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- 15302 discussions
4 new commits in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/60f4f8f901d1/
Changeset: 60f4f8f901d1
Branch: tool_shed_test_fix-DB_initialization
User: JenCabral
Date: 2015-02-06 16:51:03+00:00
Summary: Created new branch tool_shed_test_fix-DB_initialization
Affected #: 0 files
https://bitbucket.org/galaxy/galaxy-central/commits/b5276a73a8e3/
Changeset: b5276a73a8e3
Branch: tool_shed_test_fix-DB_initialization
User: JenCabral
Date: 2015-02-06 16:59:53+00:00
Summary: checks to see if directory for database exists if not creates the directory
Affected #: 2 files
diff -r 60f4f8f901d1cb5ca3bbe012839dae404e122de4 -r b5276a73a8e3b2ef1498d4eddf125f5310ab2a9f test/install_and_test_tool_shed_repositories/repositories_with_tools/functional_tests.py
--- a/test/install_and_test_tool_shed_repositories/repositories_with_tools/functional_tests.py
+++ b/test/install_and_test_tool_shed_repositories/repositories_with_tools/functional_tests.py
@@ -407,6 +407,8 @@
else:
tempdir = tempfile.mkdtemp( dir=galaxy_test_tmp_dir )
galaxy_db_path = os.path.join( tempdir, 'database' )
+ if not os.path.exists(galaxy_db_path):
+ os.makedirs(galaxy_db_path)
# Configure the paths Galaxy needs to install and test tools.
galaxy_file_path = os.path.join( galaxy_db_path, 'files' )
galaxy_tempfiles = tempfile.mkdtemp( dir=galaxy_test_tmp_dir )
diff -r 60f4f8f901d1cb5ca3bbe012839dae404e122de4 -r b5276a73a8e3b2ef1498d4eddf125f5310ab2a9f test/install_and_test_tool_shed_repositories/tool_dependency_definitions/functional_tests.py
--- a/test/install_and_test_tool_shed_repositories/tool_dependency_definitions/functional_tests.py
+++ b/test/install_and_test_tool_shed_repositories/tool_dependency_definitions/functional_tests.py
@@ -255,6 +255,8 @@
else:
tempdir = tempfile.mkdtemp( dir=galaxy_test_tmp_dir )
galaxy_db_path = os.path.join( tempdir, 'database' )
+ if not os.path.exists(galaxy_db_path):
+ os.makedirs(galaxy_db_path)
# Configure the paths Galaxy needs to install and test tools.
galaxy_file_path = os.path.join( galaxy_db_path, 'files' )
galaxy_tempfiles = tempfile.mkdtemp( dir=galaxy_test_tmp_dir )
https://bitbucket.org/galaxy/galaxy-central/commits/9932bce250bc/
Changeset: 9932bce250bc
Branch: tool_shed_test_fix-DB_initialization
User: JenCabral
Date: 2015-02-06 17:05:04+00:00
Summary: adding a comment and moving out of else statement
Affected #: 2 files
diff -r b5276a73a8e3b2ef1498d4eddf125f5310ab2a9f -r 9932bce250bce15135ea73d9bfd61fa353f18b6a test/install_and_test_tool_shed_repositories/repositories_with_tools/functional_tests.py
--- a/test/install_and_test_tool_shed_repositories/repositories_with_tools/functional_tests.py
+++ b/test/install_and_test_tool_shed_repositories/repositories_with_tools/functional_tests.py
@@ -407,8 +407,9 @@
else:
tempdir = tempfile.mkdtemp( dir=galaxy_test_tmp_dir )
galaxy_db_path = os.path.join( tempdir, 'database' )
- if not os.path.exists(galaxy_db_path):
- os.makedirs(galaxy_db_path)
+ # Checks if galaxy_db_path exists, if not create it.
+ if not os.path.exists(galaxy_db_path):
+ os.makedirs(galaxy_db_path)
# Configure the paths Galaxy needs to install and test tools.
galaxy_file_path = os.path.join( galaxy_db_path, 'files' )
galaxy_tempfiles = tempfile.mkdtemp( dir=galaxy_test_tmp_dir )
diff -r b5276a73a8e3b2ef1498d4eddf125f5310ab2a9f -r 9932bce250bce15135ea73d9bfd61fa353f18b6a test/install_and_test_tool_shed_repositories/tool_dependency_definitions/functional_tests.py
--- a/test/install_and_test_tool_shed_repositories/tool_dependency_definitions/functional_tests.py
+++ b/test/install_and_test_tool_shed_repositories/tool_dependency_definitions/functional_tests.py
@@ -255,8 +255,9 @@
else:
tempdir = tempfile.mkdtemp( dir=galaxy_test_tmp_dir )
galaxy_db_path = os.path.join( tempdir, 'database' )
- if not os.path.exists(galaxy_db_path):
- os.makedirs(galaxy_db_path)
+ # Checks that galaxy_db_path exists and if not, create it.
+ if not os.path.exists(galaxy_db_path):
+ os.makedirs(galaxy_db_path)
# Configure the paths Galaxy needs to install and test tools.
galaxy_file_path = os.path.join( galaxy_db_path, 'files' )
galaxy_tempfiles = tempfile.mkdtemp( dir=galaxy_test_tmp_dir )
https://bitbucket.org/galaxy/galaxy-central/commits/527b11f07d81/
Changeset: 527b11f07d81
User: jmchilton
Date: 2015-02-07 02:33:49+00:00
Summary: Merged in JenCabral/galaxy-central/tool_shed_test_fix-DB_initialization (pull request #662)
Fix tool shed tests - create database directory
Affected #: 2 files
diff -r 3dd2ec31034db4febf1954c295b81604cca62169 -r 527b11f07d8107298c87293eb04469f2743e229e test/install_and_test_tool_shed_repositories/repositories_with_tools/functional_tests.py
--- a/test/install_and_test_tool_shed_repositories/repositories_with_tools/functional_tests.py
+++ b/test/install_and_test_tool_shed_repositories/repositories_with_tools/functional_tests.py
@@ -407,6 +407,9 @@
else:
tempdir = tempfile.mkdtemp( dir=galaxy_test_tmp_dir )
galaxy_db_path = os.path.join( tempdir, 'database' )
+ # Checks if galaxy_db_path exists, if not create it.
+ if not os.path.exists(galaxy_db_path):
+ os.makedirs(galaxy_db_path)
# Configure the paths Galaxy needs to install and test tools.
galaxy_file_path = os.path.join( galaxy_db_path, 'files' )
galaxy_tempfiles = tempfile.mkdtemp( dir=galaxy_test_tmp_dir )
diff -r 3dd2ec31034db4febf1954c295b81604cca62169 -r 527b11f07d8107298c87293eb04469f2743e229e test/install_and_test_tool_shed_repositories/tool_dependency_definitions/functional_tests.py
--- a/test/install_and_test_tool_shed_repositories/tool_dependency_definitions/functional_tests.py
+++ b/test/install_and_test_tool_shed_repositories/tool_dependency_definitions/functional_tests.py
@@ -255,6 +255,9 @@
else:
tempdir = tempfile.mkdtemp( dir=galaxy_test_tmp_dir )
galaxy_db_path = os.path.join( tempdir, 'database' )
+ # Checks that galaxy_db_path exists and if not, create it.
+ if not os.path.exists(galaxy_db_path):
+ os.makedirs(galaxy_db_path)
# Configure the paths Galaxy needs to install and test tools.
galaxy_file_path = os.path.join( galaxy_db_path, 'files' )
galaxy_tempfiles = tempfile.mkdtemp( dir=galaxy_test_tmp_dir )
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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07 Feb '15
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/3dd2ec31034d/
Changeset: 3dd2ec31034d
User: guerler
Date: 2015-02-07 01:49:58+00:00
Summary: Ui: Repack styles
Affected #: 1 file
diff -r 9e945d2a94112f15b6819b206f26735d92e2681d -r 3dd2ec31034db4febf1954c295b81604cca62169 static/style/blue/base.css
--- a/static/style/blue/base.css
+++ b/static/style/blue/base.css
@@ -41,7 +41,7 @@
body{font-family:"Lucida Grande",verdana,arial,helvetica,sans-serif;font-size:12px;line-height:1.428571429;color:#333;background-color:#fff}
input,button,select,textarea{font-family:inherit;font-size:inherit;line-height:inherit}
button,input,select[multiple],textarea{background-image:none}
-a{color:#5f6990;text-decoration:none}a:hover,a:focus{color:#404862;text-decoration:underline}
+a{color:#303030;text-decoration:none}a:hover,a:focus{color:#0a0a0a;text-decoration:underline}
a:focus{outline:thin dotted #333;outline:5px auto -webkit-focus-ring-color;outline-offset:-2px}
img{vertical-align:middle}
.img-responsive{display:block;max-width:100%;height:auto}
@@ -114,13 +114,13 @@
.col-xs-12{width:100%}
@media (min-width:768px){.container{max-width:750px} .col-sm-1,.col-sm-2,.col-sm-3,.col-sm-4,.col-sm-5,.col-sm-6,.col-sm-7,.col-sm-8,.col-sm-9,.col-sm-10,.col-sm-11{float:left} .col-sm-1{width:8.333333333333332%} .col-sm-2{width:16.666666666666664%} .col-sm-3{width:25%} .col-sm-4{width:33.33333333333333%} .col-sm-5{width:41.66666666666667%} .col-sm-6{width:50%} .col-sm-7{width:58.333333333333336%} .col-sm-8{width:66.66666666666666%} .col-sm-9{width:75%} .col-sm-10{width:83.33333333333334%} .col-sm-11{width:91.66666666666666%} .col-sm-12{width:100%} .col-sm-push-1{left:8.333333333333332%} .col-sm-push-2{left:16.666666666666664%} .col-sm-push-3{left:25%} .col-sm-push-4{left:33.33333333333333%} .col-sm-push-5{left:41.66666666666667%} .col-sm-push-6{left:50%} .col-sm-push-7{left:58.333333333333336%} .col-sm-push-8{left:66.66666666666666%} .col-sm-push-9{left:75%} .col-sm-push-10{left:83.33333333333334%} .col-sm-push-11{left:91.66666666666666%} .col-sm-pull-1{right:8.333333333333332%} .col-sm-pull-2{right:16.666666666666664%} .col-sm-pull-3{right:25%} .col-sm-pull-4{right:33.33333333333333%} .col-sm-pull-5{right:41.66666666666667%} .col-sm-pull-6{right:50%} .col-sm-pull-7{right:58.333333333333336%} .col-sm-pull-8{right:66.66666666666666%} .col-sm-pull-9{right:75%} .col-sm-pull-10{right:83.33333333333334%} .col-sm-pull-11{right:91.66666666666666%} .col-sm-offset-1{margin-left:8.333333333333332%} .col-sm-offset-2{margin-left:16.666666666666664%} .col-sm-offset-3{margin-left:25%} .col-sm-offset-4{margin-left:33.33333333333333%} .col-sm-offset-5{margin-left:41.66666666666667%} .col-sm-offset-6{margin-left:50%} .col-sm-offset-7{margin-left:58.333333333333336%} .col-sm-offset-8{margin-left:66.66666666666666%} .col-sm-offset-9{margin-left:75%} .col-sm-offset-10{margin-left:83.33333333333334%} .col-sm-offset-11{margin-left:91.66666666666666%}}@media (min-width:992px){.container{max-width:970px} .col-md-1,.col-md-2,.col-md-3,.col-md-4,.col-md-5,.col-md-6,.col-md-7,.col-md-8,.col-md-9,.col-md-10,.col-md-11{float:left} .col-md-1{width:8.333333333333332%} .col-md-2{width:16.666666666666664%} .col-md-3{width:25%} .col-md-4{width:33.33333333333333%} .col-md-5{width:41.66666666666667%} .col-md-6{width:50%} .col-md-7{width:58.333333333333336%} .col-md-8{width:66.66666666666666%} .col-md-9{width:75%} .col-md-10{width:83.33333333333334%} .col-md-11{width:91.66666666666666%} .col-md-12{width:100%} .col-md-push-0{left:auto} .col-md-push-1{left:8.333333333333332%} .col-md-push-2{left:16.666666666666664%} .col-md-push-3{left:25%} .col-md-push-4{left:33.33333333333333%} .col-md-push-5{left:41.66666666666667%} .col-md-push-6{left:50%} .col-md-push-7{left:58.333333333333336%} .col-md-push-8{left:66.66666666666666%} .col-md-push-9{left:75%} .col-md-push-10{left:83.33333333333334%} .col-md-push-11{left:91.66666666666666%} .col-md-pull-0{right:auto} .col-md-pull-1{right:8.333333333333332%} .col-md-pull-2{right:16.666666666666664%} .col-md-pull-3{right:25%} .col-md-pull-4{right:33.33333333333333%} .col-md-pull-5{right:41.66666666666667%} .col-md-pull-6{right:50%} .col-md-pull-7{right:58.333333333333336%} .col-md-pull-8{right:66.66666666666666%} .col-md-pull-9{right:75%} .col-md-pull-10{right:83.33333333333334%} .col-md-pull-11{right:91.66666666666666%} .col-md-offset-0{margin-left:0} .col-md-offset-1{margin-left:8.333333333333332%} .col-md-offset-2{margin-left:16.666666666666664%} .col-md-offset-3{margin-left:25%} .col-md-offset-4{margin-left:33.33333333333333%} .col-md-offset-5{margin-left:41.66666666666667%} .col-md-offset-6{margin-left:50%} .col-md-offset-7{margin-left:58.333333333333336%} .col-md-offset-8{margin-left:66.66666666666666%} .col-md-offset-9{margin-left:75%} .col-md-offset-10{margin-left:83.33333333333334%} .col-md-offset-11{margin-left:91.66666666666666%}}@media (min-width:1200px){.container{max-width:1170px} .col-lg-1,.col-lg-2,.col-lg-3,.col-lg-4,.col-lg-5,.col-lg-6,.col-lg-7,.col-lg-8,.col-lg-9,.col-lg-10,.col-lg-11{float:left} .col-lg-1{width:8.333333333333332%} .col-lg-2{width:16.666666666666664%} .col-lg-3{width:25%} .col-lg-4{width:33.33333333333333%} .col-lg-5{width:41.66666666666667%} .col-lg-6{width:50%} .col-lg-7{width:58.333333333333336%} .col-lg-8{width:66.66666666666666%} .col-lg-9{width:75%} .col-lg-10{width:83.33333333333334%} .col-lg-11{width:91.66666666666666%} .col-lg-12{width:100%} .col-lg-push-0{left:auto} .col-lg-push-1{left:8.333333333333332%} .col-lg-push-2{left:16.666666666666664%} .col-lg-push-3{left:25%} .col-lg-push-4{left:33.33333333333333%} .col-lg-push-5{left:41.66666666666667%} .col-lg-push-6{left:50%} .col-lg-push-7{left:58.333333333333336%} .col-lg-push-8{left:66.66666666666666%} .col-lg-push-9{left:75%} .col-lg-push-10{left:83.33333333333334%} .col-lg-push-11{left:91.66666666666666%} .col-lg-pull-0{right:auto} .col-lg-pull-1{right:8.333333333333332%} .col-lg-pull-2{right:16.666666666666664%} .col-lg-pull-3{right:25%} .col-lg-pull-4{right:33.33333333333333%} .col-lg-pull-5{right:41.66666666666667%} .col-lg-pull-6{right:50%} .col-lg-pull-7{right:58.333333333333336%} .col-lg-pull-8{right:66.66666666666666%} .col-lg-pull-9{right:75%} .col-lg-pull-10{right:83.33333333333334%} .col-lg-pull-11{right:91.66666666666666%} .col-lg-offset-0{margin-left:0} .col-lg-offset-1{margin-left:8.333333333333332%} .col-lg-offset-2{margin-left:16.666666666666664%} .col-lg-offset-3{margin-left:25%} .col-lg-offset-4{margin-left:33.33333333333333%} .col-lg-offset-5{margin-left:41.66666666666667%} .col-lg-offset-6{margin-left:50%} .col-lg-offset-7{margin-left:58.333333333333336%} .col-lg-offset-8{margin-left:66.66666666666666%} .col-lg-offset-9{margin-left:75%} .col-lg-offset-10{margin-left:83.33333333333334%} .col-lg-offset-11{margin-left:91.66666666666666%}}table{max-width:100%;background-color:transparent}
th{text-align:left}
-.table{width:100%;margin-bottom:17px}.table thead>tr>th,.table tbody>tr>th,.table tfoot>tr>th,.table thead>tr>td,.table tbody>tr>td,.table tfoot>tr>td{padding:8px;line-height:1.428571429;vertical-align:top;border-top:1px solid #bfbfbf}
-.table thead>tr>th{vertical-align:bottom;border-bottom:2px solid #bfbfbf}
+.table{width:100%;margin-bottom:17px}.table thead>tr>th,.table tbody>tr>th,.table tfoot>tr>th,.table thead>tr>td,.table tbody>tr>td,.table tfoot>tr>td{padding:8px;line-height:1.428571429;vertical-align:top;border-top:1px solid #d6b161}
+.table thead>tr>th{vertical-align:bottom;border-bottom:2px solid #d6b161}
.table caption+thead tr:first-child th,.table colgroup+thead tr:first-child th,.table thead:first-child tr:first-child th,.table caption+thead tr:first-child td,.table colgroup+thead tr:first-child td,.table thead:first-child tr:first-child td{border-top:0}
-.table tbody+tbody{border-top:2px solid #bfbfbf}
+.table tbody+tbody{border-top:2px solid #d6b161}
.table .table{background-color:#fff}
.table-condensed thead>tr>th,.table-condensed tbody>tr>th,.table-condensed tfoot>tr>th,.table-condensed thead>tr>td,.table-condensed tbody>tr>td,.table-condensed tfoot>tr>td{padding:5px}
-.table-bordered{border:1px solid #bfbfbf}.table-bordered>thead>tr>th,.table-bordered>tbody>tr>th,.table-bordered>tfoot>tr>th,.table-bordered>thead>tr>td,.table-bordered>tbody>tr>td,.table-bordered>tfoot>tr>td{border:1px solid #bfbfbf}
+.table-bordered{border:1px solid #d6b161}.table-bordered>thead>tr>th,.table-bordered>tbody>tr>th,.table-bordered>tfoot>tr>th,.table-bordered>thead>tr>td,.table-bordered>tbody>tr>td,.table-bordered>tfoot>tr>td{border:1px solid #d6b161}
.table-bordered>thead>tr>th,.table-bordered>thead>tr>td{border-bottom-width:2px}
.table-striped>tbody>tr:nth-child(odd)>td,.table-striped>tbody>tr:nth-child(odd)>th{background-color:#f9f9f9}
.table-hover>tbody>tr:hover>td,.table-hover>tbody>tr:hover>th{background-color:#f5f5f5}
@@ -133,7 +133,7 @@
.table-hover>tbody>tr>td.danger:hover,.table-hover>tbody>tr>th.danger:hover,.table-hover>tbody>tr.danger:hover>td,.table-hover>tbody>tr.danger:hover>th{background-color:#f7b0ae;border-color:#c61913}
.table>thead>tr>td.warning,.table>tbody>tr>td.warning,.table>tfoot>tr>td.warning,.table>thead>tr>th.warning,.table>tbody>tr>th.warning,.table>tfoot>tr>th.warning,.table>thead>tr.warning>td,.table>tbody>tr.warning>td,.table>tfoot>tr.warning>td,.table>thead>tr.warning>th,.table>tbody>tr.warning>th,.table>tfoot>tr.warning>th{background-color:#fce1ba;border-color:#e28709}
.table-hover>tbody>tr>td.warning:hover,.table-hover>tbody>tr>th.warning:hover,.table-hover>tbody>tr.warning:hover>td,.table-hover>tbody>tr.warning:hover>th{background-color:#fbd6a2;border-color:#c97908}
-@media (max-width:768px){.table-responsive{width:100%;margin-bottom:15px;overflow-y:hidden;overflow-x:scroll;-ms-overflow-style:-ms-autohiding-scrollbar;border:1px solid #bfbfbf;-webkit-overflow-scrolling:touch}.table-responsive>.table{margin-bottom:0;background-color:#fff}.table-responsive>.table>thead>tr>th,.table-responsive>.table>tbody>tr>th,.table-responsive>.table>tfoot>tr>th,.table-responsive>.table>thead>tr>td,.table-responsive>.table>tbody>tr>td,.table-responsive>.table>tfoot>tr>td{white-space:nowrap} .table-responsive>.table-bordered{border:0}.table-responsive>.table-bordered>thead>tr>th:first-child,.table-responsive>.table-bordered>tbody>tr>th:first-child,.table-responsive>.table-bordered>tfoot>tr>th:first-child,.table-responsive>.table-bordered>thead>tr>td:first-child,.table-responsive>.table-bordered>tbody>tr>td:first-child,.table-responsive>.table-bordered>tfoot>tr>td:first-child{border-left:0} .table-responsive>.table-bordered>thead>tr>th:last-child,.table-responsive>.table-bordered>tbody>tr>th:last-child,.table-responsive>.table-bordered>tfoot>tr>th:last-child,.table-responsive>.table-bordered>thead>tr>td:last-child,.table-responsive>.table-bordered>tbody>tr>td:last-child,.table-responsive>.table-bordered>tfoot>tr>td:last-child{border-right:0} .table-responsive>.table-bordered>thead>tr:last-child>th,.table-responsive>.table-bordered>tbody>tr:last-child>th,.table-responsive>.table-bordered>tfoot>tr:last-child>th,.table-responsive>.table-bordered>thead>tr:last-child>td,.table-responsive>.table-bordered>tbody>tr:last-child>td,.table-responsive>.table-bordered>tfoot>tr:last-child>td{border-bottom:0}}fieldset{padding:0;margin:0;border:0}
+@media (max-width:768px){.table-responsive{width:100%;margin-bottom:15px;overflow-y:hidden;overflow-x:scroll;-ms-overflow-style:-ms-autohiding-scrollbar;border:1px solid #d6b161;-webkit-overflow-scrolling:touch}.table-responsive>.table{margin-bottom:0;background-color:#fff}.table-responsive>.table>thead>tr>th,.table-responsive>.table>tbody>tr>th,.table-responsive>.table>tfoot>tr>th,.table-responsive>.table>thead>tr>td,.table-responsive>.table>tbody>tr>td,.table-responsive>.table>tfoot>tr>td{white-space:nowrap} .table-responsive>.table-bordered{border:0}.table-responsive>.table-bordered>thead>tr>th:first-child,.table-responsive>.table-bordered>tbody>tr>th:first-child,.table-responsive>.table-bordered>tfoot>tr>th:first-child,.table-responsive>.table-bordered>thead>tr>td:first-child,.table-responsive>.table-bordered>tbody>tr>td:first-child,.table-responsive>.table-bordered>tfoot>tr>td:first-child{border-left:0} .table-responsive>.table-bordered>thead>tr>th:last-child,.table-responsive>.table-bordered>tbody>tr>th:last-child,.table-responsive>.table-bordered>tfoot>tr>th:last-child,.table-responsive>.table-bordered>thead>tr>td:last-child,.table-responsive>.table-bordered>tbody>tr>td:last-child,.table-responsive>.table-bordered>tfoot>tr>td:last-child{border-right:0} .table-responsive>.table-bordered>thead>tr:last-child>th,.table-responsive>.table-bordered>tbody>tr:last-child>th,.table-responsive>.table-bordered>tfoot>tr:last-child>th,.table-responsive>.table-bordered>thead>tr:last-child>td,.table-responsive>.table-bordered>tbody>tr:last-child>td,.table-responsive>.table-bordered>tfoot>tr:last-child>td{border-bottom:0}}fieldset{padding:0;margin:0;border:0}
legend{display:block;width:100%;padding:0;margin-bottom:17px;font-size:18px;line-height:inherit;color:#333;border:0;border-bottom:1px solid #bfbfbf}
label{display:inline-block;margin-bottom:5px;font-weight:bold}
input[type="search"]{-webkit-box-sizing:border-box;-moz-box-sizing:border-box;box-sizing:border-box}
@@ -148,7 +148,7 @@
.form-control::-moz-placeholder{color:#999}
.form-control:-ms-input-placeholder{color:#999}
.form-control::-webkit-input-placeholder{color:#999}
-.form-control,.ui-input,.ui-textarea,.ui-options .ui-options-input,.ui-form-slider .ui-form-slider-text,.ui-select-multiple{display:block;width:100%;height:27px;padding:4px 10px;font-size:12px;line-height:1.428571429;color:#555;vertical-align:middle;background-color:#fff;border:1px solid #bfbfbf;border-radius:3px;-webkit-box-shadow:inset 0 1px 1px rgba(0,0,0,0.075);box-shadow:inset 0 1px 1px rgba(0,0,0,0.075);-webkit-transition:border-color ease-in-out .15s, box-shadow ease-in-out .15s;transition:border-color ease-in-out .15s, box-shadow ease-in-out .15s}.form-control:focus{border-color:#66afe9;outline:0;-webkit-box-shadow:inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px rgba(102, 175, 233, 0.6);box-shadow:inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px rgba(102, 175, 233, 0.6)}
+.form-control,.ui-input,.ui-textarea,.ui-options .ui-options-input,.ui-form-slider .ui-form-slider-text,.ui-select-multiple{display:block;width:100%;height:27px;padding:4px 10px;font-size:12px;line-height:1.428571429;color:#555;vertical-align:middle;background-color:#fff;border:1px solid #aaa;border-radius:3px;-webkit-box-shadow:inset 0 1px 1px rgba(0,0,0,0.075);box-shadow:inset 0 1px 1px rgba(0,0,0,0.075);-webkit-transition:border-color ease-in-out .15s, box-shadow ease-in-out .15s;transition:border-color ease-in-out .15s, box-shadow ease-in-out .15s}.form-control:focus{border-color:#66afe9;outline:0;-webkit-box-shadow:inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px rgba(102, 175, 233, 0.6);box-shadow:inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px rgba(102, 175, 233, 0.6)}
.form-control[disabled],.form-control[readonly],fieldset[disabled] .form-control{cursor:not-allowed;background-color:#eee}
textarea.form-control{height:auto}
.form-group{margin-bottom:15px}
@@ -202,9 +202,9 @@
.btn-info{color:#fff;background-color:#3186a0;border-color:#010304}.btn-info:hover,.btn-info:focus,.btn-info:active,.btn-info.active,.open .dropdown-toggle.btn-info{color:#fff;background-color:#276c81;border-color:#000}
.btn-info:active,.btn-info.active,.open .dropdown-toggle.btn-info{background-image:none}
.btn-info.disabled,.btn-info[disabled],fieldset[disabled] .btn-info,.btn-info.disabled:hover,.btn-info[disabled]:hover,fieldset[disabled] .btn-info:hover,.btn-info.disabled:focus,.btn-info[disabled]:focus,fieldset[disabled] .btn-info:focus,.btn-info.disabled:active,.btn-info[disabled]:active,fieldset[disabled] .btn-info:active,.btn-info.disabled.active,.btn-info[disabled].active,fieldset[disabled] .btn-info.active{background-color:#3186a0;border-color:#010304}
-.btn-link{color:#5f6990;font-weight:normal;cursor:pointer;border-radius:0}.btn-link,.btn-link:active,.btn-link[disabled],fieldset[disabled] .btn-link{background-color:transparent;-webkit-box-shadow:none;box-shadow:none}
+.btn-link{color:#303030;font-weight:normal;cursor:pointer;border-radius:0}.btn-link,.btn-link:active,.btn-link[disabled],fieldset[disabled] .btn-link{background-color:transparent;-webkit-box-shadow:none;box-shadow:none}
.btn-link,.btn-link:hover,.btn-link:focus,.btn-link:active{border-color:transparent}
-.btn-link:hover,.btn-link:focus{color:#404862;text-decoration:underline;background-color:transparent}
+.btn-link:hover,.btn-link:focus{color:#0a0a0a;text-decoration:underline;background-color:transparent}
.btn-link[disabled]:hover,fieldset[disabled] .btn-link:hover,.btn-link[disabled]:focus,fieldset[disabled] .btn-link:focus{color:#999;text-decoration:none}
.btn-lg{padding:8px 14px;font-size:15px;line-height:1.33;border-radius:5px}
.btn-sm,.btn-xs{padding:3px 8px;font-size:11px;line-height:1.5;border-radius:2px}
@@ -486,7 +486,7 @@
textarea.input-group-sm>.form-control,textarea.input-group-sm>.input-group-addon,textarea.input-group-sm>.input-group-btn>.btn{height:auto}
.input-group-addon,.input-group-btn,.input-group .form-control{display:table-cell}.input-group-addon:not(:first-child):not(:last-child),.input-group-btn:not(:first-child):not(:last-child),.input-group .form-control:not(:first-child):not(:last-child){border-radius:0}
.input-group-addon,.input-group-btn{width:1%;white-space:nowrap;vertical-align:middle}
-.input-group-addon{padding:4px 10px;font-size:12px;font-weight:normal;line-height:1;text-align:center;background-color:#eee;border:1px solid #bfbfbf;border-radius:3px}.input-group-addon.input-sm{padding:3px 8px;font-size:11px;border-radius:2px}
+.input-group-addon{padding:4px 10px;font-size:12px;font-weight:normal;line-height:1;text-align:center;background-color:#eee;border:1px solid #aaa;border-radius:3px}.input-group-addon.input-sm{padding:3px 8px;font-size:11px;border-radius:2px}
.input-group-addon.input-lg{padding:8px 14px;font-size:15px;border-radius:5px}
.input-group-addon input[type="radio"],.input-group-addon input[type="checkbox"]{margin-top:0}
.input-group .form-control:first-child,.input-group-addon:first-child,.input-group-btn:first-child>.btn,.input-group-btn:first-child>.dropdown-toggle,.input-group-btn:last-child>.btn:not(:last-child):not(.dropdown-toggle){border-bottom-right-radius:0;border-top-right-radius:0}
@@ -502,7 +502,7 @@
.nav:after{clear:both}
.nav>li{position:relative;display:block}.nav>li>a{position:relative;display:block;padding:4px 10px}.nav>li>a:hover,.nav>li>a:focus{text-decoration:none;background-color:#eee}
.nav>li.disabled>a{color:#999}.nav>li.disabled>a:hover,.nav>li.disabled>a:focus{color:#999;text-decoration:none;background-color:transparent;cursor:not-allowed}
-.nav .open>a,.nav .open>a:hover,.nav .open>a:focus{background-color:#eee;border-color:#5f6990}
+.nav .open>a,.nav .open>a:hover,.nav .open>a:focus{background-color:#eee;border-color:#303030}
.nav .nav-divider{height:1px;margin:7.5px 0;overflow:hidden;background-color:#e5e5e5}
.nav>li>a>img{max-width:none}
.nav-tabs{border-bottom:1px solid #bfbfbf}.nav-tabs>li{float:left;margin-bottom:-1px}.nav-tabs>li>a{margin-right:2px;line-height:1.428571429;border:1px solid transparent;border-radius:3px 3px 0 0}.nav-tabs>li>a:hover{border-color:#eee #eee #bfbfbf}
@@ -526,8 +526,8 @@
.tabbable:after{clear:both}
.tab-content>.tab-pane,.pill-content>.pill-pane{display:none}
.tab-content>.active,.pill-content>.active{display:block}
-.nav .caret{border-top-color:#5f6990;border-bottom-color:#5f6990}
-.nav a:hover .caret{border-top-color:#404862;border-bottom-color:#404862}
+.nav .caret{border-top-color:#303030;border-bottom-color:#303030}
+.nav a:hover .caret{border-top-color:#0a0a0a;border-bottom-color:#0a0a0a}
.nav-tabs .dropdown-menu{margin-top:-1px;border-top-right-radius:0;border-top-left-radius:0}
.navbar{position:relative;z-index:1000;min-height:33px;margin-bottom:17px;border:1px solid transparent}.navbar:before,.navbar:after{content:" ";display:table;}
.navbar:after{clear:both}
@@ -617,7 +617,7 @@
.badge{display:inline-block;min-width:10px;padding:3px 7px;font-size:11px;font-weight:bold;color:#fff;line-height:1;vertical-align:baseline;white-space:nowrap;text-align:center;background-color:#999;border-radius:10px}.badge:empty{display:none}
a.badge:hover,a.badge:focus{color:#fff;text-decoration:none;cursor:pointer}
.btn .badge{position:relative;top:-1px}
-a.list-group-item.active>.badge,.nav-pills>.active>a>.badge{color:#5f6990;background-color:#fff}
+a.list-group-item.active>.badge,.nav-pills>.active>a>.badge{color:#303030;background-color:#fff}
.nav-pills>li>a>.badge{margin-left:3px}
.jumbotron{padding:30px;margin-bottom:30px;font-size:18px;font-weight:200;line-height:2.1428571435;color:inherit;background-color:#eee}.jumbotron h1{line-height:1;color:inherit}
.jumbotron p{line-height:1.4}
@@ -672,7 +672,7 @@
.panel>.list-group .list-group-item:last-child{border-bottom:0}
.panel-heading+.list-group .list-group-item:first-child{border-top-width:0}
.panel>.table{margin-bottom:0}
-.panel>.panel-body+.table{border-top:1px solid #bfbfbf}
+.panel>.panel-body+.table{border-top:1px solid #d6b161}
.panel-heading{padding:10px 15px;border-bottom:1px solid transparent;border-top-right-radius:2px;border-top-left-radius:2px}
.panel-title{margin-top:0;margin-bottom:0;font-size:14px}.panel-title>a{color:inherit}
.panel-footer{padding:10px 15px;background-color:#f5f5f5;border-top:1px solid #bfbfbf;border-bottom-right-radius:2px;border-bottom-left-radius:2px}
@@ -1797,7 +1797,7 @@
select{padding:2px;font-size:12px;line-height:1.428571429}
select,input,textarea{font:inherit}
.form-row select,.form-row textarea,.form-row input[type="text"],.form-row input[type="file"],.form-row input[type="password"]{max-width:90%}
-textarea,input[type="text"],input[type="password"]{font-size:12px;line-height:1.428571429;border:1px solid #bfbfbf;padding:3px}
+textarea,input[type="text"],input[type="password"]{font-size:12px;line-height:1.428571429;border:1px solid #aaa;padding:3px}
input[type="submit"],button{display:inline-block;padding:4px 10px;margin-bottom:0;font-size:12px;font-weight:normal;line-height:1.428571429;text-align:center;vertical-align:middle;cursor:pointer;border:1px solid transparent;border-radius:3px;white-space:nowrap;-webkit-user-select:none;-moz-user-select:none;-ms-user-select:none;-o-user-select:none;user-select:none;white-space:normal;color:#333;background-color:#f2f2f2;border-color:#bfbfbf}input[type="submit"]:focus,button:focus{outline:thin dotted #333;outline:5px auto -webkit-focus-ring-color;outline-offset:-2px}
input[type="submit"]:hover,button:hover,input[type="submit"]:focus,button:focus{color:#333;text-decoration:none}
input[type="submit"]:active,button:active,input[type="submit"].active,button.active{outline:0;background-image:none;-webkit-box-shadow:inset 0 3px 5px rgba(0,0,0,0.125);box-shadow:inset 0 3px 5px rgba(0,0,0,0.125)}
@@ -1808,7 +1808,7 @@
input[type="submit"].btn-primary,button.btn-primary{color:#fff;background-color:#5f6990;border-color:#0e0f15}input[type="submit"].btn-primary:hover,button.btn-primary:hover,input[type="submit"].btn-primary:focus,button.btn-primary:focus,input[type="submit"].btn-primary:active,button.btn-primary:active,input[type="submit"].btn-primary.active,button.btn-primary.active,.open .dropdown-toggleinput[type="submit"].btn-primary,.open .dropdown-togglebutton.btn-primary{color:#fff;background-color:#4e5777;border-color:#000}
input[type="submit"].btn-primary:active,button.btn-primary:active,input[type="submit"].btn-primary.active,button.btn-primary.active,.open .dropdown-toggleinput[type="submit"].btn-primary,.open .dropdown-togglebutton.btn-primary{background-image:none}
input[type="submit"].btn-primary.disabled,button.btn-primary.disabled,input[type="submit"].btn-primary[disabled],button.btn-primary[disabled],fieldset[disabled] input[type="submit"].btn-primary,fieldset[disabled] button.btn-primary,input[type="submit"].btn-primary.disabled:hover,button.btn-primary.disabled:hover,input[type="submit"].btn-primary[disabled]:hover,button.btn-primary[disabled]:hover,fieldset[disabled] input[type="submit"].btn-primary:hover,fieldset[disabled] button.btn-primary:hover,input[type="submit"].btn-primary.disabled:focus,button.btn-primary.disabled:focus,input[type="submit"].btn-primary[disabled]:focus,button.btn-primary[disabled]:focus,fieldset[disabled] input[type="submit"].btn-primary:focus,fieldset[disabled] button.btn-primary:focus,input[type="submit"].btn-primary.disabled:active,button.btn-primary.disabled:active,input[type="submit"].btn-primary[disabled]:active,button.btn-primary[disabled]:active,fieldset[disabled] input[type="submit"].btn-primary:active,fieldset[disabled] button.btn-primary:active,input[type="submit"].btn-primary.disabled.active,button.btn-primary.disabled.active,input[type="submit"].btn-primary[disabled].active,button.btn-primary[disabled].active,fieldset[disabled] input[type="submit"].btn-primary.active,fieldset[disabled] button.btn-primary.active{background-color:#5f6990;border-color:#0e0f15}
-.search-query{display:inline-block;padding:4px;font-size:12px;line-height:1.428571429;color:#555;border:1px solid #bfbfbf;padding-left:14px !important;padding-right:14px;margin-bottom:0;-webkit-border-radius:14px;-moz-border-radius:14px;border-radius:14px;max-width:auto}
+.search-query{display:inline-block;padding:4px;font-size:12px;line-height:1.428571429;color:#555;border:1px solid #aaa;padding-left:14px !important;padding-right:14px;margin-bottom:0;-webkit-border-radius:14px;-moz-border-radius:14px;border-radius:14px;max-width:auto}
.search-query:focus{border-color:rgba(24,132,218,0.8);-webkit-box-shadow:inset 0 1px 1px rgba(0,0,0,0.075),0 0 8px rgba(82,168,236,0.6);box-shadow:inset 0 1px 1px rgba(0,0,0,0.075),0 0 8px rgba(82,168,236,0.6);outline:0;outline:thin dotted \9;}
.search-spinner{position:absolute;display:none;right:6px;top:9px}
#search-clear-btn{position:absolute;right:6px;top:9px;display:block;font-size:1.4em !important;text-decoration:none;color:#888;display:inline-block;font:normal normal normal 14px/1 FontAwesome;font-size:inherit;text-rendering:auto;-moz-osx-font-smoothing:grayscale;font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale}#search-clear-btn:before{content:"\f057"}
@@ -1849,9 +1849,9 @@
table.tabletip th{white-space:nowrap;border-bottom:1px solid #444;padding-right:3px}
table.tabletip td{border-bottom:1px solid #ddd}
table.tabletip tbody tr:hover td{background-color:#eee}
-table.colored{border-top:solid #bfbfbf 1px;border-bottom:solid #bfbfbf 1px}
+table.colored{border-top:solid #d6b161 1px;border-bottom:solid #d6b161 1px}
table.colored td,table.colored th{text-align:left;padding:5px;line-height:1.428571429}
-table.colored tr.header{background:#ebd9b2;color:#000;background-repeat:repeat-x;background-position:top;border-bottom:solid #bfbfbf 1px;font-weight:bold}
+table.colored tr.header{background:#ebd9b2;color:#000;background-repeat:repeat-x;background-position:top;border-bottom:solid #d6b161 1px;font-weight:bold}
table.colored tr{background:#fff}
table.colored tr.odd_row{background:#f9f9f9}
div.debug{margin:10px;padding:5px;background:#FFFF99;border:solid #FFFF33 1px;color:black}
@@ -1862,7 +1862,7 @@
.grid tbody td,.ui-table tbody td,.ui-table-plain tbody td{line-height:1.428571429;border-top:solid #DDDDDD 1px;border-bottom:solid #DDDDDD 1px;padding:5px}
.grid tbody td:empty{padding:0}
.grid thead tr{height:2em}
-.grid thead th{line-height:1.428571429;background:#ebd9b2;color:#000;border-top:solid #bfbfbf 1px;border-bottom:solid #bfbfbf 1px;padding:5px;text-align:left;white-space:nowrap}
+.grid thead th{line-height:1.428571429;background:#ebd9b2;color:#000;border-top:solid #d6b161 1px;border-bottom:solid #d6b161 1px;padding:5px;text-align:left;white-space:nowrap}
.grid tfoot td{background-color:#F8F8F8;border-top:solid #DDDDDD 1px;border-bottom:solid #DDDDDD 1px;padding:5px}
.grid .current{background-color:#EEEEFF}
.count-box{min-width:1.1em;padding:5px;border-width:1px;border-style:solid;text-align:center;display:inline-block}
@@ -2203,7 +2203,7 @@
.collection-creator .footer .actions .other-options>*{display:none;margin-left:4px}
.search-input .search-query{width:100%;padding-right:24px}
.search-input .search-clear,.search-input .search-loading{position:relative;display:inline-block;float:right;margin-top:-24px;margin-right:4px;font-size:1.4em;line-height:23px;color:grey}
-.search-input .search-clear:hover{color:#5f6990}
+.search-input .search-clear:hover{color:#303030}
.dataset-choice{border:1px solid lightgrey;border-radius:3px;overflow:hidden;padding:10px 8px 8px 8px}.dataset-choice:hover{border-color:black;cursor:pointer}.dataset-choice:hover>*{cursor:pointer}
.dataset-choice .prompt{margin-right:8px}.dataset-choice .prompt:after{content:':'}
.dataset-choice .prompt:empty{display:none}
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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commit/galaxy-central: guerler: Ui: Add tooltip to options
by commits-noreply＠bitbucket.org 07 Feb '15
by commits-noreply＠bitbucket.org 07 Feb '15
07 Feb '15
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/9e945d2a9411/
Changeset: 9e945d2a9411
User: guerler
Date: 2015-02-07 01:47:28+00:00
Summary: Ui: Add tooltip to options
Affected #: 7 files
diff -r 54ed3adb6575addba47d627944ebd72f7547082d -r 9e945d2a94112f15b6819b206f26735d92e2681d client/galaxy/scripts/mvc/tools/tools-select-content.js
--- a/client/galaxy/scripts/mvc/tools/tools-select-content.js
+++ b/client/galaxy/scripts/mvc/tools/tools-select-content.js
@@ -48,7 +48,7 @@
// add single dataset selector
if (this.mode == 'single') {
- radio_buttons.push({icon: 'fa-file-o', label : '', value : 'single'});
+ radio_buttons.push({icon: 'fa-file-o', label: '', value: 'single', tooltip: 'Single dataset' });
this.select_single = new Ui.Select.View({
optional : options.optional,
error_text : hda_error,
@@ -64,7 +64,7 @@
// add multiple dataset selector
if (this.mode == 'single' || this.mode == 'multiple') {
- radio_buttons.push({icon: 'fa-files-o', label : '', value : 'multiple' });
+ radio_buttons.push({icon: 'fa-files-o', label: '', value: 'multiple', tooltip: 'Multiple datasets' });
this.select_multiple = new Ui.Select.View({
multiple : true,
error_text : hda_error,
@@ -80,7 +80,7 @@
// add collection selector
if (this.mode == 'single' || this.mode == 'collection') {
- radio_buttons.push({icon: 'fa-folder-o', label : '', value : 'collection' });
+ radio_buttons.push({icon: 'fa-folder-o', label: '', value: 'collection', tooltip: 'Dataset collection' });
this.select_collection = new Ui.Select.View({
error_text : hdca_error,
optional : options.optional,
diff -r 54ed3adb6575addba47d627944ebd72f7547082d -r 9e945d2a94112f15b6819b206f26735d92e2681d client/galaxy/scripts/mvc/ui/ui-options.js
--- a/client/galaxy/scripts/mvc/ui/ui-options.js
+++ b/client/galaxy/scripts/mvc/ui/ui-options.js
@@ -13,47 +13,47 @@
error_text : 'No data available.',
wait_text : 'Please wait...'
