- galaxy-commits - lists.galaxyproject.org

[galaxyproject/ansible-pulsar]
by GitHub 01 Sep '15

01 Sep '15

Branch: refs/tags/0.4.1 Home: https://github.com/galaxyproject/ansible-pulsar

1 0

[galaxyproject/ansible-pulsar] 5c7730: Add pip installability.
by GitHub 01 Sep '15

01 Sep '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/ansible-pulsar Commit: 5c7730f6c61fdd15bbd1f3caf4d13479ecd11266 https://github.com/galaxyproject/ansible-pulsar/commit/5c7730f6c61fdd15bbd1… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-09-01 (Tue, 01 Sep 2015) Changed paths: M README.md M defaults/main.yml M tasks/main.yml Log Message: ----------- Add pip installability.

1 0

[galaxyproject/usegalaxy-playbook] 1e0191: Update galaxyprojectdotorg.pulsar to 0.4
by GitHub 01 Sep '15

01 Sep '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 1e0191231150412e2bdf1889bf70e60d67b4d481 https://github.com/galaxyproject/usegalaxy-playbook/commit/1e0191231150412e… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-09-01 (Tue, 01 Sep 2015) Changed paths: M roles/galaxyprojectdotorg.pulsar/README.md M roles/galaxyprojectdotorg.pulsar/defaults/main.yml M roles/galaxyprojectdotorg.pulsar/meta/.galaxy_install_info M roles/galaxyprojectdotorg.pulsar/tasks/main.yml A roles/galaxyprojectdotorg.pulsar/templates/app.yml.j2 M roles/galaxyprojectdotorg.pulsar/templates/server.ini.j2 Log Message: ----------- Update galaxyprojectdotorg.pulsar to 0.4

1 0

[galaxyproject/ansible-pulsar]
by GitHub 01 Sep '15

01 Sep '15

Branch: refs/tags/0.4 Home: https://github.com/galaxyproject/ansible-pulsar

1 0

[galaxyproject/ansible-pulsar] 511a68: Add support for app.yml
by GitHub 01 Sep '15

01 Sep '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/ansible-pulsar Commit: 511a682c6cf3d1ad0e2740c7b79b1e5ce79335c4 https://github.com/galaxyproject/ansible-pulsar/commit/511a682c6cf3d1ad0e27… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-09-01 (Tue, 01 Sep 2015) Changed paths: M README.md M tasks/main.yml A templates/app.yml.j2 M templates/server.ini.j2 Log Message: ----------- Add support for app.yml

