc/library/library-librarylist-view.js M static/maps/mvc/library/library-librarylist-view.js.map M static/scripts/mvc/library/library-librarylist-view.js Log Message: ----------- Merge pull request #934 from martenson/fix-showing-deleted-libs [15.10] fix the filter on search results to not show the public deleted libs Compare: https://github.com/galaxyproject/galaxy/compare/11d17b3e7b30...b7dfeb417418

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[galaxyproject/galaxy] c9294a: Fix syntax of error parameter of tryCatch.
by GitHub 19 Oct '15

19 Oct '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: c9294a6ec9270490d78b79fb3a615ed30b477650 https://github.com/galaxyproject/galaxy/commit/c9294a6ec9270490d78b79fb3a61… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2015-10-16 (Fri, 16 Oct 2015) Changed paths: M lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py Log Message: ----------- Fix syntax of error parameter of tryCatch. Commit: ca4a09b78c8db5fe5a6068362df91d91ae94b425 https://github.com/galaxyproject/galaxy/commit/ca4a09b78c8db5fe5a6068362df9… Author: John Chilton <jmchilton(a)gmail.com> Date: 2015-10-19 (Mon, 19 Oct 2015) Changed paths: M lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py Log Message: ----------- Merge pull request #929 from nsoranzo/R_install_fix Fix syntax of error parameter of tryCatch in setup_r_environment action. Compare: https://github.com/galaxyproject/galaxy/compare/8bd94c1fff10...ca4a09b78c8d

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[galaxyproject/galaxy] da9ebc: Run ./scripts/common_startup.sh inside docker when...
by GitHub 17 Oct '15

17 Oct '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: da9ebc17bb687fcc2156b76652f45914389c8da5 https://github.com/galaxyproject/galaxy/commit/da9ebc17bb687fcc2156b76652f4… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-10-16 (Fri, 16 Oct 2015) Changed paths: M run_tests.sh M test/docker/base/run_test_wrapper.sh Log Message: ----------- Run ./scripts/common_startup.sh inside docker when using `run_tests.sh --dockerize`. Requires a rebuild of galaxy/base-testing. Necessary for tests to run on #428 (and anything else once #428 is merged). Commit: 8bd94c1fff10b654c8e5ea139dcd60fa99516177 https://github.com/galaxyproject/galaxy/commit/8bd94c1fff10b654c8e5ea139dcd… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-10-17 (Sat, 17 Oct 2015) Changed paths: M run_tests.sh M test/docker/base/run_test_wrapper.sh Log Message: ----------- Merge pull request #936 from natefoo/dockerize-tests-setup common_startup.sh fixes for run_tests.sh --dockerize and wheels Compare: https://github.com/galaxyproject/galaxy/compare/ac16cb4923f4...8bd94c1fff10

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[galaxyproject/galaxy] d47579: Use a specific version of the testing-base docker ...
by GitHub 17 Oct '15

17 Oct '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: d475792d2453396d337596bd5153ff5fa7b76d20 https://github.com/galaxyproject/galaxy/commit/d475792d2453396d337596bd5153… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-10-16 (Fri, 16 Oct 2015) Changed paths: M run_tests.sh Log Message: ----------- Use a specific version of the testing-base docker image. Commit: ac16cb4923f4d7912de9027dd4e9887eef9b91ee https://github.com/galaxyproject/galaxy/commit/ac16cb4923f4d7912de9027dd4e9… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-10-17 (Sat, 17 Oct 2015) Changed paths: M run_tests.sh Log Message: ----------- Merge pull request #938 from natefoo/versioned-testing-docker Version the testing-base docker image Compare: https://github.com/galaxyproject/galaxy/compare/323167674963...ac16cb4923f4

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[galaxyproject/usegalaxy-playbook] ef0d22: Update Main and admin_users
by GitHub 15 Oct '15