};
-
+
// configure options
this.options = Utils.merge(options, this.optionsDefault);
-
+
// create new element
this.setElement('<div class="ui-options"/>');
-
+
// create elements
this.$message = $('<div/>');
this.$options = $(this._template(options));
-
+
// append
this.$el.append(this.$message);
this.$el.append(this.$options);
-
+
// hide input field
if (!this.options.visible) {
this.$el.hide();
}
-
+
// initialize data
this.update(this.options.data);
-
+
// set initial value
if (this.options.value !== undefined) {
this.value(this.options.value);
}
-
+
// add change event. fires on trigger
var self = this;
this.on('change', function() {
self._change();
});
},
-
+
/** Update options
*/
update: function(options) {
// backup current value
var current = this._getValue();
-
+
// remove all options
this.$options.empty();
@@ -66,24 +66,25 @@
for (var key in options) {
var $option = $(this._templateOption(options[key]));
$option.addClass('ui-option');
+ $option.tooltip({title: options[key].tooltip, placement: 'bottom'});
this.$options.append($option);
}
}
-
+
// add change events
var self = this;
this.$el.find('input').on('change', function() {
self.value(self._getValue());
self._change();
});
-
+
// refresh
this._refresh();
-
+
// set previous value
this.value(current);
},
-
+
/** Return/Set current value
*/
value: function (new_value) {
@@ -93,16 +94,16 @@
if (!(new_value instanceof Array)) {
new_value = [new_value];
}
-
+
// reset selection
this.$el.find('input').prop('checked', false);
-
+
// update to new selection
for (var i in new_value) {
this.$el.find('input[value="' + new_value[i] + '"]').first().prop('checked', true);
};
}
-
+
// get and return value
return this._getValue();
},
@@ -122,7 +123,7 @@
}
return false;
},
-
+
/** Return first available option
*/
first: function() {
@@ -133,13 +134,13 @@
return undefined;
}
},
-
+
/** Validate the selected option/options
*/
validate: function() {
return Utils.validate(this.value());
},
-
+
/** Wait message during request processing
*/
wait: function() {
@@ -148,14 +149,14 @@
this.$options.hide();
}
},
-
+
/** Hide wait message
*/
unwait: function() {
this._messageHide();
this._refresh();
},
-
+
/** Trigger custom onchange callback function
*/
_change: function() {
@@ -163,7 +164,7 @@
this.options.onchange(this._getValue());
}
},
-
+
/** Refresh options view
*/
_refresh: function() {
@@ -175,7 +176,7 @@
this.$options.css('display', 'inline-block');
}
},
-
+
/** Return current selection
*/
_getValue: function() {
@@ -184,7 +185,7 @@
if (selected.length == 0) {
return '__null__';
}
-
+
// return multiple or single value
if (this.options.multiple) {
var values = [];
@@ -196,7 +197,7 @@
return selected.val();
}
},
-
+
/** Returns the number of options
*/
_size: function() {
@@ -211,13 +212,13 @@
this.$message.addClass('ui-message alert alert-' + status);
this.$message.html(text);
},
-
+
/** Hide message
*/
_messageHide: function() {
this.$message.hide();
},
-
+
/** Main template function
*/
_template: function() {
@@ -250,7 +251,7 @@
options.multiple = true;
Base.prototype.initialize.call(this, options);
},
-
+
/** Template for a single option
*/
_templateOption: function(pair) {
@@ -267,7 +268,7 @@
initialize: function(options) {
Base.prototype.initialize.call(this, options);
},
-
+
/** Return/Set current value
*/
value: function (new_value) {
@@ -277,11 +278,11 @@
this.$el.find('label').removeClass('active');
this.$el.find('[value="' + new_value + '"]').prop('checked', true).closest('label').addClass('active');
}
-
+
// get and return value
return this._getValue();
},
-
+
/** Template for a single option
*/
_templateOption: function(pair) {
@@ -293,7 +294,7 @@
'</label>';
return tmpl;
},
-
+
/** Main template function
*/
_template: function() {
diff -r 54ed3adb6575addba47d627944ebd72f7547082d -r 9e945d2a94112f15b6819b206f26735d92e2681d static/scripts/mvc/tools/tools-select-content.js
--- a/static/scripts/mvc/tools/tools-select-content.js
+++ b/static/scripts/mvc/tools/tools-select-content.js
@@ -48,7 +48,7 @@
// add single dataset selector
if (this.mode == 'single') {
- radio_buttons.push({icon: 'fa-file-o', label : '', value : 'single'});
+ radio_buttons.push({icon: 'fa-file-o', label: '', value: 'single', tooltip: 'Single dataset' });
this.select_single = new Ui.Select.View({
optional : options.optional,
error_text : hda_error,
@@ -64,7 +64,7 @@
// add multiple dataset selector
if (this.mode == 'single' || this.mode == 'multiple') {
- radio_buttons.push({icon: 'fa-files-o', label : '', value : 'multiple' });
+ radio_buttons.push({icon: 'fa-files-o', label: '', value: 'multiple', tooltip: 'Multiple datasets' });
this.select_multiple = new Ui.Select.View({
multiple : true,
error_text : hda_error,
@@ -80,7 +80,7 @@
// add collection selector
if (this.mode == 'single' || this.mode == 'collection') {
- radio_buttons.push({icon: 'fa-folder-o', label : '', value : 'collection' });
+ radio_buttons.push({icon: 'fa-folder-o', label: '', value: 'collection', tooltip: 'Dataset collection' });
this.select_collection = new Ui.Select.View({
error_text : hdca_error,
optional : options.optional,
diff -r 54ed3adb6575addba47d627944ebd72f7547082d -r 9e945d2a94112f15b6819b206f26735d92e2681d static/scripts/mvc/ui/ui-options.js
--- a/static/scripts/mvc/ui/ui-options.js
+++ b/static/scripts/mvc/ui/ui-options.js
@@ -13,47 +13,47 @@
error_text : 'No data available.',
wait_text : 'Please wait...'
};
-
+
// configure options
this.options = Utils.merge(options, this.optionsDefault);
-
+
// create new element
this.setElement('<div class="ui-options"/>');
-
+
// create elements
this.$message = $('<div/>');
this.$options = $(this._template(options));
-
+
// append
this.$el.append(this.$message);
this.$el.append(this.$options);
-
+
// hide input field
if (!this.options.visible) {
this.$el.hide();
}
-
+
// initialize data
this.update(this.options.data);
-
+
// set initial value
if (this.options.value !== undefined) {
this.value(this.options.value);
}
-
+
// add change event. fires on trigger
var self = this;
this.on('change', function() {
self._change();
});
},
-
+
/** Update options
*/
update: function(options) {
// backup current value
var current = this._getValue();
-
+
// remove all options
this.$options.empty();
@@ -66,24 +66,25 @@
for (var key in options) {
var $option = $(this._templateOption(options[key]));
$option.addClass('ui-option');
+ $option.tooltip({title: options[key].tooltip, placement: 'bottom'});
this.$options.append($option);
}
}
-
+
// add change events
var self = this;
this.$el.find('input').on('change', function() {
self.value(self._getValue());
self._change();
});
-
+
// refresh
this._refresh();
-
+
// set previous value
this.value(current);
},
-
+
/** Return/Set current value
*/
value: function (new_value) {
@@ -93,16 +94,16 @@
if (!(new_value instanceof Array)) {
new_value = [new_value];
}
-
+
// reset selection
this.$el.find('input').prop('checked', false);
-
+
// update to new selection
for (var i in new_value) {
this.$el.find('input[value="' + new_value[i] + '"]').first().prop('checked', true);
};
}
-
+
// get and return value
return this._getValue();
},
@@ -122,7 +123,7 @@
}
return false;
},
-
+
/** Return first available option
*/
first: function() {
@@ -133,13 +134,13 @@
return undefined;
}
},
-
+
/** Validate the selected option/options
*/
validate: function() {
return Utils.validate(this.value());
},
-
+
/** Wait message during request processing
*/
wait: function() {
@@ -148,14 +149,14 @@
this.$options.hide();
}
},
-
+
/** Hide wait message
*/
unwait: function() {
this._messageHide();
this._refresh();
},
-
+
/** Trigger custom onchange callback function
*/
_change: function() {
@@ -163,7 +164,7 @@
this.options.onchange(this._getValue());
}
},
-
+
/** Refresh options view
*/
_refresh: function() {
@@ -175,7 +176,7 @@
this.$options.css('display', 'inline-block');
}
},
-
+
/** Return current selection
*/
_getValue: function() {
@@ -184,7 +185,7 @@
if (selected.length == 0) {
return '__null__';
}
-
+
// return multiple or single value
if (this.options.multiple) {
var values = [];
@@ -196,7 +197,7 @@
return selected.val();
}
},
-
+
/** Returns the number of options
*/
_size: function() {
@@ -211,13 +212,13 @@
this.$message.addClass('ui-message alert alert-' + status);
this.$message.html(text);
},
-
+
/** Hide message
*/
_messageHide: function() {
this.$message.hide();
},
-
+
/** Main template function
*/
_template: function() {
@@ -250,7 +251,7 @@
options.multiple = true;
Base.prototype.initialize.call(this, options);
},
-
+
/** Template for a single option
*/
_templateOption: function(pair) {
@@ -267,7 +268,7 @@
initialize: function(options) {
Base.prototype.initialize.call(this, options);
},
-
+
/** Return/Set current value
*/
value: function (new_value) {
@@ -277,11 +278,11 @@
this.$el.find('label').removeClass('active');
this.$el.find('[value="' + new_value + '"]').prop('checked', true).closest('label').addClass('active');
}
-
+
// get and return value
return this._getValue();
},
-
+
/** Template for a single option
*/
_templateOption: function(pair) {
@@ -293,7 +294,7 @@
'</label>';
return tmpl;
},
-
+
/** Main template function
*/
_template: function() {
diff -r 54ed3adb6575addba47d627944ebd72f7547082d -r 9e945d2a94112f15b6819b206f26735d92e2681d static/scripts/packed/mvc/tools/tools-select-content.js
--- a/static/scripts/packed/mvc/tools/tools-select-content.js
+++ b/static/scripts/packed/mvc/tools/tools-select-content.js
@@ -1,1 +1,1 @@
-define(["utils/utils","mvc/ui/ui-misc","mvc/ui/ui-tabs","mvc/tools/tools-template"],function(c,e,b,a){var d=Backbone.View.extend({initialize:function(f,o){this.app=f;this.options=o;var n=this;this.setElement('<div class="ui-select-content"/>');this.list={};var l=[];if(o.type=="data_collection"){this.mode="collection"}else{if(o.multiple){this.mode="multiple"}else{this.mode="single"}}this.current=this.mode;this.list={};var j=c.textify(o.extensions);var h="No dataset available.";if(j){h="No "+j+" dataset available."}var k="No dataset list available.";if(j){k="No "+j+" dataset collection available."}if(this.mode=="single"){l.push({icon:"fa-file-o",label:"",value:"single"});this.select_single=new e.Select.View({optional:o.optional,error_text:h,onchange:function(){n.trigger("change")}});this.list.single={field:this.select_single,type:"hda"}}if(this.mode=="single"||this.mode=="multiple"){l.push({icon:"fa-files-o",label:"",value:"multiple"});this.select_multiple=new e.Select.View({multiple:true,error_text:h,onchange:function(){n.trigger("change")}});this.list.multiple={field:this.select_multiple,type:"hda"}}if(this.mode=="single"||this.mode=="collection"){l.push({icon:"fa-folder-o",label:"",value:"collection"});this.select_collection=new e.Select.View({error_text:k,optional:o.optional,onchange:function(){n.trigger("change")}});this.list.collection={field:this.select_collection,type:"hdca"}}this.button_type=new e.RadioButton.View({value:this.current,data:l,onchange:function(i){n.current=i;n.refresh();n.trigger("change")}});this.$batch=$(a.batchMode());var m=(_.size(this.list)-1)*60+"px";if(_.size(this.list)>1){this.$el.append(this.button_type.$el)}for(var g in this.list){this.$el.append(this.list[g].field.$el.css({"margin-left":m}))}this.$el.append(this.$batch.css({"margin-left":m}));this.update(o.data);if(this.options.value!==undefined){this.value(this.options.value)}this.refresh();this.on("change",function(){if(o.onchange){o.onchange(n.value())}})},wait:function(){for(var f in this.list){this.list[f].field.wait()}},unwait:function(){for(var f in this.list){this.list[f].field.unwait()}},update:function(g){var l=[];for(var j in g.hda){var k=g.hda[j];l.push({label:k.hid+": "+k.name,value:k.id})}var f=[];for(var j in g.hdca){var h=g.hdca[j];f.push({label:h.hid+": "+h.name,value:h.id})}this.select_single&&this.select_single.update(l);this.select_multiple&&this.select_multiple.update(l);this.select_collection&&this.select_collection.update(f);this.app.content.add(g)},value:function(h){if(h!==undefined){if(h&&h.values){try{var l=[];for(var g in h.values){l.push(h.values[g].id)}if(h&&h.values.length>0&&h.values[0].src=="hcda"){this.current="collection";this.select_collection.value(l[0])}else{if(this.mode=="multiple"){this.current="multiple";this.select_multiple.value(l)}else{this.current="single";this.select_single.value(l[0])}}}catch(k){console.debug("tools-select-content::value() - Skipped.")}}else{this.select_single&&this.select_single.value("__null__");this.select_multiple&&this.select_multiple.value("__null__");this.select_collection&&this.select_collection.value("__null__")}this.refresh()}var j=this._select().value();if(!(j instanceof Array)){j=[j]}var f={batch:this.mode=="single"&&this.current!="single",values:[]};for(var g in j){f.values.push({id:j[g],src:this.list[this.current].type})}return f},validate:function(){return this._select().validate()},refresh:function(){this.button_type.value(this.current);for(var g in this.list){var f=this.list[g].field.$el;if(this.current==g){f.show()}else{f.hide()}}if(this.mode=="single"&&this.current!="single"){this.$batch.show()}else{this.$batch.hide()}},_select:function(){return this.list[this.current].field}});return{View:d}});
\ No newline at end of file
+define(["utils/utils","mvc/ui/ui-misc","mvc/ui/ui-tabs","mvc/tools/tools-template"],function(c,e,b,a){var d=Backbone.View.extend({initialize:function(f,o){this.app=f;this.options=o;var n=this;this.setElement('<div class="ui-select-content"/>');this.list={};var l=[];if(o.type=="data_collection"){this.mode="collection"}else{if(o.multiple){this.mode="multiple"}else{this.mode="single"}}this.current=this.mode;this.list={};var j=c.textify(o.extensions);var h="No dataset available.";if(j){h="No "+j+" dataset available."}var k="No dataset list available.";if(j){k="No "+j+" dataset collection available."}if(this.mode=="single"){l.push({icon:"fa-file-o",label:"",value:"single",tooltip:"Single dataset"});this.select_single=new e.Select.View({optional:o.optional,error_text:h,onchange:function(){n.trigger("change")}});this.list.single={field:this.select_single,type:"hda"}}if(this.mode=="single"||this.mode=="multiple"){l.push({icon:"fa-files-o",label:"",value:"multiple",tooltip:"Multiple datasets"});this.select_multiple=new e.Select.View({multiple:true,error_text:h,onchange:function(){n.trigger("change")}});this.list.multiple={field:this.select_multiple,type:"hda"}}if(this.mode=="single"||this.mode=="collection"){l.push({icon:"fa-folder-o",label:"",value:"collection",tooltip:"Dataset collection"});this.select_collection=new e.Select.View({error_text:k,optional:o.optional,onchange:function(){n.trigger("change")}});this.list.collection={field:this.select_collection,type:"hdca"}}this.button_type=new e.RadioButton.View({value:this.current,data:l,onchange:function(i){n.current=i;n.refresh();n.trigger("change")}});this.$batch=$(a.batchMode());var m=(_.size(this.list)-1)*60+"px";if(_.size(this.list)>1){this.$el.append(this.button_type.$el)}for(var g in this.list){this.$el.append(this.list[g].field.$el.css({"margin-left":m}))}this.$el.append(this.$batch.css({"margin-left":m}));this.update(o.data);if(this.options.value!==undefined){this.value(this.options.value)}this.refresh();this.on("change",function(){if(o.onchange){o.onchange(n.value())}})},wait:function(){for(var f in this.list){this.list[f].field.wait()}},unwait:function(){for(var f in this.list){this.list[f].field.unwait()}},update:function(g){var l=[];for(var j in g.hda){var k=g.hda[j];l.push({label:k.hid+": "+k.name,value:k.id})}var f=[];for(var j in g.hdca){var h=g.hdca[j];f.push({label:h.hid+": "+h.name,value:h.id})}this.select_single&&this.select_single.update(l);this.select_multiple&&this.select_multiple.update(l);this.select_collection&&this.select_collection.update(f);this.app.content.add(g)},value:function(h){if(h!==undefined){if(h&&h.values){try{var l=[];for(var g in h.values){l.push(h.values[g].id)}if(h&&h.values.length>0&&h.values[0].src=="hcda"){this.current="collection";this.select_collection.value(l[0])}else{if(this.mode=="multiple"){this.current="multiple";this.select_multiple.value(l)}else{this.current="single";this.select_single.value(l[0])}}}catch(k){console.debug("tools-select-content::value() - Skipped.")}}else{this.select_single&&this.select_single.value("__null__");this.select_multiple&&this.select_multiple.value("__null__");this.select_collection&&this.select_collection.value("__null__")}this.refresh()}var j=this._select().value();if(!(j instanceof Array)){j=[j]}var f={batch:this.mode=="single"&&this.current!="single",values:[]};for(var g in j){f.values.push({id:j[g],src:this.list[this.current].type})}return f},validate:function(){return this._select().validate()},refresh:function(){this.button_type.value(this.current);for(var g in this.list){var f=this.list[g].field.$el;if(this.current==g){f.show()}else{f.hide()}}if(this.mode=="single"&&this.current!="single"){this.$batch.show()}else{this.$batch.hide()}},_select:function(){return this.list[this.current].field}});return{View:d}});
\ No newline at end of file
diff -r 54ed3adb6575addba47d627944ebd72f7547082d -r 9e945d2a94112f15b6819b206f26735d92e2681d static/scripts/packed/mvc/ui/ui-options.js
--- a/static/scripts/packed/mvc/ui/ui-options.js
+++ b/static/scripts/packed/mvc/ui/ui-options.js
@@ -1,1 +1,1 @@
-define(["utils/utils"],function(b){var a=Backbone.View.extend({initialize:function(g){this.optionsDefault={visible:true,data:[],id:b.uuid(),error_text:"No data available.",wait_text:"Please wait..."};this.options=b.merge(g,this.optionsDefault);this.setElement('<div class="ui-options"/>');this.$message=$("<div/>");this.$options=$(this._template(g));this.$el.append(this.$message);this.$el.append(this.$options);if(!this.options.visible){this.$el.hide()}this.update(this.options.data);if(this.options.value!==undefined){this.value(this.options.value)}var f=this;this.on("change",function(){f._change()})},update:function(g){var j=this._getValue();this.$options.empty();if(this._templateOptions){this.$options.append(this._templateOptions(g))}else{for(var h in g){var i=$(this._templateOption(g[h]));i.addClass("ui-option");this.$options.append(i)}}var f=this;this.$el.find("input").on("change",function(){f.value(f._getValue());f._change()});this._refresh();this.value(j)},value:function(g){if(g!==undefined){if(!(g instanceof Array)){g=[g]}this.$el.find("input").prop("checked",false);for(var f in g){this.$el.find('input[value="'+g[f]+'"]').first().prop("checked",true)}}return this._getValue()},exists:function(g){if(g!==undefined){if(!(g instanceof Array)){g=[g]}for(var f in g){if(this.$el.find('input[value="'+g[f]+'"]').length>0){return true}}}return false},first:function(){var f=this.$el.find("input");if(f.length>0){return f.val()}else{return undefined}},validate:function(){return b.validate(this.value())},wait:function(){if(this._size()==0){this._messageShow(this.options.wait_text,"info");this.$options.hide()}},unwait:function(){this._messageHide();this._refresh()},_change:function(){if(this.options.onchange){this.options.onchange(this._getValue())}},_refresh:function(){if(this._size()==0){this._messageShow(this.options.error_text,"danger");this.$options.hide()}else{this._messageHide();this.$options.css("display","inline-block")}},_getValue:function(){var g=this.$el.find(":checked");if(g.length==0){return"__null__"}if(this.options.multiple){var f=[];g.each(function(){f.push($(this).val())});return f}else{return g.val()}},_size:function(){return this.$el.find(".ui-option").length},_messageShow:function(g,f){this.$message.show();this.$message.removeClass();this.$message.addClass("ui-message alert alert-"+f);this.$message.html(g)},_messageHide:function(){this.$message.hide()},_template:function(){return'<div class="ui-options-input"/>'}});var d={};d.View=a.extend({initialize:function(f){a.prototype.initialize.call(this,f)},_templateOption:function(f){return'<div><input type="radio" name="'+this.options.id+'" value="'+f.value+'"/>'+f.label+"<br></div>"}});var c={};c.View=a.extend({initialize:function(f){f.multiple=true;a.prototype.initialize.call(this,f)},_templateOption:function(f){return'<div><input type="checkbox" name="'+this.options.id+'" value="'+f.value+'"/>'+f.label+"<br></div>"}});var e={};e.View=a.extend({initialize:function(f){a.prototype.initialize.call(this,f)},value:function(f){if(f!==undefined){this.$el.find("input").prop("checked",false);this.$el.find("label").removeClass("active");this.$el.find('[value="'+f+'"]').prop("checked",true).closest("label").addClass("active")}return this._getValue()},_templateOption:function(g){var f='<label class="btn btn-default">';if(g.icon){f+='<i class="fa '+g.icon+'"/>'}f+='<input type="radio" name="'+this.options.id+'" value="'+g.value+'">'+g.label+"</label>";return f},_template:function(){return'<div class="btn-group ui-radiobutton" data-toggle="buttons"/>'}});return{Base:a,Radio:d,RadioButton:e,Checkbox:c}});
\ No newline at end of file
+define(["utils/utils"],function(b){var a=Backbone.View.extend({initialize:function(g){this.optionsDefault={visible:true,data:[],id:b.uuid(),error_text:"No data available.",wait_text:"Please wait..."};this.options=b.merge(g,this.optionsDefault);this.setElement('<div class="ui-options"/>');this.$message=$("<div/>");this.$options=$(this._template(g));this.$el.append(this.$message);this.$el.append(this.$options);if(!this.options.visible){this.$el.hide()}this.update(this.options.data);if(this.options.value!==undefined){this.value(this.options.value)}var f=this;this.on("change",function(){f._change()})},update:function(g){var j=this._getValue();this.$options.empty();if(this._templateOptions){this.$options.append(this._templateOptions(g))}else{for(var h in g){var i=$(this._templateOption(g[h]));i.addClass("ui-option");i.tooltip({title:g[h].tooltip,placement:"bottom"});this.$options.append(i)}}var f=this;this.$el.find("input").on("change",function(){f.value(f._getValue());f._change()});this._refresh();this.value(j)},value:function(g){if(g!==undefined){if(!(g instanceof Array)){g=[g]}this.$el.find("input").prop("checked",false);for(var f in g){this.$el.find('input[value="'+g[f]+'"]').first().prop("checked",true)}}return this._getValue()},exists:function(g){if(g!==undefined){if(!(g instanceof Array)){g=[g]}for(var f in g){if(this.$el.find('input[value="'+g[f]+'"]').length>0){return true}}}return false},first:function(){var f=this.$el.find("input");if(f.length>0){return f.val()}else{return undefined}},validate:function(){return b.validate(this.value())},wait:function(){if(this._size()==0){this._messageShow(this.options.wait_text,"info");this.$options.hide()}},unwait:function(){this._messageHide();this._refresh()},_change:function(){if(this.options.onchange){this.options.onchange(this._getValue())}},_refresh:function(){if(this._size()==0){this._messageShow(this.options.error_text,"danger");this.$options.hide()}else{this._messageHide();this.$options.css("display","inline-block")}},_getValue:function(){var g=this.$el.find(":checked");if(g.length==0){return"__null__"}if(this.options.multiple){var f=[];g.each(function(){f.push($(this).val())});return f}else{return g.val()}},_size:function(){return this.$el.find(".ui-option").length},_messageShow:function(g,f){this.$message.show();this.$message.removeClass();this.$message.addClass("ui-message alert alert-"+f);this.$message.html(g)},_messageHide:function(){this.$message.hide()},_template:function(){return'<div class="ui-options-input"/>'}});var d={};d.View=a.extend({initialize:function(f){a.prototype.initialize.call(this,f)},_templateOption:function(f){return'<div><input type="radio" name="'+this.options.id+'" value="'+f.value+'"/>'+f.label+"<br></div>"}});var c={};c.View=a.extend({initialize:function(f){f.multiple=true;a.prototype.initialize.call(this,f)},_templateOption:function(f){return'<div><input type="checkbox" name="'+this.options.id+'" value="'+f.value+'"/>'+f.label+"<br></div>"}});var e={};e.View=a.extend({initialize:function(f){a.prototype.initialize.call(this,f)},value:function(f){if(f!==undefined){this.$el.find("input").prop("checked",false);this.$el.find("label").removeClass("active");this.$el.find('[value="'+f+'"]').prop("checked",true).closest("label").addClass("active")}return this._getValue()},_templateOption:function(g){var f='<label class="btn btn-default">';if(g.icon){f+='<i class="fa '+g.icon+'"/>'}f+='<input type="radio" name="'+this.options.id+'" value="'+g.value+'">'+g.label+"</label>";return f},_template:function(){return'<div class="btn-group ui-radiobutton" data-toggle="buttons"/>'}});return{Base:a,Radio:d,RadioButton:e,Checkbox:c}});
\ No newline at end of file
diff -r 54ed3adb6575addba47d627944ebd72f7547082d -r 9e945d2a94112f15b6819b206f26735d92e2681d static/style/blue/base.css
--- a/static/style/blue/base.css
+++ b/static/style/blue/base.css
@@ -41,7 +41,7 @@
body{font-family:"Lucida Grande",verdana,arial,helvetica,sans-serif;font-size:12px;line-height:1.428571429;color:#333;background-color:#fff}
input,button,select,textarea{font-family:inherit;font-size:inherit;line-height:inherit}
button,input,select[multiple],textarea{background-image:none}
-a{color:#303030;text-decoration:none}a:hover,a:focus{color:#0a0a0a;text-decoration:underline}
+a{color:#5f6990;text-decoration:none}a:hover,a:focus{color:#404862;text-decoration:underline}
a:focus{outline:thin dotted #333;outline:5px auto -webkit-focus-ring-color;outline-offset:-2px}
img{vertical-align:middle}
.img-responsive{display:block;max-width:100%;height:auto}
@@ -114,13 +114,13 @@
.col-xs-12{width:100%}
@media (min-width:768px){.container{max-width:750px} .col-sm-1,.col-sm-2,.col-sm-3,.col-sm-4,.col-sm-5,.col-sm-6,.col-sm-7,.col-sm-8,.col-sm-9,.col-sm-10,.col-sm-11{float:left} .col-sm-1{width:8.333333333333332%} .col-sm-2{width:16.666666666666664%} .col-sm-3{width:25%} .col-sm-4{width:33.33333333333333%} .col-sm-5{width:41.66666666666667%} .col-sm-6{width:50%} .col-sm-7{width:58.333333333333336%} .col-sm-8{width:66.66666666666666%} .col-sm-9{width:75%} .col-sm-10{width:83.33333333333334%} .col-sm-11{width:91.66666666666666%} .col-sm-12{width:100%} .col-sm-push-1{left:8.333333333333332%} .col-sm-push-2{left:16.666666666666664%} .col-sm-push-3{left:25%} .col-sm-push-4{left:33.33333333333333%} .col-sm-push-5{left:41.66666666666667%} .col-sm-push-6{left:50%} .col-sm-push-7{left:58.333333333333336%} .col-sm-push-8{left:66.66666666666666%} .col-sm-push-9{left:75%} .col-sm-push-10{left:83.33333333333334%} .col-sm-push-11{left:91.66666666666666%} .col-sm-pull-1{right:8.333333333333332%} .col-sm-pull-2{right:16.666666666666664%} .col-sm-pull-3{right:25%} .col-sm-pull-4{right:33.33333333333333%} .col-sm-pull-5{right:41.66666666666667%} .col-sm-pull-6{right:50%} .col-sm-pull-7{right:58.333333333333336%} .col-sm-pull-8{right:66.66666666666666%} .col-sm-pull-9{right:75%} .col-sm-pull-10{right:83.33333333333334%} .col-sm-pull-11{right:91.66666666666666%} .col-sm-offset-1{margin-left:8.333333333333332%} .col-sm-offset-2{margin-left:16.666666666666664%} .col-sm-offset-3{margin-left:25%} .col-sm-offset-4{margin-left:33.33333333333333%} .col-sm-offset-5{margin-left:41.66666666666667%} .col-sm-offset-6{margin-left:50%} .col-sm-offset-7{margin-left:58.333333333333336%} .col-sm-offset-8{margin-left:66.66666666666666%} .col-sm-offset-9{margin-left:75%} .col-sm-offset-10{margin-left:83.33333333333334%} .col-sm-offset-11{margin-left:91.66666666666666%}}@media (min-width:992px){.container{max-width:970px} .col-md-1,.col-md-2,.col-md-3,.col-md-4,.col-md-5,.col-md-6,.col-md-7,.col-md-8,.col-md-9,.col-md-10,.col-md-11{float:left} .col-md-1{width:8.333333333333332%} .col-md-2{width:16.666666666666664%} .col-md-3{width:25%} .col-md-4{width:33.33333333333333%} .col-md-5{width:41.66666666666667%} .col-md-6{width:50%} .col-md-7{width:58.333333333333336%} .col-md-8{width:66.66666666666666%} .col-md-9{width:75%} .col-md-10{width:83.33333333333334%} .col-md-11{width:91.66666666666666%} .col-md-12{width:100%} .col-md-push-0{left:auto} .col-md-push-1{left:8.333333333333332%} .col-md-push-2{left:16.666666666666664%} .col-md-push-3{left:25%} .col-md-push-4{left:33.33333333333333%} .col-md-push-5{left:41.66666666666667%} .col-md-push-6{left:50%} .col-md-push-7{left:58.333333333333336%} .col-md-push-8{left:66.66666666666666%} .col-md-push-9{left:75%} .col-md-push-10{left:83.33333333333334%} .col-md-push-11{left:91.66666666666666%} .col-md-pull-0{right:auto} .col-md-pull-1{right:8.333333333333332%} .col-md-pull-2{right:16.666666666666664%} .col-md-pull-3{right:25%} .col-md-pull-4{right:33.33333333333333%} .col-md-pull-5{right:41.66666666666667%} .col-md-pull-6{right:50%} .col-md-pull-7{right:58.333333333333336%} .col-md-pull-8{right:66.66666666666666%} .col-md-pull-9{right:75%} .col-md-pull-10{right:83.33333333333334%} .col-md-pull-11{right:91.66666666666666%} .col-md-offset-0{margin-left:0} .col-md-offset-1{margin-left:8.333333333333332%} .col-md-offset-2{margin-left:16.666666666666664%} .col-md-offset-3{margin-left:25%} .col-md-offset-4{margin-left:33.33333333333333%} .col-md-offset-5{margin-left:41.66666666666667%} .col-md-offset-6{margin-left:50%} .col-md-offset-7{margin-left:58.333333333333336%} .col-md-offset-8{margin-left:66.66666666666666%} .col-md-offset-9{margin-left:75%} .col-md-offset-10{margin-left:83.33333333333334%} .col-md-offset-11{margin-left:91.66666666666666%}}@media (min-width:1200px){.container{max-width:1170px} .col-lg-1,.col-lg-2,.col-lg-3,.col-lg-4,.col-lg-5,.col-lg-6,.col-lg-7,.col-lg-8,.col-lg-9,.col-lg-10,.col-lg-11{float:left} .col-lg-1{width:8.333333333333332%} .col-lg-2{width:16.666666666666664%} .col-lg-3{width:25%} .col-lg-4{width:33.33333333333333%} .col-lg-5{width:41.66666666666667%} .col-lg-6{width:50%} .col-lg-7{width:58.333333333333336%} .col-lg-8{width:66.66666666666666%} .col-lg-9{width:75%} .col-lg-10{width:83.33333333333334%} .col-lg-11{width:91.66666666666666%} .col-lg-12{width:100%} .col-lg-push-0{left:auto} .col-lg-push-1{left:8.333333333333332%} .col-lg-push-2{left:16.666666666666664%} .col-lg-push-3{left:25%} .col-lg-push-4{left:33.33333333333333%} .col-lg-push-5{left:41.66666666666667%} .col-lg-push-6{left:50%} .col-lg-push-7{left:58.333333333333336%} .col-lg-push-8{left:66.66666666666666%} .col-lg-push-9{left:75%} .col-lg-push-10{left:83.33333333333334%} .col-lg-push-11{left:91.66666666666666%} .col-lg-pull-0{right:auto} .col-lg-pull-1{right:8.333333333333332%} .col-lg-pull-2{right:16.666666666666664%} .col-lg-pull-3{right:25%} .col-lg-pull-4{right:33.33333333333333%} .col-lg-pull-5{right:41.66666666666667%} .col-lg-pull-6{right:50%} .col-lg-pull-7{right:58.333333333333336%} .col-lg-pull-8{right:66.66666666666666%} .col-lg-pull-9{right:75%} .col-lg-pull-10{right:83.33333333333334%} .col-lg-pull-11{right:91.66666666666666%} .col-lg-offset-0{margin-left:0} .col-lg-offset-1{margin-left:8.333333333333332%} .col-lg-offset-2{margin-left:16.666666666666664%} .col-lg-offset-3{margin-left:25%} .col-lg-offset-4{margin-left:33.33333333333333%} .col-lg-offset-5{margin-left:41.66666666666667%} .col-lg-offset-6{margin-left:50%} .col-lg-offset-7{margin-left:58.333333333333336%} .col-lg-offset-8{margin-left:66.66666666666666%} .col-lg-offset-9{margin-left:75%} .col-lg-offset-10{margin-left:83.33333333333334%} .col-lg-offset-11{margin-left:91.66666666666666%}}table{max-width:100%;background-color:transparent}
th{text-align:left}
-.table{width:100%;margin-bottom:17px}.table thead>tr>th,.table tbody>tr>th,.table tfoot>tr>th,.table thead>tr>td,.table tbody>tr>td,.table tfoot>tr>td{padding:8px;line-height:1.428571429;vertical-align:top;border-top:1px solid #d6b161}
-.table thead>tr>th{vertical-align:bottom;border-bottom:2px solid #d6b161}
+.table{width:100%;margin-bottom:17px}.table thead>tr>th,.table tbody>tr>th,.table tfoot>tr>th,.table thead>tr>td,.table tbody>tr>td,.table tfoot>tr>td{padding:8px;line-height:1.428571429;vertical-align:top;border-top:1px solid #bfbfbf}
+.table thead>tr>th{vertical-align:bottom;border-bottom:2px solid #bfbfbf}
.table caption+thead tr:first-child th,.table colgroup+thead tr:first-child th,.table thead:first-child tr:first-child th,.table caption+thead tr:first-child td,.table colgroup+thead tr:first-child td,.table thead:first-child tr:first-child td{border-top:0}
-.table tbody+tbody{border-top:2px solid #d6b161}
+.table tbody+tbody{border-top:2px solid #bfbfbf}
.table .table{background-color:#fff}
.table-condensed thead>tr>th,.table-condensed tbody>tr>th,.table-condensed tfoot>tr>th,.table-condensed thead>tr>td,.table-condensed tbody>tr>td,.table-condensed tfoot>tr>td{padding:5px}
-.table-bordered{border:1px solid #d6b161}.table-bordered>thead>tr>th,.table-bordered>tbody>tr>th,.table-bordered>tfoot>tr>th,.table-bordered>thead>tr>td,.table-bordered>tbody>tr>td,.table-bordered>tfoot>tr>td{border:1px solid #d6b161}
+.table-bordered{border:1px solid #bfbfbf}.table-bordered>thead>tr>th,.table-bordered>tbody>tr>th,.table-bordered>tfoot>tr>th,.table-bordered>thead>tr>td,.table-bordered>tbody>tr>td,.table-bordered>tfoot>tr>td{border:1px solid #bfbfbf}
.table-bordered>thead>tr>th,.table-bordered>thead>tr>td{border-bottom-width:2px}
.table-striped>tbody>tr:nth-child(odd)>td,.table-striped>tbody>tr:nth-child(odd)>th{background-color:#f9f9f9}
.table-hover>tbody>tr:hover>td,.table-hover>tbody>tr:hover>th{background-color:#f5f5f5}
@@ -133,7 +133,7 @@
.table-hover>tbody>tr>td.danger:hover,.table-hover>tbody>tr>th.danger:hover,.table-hover>tbody>tr.danger:hover>td,.table-hover>tbody>tr.danger:hover>th{background-color:#f7b0ae;border-color:#c61913}
.table>thead>tr>td.warning,.table>tbody>tr>td.warning,.table>tfoot>tr>td.warning,.table>thead>tr>th.warning,.table>tbody>tr>th.warning,.table>tfoot>tr>th.warning,.table>thead>tr.warning>td,.table>tbody>tr.warning>td,.table>tfoot>tr.warning>td,.table>thead>tr.warning>th,.table>tbody>tr.warning>th,.table>tfoot>tr.warning>th{background-color:#fce1ba;border-color:#e28709}
.table-hover>tbody>tr>td.warning:hover,.table-hover>tbody>tr>th.warning:hover,.table-hover>tbody>tr.warning:hover>td,.table-hover>tbody>tr.warning:hover>th{background-color:#fbd6a2;border-color:#c97908}
-@media (max-width:768px){.table-responsive{width:100%;margin-bottom:15px;overflow-y:hidden;overflow-x:scroll;-ms-overflow-style:-ms-autohiding-scrollbar;border:1px solid #d6b161;-webkit-overflow-scrolling:touch}.table-responsive>.table{margin-bottom:0;background-color:#fff}.table-responsive>.table>thead>tr>th,.table-responsive>.table>tbody>tr>th,.table-responsive>.table>tfoot>tr>th,.table-responsive>.table>thead>tr>td,.table-responsive>.table>tbody>tr>td,.table-responsive>.table>tfoot>tr>td{white-space:nowrap} .table-responsive>.table-bordered{border:0}.table-responsive>.table-bordered>thead>tr>th:first-child,.table-responsive>.table-bordered>tbody>tr>th:first-child,.table-responsive>.table-bordered>tfoot>tr>th:first-child,.table-responsive>.table-bordered>thead>tr>td:first-child,.table-responsive>.table-bordered>tbody>tr>td:first-child,.table-responsive>.table-bordered>tfoot>tr>td:first-child{border-left:0} .table-responsive>.table-bordered>thead>tr>th:last-child,.table-responsive>.table-bordered>tbody>tr>th:last-child,.table-responsive>.table-bordered>tfoot>tr>th:last-child,.table-responsive>.table-bordered>thead>tr>td:last-child,.table-responsive>.table-bordered>tbody>tr>td:last-child,.table-responsive>.table-bordered>tfoot>tr>td:last-child{border-right:0} .table-responsive>.table-bordered>thead>tr:last-child>th,.table-responsive>.table-bordered>tbody>tr:last-child>th,.table-responsive>.table-bordered>tfoot>tr:last-child>th,.table-responsive>.table-bordered>thead>tr:last-child>td,.table-responsive>.table-bordered>tbody>tr:last-child>td,.table-responsive>.table-bordered>tfoot>tr:last-child>td{border-bottom:0}}fieldset{padding:0;margin:0;border:0}
+@media (max-width:768px){.table-responsive{width:100%;margin-bottom:15px;overflow-y:hidden;overflow-x:scroll;-ms-overflow-style:-ms-autohiding-scrollbar;border:1px solid #bfbfbf;-webkit-overflow-scrolling:touch}.table-responsive>.table{margin-bottom:0;background-color:#fff}.table-responsive>.table>thead>tr>th,.table-responsive>.table>tbody>tr>th,.table-responsive>.table>tfoot>tr>th,.table-responsive>.table>thead>tr>td,.table-responsive>.table>tbody>tr>td,.table-responsive>.table>tfoot>tr>td{white-space:nowrap} .table-responsive>.table-bordered{border:0}.table-responsive>.table-bordered>thead>tr>th:first-child,.table-responsive>.table-bordered>tbody>tr>th:first-child,.table-responsive>.table-bordered>tfoot>tr>th:first-child,.table-responsive>.table-bordered>thead>tr>td:first-child,.table-responsive>.table-bordered>tbody>tr>td:first-child,.table-responsive>.table-bordered>tfoot>tr>td:first-child{border-left:0} .table-responsive>.table-bordered>thead>tr>th:last-child,.table-responsive>.table-bordered>tbody>tr>th:last-child,.table-responsive>.table-bordered>tfoot>tr>th:last-child,.table-responsive>.table-bordered>thead>tr>td:last-child,.table-responsive>.table-bordered>tbody>tr>td:last-child,.table-responsive>.table-bordered>tfoot>tr>td:last-child{border-right:0} .table-responsive>.table-bordered>thead>tr:last-child>th,.table-responsive>.table-bordered>tbody>tr:last-child>th,.table-responsive>.table-bordered>tfoot>tr:last-child>th,.table-responsive>.table-bordered>thead>tr:last-child>td,.table-responsive>.table-bordered>tbody>tr:last-child>td,.table-responsive>.table-bordered>tfoot>tr:last-child>td{border-bottom:0}}fieldset{padding:0;margin:0;border:0}