1 0

[galaxyproject/galaxy] 041c94: Release notes for 15.07.
by GitHub 01 Sep '15

01 Sep '15

Branch: refs/heads/release_15.07 Home: https://github.com/galaxyproject/galaxy Commit: 041c94bf788bea0990401dab14e0ab717cec0c55 https://github.com/galaxyproject/galaxy/commit/041c94bf788bea0990401dab14e0… Author: John Chilton <jmchilton(a)gmail.com> Date: 2015-08-27 (Thu, 27 Aug 2015) Changed paths: A doc/source/releases/15.07.rst M doc/source/releases/15.07_announce.rst A doc/source/releases/15.10_announce.rst M doc/source/releases/index.rst M scripts/bootstrap_history.py Log Message: ----------- Release notes for 15.07. This includes a script to boot strap the notes for future releases, updated announcement page for 15.07, and new announcement page for 15.10. Commit: 4a05c07aa5cc8e386742bb638a6c44e839efc9bd https://github.com/galaxyproject/galaxy/commit/4a05c07aa5cc8e386742bb638a6c… Author: John Chilton <jmchilton(a)gmail.com> Date: 2015-08-27 (Thu, 27 Aug 2015) Changed paths: M doc/source/releases/15.07.rst M doc/source/releases/15.07_announce.rst A scripts/bootstrap_history_announce_template.rst Log Message: ----------- Fixup end of release items for release notes. Commit: 65f39b2eaf6b0c94b1044a92351c2b5799ca021a https://github.com/galaxyproject/galaxy/commit/65f39b2eaf6b0c94b1044a92351c… Author: John Chilton <jmchilton(a)gmail.com> Date: 2015-08-27 (Thu, 27 Aug 2015) Changed paths: M doc/source/releases/15.07_announce.rst Log Message: ----------- Typo noticed by @martenson. Commit: a460ebd7d6b6132fe00238e834dcff0efb449ad8 https://github.com/galaxyproject/galaxy/commit/a460ebd7d6b6132fe00238e834dc… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-08-27 (Thu, 27 Aug 2015) Changed paths: M doc/source/releases/15.07.rst Log Message: ----------- Fix for explicit markup ending without a blank line Commit: 51534edc63bb7758d4fb4a7aaec13df7a1e5e8eb https://github.com/galaxyproject/galaxy/commit/51534edc63bb7758d4fb4a7aaec1… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-08-27 (Thu, 27 Aug 2015) Changed paths: M doc/source/releases/15.07_announce.rst Log Message: ----------- Deprecation notice for cloudlaunch Commit: 96840a3c57354690b9287e49dd2ef3400932b52e https://github.com/galaxyproject/galaxy/commit/96840a3c57354690b9287e49dd2e… Author: John Chilton <jmchilton(a)gmail.com> Date: 2015-08-27 (Thu, 27 Aug 2015) Changed paths: M doc/source/releases/15.07.rst M doc/source/releases/15.07_announce.rst Log Message: ----------- Merge pull request #9 from dannon/rn Deprecation notice for cloudlaunch. Commit: 82794e7ee7a8a6793438bf2021079515445bb873 https://github.com/galaxyproject/galaxy/commit/82794e7ee7a8a6793438bf202107… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-08-27 (Thu, 27 Aug 2015) Changed paths: M doc/source/releases/15.07_announce.rst Log Message: ----------- Fix cloudlaunch link. Commit: 36d262d7c695ba06c32f5c495a0a3ceb62d57731 https://github.com/galaxyproject/galaxy/commit/36d262d7c695ba06c32f5c495a0a… Author: John Chilton <jmchilton(a)gmail.com> Date: 2015-08-27 (Thu, 27 Aug 2015) Changed paths: M doc/source/releases/15.07_announce.rst Log Message: ----------- Merge pull request #10 from dannon/rn Fix cloudlaunch link. Commit: f4605937e3bb1e0e993c66ac86deabff374034c4 https://github.com/galaxyproject/galaxy/commit/f4605937e3bb1e0e993c66ac86de… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-09-01 (Tue, 01 Sep 2015) Changed paths: A doc/source/releases/15.07.rst M doc/source/releases/15.07_announce.rst A doc/source/releases/15.10_announce.rst M doc/source/releases/index.rst M scripts/bootstrap_history.py A scripts/bootstrap_history_announce_template.rst Log Message: ----------- Merge pull request #642 from jmchilton/rn [15.07] Release notes for 15.07. Compare: https://github.com/galaxyproject/galaxy/compare/3653bf5e37b1...f4605937e3bb

1 0

[galaxyproject/galaxy] 4dd630: Fix version parsing in tool form
by GitHub 31 Aug '15