15 Oct '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: ef0d226e6e04cdade0a59285370a09e013de9723 https://github.com/galaxyproject/usegalaxy-playbook/commit/ef0d226e6e04cdad… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-10-15 (Thu, 15 Oct 2015) Changed paths: M production/group_vars/all.yml M production/secret_vars/galaxyservers.yml Log Message: ----------- Update Main and admin_users

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[galaxyproject/galaxy] b07459: As usual, I forgot to update the version tag when ...
by GitHub 15 Oct '15

15 Oct '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: b074590efc52f92fdedc3825f5762d1dcb03a474 https://github.com/galaxyproject/galaxy/commit/b074590efc52f92fdedc3825f576… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-10-15 (Thu, 15 Oct 2015) Changed paths: M lib/galaxy/version.py Log Message: ----------- As usual, I forgot to update the version tag when creating the release_15.10 branch. Commit: 3231676749639f8019f058e84fec0c7fa9114e13 https://github.com/galaxyproject/galaxy/commit/3231676749639f8019f058e84fec… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-10-15 (Thu, 15 Oct 2015) Changed paths: M lib/galaxy/version.py Log Message: ----------- Merge pull request #923 from natefoo/dev Bump dev branch version to 16.01 Compare: https://github.com/galaxyproject/galaxy/compare/e540c2cc7781...323167674963

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[galaxyproject/galaxy] b6f378: remove test_map_over_two_collections_legacy as it ...
by GitHub 15 Oct '15

15 Oct '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: b6f3783acd03b4979448ba51395af8e1fc605d27 https://github.com/galaxyproject/galaxy/commit/b6f3783acd03b4979448ba51395a… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-10-15 (Thu, 15 Oct 2015) Changed paths: M test/api/test_tools.py Log Message: ----------- remove test_map_over_two_collections_legacy as it is obsolete Commit: e540c2cc7781c82d842103de1db9b1c38e7888a5 https://github.com/galaxyproject/galaxy/commit/e540c2cc7781c82d842103de1db9… Author: John Chilton <jmchilton(a)gmail.com> Date: 2015-10-15 (Thu, 15 Oct 2015) Changed paths: M test/api/test_tools.py Log Message: ----------- Merge pull request #924 from martenson/remove-legacy-test remove test_map_over_two_collections_legacy as it is obsolete Compare: https://github.com/galaxyproject/galaxy/compare/6c7ebdbbcb6b...e540c2cc7781

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[galaxyproject/usegalaxy-playbook] fa5668: Update Test and admin_users
by GitHub 15 Oct '15

15 Oct '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: fa5668b25e5ced931dea1062c1cf7b0689083244 https://github.com/galaxyproject/usegalaxy-playbook/commit/fa5668b25e5ced93… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-10-15 (Thu, 15 Oct 2015) Changed paths: M stage/group_vars/all.yml M stage/secret_vars/galaxyservers.yml Log Message: ----------- Update Test and admin_users

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[galaxyproject/galaxy] 8cb894: Fix data library test case
by GitHub 15 Oct '15

15 Oct '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 8cb894b34a162b4082a49b3c41df8e96dfedd04b https://github.com/galaxyproject/galaxy/commit/8cb894b34a162b4082a49b3c41df… Author: guerler <aysam.guerler(a)gmail.com> Date: 2015-10-12 (Mon, 12 Oct 2015) Changed paths: M test/api/test_tools.py Log Message: ----------- Fix data library test case Fix library data test case Commit: 6c7ebdbbcb6b9c93229d7586ddff133a03776271 https://github.com/galaxyproject/galaxy/commit/6c7ebdbbcb6b9c93229d7586ddff… Author: John Chilton <jmchilton(a)gmail.com> Date: 2015-10-15 (Thu, 15 Oct 2015) Changed paths: M test/api/test_tools.py Log Message: ----------- Merge pull request #898 from guerler/fix_library_test_000 Fix data library test case Compare: https://github.com/galaxyproject/galaxy/compare/296dab0588ba...6c7ebdbbcb6b

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