legend{display:block;width:100%;padding:0;margin-bottom:17px;font-size:18px;line-height:inherit;color:#333;border:0;border-bottom:1px solid #bfbfbf}
label{display:inline-block;margin-bottom:5px;font-weight:bold}
input[type="search"]{-webkit-box-sizing:border-box;-moz-box-sizing:border-box;box-sizing:border-box}
@@ -148,7 +148,7 @@
.form-control::-moz-placeholder{color:#999}
.form-control:-ms-input-placeholder{color:#999}
.form-control::-webkit-input-placeholder{color:#999}
-.form-control,.ui-input,.ui-textarea,.ui-options .ui-options-input,.ui-form-slider .ui-form-slider-text,.ui-select-multiple{display:block;width:100%;height:27px;padding:4px 10px;font-size:12px;line-height:1.428571429;color:#555;vertical-align:middle;background-color:#fff;border:1px solid #aaa;border-radius:3px;-webkit-box-shadow:inset 0 1px 1px rgba(0,0,0,0.075);box-shadow:inset 0 1px 1px rgba(0,0,0,0.075);-webkit-transition:border-color ease-in-out .15s, box-shadow ease-in-out .15s;transition:border-color ease-in-out .15s, box-shadow ease-in-out .15s}.form-control:focus{border-color:#66afe9;outline:0;-webkit-box-shadow:inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px rgba(102, 175, 233, 0.6);box-shadow:inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px rgba(102, 175, 233, 0.6)}
+.form-control,.ui-input,.ui-textarea,.ui-options .ui-options-input,.ui-form-slider .ui-form-slider-text,.ui-select-multiple{display:block;width:100%;height:27px;padding:4px 10px;font-size:12px;line-height:1.428571429;color:#555;vertical-align:middle;background-color:#fff;border:1px solid #bfbfbf;border-radius:3px;-webkit-box-shadow:inset 0 1px 1px rgba(0,0,0,0.075);box-shadow:inset 0 1px 1px rgba(0,0,0,0.075);-webkit-transition:border-color ease-in-out .15s, box-shadow ease-in-out .15s;transition:border-color ease-in-out .15s, box-shadow ease-in-out .15s}.form-control:focus{border-color:#66afe9;outline:0;-webkit-box-shadow:inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px rgba(102, 175, 233, 0.6);box-shadow:inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px rgba(102, 175, 233, 0.6)}
.form-control[disabled],.form-control[readonly],fieldset[disabled] .form-control{cursor:not-allowed;background-color:#eee}
textarea.form-control{height:auto}
.form-group{margin-bottom:15px}
@@ -202,9 +202,9 @@
.btn-info{color:#fff;background-color:#3186a0;border-color:#010304}.btn-info:hover,.btn-info:focus,.btn-info:active,.btn-info.active,.open .dropdown-toggle.btn-info{color:#fff;background-color:#276c81;border-color:#000}
.btn-info:active,.btn-info.active,.open .dropdown-toggle.btn-info{background-image:none}
.btn-info.disabled,.btn-info[disabled],fieldset[disabled] .btn-info,.btn-info.disabled:hover,.btn-info[disabled]:hover,fieldset[disabled] .btn-info:hover,.btn-info.disabled:focus,.btn-info[disabled]:focus,fieldset[disabled] .btn-info:focus,.btn-info.disabled:active,.btn-info[disabled]:active,fieldset[disabled] .btn-info:active,.btn-info.disabled.active,.btn-info[disabled].active,fieldset[disabled] .btn-info.active{background-color:#3186a0;border-color:#010304}
-.btn-link{color:#303030;font-weight:normal;cursor:pointer;border-radius:0}.btn-link,.btn-link:active,.btn-link[disabled],fieldset[disabled] .btn-link{background-color:transparent;-webkit-box-shadow:none;box-shadow:none}
+.btn-link{color:#5f6990;font-weight:normal;cursor:pointer;border-radius:0}.btn-link,.btn-link:active,.btn-link[disabled],fieldset[disabled] .btn-link{background-color:transparent;-webkit-box-shadow:none;box-shadow:none}
.btn-link,.btn-link:hover,.btn-link:focus,.btn-link:active{border-color:transparent}
-.btn-link:hover,.btn-link:focus{color:#0a0a0a;text-decoration:underline;background-color:transparent}
+.btn-link:hover,.btn-link:focus{color:#404862;text-decoration:underline;background-color:transparent}
.btn-link[disabled]:hover,fieldset[disabled] .btn-link:hover,.btn-link[disabled]:focus,fieldset[disabled] .btn-link:focus{color:#999;text-decoration:none}
.btn-lg{padding:8px 14px;font-size:15px;line-height:1.33;border-radius:5px}
.btn-sm,.btn-xs{padding:3px 8px;font-size:11px;line-height:1.5;border-radius:2px}
@@ -486,7 +486,7 @@
textarea.input-group-sm>.form-control,textarea.input-group-sm>.input-group-addon,textarea.input-group-sm>.input-group-btn>.btn{height:auto}
.input-group-addon,.input-group-btn,.input-group .form-control{display:table-cell}.input-group-addon:not(:first-child):not(:last-child),.input-group-btn:not(:first-child):not(:last-child),.input-group .form-control:not(:first-child):not(:last-child){border-radius:0}
.input-group-addon,.input-group-btn{width:1%;white-space:nowrap;vertical-align:middle}
-.input-group-addon{padding:4px 10px;font-size:12px;font-weight:normal;line-height:1;text-align:center;background-color:#eee;border:1px solid #aaa;border-radius:3px}.input-group-addon.input-sm{padding:3px 8px;font-size:11px;border-radius:2px}
+.input-group-addon{padding:4px 10px;font-size:12px;font-weight:normal;line-height:1;text-align:center;background-color:#eee;border:1px solid #bfbfbf;border-radius:3px}.input-group-addon.input-sm{padding:3px 8px;font-size:11px;border-radius:2px}
.input-group-addon.input-lg{padding:8px 14px;font-size:15px;border-radius:5px}
.input-group-addon input[type="radio"],.input-group-addon input[type="checkbox"]{margin-top:0}
.input-group .form-control:first-child,.input-group-addon:first-child,.input-group-btn:first-child>.btn,.input-group-btn:first-child>.dropdown-toggle,.input-group-btn:last-child>.btn:not(:last-child):not(.dropdown-toggle){border-bottom-right-radius:0;border-top-right-radius:0}
@@ -502,7 +502,7 @@
.nav:after{clear:both}
.nav>li{position:relative;display:block}.nav>li>a{position:relative;display:block;padding:4px 10px}.nav>li>a:hover,.nav>li>a:focus{text-decoration:none;background-color:#eee}
.nav>li.disabled>a{color:#999}.nav>li.disabled>a:hover,.nav>li.disabled>a:focus{color:#999;text-decoration:none;background-color:transparent;cursor:not-allowed}
-.nav .open>a,.nav .open>a:hover,.nav .open>a:focus{background-color:#eee;border-color:#303030}
+.nav .open>a,.nav .open>a:hover,.nav .open>a:focus{background-color:#eee;border-color:#5f6990}
.nav .nav-divider{height:1px;margin:7.5px 0;overflow:hidden;background-color:#e5e5e5}
.nav>li>a>img{max-width:none}
.nav-tabs{border-bottom:1px solid #bfbfbf}.nav-tabs>li{float:left;margin-bottom:-1px}.nav-tabs>li>a{margin-right:2px;line-height:1.428571429;border:1px solid transparent;border-radius:3px 3px 0 0}.nav-tabs>li>a:hover{border-color:#eee #eee #bfbfbf}
@@ -526,8 +526,8 @@
.tabbable:after{clear:both}
.tab-content>.tab-pane,.pill-content>.pill-pane{display:none}
.tab-content>.active,.pill-content>.active{display:block}
-.nav .caret{border-top-color:#303030;border-bottom-color:#303030}
-.nav a:hover .caret{border-top-color:#0a0a0a;border-bottom-color:#0a0a0a}
+.nav .caret{border-top-color:#5f6990;border-bottom-color:#5f6990}
+.nav a:hover .caret{border-top-color:#404862;border-bottom-color:#404862}
.nav-tabs .dropdown-menu{margin-top:-1px;border-top-right-radius:0;border-top-left-radius:0}
.navbar{position:relative;z-index:1000;min-height:33px;margin-bottom:17px;border:1px solid transparent}.navbar:before,.navbar:after{content:" ";display:table;}
.navbar:after{clear:both}
@@ -617,7 +617,7 @@
.badge{display:inline-block;min-width:10px;padding:3px 7px;font-size:11px;font-weight:bold;color:#fff;line-height:1;vertical-align:baseline;white-space:nowrap;text-align:center;background-color:#999;border-radius:10px}.badge:empty{display:none}
a.badge:hover,a.badge:focus{color:#fff;text-decoration:none;cursor:pointer}
.btn .badge{position:relative;top:-1px}
-a.list-group-item.active>.badge,.nav-pills>.active>a>.badge{color:#303030;background-color:#fff}
+a.list-group-item.active>.badge,.nav-pills>.active>a>.badge{color:#5f6990;background-color:#fff}
.nav-pills>li>a>.badge{margin-left:3px}
.jumbotron{padding:30px;margin-bottom:30px;font-size:18px;font-weight:200;line-height:2.1428571435;color:inherit;background-color:#eee}.jumbotron h1{line-height:1;color:inherit}
.jumbotron p{line-height:1.4}
@@ -672,7 +672,7 @@
.panel>.list-group .list-group-item:last-child{border-bottom:0}
.panel-heading+.list-group .list-group-item:first-child{border-top-width:0}
.panel>.table{margin-bottom:0}
-.panel>.panel-body+.table{border-top:1px solid #d6b161}
+.panel>.panel-body+.table{border-top:1px solid #bfbfbf}
.panel-heading{padding:10px 15px;border-bottom:1px solid transparent;border-top-right-radius:2px;border-top-left-radius:2px}
.panel-title{margin-top:0;margin-bottom:0;font-size:14px}.panel-title>a{color:inherit}
.panel-footer{padding:10px 15px;background-color:#f5f5f5;border-top:1px solid #bfbfbf;border-bottom-right-radius:2px;border-bottom-left-radius:2px}
@@ -1797,7 +1797,7 @@
select{padding:2px;font-size:12px;line-height:1.428571429}
select,input,textarea{font:inherit}
.form-row select,.form-row textarea,.form-row input[type="text"],.form-row input[type="file"],.form-row input[type="password"]{max-width:90%}
-textarea,input[type="text"],input[type="password"]{font-size:12px;line-height:1.428571429;border:1px solid #aaa;padding:3px}
+textarea,input[type="text"],input[type="password"]{font-size:12px;line-height:1.428571429;border:1px solid #bfbfbf;padding:3px}
input[type="submit"],button{display:inline-block;padding:4px 10px;margin-bottom:0;font-size:12px;font-weight:normal;line-height:1.428571429;text-align:center;vertical-align:middle;cursor:pointer;border:1px solid transparent;border-radius:3px;white-space:nowrap;-webkit-user-select:none;-moz-user-select:none;-ms-user-select:none;-o-user-select:none;user-select:none;white-space:normal;color:#333;background-color:#f2f2f2;border-color:#bfbfbf}input[type="submit"]:focus,button:focus{outline:thin dotted #333;outline:5px auto -webkit-focus-ring-color;outline-offset:-2px}
input[type="submit"]:hover,button:hover,input[type="submit"]:focus,button:focus{color:#333;text-decoration:none}
input[type="submit"]:active,button:active,input[type="submit"].active,button.active{outline:0;background-image:none;-webkit-box-shadow:inset 0 3px 5px rgba(0,0,0,0.125);box-shadow:inset 0 3px 5px rgba(0,0,0,0.125)}
@@ -1808,7 +1808,7 @@
input[type="submit"].btn-primary,button.btn-primary{color:#fff;background-color:#5f6990;border-color:#0e0f15}input[type="submit"].btn-primary:hover,button.btn-primary:hover,input[type="submit"].btn-primary:focus,button.btn-primary:focus,input[type="submit"].btn-primary:active,button.btn-primary:active,input[type="submit"].btn-primary.active,button.btn-primary.active,.open .dropdown-toggleinput[type="submit"].btn-primary,.open .dropdown-togglebutton.btn-primary{color:#fff;background-color:#4e5777;border-color:#000}
input[type="submit"].btn-primary:active,button.btn-primary:active,input[type="submit"].btn-primary.active,button.btn-primary.active,.open .dropdown-toggleinput[type="submit"].btn-primary,.open .dropdown-togglebutton.btn-primary{background-image:none}
input[type="submit"].btn-primary.disabled,button.btn-primary.disabled,input[type="submit"].btn-primary[disabled],button.btn-primary[disabled],fieldset[disabled] input[type="submit"].btn-primary,fieldset[disabled] button.btn-primary,input[type="submit"].btn-primary.disabled:hover,button.btn-primary.disabled:hover,input[type="submit"].btn-primary[disabled]:hover,button.btn-primary[disabled]:hover,fieldset[disabled] input[type="submit"].btn-primary:hover,fieldset[disabled] button.btn-primary:hover,input[type="submit"].btn-primary.disabled:focus,button.btn-primary.disabled:focus,input[type="submit"].btn-primary[disabled]:focus,button.btn-primary[disabled]:focus,fieldset[disabled] input[type="submit"].btn-primary:focus,fieldset[disabled] button.btn-primary:focus,input[type="submit"].btn-primary.disabled:active,button.btn-primary.disabled:active,input[type="submit"].btn-primary[disabled]:active,button.btn-primary[disabled]:active,fieldset[disabled] input[type="submit"].btn-primary:active,fieldset[disabled] button.btn-primary:active,input[type="submit"].btn-primary.disabled.active,button.btn-primary.disabled.active,input[type="submit"].btn-primary[disabled].active,button.btn-primary[disabled].active,fieldset[disabled] input[type="submit"].btn-primary.active,fieldset[disabled] button.btn-primary.active{background-color:#5f6990;border-color:#0e0f15}
-.search-query{display:inline-block;padding:4px;font-size:12px;line-height:1.428571429;color:#555;border:1px solid #aaa;padding-left:14px !important;padding-right:14px;margin-bottom:0;-webkit-border-radius:14px;-moz-border-radius:14px;border-radius:14px;max-width:auto}
+.search-query{display:inline-block;padding:4px;font-size:12px;line-height:1.428571429;color:#555;border:1px solid #bfbfbf;padding-left:14px !important;padding-right:14px;margin-bottom:0;-webkit-border-radius:14px;-moz-border-radius:14px;border-radius:14px;max-width:auto}
.search-query:focus{border-color:rgba(24,132,218,0.8);-webkit-box-shadow:inset 0 1px 1px rgba(0,0,0,0.075),0 0 8px rgba(82,168,236,0.6);box-shadow:inset 0 1px 1px rgba(0,0,0,0.075),0 0 8px rgba(82,168,236,0.6);outline:0;outline:thin dotted \9;}
.search-spinner{position:absolute;display:none;right:6px;top:9px}
#search-clear-btn{position:absolute;right:6px;top:9px;display:block;font-size:1.4em !important;text-decoration:none;color:#888;display:inline-block;font:normal normal normal 14px/1 FontAwesome;font-size:inherit;text-rendering:auto;-moz-osx-font-smoothing:grayscale;font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale}#search-clear-btn:before{content:"\f057"}
@@ -1849,9 +1849,9 @@
table.tabletip th{white-space:nowrap;border-bottom:1px solid #444;padding-right:3px}
table.tabletip td{border-bottom:1px solid #ddd}
table.tabletip tbody tr:hover td{background-color:#eee}
-table.colored{border-top:solid #d6b161 1px;border-bottom:solid #d6b161 1px}
+table.colored{border-top:solid #bfbfbf 1px;border-bottom:solid #bfbfbf 1px}
table.colored td,table.colored th{text-align:left;padding:5px;line-height:1.428571429}
-table.colored tr.header{background:#ebd9b2;color:#000;background-repeat:repeat-x;background-position:top;border-bottom:solid #d6b161 1px;font-weight:bold}
+table.colored tr.header{background:#ebd9b2;color:#000;background-repeat:repeat-x;background-position:top;border-bottom:solid #bfbfbf 1px;font-weight:bold}
table.colored tr{background:#fff}
table.colored tr.odd_row{background:#f9f9f9}
div.debug{margin:10px;padding:5px;background:#FFFF99;border:solid #FFFF33 1px;color:black}
@@ -1862,7 +1862,7 @@
.grid tbody td,.ui-table tbody td,.ui-table-plain tbody td{line-height:1.428571429;border-top:solid #DDDDDD 1px;border-bottom:solid #DDDDDD 1px;padding:5px}
.grid tbody td:empty{padding:0}
.grid thead tr{height:2em}
-.grid thead th{line-height:1.428571429;background:#ebd9b2;color:#000;border-top:solid #d6b161 1px;border-bottom:solid #d6b161 1px;padding:5px;text-align:left;white-space:nowrap}
+.grid thead th{line-height:1.428571429;background:#ebd9b2;color:#000;border-top:solid #bfbfbf 1px;border-bottom:solid #bfbfbf 1px;padding:5px;text-align:left;white-space:nowrap}
.grid tfoot td{background-color:#F8F8F8;border-top:solid #DDDDDD 1px;border-bottom:solid #DDDDDD 1px;padding:5px}
.grid .current{background-color:#EEEEFF}
.count-box{min-width:1.1em;padding:5px;border-width:1px;border-style:solid;text-align:center;display:inline-block}
@@ -2203,7 +2203,7 @@
.collection-creator .footer .actions .other-options>*{display:none;margin-left:4px}
.search-input .search-query{width:100%;padding-right:24px}
.search-input .search-clear,.search-input .search-loading{position:relative;display:inline-block;float:right;margin-top:-24px;margin-right:4px;font-size:1.4em;line-height:23px;color:grey}
-.search-input .search-clear:hover{color:#303030}
+.search-input .search-clear:hover{color:#5f6990}
.dataset-choice{border:1px solid lightgrey;border-radius:3px;overflow:hidden;padding:10px 8px 8px 8px}.dataset-choice:hover{border-color:black;cursor:pointer}.dataset-choice:hover>*{cursor:pointer}
.dataset-choice .prompt{margin-right:8px}.dataset-choice .prompt:after{content:':'}
.dataset-choice .prompt:empty{display:none}
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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commit/galaxy-central: guerler: ToolForm: Try new data selector style
by commits-noreply＠bitbucket.org 07 Feb '15
by commits-noreply＠bitbucket.org 07 Feb '15
07 Feb '15
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/54ed3adb6575/
Changeset: 54ed3adb6575
User: guerler
Date: 2015-02-07 00:09:53+00:00
Summary: ToolForm: Try new data selector style
Affected #: 11 files
diff -r 12f6e12d91c9756154235c9e75436476a2821fe5 -r 54ed3adb6575addba47d627944ebd72f7547082d client/galaxy/scripts/mvc/tools/tools-select-content.js
--- a/client/galaxy/scripts/mvc/tools/tools-select-content.js
+++ b/client/galaxy/scripts/mvc/tools/tools-select-content.js
@@ -7,19 +7,19 @@
// link app and options
this.app = app;
this.options = options;
-
+
// link this
var self = this;
-
+
// add element
- this.setElement('<div/>');
-
+ this.setElement('<div class="ui-select-content"/>');
+
// list of select fields
this.list = {};
-
+
// radio button options
var radio_buttons = [];
-
+
// identify selector type
if (options.type == 'data_collection') {
this.mode = 'collection';
@@ -30,11 +30,11 @@
this.mode = 'single';
}
}
-
+
// set initial state
this.current = this.mode;
this.list = {};
-
+
// error messages
var extensions = Utils.textify(options.extensions);
var hda_error = 'No dataset available.';
@@ -45,10 +45,10 @@
if (extensions) {
hdca_error = 'No ' + extensions + ' dataset collection available.';
}
-
+
// add single dataset selector
if (this.mode == 'single') {
- radio_buttons.push({icon: 'fa-file-o', label : 'Single dataset', value : 'single'});
+ radio_buttons.push({icon: 'fa-file-o', label : '', value : 'single'});
this.select_single = new Ui.Select.View({
optional : options.optional,
error_text : hda_error,
@@ -61,10 +61,10 @@
type : 'hda'
};
}
-
+
// add multiple dataset selector
if (this.mode == 'single' || this.mode == 'multiple') {
- radio_buttons.push({icon: 'fa-files-o', label : 'Multiple datasets', value : 'multiple' });
+ radio_buttons.push({icon: 'fa-files-o', label : '', value : 'multiple' });
this.select_multiple = new Ui.Select.View({
multiple : true,
error_text : hda_error,
@@ -77,10 +77,10 @@
type : 'hda'
};
}
-
+
// add collection selector
if (this.mode == 'single' || this.mode == 'collection') {
- radio_buttons.push({icon: 'fa-folder-o', label : 'Dataset collection', value : 'collection' });
+ radio_buttons.push({icon: 'fa-folder-o', label : '', value : 'collection' });
this.select_collection = new Ui.Select.View({
error_text : hdca_error,
optional : options.optional,
@@ -93,7 +93,7 @@
type : 'hdca'
};
}
-
+
// create button
this.button_type = new Ui.RadioButton.View({
value : this.current,
@@ -104,30 +104,37 @@
self.trigger('change');
}
});
-
+
// add batch mode information
this.$batch = $(ToolTemplate.batchMode());
-
+
+ // calculate button width (should be placed into css once its supported)
+ var button_width = (_.size(this.list) - 1) * 60 + 'px';
+
// add elements to dom
if (_.size(this.list) > 1) {
- this.$el.append(this.button_type.$el.addClass('ui-margin-bottom'));
+ this.$el.append(this.button_type.$el);
}
for (var i in this.list) {
- this.$el.append(this.list[i].field.$el);
+ this.$el.append(this.list[i].field.$el.css({
+ 'margin-left': button_width
+ }));
}
- this.$el.append(this.$batch);
-
+ this.$el.append(this.$batch.css({
+ 'margin-left': button_width
+ }));
+
// update options
this.update(options.data);
-
+
// set initial value
if (this.options.value !== undefined) {
this.value(this.options.value);
}
-
+
// refresh view
this.refresh();
-
+
// add change event. fires on trigger
this.on('change', function() {
if (options.onchange) {
@@ -135,21 +142,21 @@
}
});
},
-
+
/** Indicate that select fields are being updated */
wait: function() {
for (var i in this.list) {
this.list[i].field.wait();
}
},
-
+
/** Indicate that the options update has been completed */
unwait: function() {
for (var i in this.list) {
this.list[i].field.unwait();
}
},
-
+
/** Update content selector */
update: function(options) {
// identify dataset options
@@ -161,7 +168,7 @@
value: hda.id
});
}
-
+
// identify collection options
var collection_options = [];
for (var i in options.hdca) {
@@ -171,16 +178,16 @@
value: hdca.id
});
}
-
+
// update selection fields
this.select_single && this.select_single.update(dataset_options);
this.select_multiple && this.select_multiple.update(dataset_options);
this.select_collection && this.select_collection.update(collection_options);
-
+
// add to content list
this.app.content.add(options);
},
-
+
/** Return the currently selected dataset values */
value : function (new_value) {
// update current value
@@ -216,19 +223,19 @@
}
this.refresh();
}
-
+
// transform into an array
var id_list = this._select().value();
if (!(id_list instanceof Array)) {
id_list = [id_list];
}
-
+
// prepare result dict
var result = {
batch : this.mode == 'single' && this.current != 'single',
values : []
}
-
+
// append to dataset ids
for (var i in id_list) {
result.values.push({
@@ -236,17 +243,17 @@
src : this.list[this.current].type
});
}
-
+
// return
return result;
},
-
+
/** Validate current selection
*/
validate: function() {
return this._select().validate();
},
-
+
/** Refreshes data selection view */
refresh: function() {
this.button_type.value(this.current);
@@ -264,7 +271,7 @@
this.$batch.hide();
}
},
-
+
/** Assists in selecting the current field */
_select: function() {
return this.list[this.current].field;
diff -r 12f6e12d91c9756154235c9e75436476a2821fe5 -r 54ed3adb6575addba47d627944ebd72f7547082d client/galaxy/scripts/mvc/ui/ui-drilldown.js
--- a/client/galaxy/scripts/mvc/ui/ui-drilldown.js
+++ b/client/galaxy/scripts/mvc/ui/ui-drilldown.js
@@ -90,7 +90,7 @@
/** Template for drill down view
*/
_template: function(options) {
- return '<div class="ui-options drilldown-container" id="' + options.id + '"/>';
+ return '<div class="ui-options-input drilldown-container" id="' + options.id + '"/>';
}
});
diff -r 12f6e12d91c9756154235c9e75436476a2821fe5 -r 54ed3adb6575addba47d627944ebd72f7547082d client/galaxy/scripts/mvc/ui/ui-options.js
--- a/client/galaxy/scripts/mvc/ui/ui-options.js
+++ b/client/galaxy/scripts/mvc/ui/ui-options.js
@@ -18,7 +18,7 @@
this.options = Utils.merge(options, this.optionsDefault);
// create new element
- this.setElement('<div/>');
+ this.setElement('<div class="ui-options"/>');
// create elements
this.$message = $('<div/>');
@@ -221,7 +221,7 @@
/** Main template function
*/
_template: function() {
- return '<div class="ui-options"/>';
+ return '<div class="ui-options-input"/>';
}
});
diff -r 12f6e12d91c9756154235c9e75436476a2821fe5 -r 54ed3adb6575addba47d627944ebd72f7547082d static/scripts/mvc/tools/tools-select-content.js
--- a/static/scripts/mvc/tools/tools-select-content.js
+++ b/static/scripts/mvc/tools/tools-select-content.js
@@ -7,19 +7,19 @@
// link app and options
this.app = app;
this.options = options;
-
+
// link this
var self = this;
-
+
// add element
- this.setElement('<div/>');
-
+ this.setElement('<div class="ui-select-content"/>');
+
// list of select fields
this.list = {};
-
+
// radio button options
var radio_buttons = [];
-
+
// identify selector type
if (options.type == 'data_collection') {
this.mode = 'collection';
@@ -30,11 +30,11 @@
this.mode = 'single';
}
}
-
+
// set initial state
this.current = this.mode;
this.list = {};
-
+
// error messages
var extensions = Utils.textify(options.extensions);
var hda_error = 'No dataset available.';
@@ -45,10 +45,10 @@
if (extensions) {
hdca_error = 'No ' + extensions + ' dataset collection available.';
}
-
+
// add single dataset selector
if (this.mode == 'single') {
- radio_buttons.push({icon: 'fa-file-o', label : 'Single dataset', value : 'single'});
+ radio_buttons.push({icon: 'fa-file-o', label : '', value : 'single'});
this.select_single = new Ui.Select.View({
optional : options.optional,
error_text : hda_error,
@@ -61,10 +61,10 @@
type : 'hda'
};
}
-
+
// add multiple dataset selector
if (this.mode == 'single' || this.mode == 'multiple') {
- radio_buttons.push({icon: 'fa-files-o', label : 'Multiple datasets', value : 'multiple' });
+ radio_buttons.push({icon: 'fa-files-o', label : '', value : 'multiple' });
this.select_multiple = new Ui.Select.View({
multiple : true,
error_text : hda_error,
@@ -77,10 +77,10 @@
type : 'hda'
};
}
-
+
// add collection selector
if (this.mode == 'single' || this.mode == 'collection') {
- radio_buttons.push({icon: 'fa-folder-o', label : 'Dataset collection', value : 'collection' });
+ radio_buttons.push({icon: 'fa-folder-o', label : '', value : 'collection' });
this.select_collection = new Ui.Select.View({
error_text : hdca_error,
optional : options.optional,
@@ -93,7 +93,7 @@
type : 'hdca'
};
}
-
+
// create button
this.button_type = new Ui.RadioButton.View({
value : this.current,
@@ -104,30 +104,37 @@
self.trigger('change');
}
});
-
+
// add batch mode information
this.$batch = $(ToolTemplate.batchMode());
-
+
+ // calculate button width (should be placed into css once its supported)
+ var button_width = (_.size(this.list) - 1) * 60 + 'px';
+
// add elements to dom
if (_.size(this.list) > 1) {
- this.$el.append(this.button_type.$el.addClass('ui-margin-bottom'));
+ this.$el.append(this.button_type.$el);
}
for (var i in this.list) {
- this.$el.append(this.list[i].field.$el);
+ this.$el.append(this.list[i].field.$el.css({
+ 'margin-left': button_width
+ }));
}
- this.$el.append(this.$batch);
-
+ this.$el.append(this.$batch.css({
+ 'margin-left': button_width
+ }));
+
// update options
this.update(options.data);
-
+
// set initial value
if (this.options.value !== undefined) {
this.value(this.options.value);
}
-
+
// refresh view
this.refresh();
-
+
// add change event. fires on trigger
this.on('change', function() {
if (options.onchange) {
@@ -135,21 +142,21 @@
}
});
},
-
+
/** Indicate that select fields are being updated */
wait: function() {
for (var i in this.list) {
this.list[i].field.wait();
}
},
-
+
/** Indicate that the options update has been completed */
unwait: function() {
for (var i in this.list) {
this.list[i].field.unwait();
}
},
-
+
/** Update content selector */
update: function(options) {
// identify dataset options
@@ -161,7 +168,7 @@
value: hda.id
});
}
-
+
// identify collection options
var collection_options = [];
for (var i in options.hdca) {
@@ -171,16 +178,16 @@
value: hdca.id
});
}
-
+
// update selection fields
this.select_single && this.select_single.update(dataset_options);
this.select_multiple && this.select_multiple.update(dataset_options);
this.select_collection && this.select_collection.update(collection_options);
-
+
// add to content list
this.app.content.add(options);
},
-
+
/** Return the currently selected dataset values */
value : function (new_value) {
// update current value
@@ -216,19 +223,19 @@
}
this.refresh();
}
-
+
// transform into an array
var id_list = this._select().value();
if (!(id_list instanceof Array)) {
id_list = [id_list];
}
-
+
// prepare result dict
var result = {
batch : this.mode == 'single' && this.current != 'single',
values : []
}
-
+
// append to dataset ids
for (var i in id_list) {
result.values.push({
@@ -236,17 +243,17 @@
src : this.list[this.current].type
});
}
-
+
// return
return result;
},
-
+
/** Validate current selection
*/
validate: function() {
return this._select().validate();
},
-
+
/** Refreshes data selection view */
refresh: function() {
this.button_type.value(this.current);
@@ -264,7 +271,7 @@
this.$batch.hide();
}
},
-
+
/** Assists in selecting the current field */
_select: function() {
return this.list[this.current].field;
diff -r 12f6e12d91c9756154235c9e75436476a2821fe5 -r 54ed3adb6575addba47d627944ebd72f7547082d static/scripts/mvc/ui/ui-drilldown.js
--- a/static/scripts/mvc/ui/ui-drilldown.js
+++ b/static/scripts/mvc/ui/ui-drilldown.js
@@ -90,7 +90,7 @@
/** Template for drill down view
*/
_template: function(options) {
- return '<div class="ui-options drilldown-container" id="' + options.id + '"/>';
+ return '<div class="ui-options-input drilldown-container" id="' + options.id + '"/>';
}
});
diff -r 12f6e12d91c9756154235c9e75436476a2821fe5 -r 54ed3adb6575addba47d627944ebd72f7547082d static/scripts/mvc/ui/ui-options.js
--- a/static/scripts/mvc/ui/ui-options.js
+++ b/static/scripts/mvc/ui/ui-options.js
@@ -18,7 +18,7 @@
this.options = Utils.merge(options, this.optionsDefault);
// create new element
- this.setElement('<div/>');
+ this.setElement('<div class="ui-options"/>');
// create elements
this.$message = $('<div/>');
@@ -221,7 +221,7 @@
/** Main template function
*/
_template: function() {
- return '<div class="ui-options"/>';
+ return '<div class="ui-options-input"/>';
}
});
diff -r 12f6e12d91c9756154235c9e75436476a2821fe5 -r 54ed3adb6575addba47d627944ebd72f7547082d static/scripts/packed/mvc/tools/tools-select-content.js
--- a/static/scripts/packed/mvc/tools/tools-select-content.js
+++ b/static/scripts/packed/mvc/tools/tools-select-content.js
@@ -1,1 +1,1 @@
-define(["utils/utils","mvc/ui/ui-misc","mvc/ui/ui-tabs","mvc/tools/tools-template"],function(c,e,b,a){var d=Backbone.View.extend({initialize:function(l,g){this.app=l;this.options=g;var f=this;this.setElement("<div/>");this.list={};var j=[];if(g.type=="data_collection"){this.mode="collection"}else{if(g.multiple){this.mode="multiple"}else{this.mode="single"}}this.current=this.mode;this.list={};var k=c.textify(g.extensions);var n="No dataset available.";if(k){n="No "+k+" dataset available."}var m="No dataset list available.";if(k){m="No "+k+" dataset collection available."}if(this.mode=="single"){j.push({icon:"fa-file-o",label:"Single dataset",value:"single"});this.select_single=new e.Select.View({optional:g.optional,error_text:n,onchange:function(){f.trigger("change")}});this.list.single={field:this.select_single,type:"hda"}}if(this.mode=="single"||this.mode=="multiple"){j.push({icon:"fa-files-o",label:"Multiple datasets",value:"multiple"});this.select_multiple=new e.Select.View({multiple:true,error_text:n,onchange:function(){f.trigger("change")}});this.list.multiple={field:this.select_multiple,type:"hda"}}if(this.mode=="single"||this.mode=="collection"){j.push({icon:"fa-folder-o",label:"Dataset collection",value:"collection"});this.select_collection=new e.Select.View({error_text:m,optional:g.optional,onchange:function(){f.trigger("change")}});this.list.collection={field:this.select_collection,type:"hdca"}}this.button_type=new e.RadioButton.View({value:this.current,data:j,onchange:function(i){f.current=i;f.refresh();f.trigger("change")}});this.$batch=$(a.batchMode());if(_.size(this.list)>1){this.$el.append(this.button_type.$el.addClass("ui-margin-bottom"))}for(var h in this.list){this.$el.append(this.list[h].field.$el)}this.$el.append(this.$batch);this.update(g.data);if(this.options.value!==undefined){this.value(this.options.value)}this.refresh();this.on("change",function(){if(g.onchange){g.onchange(f.value())}})},wait:function(){for(var f in this.list){this.list[f].field.wait()}},unwait:function(){for(var f in this.list){this.list[f].field.unwait()}},update:function(g){var l=[];for(var j in g.hda){var k=g.hda[j];l.push({label:k.hid+": "+k.name,value:k.id})}var f=[];for(var j in g.hdca){var h=g.hdca[j];f.push({label:h.hid+": "+h.name,value:h.id})}this.select_single&&this.select_single.update(l);this.select_multiple&&this.select_multiple.update(l);this.select_collection&&this.select_collection.update(f);this.app.content.add(g)},value:function(h){if(h!==undefined){if(h&&h.values){try{var l=[];for(var g in h.values){l.push(h.values[g].id)}if(h&&h.values.length>0&&h.values[0].src=="hcda"){this.current="collection";this.select_collection.value(l[0])}else{if(this.mode=="multiple"){this.current="multiple";this.select_multiple.value(l)}else{this.current="single";this.select_single.value(l[0])}}}catch(k){console.debug("tools-select-content::value() - Skipped.")}}else{this.select_single&&this.select_single.value("__null__");this.select_multiple&&this.select_multiple.value("__null__");this.select_collection&&this.select_collection.value("__null__")}this.refresh()}var j=this._select().value();if(!(j instanceof Array)){j=[j]}var f={batch:this.mode=="single"&&this.current!="single",values:[]};for(var g in j){f.values.push({id:j[g],src:this.list[this.current].type})}return f},validate:function(){return this._select().validate()},refresh:function(){this.button_type.value(this.current);for(var g in this.list){var f=this.list[g].field.$el;if(this.current==g){f.show()}else{f.hide()}}if(this.mode=="single"&&this.current!="single"){this.$batch.show()}else{this.$batch.hide()}},_select:function(){return this.list[this.current].field}});return{View:d}});
\ No newline at end of file
+define(["utils/utils","mvc/ui/ui-misc","mvc/ui/ui-tabs","mvc/tools/tools-template"],function(c,e,b,a){var d=Backbone.View.extend({initialize:function(f,o){this.app=f;this.options=o;var n=this;this.setElement('<div class="ui-select-content"/>');this.list={};var l=[];if(o.type=="data_collection"){this.mode="collection"}else{if(o.multiple){this.mode="multiple"}else{this.mode="single"}}this.current=this.mode;this.list={};var j=c.textify(o.extensions);var h="No dataset available.";if(j){h="No "+j+" dataset available."}var k="No dataset list available.";if(j){k="No "+j+" dataset collection available."}if(this.mode=="single"){l.push({icon:"fa-file-o",label:"",value:"single"});this.select_single=new e.Select.View({optional:o.optional,error_text:h,onchange:function(){n.trigger("change")}});this.list.single={field:this.select_single,type:"hda"}}if(this.mode=="single"||this.mode=="multiple"){l.push({icon:"fa-files-o",label:"",value:"multiple"});this.select_multiple=new e.Select.View({multiple:true,error_text:h,onchange:function(){n.trigger("change")}});this.list.multiple={field:this.select_multiple,type:"hda"}}if(this.mode=="single"||this.mode=="collection"){l.push({icon:"fa-folder-o",label:"",value:"collection"});this.select_collection=new e.Select.View({error_text:k,optional:o.optional,onchange:function(){n.trigger("change")}});this.list.collection={field:this.select_collection,type:"hdca"}}this.button_type=new e.RadioButton.View({value:this.current,data:l,onchange:function(i){n.current=i;n.refresh();n.trigger("change")}});this.$batch=$(a.batchMode());var m=(_.size(this.list)-1)*60+"px";if(_.size(this.list)>1){this.$el.append(this.button_type.$el)}for(var g in this.list){this.$el.append(this.list[g].field.$el.css({"margin-left":m}))}this.$el.append(this.$batch.css({"margin-left":m}));this.update(o.data);if(this.options.value!==undefined){this.value(this.options.value)}this.refresh();this.on("change",function(){if(o.onchange){o.onchange(n.value())}})},wait:function(){for(var f in this.list){this.list[f].field.wait()}},unwait:function(){for(var f in this.list){this.list[f].field.unwait()}},update:function(g){var l=[];for(var j in g.hda){var k=g.hda[j];l.push({label:k.hid+": "+k.name,value:k.id})}var f=[];for(var j in g.hdca){var h=g.hdca[j];f.push({label:h.hid+": "+h.name,value:h.id})}this.select_single&&this.select_single.update(l);this.select_multiple&&this.select_multiple.update(l);this.select_collection&&this.select_collection.update(f);this.app.content.add(g)},value:function(h){if(h!==undefined){if(h&&h.values){try{var l=[];for(var g in h.values){l.push(h.values[g].id)}if(h&&h.values.length>0&&h.values[0].src=="hcda"){this.current="collection";this.select_collection.value(l[0])}else{if(this.mode=="multiple"){this.current="multiple";this.select_multiple.value(l)}else{this.current="single";this.select_single.value(l[0])}}}catch(k){console.debug("tools-select-content::value() - Skipped.")}}else{this.select_single&&this.select_single.value("__null__");this.select_multiple&&this.select_multiple.value("__null__");this.select_collection&&this.select_collection.value("__null__")}this.refresh()}var j=this._select().value();if(!(j instanceof Array)){j=[j]}var f={batch:this.mode=="single"&&this.current!="single",values:[]};for(var g in j){f.values.push({id:j[g],src:this.list[this.current].type})}return f},validate:function(){return this._select().validate()},refresh:function(){this.button_type.value(this.current);for(var g in this.list){var f=this.list[g].field.$el;if(this.current==g){f.show()}else{f.hide()}}if(this.mode=="single"&&this.current!="single"){this.$batch.show()}else{this.$batch.hide()}},_select:function(){return this.list[this.current].field}});return{View:d}});
\ No newline at end of file
diff -r 12f6e12d91c9756154235c9e75436476a2821fe5 -r 54ed3adb6575addba47d627944ebd72f7547082d static/scripts/packed/mvc/ui/ui-drilldown.js
--- a/static/scripts/packed/mvc/ui/ui-drilldown.js
+++ b/static/scripts/packed/mvc/ui/ui-drilldown.js
@@ -1,1 +1,1 @@
-define(["utils/utils","mvc/ui/ui-options"],function(b,a){var c=a.Base.extend({initialize:function(d){this.display=d.display||"checkbox";d.multiple=(this.display=="checkbox");a.Base.prototype.initialize.call(this,d)},_templateOption:function(d,f,e){return'<div><input name="'+this.options.id+'" class="ui-option" type="'+this.display+'" value="'+f+'">'+d+"<div/>"},_templateOptions:function(f){var e=this;function g(k,l){function j(m){if(m){l.fadeIn("fast");k.removeClass("toggle-expand");k.addClass("toggle");k.is_expanded=true}else{l.hide();k.removeClass("toggle");k.addClass("toggle-expand");k.is_expanded=false}}k.on("click",function(){j(!k.is_expanded)})}function d(p,k){for(i in k){var q=k[i];var m=q.options.length>0;var l=$("<div/>");if(m){var n=$('<span class="ui-drilldown-button form-toggle icon-button toggle-expand" style="position: relative; top: 2px;"/>');var j=$("<div/>");j.append(n);j.append(e._templateOption(q.name,q.value));l.append(j);var o=$('<div style="display: none; margin-left: 25px;"/>');d(o,q.options);l.append(o);g(n,o)}else{l.append(e._templateOption(q.name,q.value))}p.append(l)}}var h=$("<div/>");d(h,f);return h},_template:function(d){return'<div class="ui-options drilldown-container" id="'+d.id+'"/>'}});return{View:c}});