31 Aug '15

Branch: refs/heads/release_15.07 Home: https://github.com/galaxyproject/galaxy Commit: 4dd6304f055706e38176823a4166c6536618a042 https://github.com/galaxyproject/galaxy/commit/4dd6304f055706e38176823a4166… Author: guerler <aysam.guerler(a)gmail.com> Date: 2015-08-31 (Mon, 31 Aug 2015) Changed paths: M client/galaxy/scripts/mvc/tools/tools-form.js M static/maps/mvc/tools/tools-form.js.map M static/scripts/mvc/tools/tools-form.js Log Message: ----------- Fix version parsing in tool form Commit: 3653bf5e37b13ea17cecd321fdbe9ce4fedcfbb8 https://github.com/galaxyproject/galaxy/commit/3653bf5e37b13ea17cecd321fdbe… Author: Björn Grüning <bjoern(a)gruenings.eu> Date: 2015-08-31 (Mon, 31 Aug 2015) Changed paths: M client/galaxy/scripts/mvc/tools/tools-form.js M static/maps/mvc/tools/tools-form.js.map M static/scripts/mvc/tools/tools-form.js Log Message: ----------- Merge pull request #677 from guerler/fix_version_002 [15.07] Fix version handling in tool form Compare: https://github.com/galaxyproject/galaxy/compare/525188d2a871...3653bf5e37b1

1 0

[galaxyproject/infrastructure-playbook] 89b873: Update common_roles version
by GitHub 31 Aug '15

31 Aug '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 89b87312737d0756b16532c7cf140d8039b1747c https://github.com/galaxyproject/infrastructure-playbook/commit/89b87312737… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-08-31 (Mon, 31 Aug 2015) Changed paths: M common_roles Log Message: ----------- Update common_roles version Commit: 80a4025a60801b40dc46239ca16b39ec3cd756d0 https://github.com/galaxyproject/infrastructure-playbook/commit/80a4025a608… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-08-31 (Mon, 31 Aug 2015) Changed paths: A galaxyenv/host_vars/n2.galaxyproject.org.yml M galaxyenv/inventory M galaxyenv/secret_host_vars/default.yml A galaxyenv/secret_host_vars/n2.galaxyproject.org.yml M playbook.yml Log Message: ----------- Set up n2.galaxyproject.org for Jenkins. Compare: https://github.com/galaxyproject/infrastructure-playbook/compare/e997536619…

1 0

[galaxyproject/galaxy] aa7968: Changed class naming to reflect use
by GitHub 31 Aug '15

31 Aug '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: aa7968aa9d13ab5de9fcebd427e5eca356cc1de4 https://github.com/galaxyproject/galaxy/commit/aa7968aa9d13ab5de9fcebd427e5… Author: Airistotal <danieltos.bouchard(a)gmail.com> Date: 2015-08-31 (Mon, 31 Aug 2015) Changed paths: M client/galaxy/style/less/reports.less M static/style/blue/base.css M static/style/blue/reports.css M templates/webapps/reports/job_info.mako M templates/webapps/reports/jobs_errors_per_tool.mako M templates/webapps/reports/jobs_per_month_all.mako M templates/webapps/reports/jobs_per_month_in_error.mako M templates/webapps/reports/jobs_per_tool.mako M templates/webapps/reports/jobs_per_user.mako M templates/webapps/reports/jobs_specified_month_all.mako M