\ No newline at end of file
+define(["utils/utils","mvc/ui/ui-options"],function(b,a){var c=a.Base.extend({initialize:function(d){this.display=d.display||"checkbox";d.multiple=(this.display=="checkbox");a.Base.prototype.initialize.call(this,d)},_templateOption:function(d,f,e){return'<div><input name="'+this.options.id+'" class="ui-option" type="'+this.display+'" value="'+f+'">'+d+"<div/>"},_templateOptions:function(f){var e=this;function g(k,l){function j(m){if(m){l.fadeIn("fast");k.removeClass("toggle-expand");k.addClass("toggle");k.is_expanded=true}else{l.hide();k.removeClass("toggle");k.addClass("toggle-expand");k.is_expanded=false}}k.on("click",function(){j(!k.is_expanded)})}function d(p,k){for(i in k){var q=k[i];var m=q.options.length>0;var l=$("<div/>");if(m){var n=$('<span class="ui-drilldown-button form-toggle icon-button toggle-expand" style="position: relative; top: 2px;"/>');var j=$("<div/>");j.append(n);j.append(e._templateOption(q.name,q.value));l.append(j);var o=$('<div style="display: none; margin-left: 25px;"/>');d(o,q.options);l.append(o);g(n,o)}else{l.append(e._templateOption(q.name,q.value))}p.append(l)}}var h=$("<div/>");d(h,f);return h},_template:function(d){return'<div class="ui-options-input drilldown-container" id="'+d.id+'"/>'}});return{View:c}});
\ No newline at end of file
diff -r 12f6e12d91c9756154235c9e75436476a2821fe5 -r 54ed3adb6575addba47d627944ebd72f7547082d static/scripts/packed/mvc/ui/ui-options.js
--- a/static/scripts/packed/mvc/ui/ui-options.js
+++ b/static/scripts/packed/mvc/ui/ui-options.js
@@ -1,1 +1,1 @@
-define(["utils/utils"],function(b){var a=Backbone.View.extend({initialize:function(g){this.optionsDefault={visible:true,data:[],id:b.uuid(),error_text:"No data available.",wait_text:"Please wait..."};this.options=b.merge(g,this.optionsDefault);this.setElement("<div/>");this.$message=$("<div/>");this.$options=$(this._template(g));this.$el.append(this.$message);this.$el.append(this.$options);if(!this.options.visible){this.$el.hide()}this.update(this.options.data);if(this.options.value!==undefined){this.value(this.options.value)}var f=this;this.on("change",function(){f._change()})},update:function(g){var j=this._getValue();this.$options.empty();if(this._templateOptions){this.$options.append(this._templateOptions(g))}else{for(var h in g){var i=$(this._templateOption(g[h]));i.addClass("ui-option");this.$options.append(i)}}var f=this;this.$el.find("input").on("change",function(){f.value(f._getValue());f._change()});this._refresh();this.value(j)},value:function(g){if(g!==undefined){if(!(g instanceof Array)){g=[g]}this.$el.find("input").prop("checked",false);for(var f in g){this.$el.find('input[value="'+g[f]+'"]').first().prop("checked",true)}}return this._getValue()},exists:function(g){if(g!==undefined){if(!(g instanceof Array)){g=[g]}for(var f in g){if(this.$el.find('input[value="'+g[f]+'"]').length>0){return true}}}return false},first:function(){var f=this.$el.find("input");if(f.length>0){return f.val()}else{return undefined}},validate:function(){return b.validate(this.value())},wait:function(){if(this._size()==0){this._messageShow(this.options.wait_text,"info");this.$options.hide()}},unwait:function(){this._messageHide();this._refresh()},_change:function(){if(this.options.onchange){this.options.onchange(this._getValue())}},_refresh:function(){if(this._size()==0){this._messageShow(this.options.error_text,"danger");this.$options.hide()}else{this._messageHide();this.$options.css("display","inline-block")}},_getValue:function(){var g=this.$el.find(":checked");if(g.length==0){return"__null__"}if(this.options.multiple){var f=[];g.each(function(){f.push($(this).val())});return f}else{return g.val()}},_size:function(){return this.$el.find(".ui-option").length},_messageShow:function(g,f){this.$message.show();this.$message.removeClass();this.$message.addClass("ui-message alert alert-"+f);this.$message.html(g)},_messageHide:function(){this.$message.hide()},_template:function(){return'<div class="ui-options"/>'}});var d={};d.View=a.extend({initialize:function(f){a.prototype.initialize.call(this,f)},_templateOption:function(f){return'<div><input type="radio" name="'+this.options.id+'" value="'+f.value+'"/>'+f.label+"<br></div>"}});var c={};c.View=a.extend({initialize:function(f){f.multiple=true;a.prototype.initialize.call(this,f)},_templateOption:function(f){return'<div><input type="checkbox" name="'+this.options.id+'" value="'+f.value+'"/>'+f.label+"<br></div>"}});var e={};e.View=a.extend({initialize:function(f){a.prototype.initialize.call(this,f)},value:function(f){if(f!==undefined){this.$el.find("input").prop("checked",false);this.$el.find("label").removeClass("active");this.$el.find('[value="'+f+'"]').prop("checked",true).closest("label").addClass("active")}return this._getValue()},_templateOption:function(g){var f='<label class="btn btn-default">';if(g.icon){f+='<i class="fa '+g.icon+'"/>'}f+='<input type="radio" name="'+this.options.id+'" value="'+g.value+'">'+g.label+"</label>";return f},_template:function(){return'<div class="btn-group ui-radiobutton" data-toggle="buttons"/>'}});return{Base:a,Radio:d,RadioButton:e,Checkbox:c}});
\ No newline at end of file
+define(["utils/utils"],function(b){var a=Backbone.View.extend({initialize:function(g){this.optionsDefault={visible:true,data:[],id:b.uuid(),error_text:"No data available.",wait_text:"Please wait..."};this.options=b.merge(g,this.optionsDefault);this.setElement('<div class="ui-options"/>');this.$message=$("<div/>");this.$options=$(this._template(g));this.$el.append(this.$message);this.$el.append(this.$options);if(!this.options.visible){this.$el.hide()}this.update(this.options.data);if(this.options.value!==undefined){this.value(this.options.value)}var f=this;this.on("change",function(){f._change()})},update:function(g){var j=this._getValue();this.$options.empty();if(this._templateOptions){this.$options.append(this._templateOptions(g))}else{for(var h in g){var i=$(this._templateOption(g[h]));i.addClass("ui-option");this.$options.append(i)}}var f=this;this.$el.find("input").on("change",function(){f.value(f._getValue());f._change()});this._refresh();this.value(j)},value:function(g){if(g!==undefined){if(!(g instanceof Array)){g=[g]}this.$el.find("input").prop("checked",false);for(var f in g){this.$el.find('input[value="'+g[f]+'"]').first().prop("checked",true)}}return this._getValue()},exists:function(g){if(g!==undefined){if(!(g instanceof Array)){g=[g]}for(var f in g){if(this.$el.find('input[value="'+g[f]+'"]').length>0){return true}}}return false},first:function(){var f=this.$el.find("input");if(f.length>0){return f.val()}else{return undefined}},validate:function(){return b.validate(this.value())},wait:function(){if(this._size()==0){this._messageShow(this.options.wait_text,"info");this.$options.hide()}},unwait:function(){this._messageHide();this._refresh()},_change:function(){if(this.options.onchange){this.options.onchange(this._getValue())}},_refresh:function(){if(this._size()==0){this._messageShow(this.options.error_text,"danger");this.$options.hide()}else{this._messageHide();this.$options.css("display","inline-block")}},_getValue:function(){var g=this.$el.find(":checked");if(g.length==0){return"__null__"}if(this.options.multiple){var f=[];g.each(function(){f.push($(this).val())});return f}else{return g.val()}},_size:function(){return this.$el.find(".ui-option").length},_messageShow:function(g,f){this.$message.show();this.$message.removeClass();this.$message.addClass("ui-message alert alert-"+f);this.$message.html(g)},_messageHide:function(){this.$message.hide()},_template:function(){return'<div class="ui-options-input"/>'}});var d={};d.View=a.extend({initialize:function(f){a.prototype.initialize.call(this,f)},_templateOption:function(f){return'<div><input type="radio" name="'+this.options.id+'" value="'+f.value+'"/>'+f.label+"<br></div>"}});var c={};c.View=a.extend({initialize:function(f){f.multiple=true;a.prototype.initialize.call(this,f)},_templateOption:function(f){return'<div><input type="checkbox" name="'+this.options.id+'" value="'+f.value+'"/>'+f.label+"<br></div>"}});var e={};e.View=a.extend({initialize:function(f){a.prototype.initialize.call(this,f)},value:function(f){if(f!==undefined){this.$el.find("input").prop("checked",false);this.$el.find("label").removeClass("active");this.$el.find('[value="'+f+'"]').prop("checked",true).closest("label").addClass("active")}return this._getValue()},_templateOption:function(g){var f='<label class="btn btn-default">';if(g.icon){f+='<i class="fa '+g.icon+'"/>'}f+='<input type="radio" name="'+this.options.id+'" value="'+g.value+'">'+g.label+"</label>";return f},_template:function(){return'<div class="btn-group ui-radiobutton" data-toggle="buttons"/>'}});return{Base:a,Radio:d,RadioButton:e,Checkbox:c}});
\ No newline at end of file
diff -r 12f6e12d91c9756154235c9e75436476a2821fe5 -r 54ed3adb6575addba47d627944ebd72f7547082d static/style/blue/base.css
--- a/static/style/blue/base.css
+++ b/static/style/blue/base.css
@@ -148,7 +148,7 @@
.form-control::-moz-placeholder{color:#999}
.form-control:-ms-input-placeholder{color:#999}
.form-control::-webkit-input-placeholder{color:#999}
-.form-control,.ui-input,.ui-textarea,.ui-options,.ui-form-slider .ui-form-slider-text,.ui-select-multiple{display:block;width:100%;height:27px;padding:4px 10px;font-size:12px;line-height:1.428571429;color:#555;vertical-align:middle;background-color:#fff;border:1px solid #aaa;border-radius:3px;-webkit-box-shadow:inset 0 1px 1px rgba(0,0,0,0.075);box-shadow:inset 0 1px 1px rgba(0,0,0,0.075);-webkit-transition:border-color ease-in-out .15s, box-shadow ease-in-out .15s;transition:border-color ease-in-out .15s, box-shadow ease-in-out .15s}.form-control:focus{border-color:#66afe9;outline:0;-webkit-box-shadow:inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px rgba(102, 175, 233, 0.6);box-shadow:inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px rgba(102, 175, 233, 0.6)}
+.form-control,.ui-input,.ui-textarea,.ui-options .ui-options-input,.ui-form-slider .ui-form-slider-text,.ui-select-multiple{display:block;width:100%;height:27px;padding:4px 10px;font-size:12px;line-height:1.428571429;color:#555;vertical-align:middle;background-color:#fff;border:1px solid #aaa;border-radius:3px;-webkit-box-shadow:inset 0 1px 1px rgba(0,0,0,0.075);box-shadow:inset 0 1px 1px rgba(0,0,0,0.075);-webkit-transition:border-color ease-in-out .15s, box-shadow ease-in-out .15s;transition:border-color ease-in-out .15s, box-shadow ease-in-out .15s}.form-control:focus{border-color:#66afe9;outline:0;-webkit-box-shadow:inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px rgba(102, 175, 233, 0.6);box-shadow:inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px rgba(102, 175, 233, 0.6)}
.form-control[disabled],.form-control[readonly],fieldset[disabled] .form-control{cursor:not-allowed;background-color:#eee}
textarea.form-control{height:auto}
.form-group{margin-bottom:15px}
@@ -1434,9 +1434,9 @@
.ui-portlet-limited,.ui-portlet-narrow,.ui-portlet-narrow{max-width:900px}
.ui-popover{max-width:700px;display:none}.ui-popover .popover-close{position:absolute;right:10px;top:7px;font-size:1.2em;cursor:pointer}
.ui-popover .popover-title{padding:4px 10px}
-.ui-input,.ui-textarea,.ui-options,.ui-form-slider .ui-form-slider-text,.ui-select-multiple,.ui-textarea,.ui-options,.ui-form-slider .ui-form-slider-text,.ui-select-multiple{background:transparent}
+.ui-input,.ui-textarea,.ui-options .ui-options-input,.ui-form-slider .ui-form-slider-text,.ui-select-multiple,.ui-textarea,.ui-options .ui-options-input,.ui-form-slider .ui-form-slider-text,.ui-select-multiple{background:transparent}
.ui-textarea{height:100px !important}
-.ui-options{height:100% !important}
+.ui-options .ui-options-input{height:100% !important}
.ui-form-slider{display:inline-block;width:100%}.ui-form-slider .ui-form-slider-text{width:100px;float:left}
.ui-form-slider .ui-form-slider-element{width:calc(100% - 110px);float:left;top:8px;left:10px}
.ui-radiobutton{width:100%}.ui-radiobutton label{height:23px;line-height:1em}
@@ -1445,6 +1445,7 @@
.ui-select{position:relative}.ui-select .button{position:absolute;top:5px;right:5px}
.ui-select .select2-container{width:100%}
.ui-select select{position:relative;top:0px;height:27px;width:100%;padding-left:5px;padding-right:20px;cursor:pointer;background:transparent;-webkit-appearance:none;border:1px solid #bfbfbf;-moz-border-radius:3px;border-radius:3px}
+.ui-select-content .ui-options{float:left;padding-top:2px}
.libraryRow{background-color:#ebd9b2}
.datasetHighlighted{background-color:#f9f9f9}
.libraryItemDeleted-True{font-style:italic}
diff -r 12f6e12d91c9756154235c9e75436476a2821fe5 -r 54ed3adb6575addba47d627944ebd72f7547082d static/style/src/less/ui.less
--- a/static/style/src/less/ui.less
+++ b/static/style/src/less/ui.less
@@ -316,8 +316,10 @@
}
.ui-options {
- &:extend(.ui-input);
- height: 100% !important;
+ .ui-options-input {
+ &:extend(.ui-input);
+ height: 100% !important;
+ }
}
@@ -384,4 +386,11 @@
.ui-select-multiple {
&:extend(.ui-input);
+}
+
+.ui-select-content {
+ .ui-options {
+ float: left;
+ padding-top: 2px;
+ }
}
\ No newline at end of file
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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commit/galaxy-central: guerler: Ui: Fix slider value element
by commits-noreply＠bitbucket.org 06 Feb '15
by commits-noreply＠bitbucket.org 06 Feb '15
06 Feb '15
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/12f6e12d91c9/
Changeset: 12f6e12d91c9
User: guerler
Date: 2015-02-06 21:38:11+00:00
Summary: Ui: Fix slider value element
Affected #: 3 files
diff -r ec3778d1b8081f4790e14908a4b751d857d1789f -r 12f6e12d91c9756154235c9e75436476a2821fe5 client/galaxy/scripts/mvc/ui/ui-slider.js
--- a/client/galaxy/scripts/mvc/ui/ui-slider.js
+++ b/client/galaxy/scripts/mvc/ui/ui-slider.js
@@ -11,21 +11,21 @@
precise : false,
split : 10000
},
-
+
// initialize
initialize : function(options) {
// link this
var self = this;
-
+
// configure options
this.options = Utils.merge(options, this.optionsDefault);
-
+
// create new element
this.setElement(this._template(this.options));
-
+
// determine wether to use the slider
this.useslider = this.options.max !== null && this.options.min !== null && this.options.max > this.options.min;
-
+
// set default step size
if (this.options.step === null) {
this.options.step = 1;
@@ -33,7 +33,7 @@
this.options.step = (this.options.max - this.options.min) / this.options.split;
}
}
-
+
// create slider if min and max are defined properly
if (this.useslider) {
this.$slider = this.$el.find('#slider');
@@ -44,20 +44,20 @@
} else {
this.$el.find('.ui-form-slider-text').css('width', '100%');
}
-
+
// link text input field
this.$text = this.$el.find('#text');
-
+
// set initial value
if (this.options.value !== undefined) {
this.value(this.options.value);
}
-
+
// add text field event
- this.$text.on('input', function () {
- self.value($(this).val());
+ this.$text.on('change', function () {
+ self.value($(this).val());
});
-
+
// add text field event
var pressed = [];
this.$text.on('keyup', function(e) {
@@ -74,7 +74,7 @@
}
});
},
-
+
// value
value : function (new_val) {
if (new_val !== undefined) {
@@ -82,7 +82,7 @@
if (isNaN(new_val)) {
new_val = 0;
}
-
+
// apply limit
if (this.options.max !== null) {
new_val = Math.min(new_val, this.options.max);
@@ -90,21 +90,21 @@
if (this.options.min !== null) {
new_val = Math.max(new_val, this.options.min);
}
-
+
+ // set values
+ this.$slider && this.$slider.slider('value', new_val);
+ this.$text.val(new_val);
+
// trigger on change event
if (this.options.onchange) {
this.options.onchange(new_val);
}
-
- // set values
- this.$slider && this.$slider.slider('value', new_val);
- this.$text.val(new_val);
}
-
+
// return current value
return this.$text.val();
},
-
+
// element
_template: function(options) {
return '<div id="' + options.id + '" class="ui-form-slider">' +
diff -r ec3778d1b8081f4790e14908a4b751d857d1789f -r 12f6e12d91c9756154235c9e75436476a2821fe5 static/scripts/mvc/ui/ui-slider.js
--- a/static/scripts/mvc/ui/ui-slider.js
+++ b/static/scripts/mvc/ui/ui-slider.js
@@ -11,21 +11,21 @@
precise : false,
split : 10000
},
-
+
// initialize
initialize : function(options) {
// link this
var self = this;
-
+
// configure options
this.options = Utils.merge(options, this.optionsDefault);
-
+
// create new element
this.setElement(this._template(this.options));
-
+
// determine wether to use the slider
this.useslider = this.options.max !== null && this.options.min !== null && this.options.max > this.options.min;
-
+
// set default step size
if (this.options.step === null) {
this.options.step = 1;
@@ -33,7 +33,7 @@
this.options.step = (this.options.max - this.options.min) / this.options.split;
}
}
-
+
// create slider if min and max are defined properly
if (this.useslider) {
this.$slider = this.$el.find('#slider');
@@ -44,20 +44,20 @@
} else {
this.$el.find('.ui-form-slider-text').css('width', '100%');
}
-
+
// link text input field
this.$text = this.$el.find('#text');
-
+
// set initial value
if (this.options.value !== undefined) {
this.value(this.options.value);
}
-
+
// add text field event
- this.$text.on('input', function () {
- self.value($(this).val());
+ this.$text.on('change', function () {
+ self.value($(this).val());
});
-
+
// add text field event
var pressed = [];
this.$text.on('keyup', function(e) {
@@ -74,7 +74,7 @@
}
});
},
-
+
// value
value : function (new_val) {
if (new_val !== undefined) {
@@ -82,7 +82,7 @@
if (isNaN(new_val)) {
new_val = 0;
}
-
+
// apply limit
if (this.options.max !== null) {
new_val = Math.min(new_val, this.options.max);
@@ -90,21 +90,21 @@
if (this.options.min !== null) {
new_val = Math.max(new_val, this.options.min);
}
-
+
+ // set values
+ this.$slider && this.$slider.slider('value', new_val);
+ this.$text.val(new_val);
+
// trigger on change event
if (this.options.onchange) {
this.options.onchange(new_val);
}
-
- // set values
- this.$slider && this.$slider.slider('value', new_val);
- this.$text.val(new_val);
}
-
+
// return current value
return this.$text.val();
},
-
+
// element
_template: function(options) {
return '<div id="' + options.id + '" class="ui-form-slider">' +
diff -r ec3778d1b8081f4790e14908a4b751d857d1789f -r 12f6e12d91c9756154235c9e75436476a2821fe5 static/scripts/packed/mvc/ui/ui-slider.js
--- a/static/scripts/packed/mvc/ui/ui-slider.js
+++ b/static/scripts/packed/mvc/ui/ui-slider.js
@@ -1,1 +1,1 @@
-define(["utils/utils"],function(a){var b=Backbone.View.extend({optionsDefault:{min:null,max:null,step:null,precise:false,split:10000},initialize:function(d){var c=this;this.options=a.merge(d,this.optionsDefault);this.setElement(this._template(this.options));this.useslider=this.options.max!==null&&this.options.min!==null&&this.options.max>this.options.min;if(this.options.step===null){this.options.step=1;if(this.options.precise&&this.useslider){this.options.step=(this.options.max-this.options.min)/this.options.split}}if(this.useslider){this.$slider=this.$el.find("#slider");this.$slider.slider(this.options);this.$slider.on("slide",function(f,g){c.value(g.value)})}else{this.$el.find(".ui-form-slider-text").css("width","100%")}this.$text=this.$el.find("#text");if(this.options.value!==undefined){this.value(this.options.value)}this.$text.on("input",function(){c.value($(this).val())});var e=[];this.$text.on("keyup",function(f){e[f.which]=false});this.$text.on("keydown",function(g){var f=g.which;e[f]=true;if(!(f==8||f==9||f==13||f==37||f==39||(f>=48&&f<=57)||(f==190&&$(this).val().indexOf(".")==-1&&c.options.precise)||(f==189&&$(this).val().indexOf("-")==-1)||e[91]||e[17])){event.preventDefault()}})},value:function(c){if(c!==undefined){if(isNaN(c)){c=0}if(this.options.max!==null){c=Math.min(c,this.options.max)}if(this.options.min!==null){c=Math.max(c,this.options.min)}if(this.options.onchange){this.options.onchange(c)}this.$slider&&this.$slider.slider("value",c);this.$text.val(c)}return this.$text.val()},_template:function(c){return'<div id="'+c.id+'" class="ui-form-slider"><input id="text" type="text" class="ui-form-slider-text"/><div id="slider" class="ui-form-slider-element"/></div>'}});return{View:b}});
\ No newline at end of file
+define(["utils/utils"],function(a){var b=Backbone.View.extend({optionsDefault:{min:null,max:null,step:null,precise:false,split:10000},initialize:function(d){var c=this;this.options=a.merge(d,this.optionsDefault);this.setElement(this._template(this.options));this.useslider=this.options.max!==null&&this.options.min!==null&&this.options.max>this.options.min;if(this.options.step===null){this.options.step=1;if(this.options.precise&&this.useslider){this.options.step=(this.options.max-this.options.min)/this.options.split}}if(this.useslider){this.$slider=this.$el.find("#slider");this.$slider.slider(this.options);this.$slider.on("slide",function(f,g){c.value(g.value)})}else{this.$el.find(".ui-form-slider-text").css("width","100%")}this.$text=this.$el.find("#text");if(this.options.value!==undefined){this.value(this.options.value)}this.$text.on("change",function(){c.value($(this).val())});var e=[];this.$text.on("keyup",function(f){e[f.which]=false});this.$text.on("keydown",function(g){var f=g.which;e[f]=true;if(!(f==8||f==9||f==13||f==37||f==39||(f>=48&&f<=57)||(f==190&&$(this).val().indexOf(".")==-1&&c.options.precise)||(f==189&&$(this).val().indexOf("-")==-1)||e[91]||e[17])){event.preventDefault()}})},value:function(c){if(c!==undefined){if(isNaN(c)){c=0}if(this.options.max!==null){c=Math.min(c,this.options.max)}if(this.options.min!==null){c=Math.max(c,this.options.min)}this.$slider&&this.$slider.slider("value",c);this.$text.val(c);if(this.options.onchange){this.options.onchange(c)}}return this.$text.val()},_template:function(c){return'<div id="'+c.id+'" class="ui-form-slider"><input id="text" type="text" class="ui-form-slider-text"/><div id="slider" class="ui-form-slider-element"/></div>'}});return{View:b}});
\ No newline at end of file
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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commit/galaxy-central: carlfeberhard: Fix to 8c71422: add the file
by commits-noreply＠bitbucket.org 06 Feb '15
by commits-noreply＠bitbucket.org 06 Feb '15
06 Feb '15
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/ec3778d1b808/
Changeset: ec3778d1b808
User: carlfeberhard
Date: 2015-02-06 18:56:31+00:00
Summary: Fix to 8c71422: add the file
Affected #: 1 file
diff -r 8c71422bdfb151f8551a67e2d2c740b7c0da3f15 -r ec3778d1b8081f4790e14908a4b751d857d1789f lib/galaxy/managers/configuration.py
--- /dev/null
+++ b/lib/galaxy/managers/configuration.py
@@ -0,0 +1,82 @@
+"""
+Serializers for Galaxy config file data: ConfigSerializer for all users
+and a more expanded set of data for admin in AdminConfigSerializer.
+
+Used by both the API and bootstrapped data.
+"""
+#TODO: this is a bit of an odd duck. It uses the serializer structure from managers
+# but doesn't have a model like them. It might be better in config.py or a
+# totally new area, but I'm leaving it in managers for now for class consistency.
+
+from galaxy.managers import base
+
+import logging
+log = logging.getLogger( __name__ )
+
+
+class ConfigSerializer( base.ModelSerializer ):
+
+ def __init__( self, app ):
+ super( ConfigSerializer, self ).__init__( app )
+
+ self.default_view = 'all'
+ self.add_view( 'all', self.serializers.keys() )
+
+ def default_serializer( self, trans, config, key ):
+ return config.get( key, None )
+
+ def _defaults_to( self, default ):
+ return lambda t, i, k: i.get( k, default )
+
+ def add_serializers( self ):
+ self.serializers = {
+ #TODO: this is available from user data, remove
+ 'is_admin_user' : lambda *a: False,
+
+ 'brand' : lambda t, i, k: i.get( k, "" ),
+ #TODO: this doesn't seem right
+ 'logo_url' : lambda t, i, k: web.url_for( i.get( k, '/') ),
+ 'terms_url' : lambda t, i, k: i.get( k, "" ),
+
+ #TODO: don't hardcode here - hardcode defaults once in config.py
+ 'wiki_url' : self._defaults_to( "http://galaxyproject.org/" ),
+ 'search_url' : self._defaults_to( "http://galaxyproject.org/search/usegalaxy/" ),
+ 'mailing_lists' : self._defaults_to( "http://wiki.galaxyproject.org/MailingLists" ),
+ 'screencasts_url' : self._defaults_to( "http://vimeo.com/galaxyproject" ),
+ 'citation_url' : self._defaults_to( "http://wiki.galaxyproject.org/CitingGalaxy" ),
+ 'support_url' : self._defaults_to( "http://wiki.galaxyproject.org/Support" ),
+ 'lims_doc_url' : self._defaults_to( "http://main.g2.bx.psu.edu/u/rkchak/p/sts" ),
+ 'biostar_url' : lambda t, i, k: i.biostar_url,
+ 'biostar_url_redirect' : lambda *a: web.url_for( controller='biostar', action='biostar_redirect',
+ qualified=True ),
+
+ 'allow_user_creation' : lambda t, i, k: i.allow_user_creation,
+ 'use_remote_user' : lambda t, i, k: i.use_remote_user,
+ 'remote_user_logout_href' : lambda t, i, k: i.remote_user_logout_href,
+ 'enable_cloud_launch' : self._defaults_to( False ),
+ 'datatypes_disable_auto' : self._defaults_to( False ),
+ 'allow_user_dataset_purge' : self._defaults_to( False ),
+ 'enable_unique_workflow_defaults' : self._defaults_to( False ),
+
+ 'nginx_upload_path' : self._defaults_to( web.url_for( controller='api', action='tools' ) ),
+ 'ftp_upload_dir' : self._defaults_to( None ),
+ 'ftp_upload_site' : self._defaults_to( None ),
+ }
+
+
+class AdminConfigSerializer( ConfigSerializer ):
+ """Config attributes viewable by admin users"""
+
+ def add_serializers( self ):
+ super( AdminConfigSerializer, self ).add_serializers()
+
+ self.serializers.update({
+ #TODO: this is available from user data, remove
+ 'is_admin_user' : lambda *a: True,
+
+ 'library_import_dir' : self._defaults_to( None ),
+ 'user_library_import_dir' : self._defaults_to( None ),
+ 'allow_library_path_paste' : self._defaults_to( None ),
+ 'allow_user_creation' : self._defaults_to( False ),
+ 'allow_user_deletion' : self._defaults_to( False ),
+ })
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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commit/galaxy-central: carlfeberhard: API, configuration: expand exposed settings to include those needed by the masthead in galaxy.masthead.mako, add serializers for config
by commits-noreply＠bitbucket.org 06 Feb '15
by commits-noreply＠bitbucket.org 06 Feb '15
06 Feb '15
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/8c71422bdfb1/
Changeset: 8c71422bdfb1
User: carlfeberhard
Date: 2015-02-06 18:38:53+00:00
Summary: API, configuration: expand exposed settings to include those needed by the masthead in galaxy.masthead.mako, add serializers for config
Affected #: 2 files
diff -r 03c7a893d7dd3822939a20e26b7fbb496feab492 -r 8c71422bdfb151f8551a67e2d2c740b7c0da3f15 lib/galaxy/webapps/galaxy/api/configuration.py
--- a/lib/galaxy/webapps/galaxy/api/configuration.py
+++ b/lib/galaxy/webapps/galaxy/api/configuration.py
@@ -3,36 +3,23 @@
and configuration settings.
"""
-from galaxy.web import _future_expose_api as expose_api
+from galaxy.web import _future_expose_api_anonymous as expose_api_anonymous
from galaxy.web.base.controller import BaseAPIController
+from galaxy.managers import base
+
import logging
log = logging.getLogger( __name__ )
class ConfigurationController( BaseAPIController ):
- # config attributes viewable by non-admin users
- EXPOSED_USER_OPTIONS = [
- 'enable_unique_workflow_defaults',
- 'ftp_upload_site',
- 'ftp_upload_dir',
- 'wiki_url',
- 'support_url',
- 'logo_url',
- 'terms_url',
- 'allow_user_dataset_purge',
- 'use_remote_user'
- ]
- # config attributes viewable by admin users
- EXPOSED_ADMIN_OPTIONS = [
- 'library_import_dir',
- 'user_library_import_dir',
- 'allow_library_path_paste',
- 'allow_user_creation',
- 'allow_user_deletion',
- ]
- @expose_api
+ def __init__( self, app ):
+ super( ConfigurationController, self ).__init__( app )
+ self.config_serializer = ConfigSerializer( app )
+ self.admin_config_serializer = AdminConfigSerializer( app )
+
+ @expose_api_anonymous
def index( self, trans, **kwd ):
"""
GET /api/configuration
@@ -40,11 +27,85 @@
Note: a more complete list is returned if the user is an admin.
"""
- return self.get_config_dict( trans.app.config, is_admin=trans.user_is_admin() )
+ is_admin = self.user_manager.is_admin( trans, trans.user )
+ serialization_params = self._parse_serialization_params( kwd, 'all' )
+ return self.get_config_dict( trans, is_admin, **serialization_params )
- def get_config_dict( self, config, is_admin=False ):
- options = self.EXPOSED_USER_OPTIONS
- if is_admin:
- options.extend( self.EXPOSED_ADMIN_OPTIONS )
- config_dict = dict( [ ( key, getattr( config, key, None ) ) for key in options ] )
- return config_dict
+ def get_config_dict( self, trans, return_admin=False, **kwargs ):
+ serializer = self.config_serializer
+ if return_admin:
+ #TODO: this should probably just be under a different route: 'admin/configuration'
+ serializer = self.admin_config_serializer
+
+ if 'default_view' not in kwargs:
+ kwargs[ 'default_view' ] = serializer.default_view
+ serialized = serializer.serialize_to_view( trans, self.app.config, **kwargs )
+ return serialized
+
+
+class ConfigSerializer( base.ModelSerializer ):
+
+ def __init__( self, app ):
+ super( ConfigSerializer, self ).__init__( app )
+
+ self.default_view = 'all'
+ self.add_view( 'all', self.serializers.keys() )
+
+ def default_serializer( self, trans, config, key ):
+ return config.get( key, None )
+
+ def _defaults_to( self, default ):
+ return lambda t, i, k: i.get( k, default )
+
+ def add_serializers( self ):
+ self.serializers = {
+ #TODO: this is available from user data, remove
+ 'is_admin_user' : lambda *a: False,
+
+ 'brand' : lambda t, i, k: i.get( k, "" ),
+ #TODO: this doesn't seem right
+ 'logo_url' : lambda t, i, k: self.url_for( i.get( k, '/') ),
+ 'terms_url' : lambda t, i, k: i.get( k, "" ),
+
+ #TODO: don't hardcode here - hardcode defaults once in config.py
+ 'wiki_url' : self._defaults_to( "http://galaxyproject.org/" ),
+ 'search_url' : self._defaults_to( "http://galaxyproject.org/search/usegalaxy/" ),
+ 'mailing_lists' : self._defaults_to( "http://wiki.galaxyproject.org/MailingLists" ),
+ 'screencasts_url' : self._defaults_to( "http://vimeo.com/galaxyproject" ),
+ 'citation_url' : self._defaults_to( "http://wiki.galaxyproject.org/CitingGalaxy" ),
+ 'support_url' : self._defaults_to( "http://wiki.galaxyproject.org/Support" ),
+ 'lims_doc_url' : self._defaults_to( "http://main.g2.bx.psu.edu/u/rkchak/p/sts" ),
+ 'biostar_url' : lambda t, i, k: i.biostar_url,
+ 'biostar_url_redirect' : lambda *a: self.url_for( controller='biostar', action='biostar_redirect',
+ qualified=True ),
+
+ 'allow_user_creation' : lambda t, i, k: i.allow_user_creation,
+ 'use_remote_user' : lambda t, i, k: i.use_remote_user,
+ 'remote_user_logout_href' : lambda t, i, k: i.remote_user_logout_href,
+ 'enable_cloud_launch' : self._defaults_to( False ),
+ 'datatypes_disable_auto' : self._defaults_to( False ),
+ 'allow_user_dataset_purge' : self._defaults_to( False ),
+ 'enable_unique_workflow_defaults' : self._defaults_to( False ),
+
+ 'nginx_upload_path' : self._defaults_to( self.url_for( controller='api', action='tools' ) ),
+ 'ftp_upload_dir' : self._defaults_to( None ),
+ 'ftp_upload_site' : self._defaults_to( None ),
+ }
+
+
+class AdminConfigSerializer( ConfigSerializer ):
+ # config attributes viewable by admin users
+
+ def add_serializers( self ):
+ super( AdminConfigSerializer, self ).add_serializers()
+
+ self.serializers.update({
+ #TODO: this is available from user data, remove
+ 'is_admin_user' : lambda *a: True,
+
+ 'library_import_dir' : self._defaults_to( None ),
+ 'user_library_import_dir' : self._defaults_to( None ),
+ 'allow_library_path_paste' : self._defaults_to( None ),
+ 'allow_user_creation' : self._defaults_to( False ),
+ 'allow_user_deletion' : self._defaults_to( False ),
+ })
diff -r 03c7a893d7dd3822939a20e26b7fbb496feab492 -r 8c71422bdfb151f8551a67e2d2c740b7c0da3f15 templates/galaxy_client_app.mako
--- a/templates/galaxy_client_app.mako
+++ b/templates/galaxy_client_app.mako
@@ -49,12 +49,11 @@
<%
config_dict = {}
try:
- if 'configuration' in trans.webapp.api_controllers:
- config_dict = ( trans.webapp.api_controllers[ 'configuration' ]
- .get_config_dict( trans.app.config, trans.user_is_admin() ) )
+ controller = trans.webapp.api_controllers.get( 'configuration', None )
+ if controller:
+ config_dict = controller.get_config_dict( trans, trans.user_is_admin() )
except Exception, exc:
pass
-
return config_dict
%></%def>
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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commit/galaxy-central: dan: Fix for SelectToolParameters that utilize dynamic options and that make use of __trans__ failing at get_legal_values().
by commits-noreply＠bitbucket.org 06 Feb '15
by commits-noreply＠bitbucket.org 06 Feb '15
06 Feb '15
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/03c7a893d7dd/
Changeset: 03c7a893d7dd
User: dan
Date: 2015-02-06 16:56:54+00:00
Summary: Fix for SelectToolParameters that utilize dynamic options and that make use of __trans__ failing at get_legal_values().
Affected #: 1 file
diff -r c494ee616c1aafa755e4d80b893697623e4431bb -r 03c7a893d7dd3822939a20e26b7fbb496feab492 lib/galaxy/tools/parameters/basic.py
--- a/lib/galaxy/tools/parameters/basic.py
+++ b/lib/galaxy/tools/parameters/basic.py
@@ -782,13 +782,17 @@
self.legal_values.add( value )
self.is_dynamic = ( ( self.dynamic_options is not None ) or ( self.options is not None ) )
+ def _get_dynamic_options_call_other_values( self, trans, other_values ):
+ call_other_values = { "__trans__": trans }
+ if other_values:
+ call_other_values.update( other_values.dict )
+ return call_other_values
+
def get_options( self, trans, other_values ):
if self.options:
return self.options.get_options( trans, other_values )
elif self.dynamic_options:
- call_other_values = {"__trans__": trans}
- if other_values:
- call_other_values.update( other_values.dict )
+ call_other_values = self._get_dynamic_options_call_other_values( trans, other_values )
try:
return eval( self.dynamic_options, self.tool.code_namespace, call_other_values )
except Exception:
@@ -805,8 +809,10 @@
return map( _get_UnvalidatedValue_value, set( v for _, v, _ in self.options.get_options( trans, other_values ) ) )
elif self.dynamic_options:
try:
- return set( v for _, v, _ in eval( self.dynamic_options, self.tool.code_namespace, other_values ) )
- except Exception:
+ call_other_values = self._get_dynamic_options_call_other_values( trans, other_values )
+ return set( v for _, v, _ in eval( self.dynamic_options, self.tool.code_namespace, call_other_values ) )
+ except Exception, e:
+ log.debug( 'Determining legal values failed for "%s": %s', self.name, e )
return set()
else:
return self.legal_values
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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commit/galaxy-central: dannon: Relocate uwsgi test to the beginning of config, since this might affect other config options down the road.
by commits-noreply＠bitbucket.org 06 Feb '15
by commits-noreply＠bitbucket.org 06 Feb '15
06 Feb '15
1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/c494ee616c1a/
Changeset: c494ee616c1a
User: dannon
Date: 2015-02-06 16:40:47+00:00
Summary: Relocate uwsgi test to the beginning of config, since this might affect other config options down the road.
Affected #: 1 file
diff -r 015395841d805061261913e92d408121766e470b -r c494ee616c1aafa755e4d80b893697623e4431bb lib/galaxy/config.py
--- a/lib/galaxy/config.py
+++ b/lib/galaxy/config.py
@@ -50,6 +50,19 @@
os.umask( self.umask ) # can't get w/o set, so set it back
self.gid = os.getgid() # if running under newgrp(1) we'll need to fix the group of data created on the cluster
+ # TEST FOR UWSGI
+ self.is_uwsgi = False
+ try:
+ # The uwsgi module is automatically injected by the parent uwsgi
+ # process and only exists that way. If anything works, this is a
+ # uwsgi-managed process.
+ import uwsgi
+ if uwsgi.numproc:
+ self.is_uwsgi = True
+ except ImportError:
+ # This is not a uwsgi process, or something went horribly wrong.
+ pass
+
# Database related configuration
self.database = resolve_path( kwargs.get( "database_file", "database/universe.sqlite" ), self.root )
self.database_connection = kwargs.get( "database_connection", False )
@@ -428,18 +441,6 @@
self.citation_cache_type = kwargs.get( "citation_cache_type", "file" )
self.citation_cache_data_dir = self.resolve_path( kwargs.get( "citation_cache_data_dir", "database/citations/data" ) )
self.citation_cache_lock_dir = self.resolve_path( kwargs.get( "citation_cache_lock_dir", "database/citations/locks" ) )
- # TEST FOR UWSGI
- self.is_uwsgi = False
- try:
- # The uwsgi module is automatically injected by the parent uwsgi
- # process and only exists that way. If anything works, this is a
- # uwsgi-managed process.
- import uwsgi
- if uwsgi.numproc:
- self.is_uwsgi = True
- except ImportError:
- # This is not a uwsgi process, or something went horribly wrong.
- pass
@property
def sentry_dsn_public( self ):
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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2 new commits in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/7bb00c5c04c9/
Changeset: 7bb00c5c04c9
User: dannon
Date: 2015-02-06 16:33:33+00:00
Summary: Adjust generated queue names to match with new postfork manipulation of config.server_name
Affected #: 1 file
diff -r 3afdce4f6a74f88aa36ed7d9c4f4180906c88f77 -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 lib/galaxy/queues.py
--- a/lib/galaxy/queues.py
+++ b/lib/galaxy/queues.py
@@ -30,9 +30,8 @@
possible_uwsgi_queues = []
if config.is_uwsgi:
import uwsgi
- possible_uwsgi_queues = [Queue("control.%s.%s" % (config.server_name, wkr['id']), galaxy_exchange, routing_key='control') for wkr in uwsgi.workers()]
- return possible_uwsgi_queues + [Queue('c ntrol.%s' % q, galaxy_exchange, routing_key='control') for
- q in config.server_names]
+ possible_uwsgi_queues = [Queue("control.%s.%s" % (config.server_name.split('.')[0], wkr['id']), galaxy_exchange, routing_key='control') for wkr in uwsgi.workers()]
+ return possible_uwsgi_queues + [Queue('control.%s' % q, galaxy_exchange, routing_key='control') for q in config.server_names]
def control_queue_from_config(config):
@@ -40,10 +39,4 @@
Returns a Queue instance with the correct name and routing key for this
galaxy process's config
"""
- if config.is_uwsgi:
- import uwsgi
- return Queue("control.%s.%s" % (config.server_name, uwsgi.worker_id()), galaxy_exchange,
- routing_key='control')
- else:
- return Queue("control.%s" % config.server_name, galaxy_exchange,
- routing_key='control')
+ return Queue("control.%s" % config.server_name, galaxy_exchange, routing_key='control')
https://bitbucket.org/galaxy/galaxy-central/commits/015395841d80/
Changeset: 015395841d80
User: dannon
Date: 2015-02-06 16:33:45+00:00
Summary: Merge.
Affected #: 27 files
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b client/galaxy/scripts/mvc/tools/tools-form-base.js
--- a/client/galaxy/scripts/mvc/tools/tools-form-base.js
+++ b/client/galaxy/scripts/mvc/tools/tools-form-base.js
@@ -306,7 +306,7 @@
});
// append message
- this.portlet.append(this.message.$el, true);
+ this.portlet.append(this.message.$el.addClass('ui-margin-top'));
// append tool section
this.portlet.append(this.section.$el);
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b client/galaxy/scripts/mvc/tools/tools-repeat.js
--- a/client/galaxy/scripts/mvc/tools/tools-repeat.js
+++ b/client/galaxy/scripts/mvc/tools/tools-repeat.js
@@ -44,7 +44,7 @@
this.$el.append(this.table.$el);
// add button
- this.$el.append(Utils.wrap(this.button_new.$el));
+ this.$el.append($('<div/>').append(this.button_new.$el));
// clear list
this.list = {};
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b client/galaxy/scripts/mvc/tools/tools-section.js
--- a/client/galaxy/scripts/mvc/tools/tools-section.js
+++ b/client/galaxy/scripts/mvc/tools/tools-section.js
@@ -139,7 +139,7 @@
});
// displays as grouped subsection
- sub_section.$el.addClass('ui-table-form-section');
+ sub_section.$el.addClass('ui-table-section');
// create table row
this.table.add(sub_section.$el);
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b client/galaxy/scripts/mvc/tools/tools-select-content.js
--- a/client/galaxy/scripts/mvc/tools/tools-select-content.js
+++ b/client/galaxy/scripts/mvc/tools/tools-select-content.js
@@ -110,7 +110,7 @@
// add elements to dom
if (_.size(this.list) > 1) {
- this.$el.append(Utils.wrap(this.button_type.$el));
+ this.$el.append(this.button_type.$el.addClass('ui-margin-bottom'));
}
for (var i in this.list) {
this.$el.append(this.list[i].field.$el);
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b client/galaxy/scripts/mvc/ui/ui-portlet.js
--- a/client/galaxy/scripts/mvc/ui/ui-portlet.js
+++ b/client/galaxy/scripts/mvc/ui/ui-portlet.js
@@ -84,12 +84,8 @@
},
// append
- append: function($el, unwrapped) {
- if (unwrapped) {
- this.$content.append($el);
- } else {
- this.$content.append(Utils.wrap($el));
- }
+ append: function($el) {
+ this.$content.append($el);
},
// content
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b client/galaxy/scripts/utils/utils.js
--- a/client/galaxy/scripts/utils/utils.js
+++ b/client/galaxy/scripts/utils/utils.js
@@ -219,16 +219,6 @@
};
/**
- * Wrap an dom element into a paragraph
- * @param{Element} $el - DOM element to be wrapped
- */
-function wrap($el) {
- var wrapper = $('<p></p>');
- wrapper.append($el);
- return wrapper;
-};
-
-/**
* Create a time stamp
*/
function time() {
@@ -256,7 +246,6 @@
bytesToString: bytesToString,
uuid: uuid,
time: time,
- wrap: wrap,
request: request,
sanitize: sanitize,
textify: textify,
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b config/plugins/visualizations/charts/static/app.css
--- a/config/plugins/visualizations/charts/static/app.css
+++ b/config/plugins/visualizations/charts/static/app.css
@@ -58,7 +58,7 @@
.charts-viewport .info {
position: absolute;
- margin: 10px 20px 50px 10px;
+ margin: 20px 20px 50px 10px;
}
.charts-viewport .text {
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b config/plugins/visualizations/charts/static/build-app.js
--- a/config/plugins/visualizations/charts/static/build-app.js
+++ b/config/plugins/visualizations/charts/static/build-app.js
@@ -3,4 +3,4 @@
// (c) 2009-2014 Jeremy Ashkenas, DocumentCloud and Investigative Reporters & Editors
// Underscore may be freely distributed under the MIT license.
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u=Backbone.View.extend({optionsDefault:{url:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options))},_template:function(e){return'<img class="ui-image '+e.cls+'" src="'+e.url+'"/>'}}),a=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options))},title:function(e){this.$el.html(e)},_template:function(e){return'<label class="ui-label '+e.cls+'">'+e.title+"</label>"},value:function(){return options.title}}),f=Backbone.View.extend({optionsDefault:{floating:"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){return'<div><span class="fa '+e.icon+'" class="ui-icon"/> '+e.title+"</div>"}}),l=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button btn btn-default",icon:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",function(){$(".tooltip").hide(),t.onclick&&t.onclick()}),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){var t='<button id="'+e.id+'" type="submit" style="float: '+e.floating+';" type="button" class="'+e.cls+'">';return e.icon&&(t+='<i class="icon fa '+e.icon+'"></i> '),t+=e.title+"</button>",t}}),c=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button-icon",icon:"",tooltip:"",onclick:null},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.$button=this.$el.find(".button");var n=this;$(this.el).on("click",function(){$(".tooltip").hide(),t.onclick&&!n.disabled&&t.onclick()}),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},disable:function(){this.$button.addClass("disabled"),this.disabled=!0},enable:function(){this.$button.removeClass("disabled"),this.disabled=!1},setIcon:function(e){this.$("i").removeClass(this.options.icon).addClass(e),this.options.icon=e},_template:function(e){var t="";e.title&&(t="width: auto;");var n='<div id="'+e.id+'" style="float: '+e.floating+"; "+t+'" class="'+e.cls+'">';return e.title?n+='<div class="button"><i class="icon fa '+e.icon+'"/> '+'<span class="title">'+e.title+"</span>"+"</div>":n+='<i class="icon fa '+e.icon+'"/>',n+="</div>",n}}),h=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",t.onclick)},_template:function(e){return'<div><a href="javascript:void(0)" class="ui-anchor '+e.cls+'">'+e.title+"</a></div>"}}),p=Backbone.View.extend({optionsDefault:{message:null,status:"info",persistent:!1},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement("<div></div>"),this.options.message&&this.update(this.options)},update:function(t){this.options=e.merge(t,this.optionsDefault);if(t.message!=""){this.$el.html(this._template(this.options)),this.$el.find(".alert").append(t.message),this.$el.fadeIn(),this.timeout&&window.clearTimeout(this.timeout);if(!t.persistent){var n=this;this.timeout=window.setTimeout(function(){n.$el.is(":visible")?n.$el.fadeOut():n.$el.hide()},3e3)}}else this.$el.fadeOut()},_template:function(e){return'<div class="ui-message alert alert-'+e.status+'"/>'}}),d=Backbone.View.extend({optionsDefault:{onclick:null,searchword:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options));var n=this;this.options.onclick&&this.$el.on("submit",function(e){var t=n.$el.find("#search");n.options.onclick(t.val())})},_template:function(e){return'<div class="ui-search"><form onsubmit="return false;"><input id="search" class="form-control input-sm" type="text" name="search" placeholder="Search..." value="'+e.searchword+'">'+'<button type="submit" class="btn search-btn">'+'<i class="fa fa-search"></i>'+"</button>"+"</form>"+"</div>"}}),v=Backbone.View.extend({optionsDefault:{type:"text",placeholder:"",disabled:!1,visible:!0,cls:"",area:!1},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.options.value!==undefined&&this.value(this.options.value),this.options.disabled&&this.$el.prop("disabled",!0),this.options.visible||this.$el.hide();var n=this;this.$el.on("input",function(){n.options.onchange&&n.options.onchange(n.$el.val())})},value:function(e){return e!==undefined&&this.$el.val(e),this.$el.val()},_template:function(e){return e.area?'<textarea id="'+e.id+'" class="ui-textarea '+e.cls+'"></textarea>':'<input id="'+e.id+'" type="'+e.type+'" value="'+e.value+'" placeholder="'+e.placeholder+'" class="ui-input '+e.cls+'">'}}),m=Backbone.View.extend({initialize:function(e){this.options=e,this.setElement(this._template(this.options)),this.options.value!==undefined&&this.value(this.options.value)},value:function(e){return e!==undefined&&this.$("hidden").val(e),this.$("hidden").val()},_template:function(e){var t='<div id="'+e.id+'" >';return e.info&&(t+="<label>"+e.info+"</label>"),t+='<hidden value="'+e.value+'"/>'+"</div>",t}}),g=Backbone.View.extend({optionsDefault:{class_add:"fa fa-square-o",class_remove:"fa fa-check-square-o",class_partial:"fa fa-minus-square-o",value:!1},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement($("<div/>")),this.value(Boolean(this.options.value));var n=this;this.$el.on("click",function(){n.value(!n.current)})},value:function(e){return e!==undefined&&(this.current=e,e?this.$el.removeClass().addClass("ui-checkbutton").addClass(this.options.class_remove):this.$el.removeClass().addClass("ui-checkbutton").addClass(this.options.class_add),this.options.onchange&&this.options.onchange(e)),this.current}});return{Anchor:h,Button:l,ButtonIcon:c,ButtonMenu:s,Icon:f,Image:u,Input:v,Label:a,Message:p,Modal:o,RadioButton:r.RadioButton,Checkbox:r.Checkbox,Radio:r.Radio,CheckButton:g,Searchbox:d,Select:t,Hidden:m,Slider:n,Drilldown:i}}),define("plugin/library/jobs",["utils/utils"],function(e){return Backbone.Model.extend({initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e,t,n,r,i){var s=this;e.state("wait","Requesting job results...");var o=e.get("dataset_id_job");o!=""?s._wait(e,r,i):s._submit(e,t,n,r,i)},cleanup:function(t){var n=this,r=t.get("dataset_id_job");r!=""&&(e.request({type:"PUT",url:config.root+"api/histories/none/contents/"+r,data:{deleted:!0},success:function(){n._refreshHdas()}}),t.set("dataset_id_job",""))},_submit:function(t,n,r,i,s){var o=this,u=t.id,a=t.get("type"),f=t.definition;data={tool_id:"charts",inputs:{input:{id:t.get("dataset_id"),src:"hda"},module:f.execute,columns:r,settings:n}},t.state("wait","Sending job request..."),e.request({type:"POST",url:config.root+"api/tools",data:data,success:function(e){if(!e.outputs||e.outputs.length==0)t.state("failed","Job submission failed. No response."),s&&s();else{o._refreshHdas();var n=e.outputs[0];t.state("wait","Your job has been queued. You may close the browser window. The job will run in the background."),t.set("dataset_id_job",n.id),o.app.storage.save(),o._wait(t,i,s)}},error:function(e){var n="";e&&e.message&&e.message.data&&e.message.data.input&&(n=e.message.data.input+"."),t.state("failed","This visualization requires the 'charts' tool. Please make sure it is installed. "+n),s&&s()}})},_wait:function(t,n,r){var i=this;e.request({type:"GET",url:config.root+"api/datasets/"+t.get("dataset_id_job"),data:{},success:function(e){var s=!1;switch(e.state){case"ok":t.state("wait","Job completed successfully..."),n&&n(e),s=!0;break;case"error":t.state("failed","Job has failed. Please check the history for details."),r&&r(e),s=!0;break;case"running":t.state("wait","Your job is running. You may close the browser window. The job will continue in the background.")}s||setTimeout(function(){i._wait(t,n,r)},i.app.config.get("query_timeout"))}})},_refreshHdas:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.refreshContents()}})}),define("plugin/library/datasets",["utils/utils"],function(e){return Backbone.Collection.extend({list:{},cache:{},initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e){e.groups?this._get_blocks(e):this._get_dataset(e.id,e.success,e.error)},_get_blocks:function(e){function c(i){l._get(i,function(){var s=!1;for(var o in e.groups){destination_group=e.groups[o],source_group=i.groups[o],destination_group.values||(destination_group.values=[]),destination_group.values=destination_group.values.concat(source_group.values);if(source_group.values.length==0){s=!0;break}}if(++f<u&&!s){n&&n(parseInt(f/u*100));var l=i.start+r;i=$.extend(!0,a,{start:l}),c(i)}else t()})}var t=e.success,n=e.progress,r=this.app.config.get("query_limit"),i=e.start||0,s=i+e.query_limit||i+this.app.config.get("query_limit"),o=Math.abs(s-i);if(o<=0){console.debug("FAILED - Datasets::request() - Invalid query range.");return}var u=Math.ceil(o/r)||1,a=$.extend(!0,{},e),f=0,l=this,h=$.extend(!0,a,{start:i});this._get_dataset(e.id,function(){c(h)})},_get_dataset:function(t,n,r){var i=this.list[t];if(i){n(i);return}var s=this;e.request({type:"GET",url:config.root+"api/datasets/"+t,success:function(e){switch(e.state){case"error":r&&r(e);break;default:s.list[t]=e,n(e)}}})},_block_id:function(e,t){return e.id+"_"+e.start+"_"+e.start+this.app.config.get("query_limit")+"_"+t},_get:function(e,t){e.start=e.start||0;var n=[],r={},i=0;for(var s in e.groups){var o=e.groups[s];for(var u in o.columns){var a=o.columns[u].index,f=this._block_id(e,a);if(this.cache[f]||a==="auto"||a==="zero")continue;!r[a]&&a!==undefined&&(r[a]=i,n.push(a),i++)}}if(n.length==0){this._fill_from_cache(e),t(e);return}var l={dataset_id:e.id,start:e.start,columns:n},c=this;this._fetch(l,function(r){for(var i in r){var s=n[i],o=c._block_id(e,s);c.cache[o]=r[i]}c._fill_from_cache(e),t(e)})},_fill_from_cache:function(e){var t=e.start;console.debug("Datasets::_fill_from_cache() - Filling request from cache at "+t+".");var n=0;for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s],u=this._block_id(e,o.index),a=this.cache[u];a&&(n=Math.max(n,a.length))}}n==0&&console.debug("Datasets::_fill_from_cache() - Reached data range limit.");for(var r in e.groups){var i=e.groups[r];i.values=[];for(var f=0;f<n;f++)i.values[f]={x:parseInt(f)+t}}for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s];switch(o.index){case"auto":for(var f=0;f<n;f++){var l=i.values[f];l[s]=parseInt(f)+t}break;case"zero":for(var f=0;f<n;f++){var l=i.values[f];l[s]=0}break;default:var u=this._block_id(e,o.index),a=this.cache[u];for(var f=0;f<n;f++){var l=i.values[f],c=a[f];isNaN(c)&&!o.is_label&&(c=0),l[s]=c}}}}},_fetch:function(t,n){var r=t.start?t.start:0,i=this.app.config.get("query_limit"),s=0;t.columns&&(s=t.columns.length,console.debug("Datasets::_fetch() - Fetching "+s+" column(s) at "+r+".")),s==0&&console.debug("Datasets::_fetch() - No columns requested");var o="";for(var u in t.columns)o+=t.columns[u]+",";o=o.substring(0,o.length-1);var a=this;e.request({type:"GET",url:config.root+"api/datasets/"+t.dataset_id,data:{data_type:"raw_data",provider:"dataset-column",limit:i,offset:r,indeces:o},success:function(e){var t=new Array(s);for(var r=0;r<s;r++)t[r]=[];for(var r in e.data){var i=e.data[r];for(var o in i){var u=i[o];u!==undefined&&u!=2147483647&&t[o].push(u)}}console.debug("Datasets::_fetch() - Fetching complete."),n(t)}})}})}),define("plugin/models/group",[],function(){return Backbone.Model.extend({defaults:{key:"Data label",date:""},reset:function(){this.clear({silent:!0}).set(this.defaults),this.trigger("reset",this)}})}),define("plugin/models/groups",["plugin/models/group"],function(e){return Backbone.Collection.extend({model:e})}),define("plugin/models/chart",["plugin/models/groups"],function(e){return Backbone.Model.extend({defaults:{id:null,title:"",type:"",date:null,state:"",state_info:"",modified:!1,dataset_id:"",dataset_id_job:""},initialize:function(t){this.groups=new e,this.settings=new Backbone.Model},reset:function(){this.clear({silent:!0}).set(this.defaults),this.groups.reset(),this.settings.clear(),this.trigger("reset",this)},copy:function(e){var t=this;t.clear({silent:!0}).set(this.defaults),t.set(e.attributes),t.settings=e.settings.clone(),t.groups.reset(),e.groups.each(function(e){t.groups.add(e.clone())}),t.trigger("change",t)},state:function(e,t){this.set("state",e),this.set("state_info",t),this.trigger("set:state"),console.debug("Chart:state() - "+t+" ("+e+")")}})});var Visualization=Backbone.Model.extend({defaults:{config:{}},urlRoot:function(){var e="/api/visualizations";return window.galaxy_config&&galaxy_config.root?galaxy_config.root+e:e},initialize:function(e){_.isObject(e.config)&&_.isObject(this.defaults.config)&&_.defaults(e.config,this.defaults.config),this._setUpListeners()},_setUpListeners:function(){},set:function(e,t){if(e==="config"){var n=this.get("config");_.isObject(n)&&(t=_.extend(_.clone(n),t))}return Backbone.Model.prototype.set.call(this,e,t),this},toString:function(){var e=this.get("id")||"";return this.get("title")&&(e+=":"+this.get("title")),"Visualization("+e+")"}}),VisualizationCollection=Backbone.Collection.extend({model:Visualization,url:function(){return galaxy_config.root+"api/visualizations"},initialize:function(e,t){t=t||{}},set:function(e,t){var n=this;e=_.map(e,function(e){var t=n.get(e.id);if(!t)return e;var r=t.toJSON();return _.extend(r,e),r}),Backbone.Collection.prototype.set.call(this,e,t)},toString:function(){return["VisualizationCollection(",[this.historyId,this.length].join(),")"].join("")}});define("mvc/visualization/visualization-model",function(){}),define("plugin/library/storage",["utils/utils","plugin/models/chart","plugin/models/group","mvc/visualization/visualization-model"],function(e,t,n){return Backbone.Model.extend({vis:null,initialize:function(e){this.app=e,this.chart=this.app.chart,this.options=this.app.options,this.id=this.options.id,this.vis=new Visualization({type:"charts",config:{dataset_id:this.options.config.dataset_id,chart_dict:{}}}),this.id&&(this.vis.id=this.id);var t=this.options.config.chart_dict;t&&(this.vis.get("config").chart_dict=t)},save:function(){var e=this.app.chart;this.vis.get("config").chart_dict={};var t=e.get("title");t!=""&&this.vis.set("title",t);var n={attributes:e.attributes,settings:e.settings.attributes,groups:[]};e.groups.each(function(e){n.groups.push(e.attributes)}),this.vis.get("config").chart_dict=n;var r=this;this.vis.save().fail(function(e,t,n){console.error(e,t,n)}).then(function(e){e&&e.id&&(r.id=e.id)})},load:function(){var e=this.vis.get("config").chart_dict;if(!e.attributes)return!1;var t=e.attributes.type;if(!t)return console.debug("Storage::load() - Chart type not provided. Invalid format."),!1;var r=this.app.types.get(t);if(!r)return console.debug("Storage::load() - Chart type not supported. Please re-configure the chart. Resetting chart."),!1;console.debug("Storage::load() - Loading chart type "+t+"."),this.chart.definition=r,this.chart.set(e.attributes),this.chart.state("ok","Loading saved visualization..."),this.chart.settings.set(e.settings);for(var i in e.groups)this.chart.groups.add(new n(e.groups[i]));return this.chart.set("modified",!1),!0}})}),define("utils/deferred",["utils/utils"],function(e){return Backbone.Model.extend({queue:[],process:{},counter:0,initialize:function(){this.on("refresh",function(){if(this.queue.length>0&&this.ready()){var e=this.queue[0];this.queue.splice(0,1),e&&e()}})},execute:function(e){this.queue.push(e),this.trigger("refresh")},register:function(){var t=e.uuid();return this.process[t]=!0,this.counter++,console.debug("Deferred:register() - Registering "+t),t},done:function(e){this.process[e]&&(delete this.process[e],this.counter--,console.debug("Deferred:done() - Unregistering "+e),this.trigger("refresh"))},reset:function(){this.queue=[]},ready:function(){return this.counter==0}})}),define("plugin/views/viewport",["mvc/ui/ui-portlet","mvc/ui/ui-misc","utils/utils"],function(e,t,n){return Backbone.View.extend({container_list:[],canvas_list:[],initialize:function(e,t){this.app=e,this.chart=this.app.chart,this.options=n.merge(t,this.optionsDefault),this.setElement($(this._template())),this._fullscreen(this.$el,90);var r=$("body").css("overflow");this.$el.on("mouseover",function(){$("body").css("overflow","hidden")}).on("mouseout",function(){$("body").css("overflow",r)}),this._createContainer("div");var i=this;this.chart.on("redraw",function(){i._draw(i.chart)}),this.chart.on("set:state",function(){var e=i.$el.find("#info"),t=i.$el.find(".charts-viewport-container"),n=e.find("#icon");n.removeClass(),e.show(),e.find("#text").html(i.chart.get("state_info"));var r=i.chart.get("state");switch(r){case"ok":e.hide(),t.show();break;case"failed":n.addClass("icon fa fa-warning"),t.hide();break;default:n.addClass("icon fa fa-spinner fa-spin"),t.show()}})},show:function(){this.$el.show()},hide:function(){this.$el.hide()},_fullscreen:function(e,t){e.css("height",$(window).height()-t),$(window).resize(function(){e.css("height",$(window).height()-t)})},_createContainer:function(e,t){t=t||1;for(var n in this.container_list)this.container_list[n].remove();this.container_list=[],this.canvas_list=[];for(var n=0;n<t;n++){var r=$(this._templateContainer(e,parseInt(100/t)));this.$el.append(r),this.container_list[n]=r,this.canvas_list[n]=r.find(".charts-viewport-canvas").attr("id")}},_draw:function(e){var t=this,n=this.app.deferred.register(),r=e.get("type");this.chart_definition=e.definition;var i=1;e.settings.get("use_panels")==="true"&&(i=e.groups.length),this._createContainer(this.chart_definition.tag,i),e.state("wait","Please wait...");if(!this.chart_definition.execute||this.chart_definition.execute&&e.get("modified"))this.app.jobs.cleanup(e),e.set("modified",!1);var t=this;require(["plugin/charts/"+this.app.chartPath(r)+"/wrapper"],function(r){if(t.chart_definition.execute)t.app.jobs.request(e,t._defaultSettingsString(e),t._defaultRequestString(e),function(){var i=new r(t.app,{process_id:n,chart:e,request_dictionary:t._defaultRequestDictionary(e),canvas_list:t.canvas_list})},function(){this.app.deferred.done(n)});else var i=new r(t.app,{process_id:n,chart:e,request_dictionary:t._defaultRequestDictionary(e),canvas_list:t.canvas_list})})},_defaultRequestString:function(e){var t="",n=0,r=this;return e.groups.each(function(e){n++;for(var i in r.chart_definition.columns)t+=i+"_"+n+":"+(parseInt(e.get(i))+1)+", "}),t.substring(0,t.length-2)},_defaultSettingsString:function(e){var t="";for(key in e.settings.attributes)t+=key+":"+e.settings.get(key)+", ";return t.substring(0,t.length-2)},_defaultRequestDictionary:function(e){var t={groups:[]};this.chart_definition.execute?t.id=e.get("dataset_id_job"):t.id=e.get("dataset_id");var r=0,i=this;return e.groups.each(function(e){var s={};for(var o in i.chart_definition.columns){var u=i.chart_definition.columns[o];s[o]=n.merge({index:e.get(o)},u)}t.groups.push({key:++r+":"+e.get("key"),columns:s})}),t},_template:function(){return'<div class="charts-viewport"><div id="info" class="info"><span id="icon" class="icon"/><span id="text" class="text" /></div></div>'},_templateContainer:function(e,t){return'<div class="charts-viewport-container" style="width:'+t+'%;">'+'<div id="menu"/>'+"<"+e+' id="'+n.uuid()+'" class="charts-viewport-canvas">'+"</div>"}})}),define("plugin/library/screenshot",["libs/underscore"],function(e){function t(e){e.$el.find("svg").length>0?r(e):n(e)}function n(e){try{var t=e.$el.find(".jqplot-target"),n=t.jqplotToImageStr({});n&&(window.location.href=n.replace("image/png","image/octet-stream"))}catch(r){console.debug("FAILED - Screenshot::_fromCanvas() - "+r),e.error&&e.error("Please reduce your chart to a single panel and try again.")}}function r(e){var t=e.$el,n=e.url,r=e.name,s=new XMLSerializer,o=document.createElement("canvas"),u=$(o),a=t.find("svg").length,f=t.find("svg").first(),l=parseInt(f.css("height")),c=parseInt(f.css("width"));u.attr("width",c*a),u.attr("height",l),(!o.getContext||!o.getContext("2d"))&&alert("Your browser doesn't support this feature, please use a modern browser");var h=o.getContext("2d"),p=0;t.find("svg").each(function(){var e=$(this);e.attr({version:"1.1",xmlns:"http://www.w3.org/2000/svg",width:c,height:l});var t=s.serializeToString(this);h.drawSvg(t,p,0,c,l),p+=c}),window.location.href=i(o,o.getContext("2d"),"white").replace("image/png","image/octet-stream")}function i(e,t,n){var r=e.width,i=e.height,s;if(n){s=t.getImageData(0,0,r,i);var o=t.globalCompositeOperation;t.globalCompositeOperation="destination-over",t.fillStyle=n,t.fillRect(0,0,r,i)}var u=e.toDataURL("image/png");return n&&(t.clearRect(0,0,r,i),t.putImageData(s,0,0),t.globalCompositeOperation=o),u}function s(e){window.location.href="data:none/none;base64,"+btoa(a(e).string)}function o(e){for(var t in document.styleSheets){var n=document.styleSheets[t],r=n.cssRules;if(r)for(var i=0,s=r.length;i<s;i++)try{e.find(r[i].selectorText).each(function(e,t){t.style.cssText+=r[i].style.cssText})}catch(o){}}}function u(e){var t=a(e),n={filename:name||"chart",type:"application/pdf",height:t.height,width:t.width,scale:2,svg:t.string},r=$("body"),i=r.find("#viewport-form");i.length===0&&(i=$("<form>",{id:"viewport-form",method:"post",action:"http://export.highcharts.com/",display:"none"}),r.append(i)),i.empty();for(name in n){var s=$("<input/>",{type:"hidden",name:name,value:n[name]});i.append(s)}try{i.submit()}catch(o){console.log(o)}}function a(e){if(e.$el.find("svg").length==0&&e.error){e.error("No SVG found. This chart type does not support SVG/PDF export.");return}var t=e.$el,n=t.find("svg").length,r=parseInt(t.find("svg").first().css("height")),i=parseInt(t.find("svg").first().css("width")),s=new XMLSerializer,u=$("<svg/>");u.attr({version:"1.1",xmlns:"http://www.w3.org/2000/svg",width:i*n,height:r});var a="",f=0;return t.find("svg").each(function(){var e=$(this).clone();o(e);var t=$('<g transform="translate('+f+', 0)">');t.append(e.find("g").first()),u.append(t),f+=i}),{string:s.serializeToString(u[0]),height:r,width:i}}return{createPNG:t,createSVG:s,createPDF:u}}),define("plugin/views/viewer",["utils/utils","mvc/ui/ui-misc","mvc/ui/ui-portlet","plugin/views/viewport","plugin/library/screenshot"],function(e,t,n,r,i){return Backbone.View.extend({initialize:function(e,s){this.app=e,this.chart=this.app.chart,this.viewport_view=new r(e);var o=this;this.message=new t.Message;var u=new t.ButtonMenu({icon:"fa-camera",title:"Screenshot",tooltip:"Download as PNG, SVG or PDF file"});u.addMenu({id:"button-png",title:"Save as PNG",icon:"fa-file",onclick:function(){o._wait(o.chart,function(){i.createPNG({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}),u.addMenu({id:"button-svg",title:"Save as SVG",icon:"fa-file-text-o",onclick:function(){o._wait(o.chart,function(){i.createSVG({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}),u.addMenu({id:"button-png",title:"Save as PDF",icon:"fa-file-o",onclick:function(){o.app.modal.show({title:"Send chart data for PDF creation",body:"Galaxy does not provide integrated PDF export scripts. You may click 'Continue' to create the PDF by using a 3rd party service (https://export.highcharts.com)",buttons:{Cancel:function(){o.app.modal.hide()},Continue:function(){o.app.modal.hide(),o._wait(o.chart,function(){i.createPDF({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}})}}),this.portlet=new n.View({icon:"fa-bar-chart-o",title:"Viewport",operations:{edit_button:new t.ButtonIcon({icon:"fa-edit",tooltip:"Customize this chart",title:"Editor",onclick:function(){o._wait(o.chart,function(){o.app.go("editor")})}}),picture_button_menu:u}}),this.portlet.append(this.message.$el),this.portlet.append(this.viewport_view.$el),this.setElement(this.portlet.$el);var o=this;this.chart.on("change:title",function(){o._refreshTitle()})},show:function(){this.$el.show(),$(window).trigger("resize")},hide:function(){this.$el.hide()},_refreshTitle:function(){var e=this.chart.get("title");this.portlet.title(e)},_wait:function(e,t){this.app.deferred.ready()?t():this.message.update({message:"Your chart is currently being processed. Please wait and try again."})}})}),define("mvc/ui/ui-tabs",["utils/utils"],function(e){var t=Backbone.View.extend({optionsDefault:{title_new:"",operations:null,onnew:null,max:null,onchange:null},initialize:function(t){this.visible=!1,this.$nav=null,this.$content=null,this.first_tab=null,this.current_id=null,this.options=e.merge(t,this.optionsDefault);var n=$(this._template(this.options));this.$nav=n.find(".tab-navigation"),this.$content=n.find(".tab-content"),this.setElement(n),this.list={};var r=this;this.options.operations&&$.each(this.options.operations,function(e,t){t.$el.prop("id",e),r.$nav.find(".operations").append(t.$el)});if(this.options.onnew){var i=$(this._template_tab_new(this.options));this.$nav.append(i),i.tooltip({title:"Add a new tab",placement:"bottom",container:r.$el}),i.on("click",function(e){i.tooltip("hide"),r.options.onnew()})}},size:function(){return _.size(this.list)},current:function(){return this.$el.find(".tab-pane.active").attr("id")},add:function(e){var t=this,n=e.id,r=$(this._template_tab(e)),i=$(this._template_tab_content(e));this.list[n]=e.ondel?!0:!1,this.options.onnew?this.$nav.find("#new-tab").before(r):this.$nav.append(r),i.append(e.$el),this.$content.append(i),this.size()==1&&(r.addClass("active"),i.addClass("active"),this.first_tab=n),this.options.max&&this.size()>=this.options.max&&this.$el.find("#new-tab").hide();if(e.ondel){var s=r.find("#delete");s.tooltip({title:"Delete this tab",placement:"bottom",container:t.$el}),s.on("click",function(){return s.tooltip("destroy"),t.$el.find(".tooltip").remove(),e.ondel(),!1})}r.on("click",function(r){r.preventDefault(),e.onclick?e.onclick():t.show(n)}),this.current_id||(this.current_id=n)},del:function(e){this.$el.find("#tab-"+e).remove(),this.$el.find("#"+e).remove(),this.first_tab==e&&(this.first_tab=null),this.first_tab!=null&&this.show(this.first_tab),this.list[e]&&delete this.list[e],this.size()<this.options.max&&this.$el.find("#new-tab").show()},delRemovable:function(){for(var e in this.list)this.del(e)},show:function(e){this.$el.fadeIn("fast"),this.visible=!0,e&&(this.$el.find("#tab-"+this.current_id).removeClass("active"),this.$el.find("#"+this.current_id).removeClass("active"),this.$el.find("#tab-"+e).addClass("active"),this.$el.find("#"+e).addClass("active"),this.current_id=e),this.options.onchange&&this.options.onchange(e)},hide:function(){this.$el.fadeOut("fast"),this.visible=!1},hideOperation:function(e){this.$nav.find("#"+e).hide()},showOperation:function(e){this.$nav.find("#"+e).show()},setOperation:function(e,t){var n=this.$nav.find("#"+e);n.off("click"),n.on("click",t)},title:function(e,t){var n=this.$el.find("#tab-title-text-"+e);return t&&n.html(t),n.html()},retitle:function(e){var t=0;for(var n in this.list)this.title(n,++t+": "+e)},_template:function(e){return'<div class="ui-tabs tabbable tabs-left"><ul id="tab-navigation" class="tab-navigation nav nav-tabs"><div class="operations" style="float: right; margin-bottom: 4px;"></div></ul><div id="tab-content" class="tab-content"/></div>'},_template_tab_new:function(e){return'<li id="new-tab"><a href="javascript:void(0);"><i class="ui-tabs-add fa fa-plus-circle"/>'+e.title_new+"</a>"+"</li>"},_template_tab:function(e){var t='<li id="tab-'+e.id+'" class="tab-element">'+'<a id="tab-title-link-'+e.id+'" title="" href="#'+e.id+'" data-original-title="">'+'<span id="tab-title-text-'+e.id+'" class="tab-title-text">'+e.title+"</span>";return e.ondel&&(t+='<i id="delete" class="ui-tabs-delete fa fa-minus-circle"/>'),t+="</a></li>",t},_template_tab_content:function(e){return'<div id="'+e.id+'" class="tab-pane"/>'}});return{View:t}}),define("mvc/ui/ui-table",["utils/utils"],function(e){var t=Backbone.View.extend({row:null,row_count:0,optionsDefault:{content:"No content available.",onchange:null,ondblclick:null,onconfirm:null,cls:"ui-table",cls_tr:""},events:{click:"_onclick",dblclick:"_ondblclick"},initialize:function(t){this.options=e.merge(t,this.optionsDefault);var n=$(this._template(this.options));this.$thead=n.find("thead"),this.$tbody=n.find("tbody"),this.$tmessage=n.find("tmessage"),this.setElement(n),this.row=this._row()},addHeader:function(e){var t=$("<th></th>");t.append(e),this.row.append(t)},appendHeader:function(){this.$thead.append(this.row),this.row=$("<tr></tr>")},add:function(e,t,n){var r=$("<td></td>");t&&r.css("width",t),n&&r.css("text-align",n),r.append(e),this.row.append(r)},append:function(e,t){this._commit(e,t,!1)},prepend:function(e,t){this._commit(e,t,!0)},get:function(e){return this.$el.find("#"+e)},del:function(e){var t=this.$tbody.find("#"+e);t.length>0&&(t.remove(),this.row_count--,this._refresh())},delAll:function(){this.$tbody.empty(),this.row_count=0,this._refresh()},value:function(e){this.before=this.$tbody.find(".current").attr("id"),e!==undefined&&(this.$tbody.find("tr").removeClass("current"),e&&this.$tbody.find("#"+e).addClass("current"));var t=this.$tbody.find(".current").attr("id");return t===undefined?null:(t!=this.before&&this.options.onchange&&this.options.onchange(e),t)},size:function(){return this.$tbody.find("tr").length},_commit:function(e,t,n){this.del(e),this.row.attr("id",e),n?this.$tbody.prepend(this.row):this.$tbody.append(this.row),t&&(this.row.hide(),this.row.fadeIn()),this.row=this._row(),this.row_count++,this._refresh()},_row:function(){return $('<tr class="'+this.options.cls_tr+'"></tr>')},_onclick:function(e){var t=this.value(),n=$(e.target).closest("tr").attr("id");n!=""&&n&&t!=n&&(this.options.onconfirm?this.options.onconfirm(n):this.value(n))},_ondblclick:function(e){var t=this.value();t&&this.options.ondblclick&&this.options.ondblclick(t)},_refresh:function(){this.row_count==0?this.$tmessage.show():this.$tmessage.hide()},_template:function(e){return'<div><table class="'+e.cls+'">'+"<thead></thead>"+"<tbody></tbody>"+"</table>"+"<tmessage>"+e.content+"</tmessage>"+"<div>"}});return{View:t}}),define("plugin/views/group",["mvc/ui/ui-table","mvc/ui/ui-misc","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(r,i){this.app=r;var s=this;this.chart=this.app.chart,this.group=i.group,this.group_key=new t.Input({placeholder:"Data label",onchange:function(e){s.group.set("key",e)}}),this.table=new e.View({content:"No data column."});var o=$("<div/>");o.append(n.wrap((new t.Label({title:"Provide a label:"})).$el)),o.append(n.wrap(this.group_key.$el)),o.append(n.wrap((new t.Label({title:"Select columns:"})).$el)),o.append(n.wrap(this.table.$el)),this.setElement(o);var s=this;this.chart.on("change:dataset_id",function(){s._refreshTable()}),this.chart.on("change:type",function(){s._refreshTable()}),this.group.on("change:key",function(){s._refreshGroupKey()}),this.group.on("change",function(){s._refreshGroup()}),this._refreshTable(),this._refreshGroupKey(),this._refreshGroup()},_refreshTable:function(){var e=this.chart.get("dataset_id"),n=this.chart.get("type");if(!e||!n)return;var r=this,i=this.chart.definition;this.table.delAll();var s={};for(var o in i.columns){var u=i.columns[o];if(!u){console.debug("Group::_refreshTable() - Skipping column definition.");continue}var a=new t.Select.View({id:"select_"+o,wait:!0}),f=u.title;u.is_unique&&(f+=" (all data labels)"),this.table.add(f,"25%"),this.table.add(a.$el),this.table.append(o),s[o]=a}this.chart.state("wait","Loading metadata...");var l=this.app.deferred.register(),c={id:e,success:function(e){for(var t in s)r._addRow(t,e,s,i.columns[t]);r.chart.state("ok","Metadata initialized..."),r.app.deferred.done(l)}};this.app.datasets.request(c)},_addRow:function(e,t,n,r){var i=this,s=r.is_label,o=r.is_auto,u=r.is_numeric,a=r.is_unique,f=r.is_zero,l=[],c=n[e];o&&l.push({label:"Column: Row Number",value:"auto"}),f&&l.push({label:"Column: None",value:"zero"});var h=t.metadata_column_types;for(var p in h){var d=!1;h[p]=="int"||h[p]=="float"?d=u:d=s,d&&l.push({label:"Column: "+(parseInt(p)+1)+" ["+h[p]+"]",value:p})}c.update(l),a&&this.chart.groups.first()&&this.group.set(e,this.chart.groups.first().get(e));if(!c.exists(this.group.get(e))){var v=c.first();console.debug('Group()::_addRow() - Switching model value from "'+this.group.get(e)+'" to "'+v+'".'),this.group.set(e,v)}c.value(this.group.get(e)),this.group.off("change:"+e),this.group.on("change:"+e,function(){c.value(i.group.get(e))}),c.setOnChange(function(t){a?i.chart.groups.each(function(n){n.set(e,t)}):i.group.set(e,t),i.chart.set("modified",!0)}),c.show()},_refreshGroup:function(){this.group.set("date",n.time())},_refreshGroupKey:function(){var e=this.group.get("key");e===undefined&&(e=""),e!=this.group_key.value()&&this.group_key.value(e)}})}),define("plugin/library/ui-table-form",["mvc/ui/ui-table","mvc/ui/ui-misc","utils/utils"],function(e,t,n){var r=Backbone.View.extend({optionsDefault:{title:"",content:"",mode:""},list:[],initialize:function(r,i){this.app=r,this.options=n.merge(i,this.optionsDefault),this.table_title=new t.Label({title:this.options.title}),this.table=new e.View({content:this.options.content});var s=$('<div class="ui-table-form"/>');this.options.title&&s.append(n.wrap(this.table_title.