templates/webapps/reports/jobs_specified_month_in_error.mako M templates/webapps/reports/jobs_tool_per_month.mako M templates/webapps/reports/jobs_user_per_month.mako M templates/webapps/reports/registered_users.mako M templates/webapps/reports/registered_users_per_month.mako M templates/webapps/reports/registered_users_specified_date.mako M templates/webapps/reports/registered_users_specified_month.mako M templates/webapps/reports/requests_per_month_all.mako M templates/webapps/reports/requests_per_user.mako M templates/webapps/reports/requests_user_per_month.mako M templates/webapps/reports/run_stats.mako M templates/webapps/reports/system.mako M templates/webapps/reports/users_last_access_date.mako M templates/webapps/reports/users_user_disk_usage.mako M templates/webapps/reports/workflows_per_month_all.mako M templates/webapps/reports/workflows_per_user.mako M templates/webapps/reports/workflows_per_workflow.mako M templates/webapps/reports/workflows_user_per_month.mako Log Message: ----------- Changed class naming to reflect use Commit: 0a1617024c7923c12531fa9e18da3494833a6f1f https://github.com/galaxyproject/galaxy/commit/0a1617024c7923c12531fa9e18da… Author: Nitesh Turaga <nitesh.turaga(a)gmail.com> Date: 2015-08-31 (Mon, 31 Aug 2015) Changed paths: M client/galaxy/style/less/reports.less M static/style/blue/base.css M static/style/blue/reports.css M templates/webapps/reports/job_info.mako M templates/webapps/reports/jobs_errors_per_tool.mako M templates/webapps/reports/jobs_per_month_all.mako M templates/webapps/reports/jobs_per_month_in_error.mako M templates/webapps/reports/jobs_per_tool.mako M templates/webapps/reports/jobs_per_user.mako M templates/webapps/reports/jobs_specified_month_all.mako M templates/webapps/reports/jobs_specified_month_in_error.mako M templates/webapps/reports/jobs_tool_per_month.mako M templates/webapps/reports/jobs_user_per_month.mako M templates/webapps/reports/registered_users.mako M templates/webapps/reports/registered_users_per_month.mako M templates/webapps/reports/registered_users_specified_date.mako M templates/webapps/reports/registered_users_specified_month.mako M templates/webapps/reports/requests_per_month_all.mako M templates/webapps/reports/requests_per_user.mako M templates/webapps/reports/requests_user_per_month.mako M templates/webapps/reports/run_stats.mako M templates/webapps/reports/system.mako M templates/webapps/reports/users_last_access_date.mako M templates/webapps/reports/users_user_disk_usage.mako M templates/webapps/reports/workflows_per_month_all.mako M templates/webapps/reports/workflows_per_user.mako M templates/webapps/reports/workflows_per_workflow.mako M templates/webapps/reports/workflows_user_per_month.mako Log Message: ----------- Merge pull request #675 from Airistotal/dev Changed class naming to reflect use Compare: https://github.com/galaxyproject/galaxy/compare/f61f696724a0...0a1617024c79