$el)),s.append(n.wrap(this.table.$el)),this.setElement(s)},title:function(e){this.table_title.title(e)},update:function(e,t){this.table.delAll(),this.list=[];for(var n in e)this._add(e[n].id||n,e[n],t);for(var n in this.list)this.list[n].trigger("change")},_add:function(e,n,r){var i=this,s=null,o=n.type;switch(o){case"text":s=new t.Input({id:"field-"+e,placeholder:n.placeholder,value:r.get(e),onchange:function(t){r.set(e,t)}});break;case"radiobutton":s=new t.RadioButton.View({id:"field-"+e,data:n.data,value:r.get(e),onchange:function(t){r.set(e,t);var s=_.findWhere(n.data,{value:t});if(s&&s.operations){var o=s.operations;for(var u in o.show){var a=o.show[u];i.table.get(a).show()}for(var u in o.hide){var a=o.hide[u];i.table.get(a).hide()}}}});break;case"select":s=new t.Select.View({id:"field-"+e,data:n.data,value:r.get(e),onchange:function(t){r.set(e,t);var s=_.findWhere(n.data,{value:t});if(s&&s.operations){var o=s.operations;for(var u in o.show){var a=o.show[u];i.table.get(a).show()}for(var u in o.hide){var a=o.hide[u];i.table.get(a).hide()}}}});break;case"dataset":s=new t.Select.View({id:"field-"+e,onchange:function(t){r.set(e,t)}}),i.app.datasets.on("all",function(){var t=[];i.app.datasets.each(function(e){e.get("datatype_id")==n.data&&t.push({value:e.get("id"),label:e.get("name")})}),s.update(t),r.get(e)||r.set(e,s.first()),s.value(r.get(e))}),i.app.datasets.trigger("all.datasets");break;case"textarea":s=new t.Textarea({id:"field-"+e,onchange:function(){r.set(e,s.value())}});break;case"separator":s=$("<div/>");break;default:s=new t.Input({id:"field-"+e,placeholder:n.placeholder,type:n.type,onchange:function(){r.set(e,s.value())}})}if(o!="separator"){r.get(e)||r.set(e,n.init),s.value(r.get(e)),this.list[e]=s;var u=$("<div/>");u.append(s.$el),n.info&&u.append('<div 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o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),f=i.pos[0]+(s.offsetLeft||0),l=p.range()[0]+a.top+(s.offsetTop||0),c=h.range()[0]+a.left+(s.offsetLeft||0),d=i.pos[1]+(s.offsetTop||0),v=n.tickFormat()(t.x()(i.point,i.pointIndex)),m=r.tickFormat()(t.y()(i.point,i.pointIndex));T!=null&&e.tooltip.show([f,l],T(i.series.key,v,m,i,B),"n",1,s,"x-nvtooltip"),N!=null&&e.tooltip.show([c,d],N(i.series.key,v,m,i,B),"e",1,s,"y-nvtooltip"),C!=null&&e.tooltip.show([o,u],C(i.series.key,v,m,i.point.tooltip,i,B),i.value<0?"n":"s",null,s)},H=[{key:"Magnify",disabled:!0}];return t.dispatch.on("elementMouseout.tooltip",function(e){A.tooltipHide(e),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-distx-"+e.pointIndex).attr("y1",0),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" 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v.size(2.2).sizeDomain([2.2,2.2]),v.dispatch.on("elementClick.area",function(e){m.areaClick(e)}),v.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],m.tooltipShow(e)}),v.dispatch.on("elementMouseout.tooltip",function(e){m.tooltipHide(e)}),g.dispatch=m,g.scatter=v,d3.rebind(g,v,"interactive","size","xScale","yScale","zScale","xDomain","yDomain","xRange","yRange","sizeDomain","forceX","forceY","forceSize","clipVoronoi","useVoronoi","clipRadius","highlightPoint","clearHighlights"),g.options=e.utils.optionsFunc.bind(g),g.x=function(e){return arguments.length?(o=d3.functor(e),g):o},g.y=function(e){return arguments.length?(u=d3.functor(e),g):u},g.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,g):t},g.width=function(e){return 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target="'+e.target+'">';return e.icon&&(t+='<i class="fa '+e.icon+'"></i>'),t+=" "+e.title+"</a>"+"</li>",t},_templateMenu:function(){return'<ul class="menu dropdown-menu pull-right" role="menu"></ul>'},_templateDivider:function(){return'<li class="divider"></li>'},_template:function(e){var t="",n="";e.title?t="width: auto;":n="margin: 0px;";var r='<div id="'+e.id+'" style="float: '+e.floating+"; "+t+'" class="dropdown '+e.cls+'">'+'<div class="root button dropdown-toggle" data-toggle="dropdown" style="'+n+'">'+'<i class="icon fa '+e.icon+'"/>';return e.title&&(r+=' <span class="title">'+e.title+"</span>"),r+="</div></div>",r}})}),define("mvc/ui/ui-misc",["utils/utils","mvc/ui/ui-select-default","mvc/ui/ui-slider","mvc/ui/ui-options","mvc/ui/ui-drilldown","mvc/ui/ui-button-menu","mvc/ui/ui-modal"],function(e,t,n,r,i,s,o){var u=Backbone.View.extend({optionsDefault:{url:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options))},_template:function(e){return'<img class="ui-image '+e.cls+'" src="'+e.url+'"/>'}}),a=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options))},title:function(e){this.$el.html(e)},_template:function(e){return'<label class="ui-label '+e.cls+'">'+e.title+"</label>"},value:function(){return options.title}}),f=Backbone.View.extend({optionsDefault:{floating:"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){return'<div><span class="fa '+e.icon+'" class="ui-icon"/> '+e.title+"</div>"}}),l=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button btn btn-default",icon:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",function(){$(".tooltip").hide(),t.onclick&&t.onclick()}),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){var t='<button id="'+e.id+'" type="submit" style="float: '+e.floating+';" type="button" class="'+e.cls+'">';return e.icon&&(t+='<i class="icon fa '+e.icon+'"></i> '),t+=e.title+"</button>",t}}),c=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button-icon",icon:"",tooltip:"",onclick:null},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.$button=this.$el.find(".button");var n=this;$(this.el).on("click",function(){$(".tooltip").hide(),t.onclick&&!n.disabled&&t.onclick()}),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},disable:function(){this.$button.addClass("disabled"),this.disabled=!0},enable:function(){this.$button.removeClass("disabled"),this.disabled=!1},setIcon:function(e){this.$("i").removeClass(this.options.icon).addClass(e),this.options.icon=e},_template:function(e){var t="";e.title&&(t="width: auto;");var n='<div id="'+e.id+'" style="float: '+e.floating+"; "+t+'" class="'+e.cls+'">';return e.title?n+='<div class="button"><i class="icon fa '+e.icon+'"/> '+'<span class="title">'+e.title+"</span>"+"</div>":n+='<i class="icon fa '+e.icon+'"/>',n+="</div>",n}}),h=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",t.onclick)},_template:function(e){return'<div><a href="javascript:void(0)" class="ui-anchor '+e.cls+'">'+e.title+"</a></div>"}}),p=Backbone.View.extend({optionsDefault:{message:null,status:"info",persistent:!1},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement("<div></div>"),this.options.message&&this.update(this.options)},update:function(t){this.options=e.merge(t,this.optionsDefault);if(t.message!=""){this.$el.html(this._template(this.options)),this.$el.find(".alert").append(t.message),this.$el.fadeIn(),this.timeout&&window.clearTimeout(this.timeout);if(!t.persistent){var n=this;this.timeout=window.setTimeout(function(){n.$el.is(":visible")?n.$el.fadeOut():n.$el.hide()},3e3)}}else this.$el.fadeOut()},_template:function(e){return'<div class="ui-message alert alert-'+e.status+'"/>'}}),d=Backbone.View.extend({optionsDefault:{onclick:null,searchword:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options));var n=this;this.options.onclick&&this.$el.on("submit",function(e){var t=n.$el.find("#search");n.options.onclick(t.val())})},_template:function(e){return'<div class="ui-search"><form onsubmit="return false;"><input id="search" class="form-control input-sm" type="text" name="search" placeholder="Search..." value="'+e.searchword+'">'+'<button type="submit" class="btn search-btn">'+'<i class="fa fa-search"></i>'+"</button>"+"</form>"+"</div>"}}),v=Backbone.View.extend({optionsDefault:{type:"text",placeholder:"",disabled:!1,visible:!0,cls:"",area:!1},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.options.value!==undefined&&this.value(this.options.value),this.options.disabled&&this.$el.prop("disabled",!0),this.options.visible||this.$el.hide();var n=this;this.$el.on("input",function(){n.options.onchange&&n.options.onchange(n.$el.val())})},value:function(e){return e!==undefined&&this.$el.val(e),this.$el.val()},_template:function(e){return e.area?'<textarea id="'+e.id+'" class="ui-textarea '+e.cls+'"></textarea>':'<input id="'+e.id+'" type="'+e.type+'" value="'+e.value+'" placeholder="'+e.placeholder+'" class="ui-input '+e.cls+'">'}}),m=Backbone.View.extend({initialize:function(e){this.options=e,this.setElement(this._template(this.options)),this.options.value!==undefined&&this.value(this.options.value)},value:function(e){return e!==undefined&&this.$("hidden").val(e),this.$("hidden").val()},_template:function(e){var t='<div id="'+e.id+'" >';return e.info&&(t+="<label>"+e.info+"</label>"),t+='<hidden value="'+e.value+'"/>'+"</div>",t}}),g=Backbone.View.extend({optionsDefault:{class_add:"fa fa-square-o",class_remove:"fa fa-check-square-o",class_partial:"fa fa-minus-square-o",value:!1},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement($("<div/>")),this.value(Boolean(this.options.value));var n=this;this.$el.on("click",function(){n.value(!n.current)})},value:function(e){return e!==undefined&&(this.current=e,e?this.$el.removeClass().addClass("ui-checkbutton").addClass(this.options.class_remove):this.$el.removeClass().addClass("ui-checkbutton").addClass(this.options.class_add),this.options.onchange&&this.options.onchange(e)),this.current}});return{Anchor:h,Button:l,ButtonIcon:c,ButtonMenu:s,Icon:f,Image:u,Input:v,Label:a,Message:p,Modal:o,RadioButton:r.RadioButton,Checkbox:r.Checkbox,Radio:r.Radio,CheckButton:g,Searchbox:d,Select:t,Hidden:m,Slider:n,Drilldown:i}}),define("plugin/library/jobs",["utils/utils"],function(e){return Backbone.Model.extend({initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e,t,n,r,i){var s=this;e.state("wait","Requesting job results...");var o=e.get("dataset_id_job");o!=""?s._wait(e,r,i):s._submit(e,t,n,r,i)},cleanup:function(t){var n=this,r=t.get("dataset_id_job");r!=""&&(e.request({type:"PUT",url:config.root+"api/histories/none/contents/"+r,data:{deleted:!0},success:function(){n._refreshHdas()}}),t.set("dataset_id_job",""))},_submit:function(t,n,r,i,s){var o=this,u=t.id,a=t.get("type"),f=t.definition;data={tool_id:"charts",inputs:{input:{id:t.get("dataset_id"),src:"hda"},module:f.execute,columns:r,settings:n}},t.state("wait","Sending job request..."),e.request({type:"POST",url:config.root+"api/tools",data:data,success:function(e){if(!e.outputs||e.outputs.length==0)t.state("failed","Job submission failed. No response."),s&&s();else{o._refreshHdas();var n=e.outputs[0];t.state("wait","Your job has been queued. You may close the browser window. The job will run in the background."),t.set("dataset_id_job",n.id),o.app.storage.save(),o._wait(t,i,s)}},error:function(e){var n="";e&&e.message&&e.message.data&&e.message.data.input&&(n=e.message.data.input+"."),t.state("failed","This visualization requires the 'charts' tool. Please make sure it is installed. "+n),s&&s()}})},_wait:function(t,n,r){var i=this;e.request({type:"GET",url:config.root+"api/datasets/"+t.get("dataset_id_job"),data:{},success:function(e){var s=!1;switch(e.state){case"ok":t.state("wait","Job completed successfully..."),n&&n(e),s=!0;break;case"error":t.state("failed","Job has failed. Please check the history for details."),r&&r(e),s=!0;break;case"running":t.state("wait","Your job is running. You may close the browser window. The job will continue in the background.")}s||setTimeout(function(){i._wait(t,n,r)},i.app.config.get("query_timeout"))}})},_refreshHdas:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.refreshContents()}})}),define("plugin/library/datasets",["utils/utils"],function(e){return Backbone.Collection.extend({list:{},cache:{},initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e){e.groups?this._get_blocks(e):this._get_dataset(e.id,e.success,e.error)},_get_blocks:function(e){function c(i){l._get(i,function(){var s=!1;for(var o in e.groups){destination_group=e.groups[o],source_group=i.groups[o],destination_group.values||(destination_group.values=[]),destination_group.values=destination_group.values.concat(source_group.values);if(source_group.values.length==0){s=!0;break}}if(++f<u&&!s){n&&n(parseInt(f/u*100));var l=i.start+r;i=$.extend(!0,a,{start:l}),c(i)}else t()})}var t=e.success,n=e.progress,r=this.app.config.get("query_limit"),i=e.start||0,s=i+e.query_limit||i+this.app.config.get("query_limit"),o=Math.abs(s-i);if(o<=0){console.debug("FAILED - Datasets::request() - Invalid query range.");return}var u=Math.ceil(o/r)||1,a=$.extend(!0,{},e),f=0,l=this,h=$.extend(!0,a,{start:i});this._get_dataset(e.id,function(){c(h)})},_get_dataset:function(t,n,r){var i=this.list[t];if(i){n(i);return}var s=this;e.request({type:"GET",url:config.root+"api/datasets/"+t,success:function(e){switch(e.state){case"error":r&&r(e);break;default:s.list[t]=e,n(e)}}})},_block_id:function(e,t){return e.id+"_"+e.start+"_"+e.start+this.app.config.get("query_limit")+"_"+t},_get:function(e,t){e.start=e.start||0;var n=[],r={},i=0;for(var s in e.groups){var o=e.groups[s];for(var u in o.columns){var a=o.columns[u].index,f=this._block_id(e,a);if(this.cache[f]||a==="auto"||a==="zero")continue;!r[a]&&a!==undefined&&(r[a]=i,n.push(a),i++)}}if(n.length==0){this._fill_from_cache(e),t(e);return}var l={dataset_id:e.id,start:e.start,columns:n},c=this;this._fetch(l,function(r){for(var i in r){var s=n[i],o=c._block_id(e,s);c.cache[o]=r[i]}c._fill_from_cache(e),t(e)})},_fill_from_cache:function(e){var t=e.start;console.debug("Datasets::_fill_from_cache() - Filling request from cache at "+t+".");var n=0;for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s],u=this._block_id(e,o.index),a=this.cache[u];a&&(n=Math.max(n,a.length))}}n==0&&console.debug("Datasets::_fill_from_cache() - Reached data range limit.");for(var r in e.groups){var i=e.groups[r];i.values=[];for(var f=0;f<n;f++)i.values[f]={x:parseInt(f)+t}}for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s];switch(o.index){case"auto":for(var f=0;f<n;f++){var l=i.values[f];l[s]=parseInt(f)+t}break;case"zero":for(var f=0;f<n;f++){var l=i.values[f];l[s]=0}break;default:var u=this._block_id(e,o.index),a=this.cache[u];for(var f=0;f<n;f++){var l=i.values[f],c=a[f];isNaN(c)&&!o.is_label&&(c=0),l[s]=c}}}}},_fetch:function(t,n){var r=t.start?t.start:0,i=this.app.config.get("query_limit"),s=0;t.columns&&(s=t.columns.length,console.debug("Datasets::_fetch() - Fetching "+s+" column(s) at "+r+".")),s==0&&console.debug("Datasets::_fetch() - No columns requested");var o="";for(var u in t.columns)o+=t.columns[u]+",";o=o.substring(0,o.length-1);var a=this;e.request({type:"GET",url:config.root+"api/datasets/"+t.dataset_id,data:{data_type:"raw_data",provider:"dataset-column",limit:i,offset:r,indeces:o},success:function(e){var t=new Array(s);for(var r=0;r<s;r++)t[r]=[];for(var r in e.data){var i=e.data[r];for(var o in i){var u=i[o];u!==undefined&&u!=2147483647&&t[o].push(u)}}console.debug("Datasets::_fetch() - Fetching complete."),n(t)}})}})}),define("plugin/models/group",[],function(){return Backbone.Model.extend({defaults:{key:"Data label",date:""},reset:function(){this.clear({silent:!0}).set(this.defaults),this.trigger("reset",this)}})}),define("plugin/models/groups",["plugin/models/group"],function(e){return Backbone.Collection.extend({model:e})}),define("plugin/models/chart",["plugin/models/groups"],function(e){return Backbone.Model.extend({defaults:{id:null,title:"",type:"",date:null,state:"",state_info:"",modified:!1,dataset_id:"",dataset_id_job:""},initialize:function(t){this.groups=new e,this.settings=new Backbone.Model},reset:function(){this.clear({silent:!0}).set(this.defaults),this.groups.reset(),this.settings.clear(),this.trigger("reset",this)},copy:function(e){var t=this;t.clear({silent:!0}).set(this.defaults),t.set(e.attributes),t.settings=e.settings.clone(),t.groups.reset(),e.groups.each(function(e){t.groups.add(e.clone())}),t.trigger("change",t)},state:function(e,t){this.set("state",e),this.set("state_info",t),this.trigger("set:state"),console.debug("Chart:state() - "+t+" ("+e+")")}})});var Visualization=Backbone.Model.extend({defaults:{config:{}},urlRoot:function(){var e="/api/visualizations";return window.galaxy_config&&galaxy_config.root?galaxy_config.root+e:e},initialize:function(e){_.isObject(e.config)&&_.isObject(this.defaults.config)&&_.defaults(e.config,this.defaults.config),this._setUpListeners()},_setUpListeners:function(){},set:function(e,t){if(e==="config"){var n=this.get("config");_.isObject(n)&&(t=_.extend(_.clone(n),t))}return Backbone.Model.prototype.set.call(this,e,t),this},toString:function(){var e=this.get("id")||"";return this.get("title")&&(e+=":"+this.get("title")),"Visualization("+e+")"}}),VisualizationCollection=Backbone.Collection.extend({model:Visualization,url:function(){return galaxy_config.root+"api/visualizations"},initialize:function(e,t){t=t||{}},set:function(e,t){var n=this;e=_.map(e,function(e){var t=n.get(e.id);if(!t)return e;var r=t.toJSON();return _.extend(r,e),r}),Backbone.Collection.prototype.set.call(this,e,t)},toString:function(){return["VisualizationCollection(",[this.historyId,this.length].join(),")"].join("")}});define("mvc/visualization/visualization-model",function(){}),define("plugin/library/storage",["utils/utils","plugin/models/chart","plugin/models/group","mvc/visualization/visualization-model"],function(e,t,n){return Backbone.Model.extend({vis:null,initialize:function(e){this.app=e,this.chart=this.app.chart,this.options=this.app.options,this.id=this.options.id,this.vis=new Visualization({type:"charts",config:{dataset_id:this.options.config.dataset_id,chart_dict:{}}}),this.id&&(this.vis.id=this.id);var t=this.options.config.chart_dict;t&&(this.vis.get("config").chart_dict=t)},save:function(){var e=this.app.chart;this.vis.get("config").chart_dict={};var t=e.get("title");t!=""&&this.vis.set("title",t);var n={attributes:e.attributes,settings:e.settings.attributes,groups:[]};e.groups.each(function(e){n.groups.push(e.attributes)}),this.vis.get("config").chart_dict=n;var r=this;this.vis.save().fail(function(e,t,n){console.error(e,t,n)}).then(function(e){e&&e.id&&(r.id=e.id)})},load:function(){var e=this.vis.get("config").chart_dict;if(!e.attributes)return!1;var t=e.attributes.type;if(!t)return console.debug("Storage::load() - Chart type not provided. Invalid format."),!1;var r=this.app.types.get(t);if(!r)return console.debug("Storage::load() - Chart type not supported. Please re-configure the chart. Resetting chart."),!1;console.debug("Storage::load() - Loading chart type "+t+"."),this.chart.definition=r,this.chart.set(e.attributes),this.chart.state("ok","Loading saved visualization..."),this.chart.settings.set(e.settings);for(var i in e.groups)this.chart.groups.add(new n(e.groups[i]));return this.chart.set("modified",!1),!0}})}),define("utils/deferred",["utils/utils"],function(e){return Backbone.Model.extend({queue:[],process:{},counter:0,initialize:function(){this.on("refresh",function(){if(this.queue.length>0&&this.ready()){var e=this.queue[0];this.queue.splice(0,1),e&&e()}})},execute:function(e){this.queue.push(e),this.trigger("refresh")},register:function(){var t=e.uuid();return this.process[t]=!0,this.counter++,console.debug("Deferred:register() - Registering "+t),t},done:function(e){this.process[e]&&(delete this.process[e],this.counter--,console.debug("Deferred:done() - Unregistering "+e),this.trigger("refresh"))},reset:function(){this.queue=[]},ready:function(){return this.counter==0}})}),define("plugin/views/viewport",["mvc/ui/ui-portlet","mvc/ui/ui-misc","utils/utils"],function(e,t,n){return Backbone.View.extend({container_list:[],canvas_list:[],initialize:function(e,t){this.app=e,this.chart=this.app.chart,this.options=n.merge(t,this.optionsDefault),this.setElement($(this._template())),this._fullscreen(this.$el,50);var r=$("body").css("overflow");this.$el.on("mouseover",function(){$("body").css("overflow","hidden")}).on("mouseout",function(){$("body").css("overflow",r)}),this._createContainer("div");var i=this;this.chart.on("redraw",function(){i._draw(i.chart)}),this.chart.on("set:state",function(){var e=i.$el.find("#info"),t=i.$el.find(".charts-viewport-container"),n=e.find("#icon");n.removeClass(),e.show(),e.find("#text").html(i.chart.get("state_info"));var r=i.chart.get("state");switch(r){case"ok":e.hide(),t.show();break;case"failed":n.addClass("icon fa fa-warning"),t.hide();break;default:n.addClass("icon fa fa-spinner fa-spin"),t.show()}})},show:function(){this.$el.show()},hide:function(){this.$el.hide()},_fullscreen:function(e,t){e.css("height",$(window).height()-t),$(window).resize(function(){e.css("height",$(window).height()-t)})},_createContainer:function(e,t){t=t||1;for(var n in this.container_list)this.container_list[n].remove();this.container_list=[],this.canvas_list=[];for(var n=0;n<t;n++){var r=$(this._templateContainer(e,parseInt(100/t)));this.$el.append(r),this.container_list[n]=r,this.canvas_list[n]=r.find(".charts-viewport-canvas").attr("id")}},_draw:function(e){var t=this,n=this.app.deferred.register(),r=e.get("type");this.chart_definition=e.definition;var i=1;e.settings.get("use_panels")==="true"&&(i=e.groups.length),this._createContainer(this.chart_definition.tag,i),e.state("wait","Please wait...");if(!this.chart_definition.execute||this.chart_definition.execute&&e.get("modified"))this.app.jobs.cleanup(e),e.set("modified",!1);var t=this;require(["plugin/charts/"+this.app.chartPath(r)+"/wrapper"],function(r){if(t.chart_definition.execute)t.app.jobs.request(e,t._defaultSettingsString(e),t._defaultRequestString(e),function(){var i=new r(t.app,{process_id:n,chart:e,request_dictionary:t._defaultRequestDictionary(e),canvas_list:t.canvas_list})},function(){this.app.deferred.done(n)});else var i=new r(t.app,{process_id:n,chart:e,request_dictionary:t._defaultRequestDictionary(e),canvas_list:t.canvas_list})})},_defaultRequestString:function(e){var t="",n=0,r=this;return e.groups.each(function(e){n++;for(var i in r.chart_definition.columns)t+=i+"_"+n+":"+(parseInt(e.get(i))+1)+", "}),t.substring(0,t.length-2)},_defaultSettingsString:function(e){var t="";for(key in e.settings.attributes)t+=key+":"+e.settings.get(key)+", ";return t.substring(0,t.length-2)},_defaultRequestDictionary:function(e){var t={groups:[]};this.chart_definition.execute?t.id=e.get("dataset_id_job"):t.id=e.get("dataset_id");var r=0,i=this;return e.groups.each(function(e){var s={};for(var o in i.chart_definition.columns){var u=i.chart_definition.columns[o];s[o]=n.merge({index:e.get(o)},u)}t.groups.push({key:++r+":"+e.get("key"),columns:s})}),t},_template:function(){return'<div class="charts-viewport"><div id="info" class="info"><span id="icon" class="icon"/><span id="text" class="text" /></div></div>'},_templateContainer:function(e,t){return'<div class="charts-viewport-container" style="width:'+t+'%;">'+'<div id="menu"/>'+"<"+e+' id="'+n.uuid()+'" class="charts-viewport-canvas">'+"</div>"}})}),define("plugin/library/screenshot",["libs/underscore"],function(e){function t(e){e.$el.find("svg").length>0?r(e):n(e)}function n(e){try{var t=e.$el.find(".jqplot-target"),n=t.jqplotToImageStr({});n&&(window.location.href=n.replace("image/png","image/octet-stream"))}catch(r){console.debug("FAILED - Screenshot::_fromCanvas() - "+r),e.error&&e.error("Please reduce your chart to a single panel and try again.")}}function r(e){var t=e.$el,n=e.url,r=e.name,s=new XMLSerializer,o=document.createElement("canvas"),u=$(o),a=t.find("svg").length,f=t.find("svg").first(),l=parseInt(f.css("height")),c=parseInt(f.css("width"));u.attr("width",c*a),u.attr("height",l),(!o.getContext||!o.getContext("2d"))&&alert("Your browser doesn't support this feature, please use a modern browser");var h=o.getContext("2d"),p=0;t.find("svg").each(function(){var e=$(this);e.attr({version:"1.1",xmlns:"http://www.w3.org/2000/svg",width:c,height:l});var t=s.serializeToString(this);h.drawSvg(t,p,0,c,l),p+=c}),window.location.href=i(o,o.getContext("2d"),"white").replace("image/png","image/octet-stream")}function i(e,t,n){var r=e.width,i=e.height,s;if(n){s=t.getImageData(0,0,r,i);var o=t.globalCompositeOperation;t.globalCompositeOperation="destination-over",t.fillStyle=n,t.fillRect(0,0,r,i)}var u=e.toDataURL("image/png");return n&&(t.clearRect(0,0,r,i),t.putImageData(s,0,0),t.globalCompositeOperation=o),u}function s(e){window.location.href="data:none/none;base64,"+btoa(a(e).string)}function o(e){for(var t in document.styleSheets){var n=document.styleSheets[t],r=n.cssRules;if(r)for(var i=0,s=r.length;i<s;i++)try{e.find(r[i].selectorText).each(function(e,t){t.style.cssText+=r[i].style.cssText})}catch(o){}}}function u(e){var t=a(e),n={filename:name||"chart",type:"application/pdf",height:t.height,width:t.width,scale:2,svg:t.string},r=$("body"),i=r.find("#viewport-form");i.length===0&&(i=$("<form>",{id:"viewport-form",method:"post",action:"http://export.highcharts.com/",display:"none"}),r.append(i)),i.empty();for(name in n){var s=$("<input/>",{type:"hidden",name:name,value:n[name]});i.append(s)}try{i.submit()}catch(o){console.log(o)}}function a(e){if(e.$el.find("svg").length==0&&e.error){e.error("No SVG found. This chart type does not support SVG/PDF export.");return}var t=e.$el,n=t.find("svg").length,r=parseInt(t.find("svg").first().css("height")),i=parseInt(t.find("svg").first().css("width")),s=new XMLSerializer,u=$("<svg/>");u.attr({version:"1.1",xmlns:"http://www.w3.org/2000/svg",width:i*n,height:r});var a="",f=0;return t.find("svg").each(function(){var e=$(this).clone();o(e);var t=$('<g transform="translate('+f+', 0)">');t.append(e.find("g").first()),u.append(t),f+=i}),{string:s.serializeToString(u[0]),height:r,width:i}}return{createPNG:t,createSVG:s,createPDF:u}}),define("plugin/views/viewer",["utils/utils","mvc/ui/ui-misc","mvc/ui/ui-portlet","plugin/views/viewport","plugin/library/screenshot"],function(e,t,n,r,i){return Backbone.View.extend({initialize:function(e,s){this.app=e,this.chart=this.app.chart,this.viewport_view=new r(e);var o=this;this.message=new t.Message;var u=new t.ButtonMenu({icon:"fa-camera",title:"Screenshot",tooltip:"Download as PNG, SVG or PDF file"});u.addMenu({id:"button-png",title:"Save as PNG",icon:"fa-file",onclick:function(){o._wait(o.chart,function(){i.createPNG({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}),u.addMenu({id:"button-svg",title:"Save as SVG",icon:"fa-file-text-o",onclick:function(){o._wait(o.chart,function(){i.createSVG({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}),u.addMenu({id:"button-png",title:"Save as PDF",icon:"fa-file-o",onclick:function(){o.app.modal.show({title:"Send chart data for PDF creation",body:"Galaxy does not provide integrated PDF export scripts. You may click 'Continue' to create the PDF by using a 3rd party service (https://export.highcharts.com)",buttons:{Cancel:function(){o.app.modal.hide()},Continue:function(){o.app.modal.hide(),o._wait(o.chart,function(){i.createPDF({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}})}}),this.portlet=new n.View({icon:"fa-bar-chart-o",title:"Viewport",operations:{edit_button:new t.ButtonIcon({icon:"fa-edit",tooltip:"Customize this chart",title:"Editor",onclick:function(){o._wait(o.chart,function(){o.app.go("editor")})}}),picture_button_menu:u}}),this.portlet.append(this.message.$el),this.portlet.append(this.viewport_view.$el),this.setElement(this.portlet.$el);var o=this;this.chart.on("change:title",function(){o._refreshTitle()})},show:function(){this.$el.show(),$(window).trigger("resize")},hide:function(){this.$el.hide()},_refreshTitle:function(){var e=this.chart.get("title");this.portlet.title(e)},_wait:function(e,t){this.app.deferred.ready()?t():this.message.update({message:"Your chart is currently being processed. Please wait and try again."})}})}),define("mvc/ui/ui-tabs",["utils/utils"],function(e){var t=Backbone.View.extend({optionsDefault:{title_new:"",operations:null,onnew:null,max:null,onchange:null},initialize:function(t){this.visible=!1,this.$nav=null,this.$content=null,this.first_tab=null,this.current_id=null,this.options=e.merge(t,this.optionsDefault);var n=$(this._template(this.options));this.$nav=n.find(".tab-navigation"),this.$content=n.find(".tab-content"),this.setElement(n),this.list={};var r=this;this.options.operations&&$.each(this.options.operations,function(e,t){t.$el.prop("id",e),r.$nav.find(".operations").append(t.$el)});if(this.options.onnew){var i=$(this._template_tab_new(this.options));this.$nav.append(i),i.tooltip({title:"Add a new tab",placement:"bottom",container:r.$el}),i.on("click",function(e){i.tooltip("hide"),r.options.onnew()})}},size:function(){return _.size(this.list)},current:function(){return this.$el.find(".tab-pane.active").attr("id")},add:function(e){var t=this,n=e.id,r=$(this._template_tab(e)),i=$(this._template_tab_content(e));this.list[n]=e.ondel?!0:!1,this.options.onnew?this.$nav.find("#new-tab").before(r):this.$nav.append(r),i.append(e.$el),this.$content.append(i),this.size()==1&&(r.addClass("active"),i.addClass("active"),this.first_tab=n),this.options.max&&this.size()>=this.options.max&&this.$el.find("#new-tab").hide();if(e.ondel){var s=r.find("#delete");s.tooltip({title:"Delete this tab",placement:"bottom",container:t.$el}),s.on("click",function(){return s.tooltip("destroy"),t.$el.find(".tooltip").remove(),e.ondel(),!1})}r.on("click",function(r){r.preventDefault(),e.onclick?e.onclick():t.show(n)}),this.current_id||(this.current_id=n)},del:function(e){this.$el.find("#tab-"+e).remove(),this.$el.find("#"+e).remove(),this.first_tab==e&&(this.first_tab=null),this.first_tab!=null&&this.show(this.first_tab),this.list[e]&&delete this.list[e],this.size()<this.options.max&&this.$el.find("#new-tab").show()},delRemovable:function(){for(var e in this.list)this.del(e)},show:function(e){this.$el.fadeIn("fast"),this.visible=!0,e&&(this.$el.find("#tab-"+this.current_id).removeClass("active"),this.$el.find("#"+this.current_id).removeClass("active"),this.$el.find("#tab-"+e).addClass("active"),this.$el.find("#"+e).addClass("active"),this.current_id=e),this.options.onchange&&this.options.onchange(e)},hide:function(){this.$el.fadeOut("fast"),this.visible=!1},hideOperation:function(e){this.$nav.find("#"+e).hide()},showOperation:function(e){this.$nav.find("#"+e).show()},setOperation:function(e,t){var n=this.$nav.find("#"+e);n.off("click"),n.on("click",t)},title:function(e,t){var n=this.$el.find("#tab-title-text-"+e);return t&&n.html(t),n.html()},retitle:function(e){var t=0;for(var n in this.list)this.title(n,++t+": "+e)},_template:function(e){return'<div class="ui-tabs tabbable tabs-left"><ul id="tab-navigation" class="tab-navigation nav nav-tabs"><div class="operations" style="float: right; margin-bottom: 4px;"></div></ul><div id="tab-content" class="tab-content"/></div>'},_template_tab_new:function(e){return'<li id="new-tab"><a href="javascript:void(0);"><i class="ui-tabs-add fa fa-plus-circle"/>'+e.title_new+"</a>"+"</li>"},_template_tab:function(e){var t='<li id="tab-'+e.id+'" class="tab-element">'+'<a id="tab-title-link-'+e.id+'" title="" href="#'+e.id+'" data-original-title="">'+'<span id="tab-title-text-'+e.id+'" class="tab-title-text">'+e.title+"</span>";return e.ondel&&(t+='<i id="delete" class="ui-tabs-delete fa fa-minus-circle"/>'),t+="</a></li>",t},_template_tab_content:function(e){return'<div id="'+e.id+'" class="tab-pane"/>'}});return{View:t}}),define("mvc/ui/ui-table",["utils/utils"],function(e){var t=Backbone.View.extend({row:null,row_count:0,optionsDefault:{content:"No content available.",onchange:null,ondblclick:null,onconfirm:null,cls:"ui-table",cls_tr:""},events:{click:"_onclick",dblclick:"_ondblclick"},initialize:function(t){this.options=e.merge(t,this.optionsDefault);var n=$(this._template(this.options));this.$thead=n.find("thead"),this.$tbody=n.find("tbody"),this.$tmessage=n.find("tmessage"),this.setElement(n),this.row=this._row()},addHeader:function(e){var t=$("<th></th>");t.append(e),this.row.append(t)},appendHeader:function(){this.$thead.append(this.row),this.row=$("<tr></tr>")},add:function(e,t,n){var r=$("<td></td>");t&&r.css("width",t),n&&r.css("text-align",n),r.append(e),this.row.append(r)},append:function(e,t){this._commit(e,t,!1)},prepend:function(e,t){this._commit(e,t,!0)},get:function(e){return this.$el.find("#"+e)},del:function(e){var t=this.$tbody.find("#"+e);t.length>0&&(t.remove(),this.row_count--,this._refresh())},delAll:function(){this.$tbody.empty(),this.row_count=0,this._refresh()},value:function(e){this.before=this.$tbody.find(".current").attr("id"),e!==undefined&&(this.$tbody.find("tr").removeClass("current"),e&&this.$tbody.find("#"+e).addClass("current"));var t=this.$tbody.find(".current").attr("id");return t===undefined?null:(t!=this.before&&this.options.onchange&&this.options.onchange(e),t)},size:function(){return this.$tbody.find("tr").length},_commit:function(e,t,n){this.del(e),this.row.attr("id",e),n?this.$tbody.prepend(this.row):this.$tbody.append(this.row),t&&(this.row.hide(),this.row.fadeIn()),this.row=this._row(),this.row_count++,this._refresh()},_row:function(){return $('<tr class="'+this.options.cls_tr+'"></tr>')},_onclick:function(e){var t=this.value(),n=$(e.target).closest("tr").attr("id");n!=""&&n&&t!=n&&(this.options.onconfirm?this.options.onconfirm(n):this.value(n))},_ondblclick:function(e){var t=this.value();t&&this.options.ondblclick&&this.options.ondblclick(t)},_refresh:function(){this.row_count==0?this.$tmessage.show():this.$tmessage.hide()},_template:function(e){return'<div><table class="'+e.cls+'">'+"<thead></thead>"+"<tbody></tbody>"+"</table>"+"<tmessage>"+e.content+"</tmessage>"+"<div>"}});return{View:t}}),define("plugin/views/group",["mvc/ui/ui-table","mvc/ui/ui-misc","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(n,r){this.app=n;var i=this;this.chart=this.app.chart,this.group=r.group,this.group_key=new t.Input({placeholder:"Data label",onchange:function(e){i.group.set("key",e)}}),this.table=new e.View({content:"No data column."});var s=$("<div/>");s.append((new t.Label({title:"Provide a label:"})).$el),s.append(this.group_key.$el.addClass("ui-margin-bottom")),s.append((new t.Label({title:"Select columns:"})).$el.addClass("ui-margin-top")),s.append(this.table.$el.addClass("ui-margin-bottom")),this.setElement(s);var i=this;this.chart.on("change:dataset_id",function(){i._refreshTable()}),this.chart.on("change:type",function(){i._refreshTable()}),this.group.on("change:key",function(){i._refreshGroupKey()}),this.group.on("change",function(){i._refreshGroup()}),this._refreshTable(),this._refreshGroupKey(),this._refreshGroup()},_refreshTable:function(){var e=this.chart.get("dataset_id"),n=this.chart.get("type");if(!e||!n)return;var r=this,i=this.chart.definition;this.table.delAll();var s={};for(var o in i.columns){var u=i.columns[o];if(!u){console.debug("Group::_refreshTable() - Skipping column definition.");continue}var a=new t.Select.View({id:"select_"+o,wait:!0}),f=u.title;u.is_unique&&(f+=" (all data labels)"),this.table.add(f,"25%"),this.table.add(a.$el),this.table.append(o),s[o]=a}this.chart.state("wait","Loading metadata...");var l=this.app.deferred.register(),c={id:e,success:function(e){for(var t in s)r._addRow(t,e,s,i.columns[t]);r.chart.state("ok","Metadata initialized..."),r.app.deferred.done(l)}};this.app.datasets.request(c)},_addRow:function(e,t,n,r){var i=this,s=r.is_label,o=r.is_auto,u=r.is_numeric,a=r.is_unique,f=r.is_zero,l=[],c=n[e];o&&l.push({label:"Column: Row Number",value:"auto"}),f&&l.push({label:"Column: None",value:"zero"});var h=t.metadata_column_types;for(var p in h){var d=!1;h[p]=="int"||h[p]=="float"?d=u:d=s,d&&l.push({label:"Column: "+(parseInt(p)+1)+" ["+h[p]+"]",value:p})}c.update(l),a&&this.chart.groups.first()&&this.group.set(e,this.chart.groups.first().get(e));if(!c.exists(this.group.get(e))){var v=c.first();console.debug('Group()::_addRow() - Switching model value from "'+this.group.get(e)+'" to "'+v+'".'),this.group.set(e,v)}c.value(this.group.get(e)),this.group.off("change:"+e),this.group.on("change:"+e,function(){c.value(i.group.get(e))}),c.setOnChange(function(t){a?i.chart.groups.each(function(n){n.set(e,t)}):i.group.set(e,t),i.chart.set("modified",!0)}),c.show()},_refreshGroup:function(){this.group.set("date",n.time())},_refreshGroupKey:function(){var e=this.group.get("key");e===undefined&&(e=""),e!=this.group_key.value()&&this.group_key.value(e)}})}),define("plugin/library/ui-table-form",["mvc/ui/ui-table","mvc/ui/ui-misc","utils/utils"],function(e,t,n){var r=Backbone.View.extend({optionsDefault:{title:"",content:"",mode:""},list:[],initialize:function(r,i){this.app=r,this.options=n.merge(i,this.optionsDefault),this.table_title=new t.Label({title:this.options.title}),this.table=new e.View({content:this.options.content});var s=$('<div class="ui-table-form"/>');this.options.title&&s.append(this.table_title.$el),s.append(this.table.$el),this.setElement(s)},title:function(e){this.table_title.title(e)},update:function(e,t){this.table.delAll(),this.list=[];for(var n in e)this._add(e[n].id||n,e[n],t);for(var n in this.list)this.list[n].trigger("change")},_add:function(e,n,r){var i=this,s=null,o=n.type;switch(o){case"text":s=new t.Input({id:"field-"+e,placeholder:n.placeholder,value:r.get(e),onchange:function(t){r.set(e,t)}});break;case"radiobutton":s=new t.RadioButton.View({id:"field-"+e,data:n.data,value:r.get(e),onchange:function(t){r.set(e,t);var s=_.findWhere(n.data,{value:t});if(s&&s.operations){var o=s.operations;for(var u in o.show){var a=o.show[u];i.table.get(a).show()}for(var u in o.hide){var a=o.hide[u];i.table.get(a).hide()}}}});break;case"select":s=new t.Select.View({id:"field-"+e,data:n.data,value:r.get(e),onchange:function(t){r.set(e,t);var s=_.findWhere(n.data,{value:t});if(s&&s.operations){var o=s.operations;for(var u in o.show){var a=o.show[u];i.table.get(a).show()}for(var u in o.hide){var a=o.hide[u];i.table.get(a).hide()}}}});break;case"dataset":s=new t.Select.View({id:"field-"+e,onchange:function(t){r.set(e,t)}}),i.app.datasets.on("all",function(){var t=[];i.app.datasets.each(function(e){e.get("datatype_id")==n.data&&t.push({value:e.get("id"),label:e.get("name")})}),s.update(t),r.get(e)||r.set(e,s.first()),s.value(r.get(e))}),i.app.datasets.trigger("all.datasets");break;case"textarea":s=new t.Textarea({id:"field-"+e,onchange:function(){r.set(e,s.value())}});break;case"separator":s=$("<div/>");break;default:s=new t.Input({id:"field-"+e,placeholder:n.placeholder,type:n.type,onchange:function(){r.set(e,s.value())}})}if(o!="separator"){r.get(e)||r.set(e,n.init),s.value(r.get(e)),this.list[e]=s;var u=$("<div/>");u.append(s.$el),n.info&&u.append('<div class="ui-table-form-info">'+n.info+"</div>"),this.options.style=="bold"?(this.table.add((new t.Label({title:n.title,cls:"form-label"})).$el),this.table.add(u)):(this.table.add('<span class="ui-table-form-title">'+n.title+"</span>","25%"),this.table.add(u))}else this.table.add('<div class="ui-table-form-separator">'+n.title+":<div/>"),this.table.add($("<div/>"));this.table.append(e),n.hide&&this.table.get(e).hide()}});return{View:r}}),define("plugin/views/settings",["mvc/ui/ui-misc","plugin/library/ui-table-form","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(e,n){this.app=e;var r=this;this.chart=this.app.chart,this.form=new t.View(e,{title:"Configuration",content:"This chart type does not provide any options."}),this.setElement(this.form.$el);var r=this;this.chart.on("change",function(){r._refresh()})},_refresh:function(){var e=this.chart.definition;if(!e)return;this.form.title(e.category+" - "+e.title+":"),this.form.update(e.settings,this.chart.settings)}})}),define("plugin/views/types",["utils/utils","mvc/ui/ui-misc"],function(e,t){return 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o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),f=i.pos[0]+(s.offsetLeft||0),l=p.range()[0]+a.top+(s.offsetTop||0),c=h.range()[0]+a.left+(s.offsetLeft||0),d=i.pos[1]+(s.offsetTop||0),v=n.tickFormat()(t.x()(i.point,i.pointIndex)),m=r.tickFormat()(t.y()(i.point,i.pointIndex));T!=null&&e.tooltip.show([f,l],T(i.series.key,v,m,i,B),"n",1,s,"x-nvtooltip"),N!=null&&e.tooltip.show([c,d],N(i.series.key,v,m,i,B),"e",1,s,"y-nvtooltip"),C!=null&&e.tooltip.show([o,u],C(i.series.key,v,m,i.point.tooltip,i,B),i.value<0?"n":"s",null,s)},H=[{key:"Magnify",disabled:!0}];return t.dispatch.on("elementMouseout.tooltip",function(e){A.tooltipHide(e),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-distx-"+e.pointIndex).attr("y1",0),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" 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v.size(2.2).sizeDomain([2.2,2.2]),v.dispatch.on("elementClick.area",function(e){m.areaClick(e)}),v.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],m.tooltipShow(e)}),v.dispatch.on("elementMouseout.tooltip",function(e){m.tooltipHide(e)}),g.dispatch=m,g.scatter=v,d3.rebind(g,v,"interactive","size","xScale","yScale","zScale","xDomain","yDomain","xRange","yRange","sizeDomain","forceX","forceY","forceSize","clipVoronoi","useVoronoi","clipRadius","highlightPoint","clearHighlights"),g.options=e.utils.optionsFunc.bind(g),g.x=function(e){return arguments.length?(o=d3.functor(e),g):o},g.y=function(e){return arguments.length?(u=d3.functor(e),g):u},g.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,g):t},g.width=function(e){return 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U=I.select(".nv-stackedWrap").datum(y);U.call(t),p&&(n.scale(b).ticks(D/100).tickSize(-P,0),I.select(".nv-x.nv-axis").attr("transform","translate(0,"+P+")"),I.select(".nv-x.nv-axis").call(n)),d&&(r.scale(w).ticks(t.offset()=="wiggle"?0:P/36).tickSize(-D,0).setTickFormat(t.style()=="expand"||t.style()=="stack_percent"?d3.format("%"):E),I.select(".nv-y.nv-axis").call(r)),t.dispatch.on("areaClick.toggle",function(e){y.filter(function(e){return!e.disabled}).length===1?y.forEach(function(e){e.disabled=!1}):y.forEach(function(t,n){t.disabled=n!=e.seriesIndex}),S.disabled=y.map(function(e){return!!e.disabled}),N.stateChange(S),M.update()}),i.dispatch.on("stateChange",function(e){S.disabled=e.disabled,N.stateChange(S),M.update()}),s.dispatch.on("legendClick",function(e,n){if(!e.disabled)return;R=R.map(function(e){return e.disabled=!0,e}),e.disabled=!1,t.style(e.style),S.style=t.style(),N.stateChange(S),M.update()}),o.dispatch.on("elementMousemove",function(i){t.clearHighlights();var s,a,f,c=[];y.filter(function(e,t){return e.seriesIndex=t,!e.disabled}).forEach(function(n,r){a=e.interactiveBisect(n.values,i.pointXValue,M.x()),t.highlightPoint(r,a,!0);var o=n.values[a];if(typeof o=="undefined")return;typeof s=="undefined"&&(s=o),typeof f=="undefined"&&(f=M.xScale()(M.x()(o,a)));var u=t.style()=="expand"?o.display.y:M.y()(o,a);c.push({key:n.key,value:u,color:l(n,n.seriesIndex),stackedValue:o.display})}),c.reverse();if(c.length>2){var h=M.yScale().invert(i.mouseY),p=Infinity,d=null;c.forEach(function(e,t){h=Math.abs(h);var n=Math.abs(e.stackedValue.y0),r=Math.abs(e.stackedValue.y);if(h>=n&&h<=r+n){d=t;return}}),d!=null&&(c[d].highlight=!0)}var v=n.tickFormat()(M.x()(s,a)),m=t.style()=="expand"?function(e,t){return d3.format(".1%")(e)}:function(e,t){return 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t.dispatch.on("tooltipShow",function(e){e.pos=[e.pos[0]+u.left,e.pos[1]+u.top],N.tooltipShow(e)}),t.dispatch.on("tooltipHide",function(e){N.tooltipHide(e)}),N.on("tooltipHide",function(){g&&e.tooltip.cleanup()}),M.dispatch=N,M.stacked=t,M.legend=i,M.controls=s,M.xAxis=n,M.yAxis=r,M.interactiveLayer=o,d3.rebind(M,t,"x","y","size","xScale","yScale","xDomain","yDomain","xRange","yRange","sizeDomain","interactive","useVoronoi","offset","order","style","clipEdge","forceX","forceY","forceSize","interpolate"),M.options=e.utils.optionsFunc.bind(M),M.margin=function(e){return arguments.length?(u.top=typeof e.top!="undefined"?e.top:u.top,u.right=typeof e.right!="undefined"?e.right:u.right,u.bottom=typeof e.bottom!="undefined"?e.bottom:u.bottom,u.left=typeof e.left!="undefined"?e.left:u.left,M):u},M.width=function(e){return arguments.length?(a=e,M):a},M.height=function(e){return arguments.length?(f=e,M):f},M.color=function(n){return arguments.length?(l=e.utils.getColor(n),i.color(l),t.color(l),M):l},M.showControls=function(e){return arguments.length?(c=e,M):c},M.showLegend=function(e){return arguments.length?(h=e,M):h},M.showXAxis=function(e){return arguments.length?(p=e,M):p},M.showYAxis=function(e){return arguments.length?(d=e,M):d},M.rightAlignYAxis=function(e){return arguments.length?(v=e,r.orient(e?"right":"left"),M):v},M.useInteractiveGuideline=function(e){return arguments.length?(m=e,e===!0&&(M.interactive(!1),M.useVoronoi(!1)),M):m},M.tooltip=function(e){return arguments.length?(y=e,M):y},M.tooltips=function(e){return arguments.length?(g=e,M):g},M.tooltipContent=function(e){return arguments.length?(y=e,M):y},M.state=function(e){return arguments.length?(S=e,M):S},M.defaultState=function(e){return arguments.length?(x=e,M):x},M.noData=function(e){return arguments.length?(T=e,M):T},M.transitionDuration=function(e){return arguments.length?(A=e,M):A},M.controlsData=function(e){return 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y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/pie/config",["plugin/plugins/nvd3/nv.d3"],function(){return $.extend(!0,{},{title:"Pie chart",category:"Area charts",library:"NVD3",tag:"svg",keywords:"small",columns:{label:{title:"Labels",is_label:!0,is_auto:!0},y:{title:"Values",is_numeric:!0}},settings:{main_separator:{type:"separator",title:"Pie chart settings"},donut_ratio:{title:"Donut ratio",info:"Determine how large the donut hole will be.",type:"select",init:"0.5",data:[{label:"50%",value:"0.5"},{label:"25%",value:"0.25"},{label:"10%",value:"0.10"},{label:"0%",value:"0"}]},show_legend:{title:"Show legend",info:"Would you like to add a legend?",type:"radiobutton",init:"false",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]},label_separator:{type:"separator",title:"Label settings"},label_type:{title:"Donut label",info:"What would you like to show for each slice?",type:"select",init:"percent",data:[{label:"-- Nothing 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plot",category:"Others",zoomable:!0,columns:{x:{title:"Values for x-axis",is_numeric:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/nvd3/stackedarea/config",["plugin/charts/nvd3/common/config"],function(e){return $.extend(!0,{},e,{title:"Regular",zoomable:!0,category:"Area charts",keywords:"default small",columns:{x:{title:"Values for x-axis",is_label:!0,is_auto:!0,is_unique:!0},y:{title:"Values for y-axis",is_numeric:!0}}})}),define("plugin/charts/jqplot/common/config",["plugin/charts/forms/default"],function(e){return $.extend(!0,{},e,{title:"",category:"",library:"jqPlot",tag:"div",zoomable:!0,keywords:"medium",settings:{separator_grid:{title:"Grids",type:"separator"},x_axis_grid:{title:"Axis grid",info:"Would you like to show grid lines for the X axis?",type:"radiobutton",init:"false",data:[{label:"On",value:"true"},{label:"Off",value:"false"}]},y_axis_grid:{title:"Axis grid",info:"Would you like to show grid lines for the Y 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y-axis",is_numeric:!0}},settings:{x_axis_grid:{init:"true"}}})}),define("plugin/charts/jqplot/boxplot/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Box plot",category:"Data processing (requires 'charts' tool from Toolshed)",library:"jqPlot",tag:"div",execute:"boxplot",keywords:"small medium large",columns:{y:{title:"Observations",is_numeric:!0}},settings:{show_legend:{init:"false"}}})}),define("plugin/charts/jqplot/histogram_discrete/config",["plugin/charts/jqplot/common/config"],function(e){return $.extend(!0,{},e,{title:"Discrete Histogram",category:"Data processing (requires 'charts' tool from Toolshed)",execute:"histogramdiscrete",keywords:"small medium large",columns:{x:{title:"Observations",is_label:!0}},settings:{x_axis_label:{init:"Breaks"},y_axis_label:{init:"Density"}}})}),define("plugin/charts/others/heatmap/config",["plugin/charts/forms/default"],function(e){return $.extend(!0,{},e,{title:"Heatmap",category:"Others",library:"Custom",tag:"svg",keywords:"small",zoomable:!0,columns:{x:{title:"Column labels",is_label:!0,is_numeric:!0,is_unique:!0},y:{title:"Row labels",is_label:!0,is_numeric:!0,is_unique:!0},z:{title:"Observation",is_numeric:!0}},settings:{use_panels:{init:"true",hide:!0},color_set:{title:"Color scheme",info:"Select a color scheme for your heatmap",type:"select",init:"jet",data:[{label:"Cold-to-Hot",value:"hot"},{label:"Cool",value:"cool"},{label:"Copper",value:"copper"},{label:"Gray scale",value:"gray"},{label:"Jet",value:"jet"},{label:"No-Green",value:"no_green"},{label:"Ocean",value:"ocean"},{label:"Polar",value:"polar"},{label:"Red-to-Green",value:"redgreen"},{label:"Red-to-green (saturated)",value:"red2green"},{label:"Relief",value:"relief"},{label:"Seismograph",value:"seis"},{label:"Sealand",value:"sealand"},{label:"Split",value:"split"},{label:"Wysiwyg",value:"wysiwyg"}]},url_template:{title:"Url template",info:"Enter a url to link the labels with external sources. Use __LABEL__ as placeholder.",type:"text",init:"",placeholder:"http://someurl.com?id=__LABEL__"}}})}),define("plugin/charts/others/heatmap_cluster/config",["plugin/charts/others/heatmap/config"],function(e){return $.extend(!0,{},e,{title:"Clustered Heatmap",category:"Data processing (requires 'charts' tool from Toolshed)",execute:"heatmap",keywords:"small medium large"})}),define("plugin/charts/types",["plugin/charts/nvd3/bar/config","plugin/charts/nvd3/bar_stacked/config","plugin/charts/nvd3/bar_horizontal/config","plugin/charts/nvd3/bar_horizontal_stacked/config","plugin/charts/nvd3/line_focus/config","plugin/charts/nvd3/pie/config","plugin/charts/nvd3/stackedarea_full/config","plugin/charts/nvd3/stackedarea_stream/config","plugin/charts/nvd3/histogram/config","plugin/charts/nvd3/line/config","plugin/charts/nvd3/scatter/config","plugin/charts/nvd3/stackedarea/config","plugin/charts/jqplot/bar/config","plugin/charts/jqplot/line/config","plugin/charts/jqplot/scatter/config","plugin/charts/jqplot/boxplot/config","plugin/charts/jqplot/histogram_discrete/config","plugin/charts/others/heatmap/config","plugin/charts/others/heatmap_cluster/config"],function(e,t,n,r,i,s,o,u,a,f,l,c,h,p,d,v,m,g,y){return Backbone.Model.extend({defaults:{nvd3_bar:e,nvd3_bar_stacked:t,nvd3_bar_horizontal:n,nvd3_bar_horizontal_stacked:r,nvd3_line_focus:i,nvd3_stackedarea:c,nvd3_stackedarea_full:o,nvd3_stackedarea_stream:u,nvd3_pie:s,nvd3_line:f,nvd3_scatter:l,nvd3_histogram:a,jqplot_bar:h,jqplot_histogram_discrete:m,jqplot_line:p,jqplot_scatter:d,jqplot_boxplot:v,others_heatmap:g,others_heatmap_cluster:y}})}),define("plugin/app",["mvc/ui/ui-modal","mvc/ui/ui-portlet","mvc/ui/ui-misc","utils/utils","plugin/library/jobs","plugin/library/datasets","plugin/library/storage","utils/deferred","plugin/views/viewer","plugin/views/editor","plugin/models/config","plugin/models/chart","plugin/charts/types"],function(e,t,n,r,i,s,o,u,a,f,l,c,h){return Backbone.View.extend({initialize:function(t){this.options=t,Galaxy&&Galaxy.modal?this.modal=Galaxy.modal:this.modal=new e.View,this.config=new l,this.types=new h,this.chart=new c,this.jobs=new i(this),this.datasets=new s(this),this.storage=new o(this),this.deferred=new u,this.viewer_view=new a(this),this.editor_view=new f(this),this.$el.append(this.viewer_view.$el),this.$el.append(this.editor_view.$el);if(!this.storage.load())this.go("editor");else{this.go("viewer");var n=this;this.deferred.execute(function(){n.chart.trigger("redraw")})}},go:function(e){$(".tooltip").hide();switch(e){case"editor":this.editor_view.show(),this.viewer_view.hide();break;case"viewer":this.editor_view.hide(),this.viewer_view.show()}},chartPath:function(e){var t=e.split(/_(.+)/);return t.length>=2?t[0]+"/"+t[1]:(console.debug("FAILED App:chartPath() - Invalid format: "+e),undefined)}})});
\ No newline at end of file
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b config/plugins/visualizations/charts/static/library/ui-table-form.js
--- a/config/plugins/visualizations/charts/static/library/ui-table-form.js
+++ b/config/plugins/visualizations/charts/static/library/ui-table-form.js
@@ -32,9 +32,9 @@
// create element
var $view = $('<div class="ui-table-form"/>');
if (this.options.title) {
- $view.append(Utils.wrap(this.table_title.$el));
+ $view.append(this.table_title.$el);
}
- $view.append(Utils.wrap(this.table.$el));
+ $view.append(this.table.$el);
// add element
this.setElement($view);
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b config/plugins/visualizations/charts/static/views/editor.js
--- a/config/plugins/visualizations/charts/static/views/editor.js
+++ b/config/plugins/visualizations/charts/static/views/editor.js
@@ -107,11 +107,10 @@
// append element
var $main = $('<div/>');
- $main.append(Utils.wrap((new Ui.Label({ title : 'Provide a chart title:'})).$el));
+ $main.append((new Ui.Label({ title : 'Provide a chart title:'}).$el));
$main.append(this.title.$el);
$main.append($('<div/>').addClass('ui-table-form-info').html('This title will appear in the list of \'Saved Visualizations\'. Charts are saved upon creation.'));
- $main.append(Utils.wrap());
- $main.append(Utils.wrap(this.types.$el));
+ $main.append(this.types.$el.addClass('ui-margin-top'));
// add tab
this.tabs.add({
@@ -135,8 +134,8 @@
});
// append tabs
- this.portlet.append(this.message.$el);
- this.portlet.append(this.tabs.$el);
+ this.portlet.append(this.message.$el.addClass('ui-margin-top'));
+ this.portlet.append(this.tabs.$el.addClass('ui-margin-top'));
// elements
this.setElement(this.portlet.$el);
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b config/plugins/visualizations/charts/static/views/group.js
--- a/config/plugins/visualizations/charts/static/views/group.js
+++ b/config/plugins/visualizations/charts/static/views/group.js
@@ -31,10 +31,10 @@
// create element
var $view = $('<div/>');
- $view.append(Utils.wrap((new Ui.Label({title: 'Provide a label:'})).$el));
- $view.append(Utils.wrap(this.group_key.$el));
- $view.append(Utils.wrap((new Ui.Label({title: 'Select columns:'})).$el));
- $view.append(Utils.wrap(this.table.$el));
+ $view.append((new Ui.Label({title: 'Provide a label:'})).$el);
+ $view.append(this.group_key.$el.addClass('ui-margin-bottom'));
+ $view.append((new Ui.Label({title: 'Select columns:'})).$el.addClass('ui-margin-top'));
+ $view.append(this.table.$el.addClass('ui-margin-bottom'));
// add element
this.setElement($view);
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b config/plugins/visualizations/charts/static/views/types.js
--- a/config/plugins/visualizations/charts/static/views/types.js
+++ b/config/plugins/visualizations/charts/static/views/types.js
@@ -32,7 +32,7 @@
var $el = $('<div class="charts-grid"/>');
// add label
- $el.append(Utils.wrap((new Ui.Label({ title : 'How many data points would you like to analyze?'})).$el));
+ $el.append((new Ui.Label({ title : 'How many data points would you like to analyze?'})).$el);
// construct chart type subset selection buttons
this.library = new Ui.RadioButton.View({
@@ -43,7 +43,7 @@
self._filter(value);
}
});
- $el.append(Utils.wrap(this.library.$el));
+ $el.append(this.library.$el.addClass('ui-margin-bottom'));
// set element
this.setElement($el);
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b config/plugins/visualizations/charts/static/views/viewport.js
--- a/config/plugins/visualizations/charts/static/views/viewport.js
+++ b/config/plugins/visualizations/charts/static/views/viewport.js
@@ -28,7 +28,7 @@
this.setElement($(this._template()));
// use full screen for viewer
- this._fullscreen(this.$el, 90);
+ this._fullscreen(this.$el, 50);
// prevent window scrolling
var initial_overflow = $('body').css('overflow');
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b static/scripts/mvc/tools/tools-form-base.js
--- a/static/scripts/mvc/tools/tools-form-base.js
+++ b/static/scripts/mvc/tools/tools-form-base.js
@@ -306,7 +306,7 @@
});
// append message
- this.portlet.append(this.message.$el, true);
+ this.portlet.append(this.message.$el.addClass('ui-margin-top'));
// append tool section
this.portlet.append(this.section.$el);
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b static/scripts/mvc/tools/tools-repeat.js
--- a/static/scripts/mvc/tools/tools-repeat.js
+++ b/static/scripts/mvc/tools/tools-repeat.js
@@ -44,7 +44,7 @@
this.$el.append(this.table.$el);
// add button
- this.$el.append(Utils.wrap(this.button_new.$el));
+ this.$el.append($('<div/>').append(this.button_new.$el));
// clear list
this.list = {};
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b static/scripts/mvc/tools/tools-section.js
--- a/static/scripts/mvc/tools/tools-section.js
+++ b/static/scripts/mvc/tools/tools-section.js
@@ -139,7 +139,7 @@
});
// displays as grouped subsection
- sub_section.$el.addClass('ui-table-form-section');
+ sub_section.$el.addClass('ui-table-section');
// create table row
this.table.add(sub_section.$el);
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b static/scripts/mvc/tools/tools-select-content.js
--- a/static/scripts/mvc/tools/tools-select-content.js
+++ b/static/scripts/mvc/tools/tools-select-content.js
@@ -110,7 +110,7 @@
// add elements to dom
if (_.size(this.list) > 1) {
- this.$el.append(Utils.wrap(this.button_type.$el));
+ this.$el.append(this.button_type.$el.addClass('ui-margin-bottom'));
}
for (var i in this.list) {
this.$el.append(this.list[i].field.$el);
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b static/scripts/mvc/ui/ui-portlet.js
--- a/static/scripts/mvc/ui/ui-portlet.js
+++ b/static/scripts/mvc/ui/ui-portlet.js
@@ -84,12 +84,8 @@
},
// append
- append: function($el, unwrapped) {
- if (unwrapped) {
- this.$content.append($el);
- } else {
- this.$content.append(Utils.wrap($el));
- }
+ append: function($el) {
+ this.$content.append($el);
},
// content
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b static/scripts/packed/mvc/tools/tools-form-base.js
--- a/static/scripts/packed/mvc/tools/tools-form-base.js
+++ b/static/scripts/packed/mvc/tools/tools-form-base.js
@@ -1,1 +1,1 @@
-define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree"],function(g,h,f,k,i,a,d,c,e,j,b){return Backbone.View.extend({initialize:function(l){this.optionsDefault={is_dynamic:true,narrow:false,initial_errors:false,cls_portlet:"ui-portlet-limited"};this.options=g.merge(l,this.optionsDefault);console.debug(this.options);var m=parent.Galaxy;if(m&&m.modal){this.modal=m.modal}else{this.modal=new k.Modal.View()}if(m&&m.currUser){this.is_admin=m.currUser.get("is_admin")}else{this.is_admin=false}this.container=this.options.container||"body";this.deferred=new h();this.setElement("<div/>");$(this.container).append(this.$el);this.build(this.options)},build:function(m){var l=this;this.off("refresh");this.off("reset");this.field_list={};this.input_list={};this.element_list={};this.tree=new b(this);this.content=new e(this);l.options.inputs=m&&m.inputs;this._renderForm(m);this.tree.finalize();if(m.initial_errors){this._errors(m)}this.on("refresh",function(){l.deferred.reset();l.deferred.execute(function(){l._updateModel()})});this.on("reset",function(){for(var n in this.element_list){this.element_list[n].reset()}});this.trigger("refresh")},reciept:function(l){$(this.container).empty();$(this.container).append(l)},highlight:function(m,n,l){var o=this.element_list[m];if(o){o.error(n||"Please verify this parameter.");if(!l){$(this.container).animate({scrollTop:o.$el.offset().top-20},500)}}},_errors:function(n){this.trigger("reset");if(n&&n.errors){var o=this.tree.matchResponse(n.errors);for(var m in this.element_list){var l=this.element_list[m];if(o[m]){this.highlight(m,o[m],true)}}}},_renderForm:function(u){var t=this;this.message=new k.Message();var q=new k.ButtonIcon({icon:"fa-info-circle",title:(!u.narrow&&"Requirements")||null,tooltip:"Display tool requirements",onclick:function(){if(!this.visible){this.visible=true;t.message.update({persistent:true,message:c.requirements(u),status:"info"})}else{this.visible=false;t.message.update({message:""})}}});if(!u.requirements||u.requirements.length==0){q.$el.hide()}var m=new k.ButtonMenu({icon:"fa-cubes",title:(!u.narrow&&"Versions")||null,tooltip:"Select another tool version"});if(u.versions&&u.versions.length>1){for(var o in u.versions){var r=u.versions[o];if(r!=u.version){m.addMenu({title:"Switch to "+r,version:r,icon:"fa-cube",onclick:function(){t.options.id=t.options.id.replace(t.options.version,this.version);t.options.version=this.version;t.deferred.reset();t.deferred.execute(function(){t._buildModel()})}})}}}else{m.$el.hide()}var p=new k.ButtonMenu({icon:"fa-caret-down",title:(!u.narrow&&"Options")||null,tooltip:"View available options"});if(u.biostar_url){p.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(u.biostar_url+"/p/new/post/")}});p.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(u.biostar_url+"/t/"+u.id+"/")}})}p.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+u.id)}});if(this.is_admin){p.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+u.id+"/download"}})}this.section=new j.View(t,{inputs:u.inputs});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new f.View({icon:"fa-wrench",title:"<b>"+u.name+"</b> "+u.description+" (Galaxy Tool Version "+u.version+")",cls:this.options.cls_portlet,operations:{requirements:q,menu:p,versions:m},buttons:this.buttons});this.portlet.append(this.message.$el,true);this.portlet.append(this.section.$el);this.$el.empty();this.$el.append(this.portlet.$el);if(u.help!=""){this.$el.append(c.help(u.help))}if(u.citations){var s=$("<div/>");var l=new i.ToolCitationCollection();l.tool_id=u.id;var n=new a.CitationListView({el:s,collection:l});n.render();l.fetch();this.$el.append(s)}if(u.message){this.message.update({persistent:true,status:"warning",message:u.message})}}})});
\ No newline at end of file
+define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree"],function(g,h,f,k,i,a,d,c,e,j,b){return Backbone.View.extend({initialize:function(l){this.optionsDefault={is_dynamic:true,narrow:false,initial_errors:false,cls_portlet:"ui-portlet-limited"};this.options=g.merge(l,this.optionsDefault);console.debug(this.options);var m=parent.Galaxy;if(m&&m.modal){this.modal=m.modal}else{this.modal=new k.Modal.View()}if(m&&m.currUser){this.is_admin=m.currUser.get("is_admin")}else{this.is_admin=false}this.container=this.options.container||"body";this.deferred=new h();this.setElement("<div/>");$(this.container).append(this.$el);this.build(this.options)},build:function(m){var l=this;this.off("refresh");this.off("reset");this.field_list={};this.input_list={};this.element_list={};this.tree=new b(this);this.content=new e(this);l.options.inputs=m&&m.inputs;this._renderForm(m);this.tree.finalize();if(m.initial_errors){this._errors(m)}this.on("refresh",function(){l.deferred.reset();l.deferred.execute(function(){l._updateModel()})});this.on("reset",function(){for(var n in this.element_list){this.element_list[n].reset()}});this.trigger("refresh")},reciept:function(l){$(this.container).empty();$(this.container).append(l)},highlight:function(m,n,l){var o=this.element_list[m];if(o){o.error(n||"Please verify this parameter.");if(!l){$(this.container).animate({scrollTop:o.$el.offset().top-20},500)}}},_errors:function(n){this.trigger("reset");if(n&&n.errors){var o=this.tree.matchResponse(n.errors);for(var m in this.element_list){var l=this.element_list[m];if(o[m]){this.highlight(m,o[m],true)}}}},_renderForm:function(u){var t=this;this.message=new k.Message();var q=new k.ButtonIcon({icon:"fa-info-circle",title:(!u.narrow&&"Requirements")||null,tooltip:"Display tool requirements",onclick:function(){if(!this.visible){this.visible=true;t.message.update({persistent:true,message:c.requirements(u),status:"info"})}else{this.visible=false;t.message.update({message:""})}}});if(!u.requirements||u.requirements.length==0){q.$el.hide()}var m=new k.ButtonMenu({icon:"fa-cubes",title:(!u.narrow&&"Versions")||null,tooltip:"Select another tool version"});if(u.versions&&u.versions.length>1){for(var o in u.versions){var r=u.versions[o];if(r!=u.version){m.addMenu({title:"Switch to "+r,version:r,icon:"fa-cube",onclick:function(){t.options.id=t.options.id.replace(t.options.version,this.version);t.options.version=this.version;t.deferred.reset();t.deferred.execute(function(){t._buildModel()})}})}}}else{m.$el.hide()}var p=new k.ButtonMenu({icon:"fa-caret-down",title:(!u.narrow&&"Options")||null,tooltip:"View available options"});if(u.biostar_url){p.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(u.biostar_url+"/p/new/post/")}});p.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(u.biostar_url+"/t/"+u.id+"/")}})}p.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+u.id)}});if(this.is_admin){p.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+u.id+"/download"}})}this.section=new j.View(t,{inputs:u.inputs});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new f.View({icon:"fa-wrench",title:"<b>"+u.name+"</b> "+u.description+" (Galaxy Tool Version "+u.version+")",cls:this.options.cls_portlet,operations:{requirements:q,menu:p,versions:m},buttons:this.buttons});this.portlet.append(this.message.$el.addClass("ui-margin-top"));this.portlet.append(this.section.$el);this.$el.empty();this.$el.append(this.portlet.$el);if(u.help!=""){this.$el.append(c.help(u.help))}if(u.citations){var s=$("<div/>");var l=new i.ToolCitationCollection();l.tool_id=u.id;var n=new a.CitationListView({el:s,collection:l});n.render();l.fetch();this.$el.append(s)}if(u.message){this.message.update({persistent:true,status:"warning",message:u.message})}}})});
\ No newline at end of file
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b static/scripts/packed/mvc/tools/tools-repeat.js
--- a/static/scripts/packed/mvc/tools/tools-repeat.js
+++ b/static/scripts/packed/mvc/tools/tools-repeat.js
@@ -1,1 +1,1 @@
-define(["utils/utils","mvc/ui/ui-table","mvc/ui/ui-portlet","mvc/ui/ui-misc"],function(c,a,b,e){var d=Backbone.View.extend({optionsDefault:{max:null},initialize:function(g){this.options=c.merge(g,this.optionsDefault);this.setElement("<div/>");var f=this;this.button_new=new e.ButtonIcon({icon:"fa-plus",title:"Insert "+g.title_new,tooltip:"Add new "+g.title_new+" block",floating:"clear",onclick:function(){if(g.onnew){g.onnew()}}});this.table=new a.View({cls:"ui-table-plain",content:""});this.$el.append(this.table.$el);this.$el.append(c.wrap(this.button_new.$el));this.list={}},size:function(){return _.size(this.list)},add:function(g){var f=new e.ButtonIcon({icon:"fa-trash-o",tooltip:"Delete this repeat block",cls:"ui-button-icon-plain",onclick:function(){if(g.ondel){g.ondel()}}});var h=new b.View({id:g.id,title:"<b>"+g.title+"</b>",cls:"ui-portlet-repeat",operations:{button_delete:f}});if(!g.ondel){f.remove()}h.append(g.$el);h.$el.addClass("section-row");this.list[g.id]=h;this.table.add(h.$el);this.table.append("row_"+g.id,true);if(this.options.max>0&&this.size()>=this.options.max){this.button_new.disable()}},del:function(g){if(this.list[g]){var f=this.table.get("row_"+g);f.remove();delete this.list[g];this.button_new.enable()}},retitle:function(g){var f=0;for(var h in this.list){this.list[h].title(++f+": "+g)}}});return{View:d}});
\ No newline at end of file
+define(["utils/utils","mvc/ui/ui-table","mvc/ui/ui-portlet","mvc/ui/ui-misc"],function(c,a,b,e){var d=Backbone.View.extend({optionsDefault:{max:null},initialize:function(g){this.options=c.merge(g,this.optionsDefault);this.setElement("<div/>");var f=this;this.button_new=new e.ButtonIcon({icon:"fa-plus",title:"Insert "+g.title_new,tooltip:"Add new "+g.title_new+" block",floating:"clear",onclick:function(){if(g.onnew){g.onnew()}}});this.table=new a.View({cls:"ui-table-plain",content:""});this.$el.append(this.table.$el);this.$el.append($("<div/>").append(this.button_new.$el));this.list={}},size:function(){return _.size(this.list)},add:function(g){var f=new e.ButtonIcon({icon:"fa-trash-o",tooltip:"Delete this repeat block",cls:"ui-button-icon-plain",onclick:function(){if(g.ondel){g.ondel()}}});var h=new b.View({id:g.id,title:"<b>"+g.title+"</b>",cls:"ui-portlet-repeat",operations:{button_delete:f}});if(!g.ondel){f.remove()}h.append(g.$el);h.$el.addClass("section-row");this.list[g.id]=h;this.table.add(h.$el);this.table.append("row_"+g.id,true);if(this.options.max>0&&this.size()>=this.options.max){this.button_new.disable()}},del:function(g){if(this.list[g]){var f=this.table.get("row_"+g);f.remove();delete this.list[g];this.button_new.enable()}},retitle:function(g){var f=0;for(var h in this.list){this.list[h].title(++f+": "+g)}}});return{View:d}});
\ No newline at end of file
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b static/scripts/packed/mvc/tools/tools-section.js
--- a/static/scripts/packed/mvc/tools/tools-section.js
+++ b/static/scripts/packed/mvc/tools/tools-section.js
@@ -1,1 +1,1 @@
-define(["utils/utils","mvc/ui/ui-table","mvc/ui/ui-misc","mvc/ui/ui-portlet","mvc/tools/tools-repeat","mvc/tools/tools-select-content","mvc/tools/tools-input"],function(e,b,h,d,c,a,f){var g=Backbone.View.extend({initialize:function(j,i){this.app=j;this.inputs=i.inputs;i.cls="ui-table-plain";i.cls_tr="section-row";this.table=new b.View(i);this.setElement(this.table.$el);this.render()},render:function(){this.table.delAll();for(var j in this.inputs){this.add(this.inputs[j])}},add:function(k){var j=this;var i=jQuery.extend(true,{},k);i.id=k.id=e.uuid();this.app.input_list[i.id]=i;var l=i.type;switch(l){case"conditional":this._addConditional(i);break;case"repeat":this._addRepeat(i);break;case"section":this._addSection(i);break;default:this._addRow(i)}},_addConditional:function(j){var k=this;j.test_param.id=j.id;var n=this._addRow(j.test_param);n.options.onchange=function(w){var v=k.app.tree.matchCase(j,w);for(var u in j.cases){var q=j.cases[u];var t=j.id+"-section-"+u;var p=k.table.get(t);var s=false;for(var r in q.inputs){if(!q.inputs[r].hidden){s=true;break}}if(u==v&&s){p.fadeIn("fast")}else{p.hide()}}k.app.trigger("refresh")};for(var m in j.cases){var l=j.id+"-section-"+m;var o=new g(this.app,{inputs:j.cases[m].inputs});o.$el.addClass("ui-table-form-section");this.table.add(o.$el);this.table.append(l)}n.trigger("change")},_addRepeat:function(p){var s=this;var q=0;function n(i,u){var t=p.id+"-section-"+(q++);var v=null;if(u){v=function(){l.del(t);l.retitle(p.title);s.app.trigger("refresh")}}var w=new g(s.app,{inputs:i});l.add({id:t,title:p.title,$el:w.$el,ondel:v});l.retitle(p.title)}var l=new c.View({title_new:p.title,max:p.max,onnew:function(){n(p.inputs,true);s.app.trigger("refresh")}});var j=p.min;var r=_.size(p.cache);for(var m=0;m<Math.max(r,j);m++){var o=null;if(m<r){o=p.cache[m]}else{o=p.inputs}n(o,m>=j)}var k=new f(this.app,{label:p.title,help:p.help,field:l});this.table.add(k.$el);this.table.append(p.id)},_addSection:function(i){var j=this;var n=new g(j.app,{inputs:i.inputs});var m=new h.ButtonIcon({icon:"fa-eye-slash",tooltip:"Show/hide section",cls:"ui-button-icon-plain"});var l=new d.View({title:i.label,cls:"ui-portlet-section",operations:{button_visible:m}});l.append(n.$el);l.append($("<div/>").addClass("ui-table-form-info").html(i.help));var k=false;l.$content.hide();l.$header.css("cursor","pointer");l.$header.on("click",function(){if(k){k=false;l.$content.hide();m.setIcon("fa-eye-slash")}else{k=true;l.$content.fadeIn("fast");m.setIcon("fa-eye")}});if(i.expand){l.$header.trigger("click")}this.table.add(l.$el);this.table.append(i.id)},_addRow:function(i){var l=i.id;var j=this._createField(i);this.app.field_list[l]=j;if(i.default_value===undefined){i.default_value=i.value}var k=new f(this.app,{label:i.label,default_value:i.default_value,optional:i.optional,help:i.help,field:j});this.app.element_list[l]=k;this.table.add(k.$el);this.table.append(l);if(i.hidden){this.table.get(l).hide()}return j},_createField:function(i){var j=null;switch(i.type){case"text":j=this._fieldText(i);break;case"select":j=this._fieldSelect(i);break;case"data":j=this._fieldData(i);break;case"data_collection":j=this._fieldData(i);break;case"data_column":i.error_text="Missing columns in referenced dataset.";j=this._fieldSelect(i);break;case"hidden":j=this._fieldHidden(i);break;case"hidden_data":j=this._fieldHidden(i);break;case"integer":j=this._fieldSlider(i);break;case"float":j=this._fieldSlider(i);break;case"boolean":j=this._fieldBoolean(i);break;case"genomebuild":i.searchable=true;j=this._fieldSelect(i);break;case"drill_down":j=this._fieldDrilldown(i);break;case"baseurl":j=this._fieldHidden(i);break;default:this.app.incompatible=true;if(i.options){j=this._fieldSelect(i)}else{j=this._fieldText(i)}console.debug("tools-form::_addRow() : Auto matched field type ("+i.type+").")}if(i.value!==undefined){j.value(i.value)}return j},_fieldData:function(i){if(!this.app.options.is_dynamic){i.info="Data input '"+i.name+"' ("+e.textify(i.extensions.toString())+")";i.value=null;return this._fieldHidden(i)}var j=this;return new a.View(this.app,{id:"field-"+i.id,extensions:i.extensions,optional:i.optional,multiple:i.multiple,type:i.type,data:i.options,onchange:function(){j.app.trigger("refresh")}})},_fieldSelect:function(j){if(!this.app.options.is_dynamic&&j.is_dynamic){return this._fieldText(j)}var l=[];for(var m in j.options){var n=j.options[m];l.push({label:n[0],value:n[1]})}var o=h.Select;switch(j.display){case"checkboxes":o=h.Checkbox;break;case"radio":o=h.Radio;break}var k=this;return new o.View({id:"field-"+j.id,data:l,error_text:j.error_text||"No options available",multiple:j.multiple,searchable:j.searchable,onchange:function(){k.app.trigger("refresh")}})},_fieldDrilldown:function(i){if(!this.app.options.is_dynamic&&i.is_dynamic){return this._fieldText(i)}var j=this;return new h.Drilldown.View({id:"field-"+i.id,data:i.options,display:i.display,onchange:function(){j.app.trigger("refresh")}})},_fieldText:function(i){if(i.options){i.area=i.multiple;if(!e.validate(i.value)){i.value=""}else{if(i.value instanceof Array){i.value=value.toString()}else{i.value=String(i.value).replace(/[\[\]'"\s]/g,"");if(i.multiple){i.value=i.value.replace(/,/g,"\n")}}}}var j=this;return new h.Input({id:"field-"+i.id,area:i.area,onchange:function(){j.app.trigger("refresh")}})},_fieldSlider:function(i){var j=this;return new h.Slider.View({id:"field-"+i.id,precise:i.type=="float",min:i.min,max:i.max,onchange:function(){j.app.trigger("refresh")}})},_fieldHidden:function(i){return new h.Hidden({id:"field-"+i.id,info:i.info})},_fieldBoolean:function(i){var j=this;return new h.RadioButton.View({id:"field-"+i.id,data:[{label:"Yes",value:"true"},{label:"No",value:"false"}],onchange:function(){j.app.trigger("refresh")}})}});return{View:g}});
\ No newline at end of file