1 0

[galaxyproject/galaxy] 469d8b: Fixed change in class overlap
by GitHub 31 Aug '15

31 Aug '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 469d8b463e4711770925f4152c95769b7c1d04dc https://github.com/galaxyproject/galaxy/commit/469d8b463e4711770925f4152c95… Author: Airistotal <danieltos.bouchard(a)gmail.com> Date: 2015-08-28 (Fri, 28 Aug 2015) Changed paths: M client/galaxy/style/less/reports.less M static/style/blue/base.css M static/style/blue/reports.css M templates/webapps/reports/jobs_errors_per_tool.mako M templates/webapps/reports/jobs_per_month_all.mako M templates/webapps/reports/jobs_per_month_in_error.mako M templates/webapps/reports/jobs_per_tool.mako M templates/webapps/reports/jobs_per_user.mako M templates/webapps/reports/jobs_specified_month_all.mako M templates/webapps/reports/jobs_specified_month_in_error.mako M templates/webapps/reports/jobs_tool_per_month.mako M templates/webapps/reports/jobs_user_per_month.mako M templates/webapps/reports/registered_users.mako M templates/webapps/reports/registered_users_per_month.mako M templates/webapps/reports/registered_users_specified_date.mako M templates/webapps/reports/registered_users_specified_month.mako M templates/webapps/reports/requests_per_month_all.mako M templates/webapps/reports/requests_per_user.mako M templates/webapps/reports/requests_user_per_month.mako M templates/webapps/reports/workflows_per_month_all.mako M templates/webapps/reports/workflows_per_user.mako M templates/webapps/reports/workflows_per_workflow.mako M templates/webapps/reports/workflows_user_per_month.mako Log Message: ----------- Fixed change in class overlap Commit: ec8cba20398dcfe0fdd7a46ad93cf78fadc310ec https://github.com/galaxyproject/galaxy/commit/ec8cba20398dcfe0fdd7a46ad93c… Author: Airistotal <danieltos.bouchard(a)gmail.com> Date: 2015-08-28 (Fri, 28 Aug 2015) Changed paths: M .ci/flake8_blacklist.txt M .ci/flake8_wrapper.sh M client/galaxy/style/less/reports.less A doc/source/api/quickstart.rst M doc/source/api_doc.rst A doc/source/dev/faq.rst A doc/source/dev/index.rst M doc/source/index.rst M doc/source/ts_api_doc.rst M lib/galaxy/jobs/actions/post.py M lib/galaxy/managers/base.py M lib/galaxy/managers/datasets.py M lib/galaxy/managers/rbac_secured.py M lib/galaxy/model/__init__.py M lib/galaxy/tools/__init__.py M lib/galaxy/tools/data_manager/manager.py M lib/galaxy/util/xml_macros.py M lib/galaxy/web/framework/base.py M lib/galaxy/webapps/galaxy/api/lda_datasets.py M lib/galaxy/webapps/galaxy/api/tool_shed_repositories.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py M lib/galaxy/webapps/galaxy/controllers/user.py M lib/galaxy/webapps/reports/buildapp.py M lib/galaxy/webapps/tool_shed/buildapp.py M lib/tool_shed/galaxy_install/repair_repository_manager.py M lib/tool_shed/metadata/metadata_generator.py M lib/tool_shed/util/shed_util_common.py M test/base/asserts/__init__.py M test/base/interactor.py M test/base/twilltestcase.py M test/casperjs/casperjs_runner.py M test/casperjs/server_env.py M test/install_and_test_tool_shed_repositories/base/twilltestcase.py M test/install_and_test_tool_shed_repositories/base/util.py M test/install_and_test_tool_shed_repositories/functional/test_install_repositories.py M test/install_and_test_tool_shed_repositories/repositories_with_tools/functional_tests.py M test/install_and_test_tool_shed_repositories/tool_dependency_definitions/functional_tests.py M test/qunit/README.txt M test/qunit/package.json M test/unit/managers/test_DatasetManager.py M test/unit/tools/test_tool_loader.py Log Message: ----------- Merge branch 'dev' of https://github.com/galaxyproject/galaxy into dev Conflicts: client/galaxy/style/less/reports.less static/style/blue/base.css static/style/blue/reports.css Commit: f61f696724a0b264a8706d6bf682fa09c178bc5e https://github.com/galaxyproject/galaxy/commit/f61f696724a0b264a8706d6bf682… Author: Nitesh Turaga <nitesh.turaga(a)gmail.com> Date: 2015-08-31 (Mon, 31 Aug 2015) Changed paths: M client/galaxy/style/less/reports.less M static/style/blue/base.css M static/style/blue/reports.css M templates/webapps/reports/jobs_errors_per_tool.mako M templates/webapps/reports/jobs_per_month_all.mako M templates/webapps/reports/jobs_per_month_in_error.mako M templates/webapps/reports/jobs_per_tool.mako M templates/webapps/reports/jobs_per_user.mako M templates/webapps/reports/jobs_specified_month_all.mako M templates/webapps/reports/jobs_specified_month_in_error.mako M templates/webapps/reports/jobs_tool_per_month.mako M templates/webapps/reports/jobs_user_per_month.mako M templates/webapps/reports/registered_users.mako M templates/webapps/reports/registered_users_per_month.mako M templates/webapps/reports/registered_users_specified_date.mako M templates/webapps/reports/registered_users_specified_month.mako M templates/webapps/reports/requests_per_month_all.mako M templates/webapps/reports/requests_per_user.mako M templates/webapps/reports/requests_user_per_month.mako M templates/webapps/reports/workflows_per_month_all.mako M templates/webapps/reports/workflows_per_user.mako M templates/webapps/reports/workflows_per_workflow.mako M templates/webapps/reports/workflows_user_per_month.mako Log Message: ----------- Merge pull request #669 from Airistotal/dev Fix centering bug in firefox Compare: https://github.com/galaxyproject/galaxy/compare/d4af323d35e4...f61f696724a0

1 0