+define(["utils/utils","mvc/ui/ui-table","mvc/ui/ui-misc","mvc/ui/ui-portlet","mvc/tools/tools-repeat","mvc/tools/tools-select-content","mvc/tools/tools-input"],function(e,b,h,d,c,a,f){var g=Backbone.View.extend({initialize:function(j,i){this.app=j;this.inputs=i.inputs;i.cls="ui-table-plain";i.cls_tr="section-row";this.table=new b.View(i);this.setElement(this.table.$el);this.render()},render:function(){this.table.delAll();for(var j in this.inputs){this.add(this.inputs[j])}},add:function(k){var j=this;var i=jQuery.extend(true,{},k);i.id=k.id=e.uuid();this.app.input_list[i.id]=i;var l=i.type;switch(l){case"conditional":this._addConditional(i);break;case"repeat":this._addRepeat(i);break;case"section":this._addSection(i);break;default:this._addRow(i)}},_addConditional:function(j){var k=this;j.test_param.id=j.id;var n=this._addRow(j.test_param);n.options.onchange=function(w){var v=k.app.tree.matchCase(j,w);for(var u in j.cases){var q=j.cases[u];var t=j.id+"-section-"+u;var p=k.table.get(t);var s=false;for(var r in q.inputs){if(!q.inputs[r].hidden){s=true;break}}if(u==v&&s){p.fadeIn("fast")}else{p.hide()}}k.app.trigger("refresh")};for(var m in j.cases){var l=j.id+"-section-"+m;var o=new g(this.app,{inputs:j.cases[m].inputs});o.$el.addClass("ui-table-section");this.table.add(o.$el);this.table.append(l)}n.trigger("change")},_addRepeat:function(p){var s=this;var q=0;function n(i,u){var t=p.id+"-section-"+(q++);var v=null;if(u){v=function(){l.del(t);l.retitle(p.title);s.app.trigger("refresh")}}var w=new g(s.app,{inputs:i});l.add({id:t,title:p.title,$el:w.$el,ondel:v});l.retitle(p.title)}var l=new c.View({title_new:p.title,max:p.max,onnew:function(){n(p.inputs,true);s.app.trigger("refresh")}});var j=p.min;var r=_.size(p.cache);for(var m=0;m<Math.max(r,j);m++){var o=null;if(m<r){o=p.cache[m]}else{o=p.inputs}n(o,m>=j)}var k=new f(this.app,{label:p.title,help:p.help,field:l});this.table.add(k.$el);this.table.append(p.id)},_addSection:function(i){var j=this;var n=new g(j.app,{inputs:i.inputs});var m=new h.ButtonIcon({icon:"fa-eye-slash",tooltip:"Show/hide section",cls:"ui-button-icon-plain"});var l=new d.View({title:i.label,cls:"ui-portlet-section",operations:{button_visible:m}});l.append(n.$el);l.append($("<div/>").addClass("ui-table-form-info").html(i.help));var k=false;l.$content.hide();l.$header.css("cursor","pointer");l.$header.on("click",function(){if(k){k=false;l.$content.hide();m.setIcon("fa-eye-slash")}else{k=true;l.$content.fadeIn("fast");m.setIcon("fa-eye")}});if(i.expand){l.$header.trigger("click")}this.table.add(l.$el);this.table.append(i.id)},_addRow:function(i){var l=i.id;var j=this._createField(i);this.app.field_list[l]=j;if(i.default_value===undefined){i.default_value=i.value}var k=new f(this.app,{label:i.label,default_value:i.default_value,optional:i.optional,help:i.help,field:j});this.app.element_list[l]=k;this.table.add(k.$el);this.table.append(l);if(i.hidden){this.table.get(l).hide()}return j},_createField:function(i){var j=null;switch(i.type){case"text":j=this._fieldText(i);break;case"select":j=this._fieldSelect(i);break;case"data":j=this._fieldData(i);break;case"data_collection":j=this._fieldData(i);break;case"data_column":i.error_text="Missing columns in referenced dataset.";j=this._fieldSelect(i);break;case"hidden":j=this._fieldHidden(i);break;case"hidden_data":j=this._fieldHidden(i);break;case"integer":j=this._fieldSlider(i);break;case"float":j=this._fieldSlider(i);break;case"boolean":j=this._fieldBoolean(i);break;case"genomebuild":i.searchable=true;j=this._fieldSelect(i);break;case"drill_down":j=this._fieldDrilldown(i);break;case"baseurl":j=this._fieldHidden(i);break;default:this.app.incompatible=true;if(i.options){j=this._fieldSelect(i)}else{j=this._fieldText(i)}console.debug("tools-form::_addRow() : Auto matched field type ("+i.type+").")}if(i.value!==undefined){j.value(i.value)}return j},_fieldData:function(i){if(!this.app.options.is_dynamic){i.info="Data input '"+i.name+"' ("+e.textify(i.extensions.toString())+")";i.value=null;return this._fieldHidden(i)}var j=this;return new a.View(this.app,{id:"field-"+i.id,extensions:i.extensions,optional:i.optional,multiple:i.multiple,type:i.type,data:i.options,onchange:function(){j.app.trigger("refresh")}})},_fieldSelect:function(j){if(!this.app.options.is_dynamic&&j.is_dynamic){return this._fieldText(j)}var l=[];for(var m in j.options){var n=j.options[m];l.push({label:n[0],value:n[1]})}var o=h.Select;switch(j.display){case"checkboxes":o=h.Checkbox;break;case"radio":o=h.Radio;break}var k=this;return new o.View({id:"field-"+j.id,data:l,error_text:j.error_text||"No options available",multiple:j.multiple,searchable:j.searchable,onchange:function(){k.app.trigger("refresh")}})},_fieldDrilldown:function(i){if(!this.app.options.is_dynamic&&i.is_dynamic){return this._fieldText(i)}var j=this;return new h.Drilldown.View({id:"field-"+i.id,data:i.options,display:i.display,onchange:function(){j.app.trigger("refresh")}})},_fieldText:function(i){if(i.options){i.area=i.multiple;if(!e.validate(i.value)){i.value=""}else{if(i.value instanceof Array){i.value=value.toString()}else{i.value=String(i.value).replace(/[\[\]'"\s]/g,"");if(i.multiple){i.value=i.value.replace(/,/g,"\n")}}}}var j=this;return new h.Input({id:"field-"+i.id,area:i.area,onchange:function(){j.app.trigger("refresh")}})},_fieldSlider:function(i){var j=this;return new h.Slider.View({id:"field-"+i.id,precise:i.type=="float",min:i.min,max:i.max,onchange:function(){j.app.trigger("refresh")}})},_fieldHidden:function(i){return new h.Hidden({id:"field-"+i.id,info:i.info})},_fieldBoolean:function(i){var j=this;return new h.RadioButton.View({id:"field-"+i.id,data:[{label:"Yes",value:"true"},{label:"No",value:"false"}],onchange:function(){j.app.trigger("refresh")}})}});return{View:g}});
\ No newline at end of file
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b static/scripts/packed/mvc/tools/tools-select-content.js
--- a/static/scripts/packed/mvc/tools/tools-select-content.js
+++ b/static/scripts/packed/mvc/tools/tools-select-content.js
@@ -1,1 +1,1 @@
-define(["utils/utils","mvc/ui/ui-misc","mvc/ui/ui-tabs","mvc/tools/tools-template"],function(c,e,b,a){var d=Backbone.View.extend({initialize:function(l,g){this.app=l;this.options=g;var f=this;this.setElement("<div/>");this.list={};var j=[];if(g.type=="data_collection"){this.mode="collection"}else{if(g.multiple){this.mode="multiple"}else{this.mode="single"}}this.current=this.mode;this.list={};var k=c.textify(g.extensions);var n="No dataset available.";if(k){n="No "+k+" dataset available."}var m="No dataset list available.";if(k){m="No "+k+" dataset collection available."}if(this.mode=="single"){j.push({icon:"fa-file-o",label:"Single dataset",value:"single"});this.select_single=new e.Select.View({optional:g.optional,error_text:n,onchange:function(){f.trigger("change")}});this.list.single={field:this.select_single,type:"hda"}}if(this.mode=="single"||this.mode=="multiple"){j.push({icon:"fa-files-o",label:"Multiple datasets",value:"multiple"});this.select_multiple=new e.Select.View({multiple:true,error_text:n,onchange:function(){f.trigger("change")}});this.list.multiple={field:this.select_multiple,type:"hda"}}if(this.mode=="single"||this.mode=="collection"){j.push({icon:"fa-folder-o",label:"Dataset collection",value:"collection"});this.select_collection=new e.Select.View({error_text:m,optional:g.optional,onchange:function(){f.trigger("change")}});this.list.collection={field:this.select_collection,type:"hdca"}}this.button_type=new e.RadioButton.View({value:this.current,data:j,onchange:function(i){f.current=i;f.refresh();f.trigger("change")}});this.$batch=$(a.batchMode());if(_.size(this.list)>1){this.$el.append(c.wrap(this.button_type.$el))}for(var h in this.list){this.$el.append(this.list[h].field.$el)}this.$el.append(this.$batch);this.update(g.data);if(this.options.value!==undefined){this.value(this.options.value)}this.refresh();this.on("change",function(){if(g.onchange){g.onchange(f.value())}})},wait:function(){for(var f in this.list){this.list[f].field.wait()}},unwait:function(){for(var f in this.list){this.list[f].field.unwait()}},update:function(g){var l=[];for(var j in g.hda){var k=g.hda[j];l.push({label:k.hid+": "+k.name,value:k.id})}var f=[];for(var j in g.hdca){var h=g.hdca[j];f.push({label:h.hid+": "+h.name,value:h.id})}this.select_single&&this.select_single.update(l);this.select_multiple&&this.select_multiple.update(l);this.select_collection&&this.select_collection.update(f);this.app.content.add(g)},value:function(h){if(h!==undefined){if(h&&h.values){try{var l=[];for(var g in h.values){l.push(h.values[g].id)}if(h&&h.values.length>0&&h.values[0].src=="hcda"){this.current="collection";this.select_collection.value(l[0])}else{if(this.mode=="multiple"){this.current="multiple";this.select_multiple.value(l)}else{this.current="single";this.select_single.value(l[0])}}}catch(k){console.debug("tools-select-content::value() - Skipped.")}}else{this.select_single&&this.select_single.value("__null__");this.select_multiple&&this.select_multiple.value("__null__");this.select_collection&&this.select_collection.value("__null__")}this.refresh()}var j=this._select().value();if(!(j instanceof Array)){j=[j]}var f={batch:this.mode=="single"&&this.current!="single",values:[]};for(var g in j){f.values.push({id:j[g],src:this.list[this.current].type})}return f},validate:function(){return this._select().validate()},refresh:function(){this.button_type.value(this.current);for(var g in this.list){var f=this.list[g].field.$el;if(this.current==g){f.show()}else{f.hide()}}if(this.mode=="single"&&this.current!="single"){this.$batch.show()}else{this.$batch.hide()}},_select:function(){return this.list[this.current].field}});return{View:d}});
\ No newline at end of file
+define(["utils/utils","mvc/ui/ui-misc","mvc/ui/ui-tabs","mvc/tools/tools-template"],function(c,e,b,a){var d=Backbone.View.extend({initialize:function(l,g){this.app=l;this.options=g;var f=this;this.setElement("<div/>");this.list={};var j=[];if(g.type=="data_collection"){this.mode="collection"}else{if(g.multiple){this.mode="multiple"}else{this.mode="single"}}this.current=this.mode;this.list={};var k=c.textify(g.extensions);var n="No dataset available.";if(k){n="No "+k+" dataset available."}var m="No dataset list available.";if(k){m="No "+k+" dataset collection available."}if(this.mode=="single"){j.push({icon:"fa-file-o",label:"Single dataset",value:"single"});this.select_single=new e.Select.View({optional:g.optional,error_text:n,onchange:function(){f.trigger("change")}});this.list.single={field:this.select_single,type:"hda"}}if(this.mode=="single"||this.mode=="multiple"){j.push({icon:"fa-files-o",label:"Multiple datasets",value:"multiple"});this.select_multiple=new e.Select.View({multiple:true,error_text:n,onchange:function(){f.trigger("change")}});this.list.multiple={field:this.select_multiple,type:"hda"}}if(this.mode=="single"||this.mode=="collection"){j.push({icon:"fa-folder-o",label:"Dataset collection",value:"collection"});this.select_collection=new e.Select.View({error_text:m,optional:g.optional,onchange:function(){f.trigger("change")}});this.list.collection={field:this.select_collection,type:"hdca"}}this.button_type=new e.RadioButton.View({value:this.current,data:j,onchange:function(i){f.current=i;f.refresh();f.trigger("change")}});this.$batch=$(a.batchMode());if(_.size(this.list)>1){this.$el.append(this.button_type.$el.addClass("ui-margin-bottom"))}for(var h in this.list){this.$el.append(this.list[h].field.$el)}this.$el.append(this.$batch);this.update(g.data);if(this.options.value!==undefined){this.value(this.options.value)}this.refresh();this.on("change",function(){if(g.onchange){g.onchange(f.value())}})},wait:function(){for(var f in this.list){this.list[f].field.wait()}},unwait:function(){for(var f in this.list){this.list[f].field.unwait()}},update:function(g){var l=[];for(var j in g.hda){var k=g.hda[j];l.push({label:k.hid+": "+k.name,value:k.id})}var f=[];for(var j in g.hdca){var h=g.hdca[j];f.push({label:h.hid+": "+h.name,value:h.id})}this.select_single&&this.select_single.update(l);this.select_multiple&&this.select_multiple.update(l);this.select_collection&&this.select_collection.update(f);this.app.content.add(g)},value:function(h){if(h!==undefined){if(h&&h.values){try{var l=[];for(var g in h.values){l.push(h.values[g].id)}if(h&&h.values.length>0&&h.values[0].src=="hcda"){this.current="collection";this.select_collection.value(l[0])}else{if(this.mode=="multiple"){this.current="multiple";this.select_multiple.value(l)}else{this.current="single";this.select_single.value(l[0])}}}catch(k){console.debug("tools-select-content::value() - Skipped.")}}else{this.select_single&&this.select_single.value("__null__");this.select_multiple&&this.select_multiple.value("__null__");this.select_collection&&this.select_collection.value("__null__")}this.refresh()}var j=this._select().value();if(!(j instanceof Array)){j=[j]}var f={batch:this.mode=="single"&&this.current!="single",values:[]};for(var g in j){f.values.push({id:j[g],src:this.list[this.current].type})}return f},validate:function(){return this._select().validate()},refresh:function(){this.button_type.value(this.current);for(var g in this.list){var f=this.list[g].field.$el;if(this.current==g){f.show()}else{f.hide()}}if(this.mode=="single"&&this.current!="single"){this.$batch.show()}else{this.$batch.hide()}},_select:function(){return this.list[this.current].field}});return{View:d}});
\ No newline at end of file
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b static/scripts/packed/mvc/ui/ui-portlet.js
--- a/static/scripts/packed/mvc/ui/ui-portlet.js
+++ b/static/scripts/packed/mvc/ui/ui-portlet.js
@@ -1,1 +1,1 @@
-define(["utils/utils"],function(a){var b=Backbone.View.extend({visible:false,optionsDefault:{title:"",icon:"",buttons:null,body:null,scrollable:true,nopadding:false,operations:null,placement:"bottom",cls:"ui-portlet",operations_flt:"right"},$title:null,$content:null,$buttons:null,$operations:null,$header:null,initialize:function(e){this.options=a.merge(e,this.optionsDefault);this.setElement(this._template(this.options));this.$content=this.$el.find(".content");this.$title=this.$el.find(".portlet-title-text");this.$header=this.$el.find(".portlet-header");var d=this.$el.find(".portlet-content");if(this.options.nopadding){d.css("padding","0px");this.$content.css("padding","0px")}this.$buttons=$(this.el).find(".buttons");if(this.options.buttons){var c=this;$.each(this.options.buttons,function(f,g){g.$el.prop("id",f);c.$buttons.append(g.$el)})}else{this.$buttons.remove()}this.$operations=$(this.el).find(".portlet-operations");if(this.options.operations){var c=this;$.each(this.options.operations,function(f,g){g.$el.prop("id",f);c.$operations.append(g.$el)})}if(this.options.body){this.append(this.options.body)}},append:function(d,c){if(c){this.$content.append(d)}else{this.$content.append(a.wrap(d))}},content:function(){return this.$content},show:function(){this.$el.fadeIn("fast");this.visible=true},hide:function(){this.$el.fadeOut("fast");this.visible=false},enableButton:function(c){this.$buttons.find("#"+c).prop("disabled",false)},disableButton:function(c){this.$buttons.find("#"+c).prop("disabled",true)},hideOperation:function(c){this.$operations.find("#"+c).hide()},showOperation:function(c){this.$operations.find("#"+c).show()},setOperation:function(e,d){var c=this.$operations.find("#"+e);c.off("click");c.on("click",d)},title:function(d){var c=this.$title;if(d){c.html(d)}return c.html()},_template:function(d){var c='<div id="'+d.id+'" class="'+d.cls+'">';if(d.title){c+='<div class="portlet-header"><div class="portlet-operations" style="float: '+d.operations_flt+';"></div><div class="portlet-title">';if(d.icon){c+='<i class="icon fa '+d.icon+'"> </i>'}c+='<span class="portlet-title-text">'+d.title+"</span></div></div>"}c+='<div class="portlet-content">';if(d.placement=="top"){c+='<div class="buttons"></div>'}c+='<div class="content"></div>';if(d.placement=="bottom"){c+='<div class="buttons"></div>'}c+="</div></div>";return c}});return{View:b}});
\ No newline at end of file
+define(["utils/utils"],function(a){var b=Backbone.View.extend({visible:false,optionsDefault:{title:"",icon:"",buttons:null,body:null,scrollable:true,nopadding:false,operations:null,placement:"bottom",cls:"ui-portlet",operations_flt:"right"},$title:null,$content:null,$buttons:null,$operations:null,$header:null,initialize:function(e){this.options=a.merge(e,this.optionsDefault);this.setElement(this._template(this.options));this.$content=this.$el.find(".content");this.$title=this.$el.find(".portlet-title-text");this.$header=this.$el.find(".portlet-header");var d=this.$el.find(".portlet-content");if(this.options.nopadding){d.css("padding","0px");this.$content.css("padding","0px")}this.$buttons=$(this.el).find(".buttons");if(this.options.buttons){var c=this;$.each(this.options.buttons,function(f,g){g.$el.prop("id",f);c.$buttons.append(g.$el)})}else{this.$buttons.remove()}this.$operations=$(this.el).find(".portlet-operations");if(this.options.operations){var c=this;$.each(this.options.operations,function(f,g){g.$el.prop("id",f);c.$operations.append(g.$el)})}if(this.options.body){this.append(this.options.body)}},append:function(c){this.$content.append(c)},content:function(){return this.$content},show:function(){this.$el.fadeIn("fast");this.visible=true},hide:function(){this.$el.fadeOut("fast");this.visible=false},enableButton:function(c){this.$buttons.find("#"+c).prop("disabled",false)},disableButton:function(c){this.$buttons.find("#"+c).prop("disabled",true)},hideOperation:function(c){this.$operations.find("#"+c).hide()},showOperation:function(c){this.$operations.find("#"+c).show()},setOperation:function(e,d){var c=this.$operations.find("#"+e);c.off("click");c.on("click",d)},title:function(d){var c=this.$title;if(d){c.html(d)}return c.html()},_template:function(d){var c='<div id="'+d.id+'" class="'+d.cls+'">';if(d.title){c+='<div class="portlet-header"><div class="portlet-operations" style="float: '+d.operations_flt+';"></div><div class="portlet-title">';if(d.icon){c+='<i class="icon fa '+d.icon+'"> </i>'}c+='<span class="portlet-title-text">'+d.title+"</span></div></div>"}c+='<div class="portlet-content">';if(d.placement=="top"){c+='<div class="buttons"></div>'}c+='<div class="content"></div>';if(d.placement=="bottom"){c+='<div class="buttons"></div>'}c+="</div></div>";return c}});return{View:b}});
\ No newline at end of file
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b static/scripts/packed/utils/utils.js
--- a/static/scripts/packed/utils/utils.js
+++ b/static/scripts/packed/utils/utils.js
@@ -1,1 +1,1 @@
-define(["libs/underscore"],function(m){function n(r,q){for(var o in r){var p=r[o];if(p&&typeof(p)=="object"){q(p);n(p,q)}}}function d(o){return $("<div/>").text(o).html()}function l(p){if(!(p instanceof Array)){p=[p]}for(var o in p){if(["__null__","__undefined__","None",null,undefined].indexOf(p[o])>-1){return false}}return true}function h(o){var o=o.toString();if(o){o=o.replace(/,/g,", ");var p=o.lastIndexOf(", ");if(p!=-1){o=o.substr(0,p)+" or "+o.substr(p+1)}return o}return""}function e(o){top.__utils__get__=top.__utils__get__||{};if(o.cache&&top.__utils__get__[o.url]){o.success&&o.success(top.__utils__get__[o.url]);console.debug("utils.js::get() - Fetching from cache ["+o.url+"].")}else{i({url:o.url,data:o.data,success:function(p){top.__utils__get__[o.url]=p;o.success&&o.success(p)},error:function(p){o.error&&o.error(p)}})}}function i(p){var o={contentType:"application/json",type:p.type||"GET",data:p.data||{},url:p.url};if(o.type=="GET"||o.type=="DELETE"){if(o.url.indexOf("?")==-1){o.url+="?"}else{o.url+="&"}o.url=o.url+$.param(o.data,true);o.data=null}else{o.dataType="json";o.url=o.url;o.data=JSON.stringify(o.data)}$.ajax(o).done(function(q){if(typeof q==="string"){try{q=q.replace("Infinity,",'"Infinity",');q=jQuery.parseJSON(q)}catch(r){console.debug(r)}}p.success&&p.success(q)}).fail(function(r){var q=null;try{q=jQuery.parseJSON(r.responseText)}catch(s){q=r.responseText}p.error&&p.error(q,r)})}function j(r,o){var p=$('<div class="'+r+'"></div>');p.appendTo(":eq(0)");var q=p.css(o);p.remove();return q}function g(o){if(!$('link[href^="'+o+'"]').length){$('<link href="'+galaxy_config.root+o+'" rel="stylesheet">').appendTo("head")}}function k(o,p){if(o){return m.defaults(o,p)}else{return p}}function b(p,r){var q="";if(p>=100000000000){p=p/100000000000;q="TB"}else{if(p>=100000000){p=p/100000000;q="GB"}else{if(p>=100000){p=p/100000;q="MB"}else{if(p>=100){p=p/100;q="KB"}else{if(p>0){p=p*10;q="b"}else{return"<strong>-</strong>"}}}}}var o=(Math.round(p)/10);if(r){return o+" "+q}else{return"<strong>"+o+"</strong> "+q}}function a(){return"x"+Math.random().toString(36).substring(2,9)}function c(o){var p=$("<p></p>");p.append(o);return p}function f(){var q=new Date();var o=(q.getHours()<10?"0":"")+q.getHours();var p=(q.getMinutes()<10?"0":"")+q.getMinutes();var r=q.getDate()+"/"+(q.getMonth()+1)+"/"+q.getFullYear()+", "+o+":"+p;return r}return{cssLoadFile:g,cssGetAttribute:j,get:e,merge:k,bytesToString:b,uuid:a,time:f,wrap:c,request:i,sanitize:d,textify:h,validate:l,deepeach:n}});
\ No newline at end of file
+define(["libs/underscore"],function(l){function m(q,p){for(var n in q){var o=q[n];if(o&&typeof(o)=="object"){p(o);m(o,p)}}}function c(n){return $("<div/>").text(n).html()}function k(o){if(!(o instanceof Array)){o=[o]}for(var n in o){if(["__null__","__undefined__","None",null,undefined].indexOf(o[n])>-1){return false}}return true}function g(n){var n=n.toString();if(n){n=n.replace(/,/g,", ");var o=n.lastIndexOf(", ");if(o!=-1){n=n.substr(0,o)+" or "+n.substr(o+1)}return n}return""}function d(n){top.__utils__get__=top.__utils__get__||{};if(n.cache&&top.__utils__get__[n.url]){n.success&&n.success(top.__utils__get__[n.url]);console.debug("utils.js::get() - Fetching from cache ["+n.url+"].")}else{h({url:n.url,data:n.data,success:function(o){top.__utils__get__[n.url]=o;n.success&&n.success(o)},error:function(o){n.error&&n.error(o)}})}}function h(o){var n={contentType:"application/json",type:o.type||"GET",data:o.data||{},url:o.url};if(n.type=="GET"||n.type=="DELETE"){if(n.url.indexOf("?")==-1){n.url+="?"}else{n.url+="&"}n.url=n.url+$.param(n.data,true);n.data=null}else{n.dataType="json";n.url=n.url;n.data=JSON.stringify(n.data)}$.ajax(n).done(function(p){if(typeof p==="string"){try{p=p.replace("Infinity,",'"Infinity",');p=jQuery.parseJSON(p)}catch(q){console.debug(q)}}o.success&&o.success(p)}).fail(function(q){var p=null;try{p=jQuery.parseJSON(q.responseText)}catch(r){p=q.responseText}o.error&&o.error(p,q)})}function i(q,n){var o=$('<div class="'+q+'"></div>');o.appendTo(":eq(0)");var p=o.css(n);o.remove();return p}function f(n){if(!$('link[href^="'+n+'"]').length){$('<link href="'+galaxy_config.root+n+'" rel="stylesheet">').appendTo("head")}}function j(n,o){if(n){return l.defaults(n,o)}else{return o}}function b(o,q){var p="";if(o>=100000000000){o=o/100000000000;p="TB"}else{if(o>=100000000){o=o/100000000;p="GB"}else{if(o>=100000){o=o/100000;p="MB"}else{if(o>=100){o=o/100;p="KB"}else{if(o>0){o=o*10;p="b"}else{return"<strong>-</strong>"}}}}}var n=(Math.round(o)/10);if(q){return n+" "+p}else{return"<strong>"+n+"</strong> "+p}}function a(){return"x"+Math.random().toString(36).substring(2,9)}function e(){var p=new Date();var n=(p.getHours()<10?"0":"")+p.getHours();var o=(p.getMinutes()<10?"0":"")+p.getMinutes();var q=p.getDate()+"/"+(p.getMonth()+1)+"/"+p.getFullYear()+", "+n+":"+o;return q}return{cssLoadFile:f,cssGetAttribute:i,get:d,merge:j,bytesToString:b,uuid:a,time:e,request:h,sanitize:c,textify:g,validate:k,deepeach:m}});
\ No newline at end of file
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b static/scripts/utils/utils.js
--- a/static/scripts/utils/utils.js
+++ b/static/scripts/utils/utils.js
@@ -219,16 +219,6 @@
};
/**
- * Wrap an dom element into a paragraph
- * @param{Element} $el - DOM element to be wrapped
- */
-function wrap($el) {
- var wrapper = $('<p></p>');
- wrapper.append($el);
- return wrapper;
-};
-
-/**
* Create a time stamp
*/
function time() {
@@ -256,7 +246,6 @@
bytesToString: bytesToString,
uuid: uuid,
time: time,
- wrap: wrap,
request: request,
sanitize: sanitize,
textify: textify,
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b static/style/blue/base.css
--- a/static/style/blue/base.css
+++ b/static/style/blue/base.css
@@ -1396,18 +1396,11 @@
.upload-header .select2-choice{max-height:20px;line-height:18px;background:transparent;text-align:center;font-weight:normal}.upload-header .select2-choice .select2-arrow b{background-position:0 -3px}
.upload-top{height:5%;text-align:center}.upload-top .upload-info{margin-top:0px;font-weight:normal;text-align:center}
.no-highlight,.ui-button-icon,.ui-portlet,.ui-portlet-repeat,.ui-portlet-limited,.ui-portlet-section,.ui-portlet-narrow{-webkit-user-select:none;-moz-user-select:none;-khtml-user-select:none;-ms-user-select:none;}
+.ui-margin-top{padding-top:5px !important}
+.ui-margin-bottom{margin-bottom:5px !important}
.ui-error{-moz-border-radius:3px;border-radius:3px;background:#f9c7c5;padding:5px}
-.ui-table-form-error{display:none}.ui-table-form-error .ui-table-form-error-text{padding-left:5px}
-.ui-table tbody,.ui-table-plain tbody{cursor:pointer}
-.ui-table .ui-table-form-section,.ui-table-plain .ui-table-form-section{border-left:solid 3px #ebd9b2;border-radius:5px !important;padding-left:10px}
-.ui-table-plain{table-layout:fixed}.ui-table-plain tbody{cursor:auto !important}.ui-table-plain tbody td{padding:5px 0px 5px 0px !important;border:none !important}
-.ui-table-form-element .ui-table-form-title-optional{font-weight:bold;text-decoration:underline;cursor:pointer}
-.ui-table-form-element .ui-table-form-field{margin-top:5px}
-.ui-table-form-title-strong{font-weight:bold}
-.ui-table-form-info{clear:both !important}
-.ui-table-form-separator{font-weight:bold;font-size:0.9em}
.ui-label{font-weight:bold}
-.ui-message{padding:2px 10px 2px 10px;margin-bottom:5px}
+.ui-message{padding:2px 10px 2px 10px;margin:0px}
.ui-icon{font-size:1.2em}
.ui-button-icon{height:auto !important}.ui-button-icon ul i{font-size:1.2em;margin-right:5px;position:relative;top:1px}
.ui-button-icon .button{margin-right:5px;margin-left:5px}.ui-button-icon .button .title{position:relative;font-size:0.8em;font-weight:normal;top:-1px}
@@ -1417,19 +1410,27 @@
.ui-button-icon-plain{border:none !important;background:none !important;height:inherit !important;width:inherit !important;padding-right:3px !important}
.ui-tabs .ui-tabs-add{font-size:0.8em;margin-right:5px}
.ui-tabs .ui-tabs-delete{font-size:0.8em;margin-left:5px;cursor:pointer}
+.ui-table tbody,.ui-table-plain tbody{cursor:pointer}
+.ui-table-plain{table-layout:fixed}.ui-table-plain tbody{cursor:auto !important}.ui-table-plain tbody td{padding:0px !important;border:none !important}
+.ui-table-plain .ui-table-section{border-left:solid 3px #ebd9b2;border-radius:5px !important;margin-bottom:5px;padding-left:10px}
+.ui-table-form-element{margin-top:5px;margin-bottom:5px}.ui-table-form-element .ui-table-form-title-optional{font-weight:bold;text-decoration:underline;cursor:pointer}
+.ui-table-form-element .ui-table-form-field{margin-top:5px}
+.ui-table-form-title-strong{font-weight:bold}
+.ui-table-form-info{clear:both !important}
+.ui-table-form-separator{font-weight:bold;font-size:0.9em}
+.ui-table-form-error{display:none}.ui-table-form-error .ui-table-form-error-text{padding-left:5px}
.ui-portlet,.ui-portlet-repeat,.ui-portlet-limited,.ui-portlet-section,.ui-portlet-narrow,.ui-portlet-repeat,.ui-portlet-limited,.ui-portlet-section,.ui-portlet-narrow{border:solid #d6b161 1px;border-radius:3px;position:relative;clear:both;width:auto;height:100%}.ui-portlet .portlet-header,.ui-portlet-limited .portlet-header,.ui-portlet-narrow .portlet-header{background:#ebd9b2;border-bottom:solid #d6b161 1px;padding:2px 8px;overflow:visible;float:right;width:100%}.ui-portlet .portlet-header .portlet-title,.ui-portlet-limited .portlet-header .portlet-title,.ui-portlet-narrow .portlet-header .portlet-title{display:inline;vertical-align:middle}.ui-portlet .portlet-header .portlet-title .portlet-title-text,.ui-portlet-limited .portlet-header .portlet-title .portlet-title-text,.ui-portlet-narrow .portlet-header .portlet-title .portlet-title-text{vertical-align:middle;line-height:22px}
.ui-portlet .portlet-header .portlet-title .icon,.ui-portlet-limited .portlet-header .portlet-title .icon,.ui-portlet-narrow .portlet-header .portlet-title .icon{font-size:1.2em;vertical-align:middle}
.ui-portlet .portlet-header .portlet-operations .ui-button-icon,.ui-portlet-limited .portlet-header .portlet-operations .ui-button-icon,.ui-portlet-narrow .portlet-header .portlet-operations .ui-button-icon{margin-left:5px}
-.ui-portlet .portlet-buttons,.ui-portlet-limited .portlet-buttons,.ui-portlet-narrow .portlet-buttons{height:50px;padding:10px}
-.ui-portlet .portlet-content,.ui-portlet-limited .portlet-content,.ui-portlet-narrow .portlet-content{height:inherit;padding:10px;clear:both}.ui-portlet .portlet-content .content,.ui-portlet-limited .portlet-content .content,.ui-portlet-narrow .portlet-content .content{padding:0px;height:100%;width:100%}.ui-portlet .portlet-content .content .buttons,.ui-portlet-limited .portlet-content .content .buttons,.ui-portlet-narrow .portlet-content .content .buttons{height:50px;padding:10px}
-.ui-portlet-repeat,.ui-portlet-section,.ui-portlet-section{border:none;border-left:solid 3px #ebd9b2;border-radius:5px}.ui-portlet-repeat .portlet-header,.ui-portlet-section .portlet-header{background:#ebd9b2;border-radius:5px;border-bottom-left-radius:0px;border-top-left-radius:0px;padding:0px 2px}.ui-portlet-repeat .portlet-header .portlet-title-text,.ui-portlet-section .portlet-header .portlet-title-text{vertical-align:middle;line-height:20px !important}
-.ui-portlet-repeat .portlet-content,.ui-portlet-section .portlet-content{padding-left:10px}
+.ui-portlet .portlet-content,.ui-portlet-limited .portlet-content,.ui-portlet-narrow .portlet-content{height:inherit;padding-left:10px;padding-right:10px;clear:both}.ui-portlet .portlet-content .content,.ui-portlet-limited .portlet-content .content,.ui-portlet-narrow .portlet-content .content{padding:0px;height:100%;width:100%}
+.ui-portlet .portlet-content .buttons,.ui-portlet-limited .portlet-content .buttons,.ui-portlet-narrow .portlet-content .buttons{margin-top:5px;margin-bottom:5px}
+.ui-portlet-repeat,.ui-portlet-section,.ui-portlet-section{border:none;border-left:solid 3px #ebd9b2;border-radius:5px;margin-bottom:5px}.ui-portlet-repeat .portlet-header,.ui-portlet-section .portlet-header{background:#ebd9b2;border-radius:5px;border-bottom-left-radius:0px;border-top-left-radius:0px;padding:0px 2px}.ui-portlet-repeat .portlet-header .portlet-title-text,.ui-portlet-section .portlet-header .portlet-title-text{vertical-align:middle;line-height:20px !important}
+.ui-portlet-repeat .portlet-content,.ui-portlet-section .portlet-content{padding-right:0px}
.ui-portlet-section{border-left:solid 3px #dfe5f9}.ui-portlet-section .portlet-header{background:#dfe5f9;border-bottom:solid #b4c2f1 1px}
-.ui-portlet-narrow{border:none}.ui-portlet-narrow .portlet-header{border-radius:3px;margin-bottom:5px}.ui-portlet-narrow .portlet-header .portlet-operations .ui-button-icon{margin-left:3px}
+.ui-portlet-narrow{border:none}.ui-portlet-narrow .portlet-header{border-radius:3px}.ui-portlet-narrow .portlet-header .portlet-operations .ui-button-icon{margin-left:3px}
+.ui-portlet-narrow .ui-portlet-repeat .portlet-header,.ui-portlet-narrow .ui-portlet-section .portlet-header{border-radius:5px;border-bottom-left-radius:0px;border-top-left-radius:0px}
.ui-portlet-narrow .portlet-content{padding:0px}
-.ui-portlet-narrow .ui-table-form-section{padding-left:5px}
-.ui-portlet-narrow .ui-portlet-repeat .portlet-header,.ui-portlet-narrow .ui-portlet-section .portlet-header{border-radius:5px;border-bottom-left-radius:0px;border-top-left-radius:0px;margin-bottom:0px}
-.ui-portlet-narrow .ui-portlet-repeat .portlet-content,.ui-portlet-narrow .ui-portlet-section .portlet-content{padding:0px;padding-left:5px}
+.ui-portlet-narrow .ui-table-section,.ui-portlet-narrow .ui-portlet-repeat .portlet-content,.ui-portlet-narrow .ui-portlet-section .portlet-content{padding-left:5px}
.ui-portlet-limited,.ui-portlet-narrow,.ui-portlet-narrow{max-width:900px}
.ui-popover{max-width:700px;display:none}.ui-popover .popover-close{position:absolute;right:10px;top:7px;font-size:1.2em;cursor:pointer}
.ui-popover .popover-title{padding:4px 10px}
diff -r 7bb00c5c04c92d4ff664de7efcf0e8c071eba4a2 -r 015395841d805061261913e92d408121766e470b static/style/src/less/ui.less
--- a/static/style/src/less/ui.less
+++ b/static/style/src/less/ui.less
@@ -1,3 +1,4 @@
+// prevents highlighting i.e. text selection on double click
.no-highlight {
-webkit-user-select: none; /* webkit (safari, chrome) browsers */
-moz-user-select: none; /* mozilla browsers */
@@ -5,73 +6,30 @@
-ms-user-select: none; /* IE10+ */
}
+// default margins
+@ui-margin-vertical: 5px;
+@ui-margin-horizontal: 5px;
+
+// margins
+.ui-margin-top {
+ padding-top: @ui-margin-vertical !important;
+}
+
+.ui-margin-bottom {
+ margin-bottom: @ui-margin-vertical !important;
+}
+
+.ui-margin-both {
+ &:extend(ui-margin-top);
+ &:extend(ui-margin-bottom);
+}
+
+// non-interactive elements
.ui-error {
-moz-border-radius: @border-radius-base;
border-radius: @border-radius-base;
background: @state-danger-bg;
- padding: 5px;
-}
-
-.ui-table-form-error {
- display: none;
- .ui-table-form-error-text {
- padding-left: 5px;
- }
-}
-
-.ui-table {
- &:extend(.grid);
-
- tbody {
- cursor: pointer;
- td {
- &:extend(.grid tbody td);
- }
- }
-
- .ui-table-form-section {
- border-left: solid 3px @form-heading-bg;
- border-radius: @border-radius-large !important;
- padding-left: 10px;
- }
-}
-
-.ui-table-plain {
- &:extend(.ui-table all);
- table-layout:fixed;
-
- tbody {
- cursor: auto !important;
- td {
- padding: 5px 0px 5px 0px !important;
- border: none !important;
- }
- }
-}
-
-.ui-table-form-element {
- .ui-table-form-title-optional {
- font-weight: bold;
- text-decoration: underline;
- cursor: pointer;
- }
- .ui-table-form-field {
- margin-top: 5px;
- }
-}
-
-.ui-table-form-title-strong {
- font-weight: bold;
-}
-
-.ui-table-form-info {
- &:extend(.toolParamHelp);
- clear: both !important;
-}
-
-.ui-table-form-separator {
- font-weight: bold;
- font-size: 0.9em;
+ padding: @ui-margin-vertical;
}
.ui-label {
@@ -80,25 +38,26 @@
.ui-message {
padding: 2px 10px 2px 10px;
- margin-bottom: 5px;
+ margin: 0px;
}
.ui-icon {
font-size: 1.2em;
}
+// buttons
.ui-button-icon {
&:extend(.icon-btn);
&:extend(.no-highlight);
height: auto !important;
ul {
i {
- font-size: 1.2em; margin-right: 5px; position: relative; top: 1px;
+ font-size: 1.2em; margin-right: @ui-margin-horizontal; position: relative; top: 1px;
}
}
.button {
- margin-right: 5px;
- margin-left: 5px;
+ margin-right: @ui-margin-horizontal;
+ margin-left: @ui-margin-horizontal;
.title {
position: relative;
@@ -130,19 +89,88 @@
padding-right: 3px !important;
}
+// tabs
.ui-tabs {
.ui-tabs-add {
font-size : 0.8em;
- margin-right : 5px;
+ margin-right : @ui-margin-horizontal;
}
.ui-tabs-delete {
font-size : 0.8em;
- margin-left : 5px;
+ margin-left : @ui-margin-horizontal;
cursor : pointer;
}
}
+// tables
+.ui-table {
+ &:extend(.grid);
+
+ tbody {
+ cursor: pointer;
+ td {
+ &:extend(.grid tbody td);
+ }
+ }
+}
+
+.ui-table-plain {
+ &:extend(.ui-table all);
+ table-layout:fixed;
+
+ tbody {
+ cursor: auto !important;
+ td {
+ padding: 0px !important;
+ border: none !important;
+ }
+ }
+
+ .ui-table-section {
+ border-left: solid 3px @form-heading-bg;
+ border-radius: @border-radius-large !important;
+ margin-bottom: @ui-margin-vertical;
+ padding-left: 10px;
+ }
+}
+
+// table form elements
+.ui-table-form-element {
+ .ui-table-form-title-optional {
+ font-weight: bold;
+ text-decoration: underline;
+ cursor: pointer;
+ }
+ .ui-table-form-field {
+ margin-top: @ui-margin-vertical;
+ }
+ margin-top: @ui-margin-vertical;
+ margin-bottom: @ui-margin-vertical;
+}
+
+.ui-table-form-title-strong {
+ font-weight: bold;
+}
+
+.ui-table-form-info {
+ &:extend(.toolParamHelp);
+ clear: both !important;
+}
+
+.ui-table-form-separator {
+ font-weight: bold;
+ font-size: 0.9em;
+}
+
+.ui-table-form-error {
+ display: none;
+ .ui-table-form-error-text {
+ padding-left: @ui-margin-horizontal;
+ }
+}
+
+// portlets
.ui-portlet {
&:extend(.no-highlight);
border: solid @form-border 1px;
@@ -174,30 +202,24 @@
}
.portlet-operations {
.ui-button-icon {
- margin-left: 5px;
+ margin-left: @ui-margin-horizontal;
}
}
}
- .portlet-buttons {
- height: 50px;
- padding: 10px;
- }
-
.portlet-content {
height: inherit;
- padding: 10px;
+ padding-left: 10px;
+ padding-right: 10px;
clear: both;
-
.content {
padding : 0px;
height : 100%;
width : 100%;
-
- .buttons {
- height: 50px;
- padding: 10px;
- }
+ }
+ .buttons {
+ margin-top: @ui-margin-vertical;
+ margin-bottom: @ui-margin-vertical;
}
}
}
@@ -207,6 +229,7 @@
border: none;
border-left: solid 3px @form-heading-bg;
border-radius: @border-radius-large;
+ margin-bottom: @ui-margin-vertical;
.portlet-header {
background: @form-heading-bg;
border-radius: @border-radius-large;
@@ -218,9 +241,8 @@
line-height: 20px !important;
}
}
-
.portlet-content {
- padding-left: 10px;
+ padding-right: 0px;
}
}
@@ -238,30 +260,24 @@
border: none;
.portlet-header {
border-radius: @border-radius-base;
- margin-bottom: 5px;
.portlet-operations {
.ui-button-icon {
margin-left: 3px;
}
}
}
- .portlet-content {
- padding: 0px;
- }
- .ui-table-form-section {
- padding-left: 5px;
- }
.ui-portlet-repeat {
.portlet-header {
border-radius: @border-radius-large;
border-bottom-left-radius: 0px;
border-top-left-radius: 0px;
- margin-bottom: 0px;
}
- .portlet-content {
- padding: 0px;
- padding-left: 5px;
- }
+ }
+ .portlet-content {
+ padding: 0px;
+ }
+ .ui-table-section, .ui-portlet-repeat .portlet-content {
+ padding-left: @ui-margin-horizontal;
}
}
@@ -270,6 +286,7 @@
max-width: 900px;
}
+// popovers
.ui-popover {
max-width: 700px;
display: none;
@@ -287,6 +304,7 @@
}
}
+// input elements
.ui-input {
&:extend(.form-control);
background: transparent;
@@ -328,7 +346,7 @@
}
i {
- padding-right: 5px;
+ padding-right: @ui-margin-horizontal;
}
}
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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