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commit/galaxy-central: guerler: Ui: Minor style fix, Charts: Repack scripts
by commits-noreply＠bitbucket.org 10 Dec '14

10 Dec '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/eca8b8ed9103/ Changeset: eca8b8ed9103 User: guerler Date: 2014-12-10 15:51:37+00:00 Summary: Ui: Minor style fix, Charts: Repack scripts Affected #: 3 files diff -r a8aa8c67fe5335df93e3195bb46beb62783325bd -r eca8b8ed910366a2f72b778ace674e3126832e66 config/plugins/visualizations/charts/static/build-app.js --- a/config/plugins/visualizations/charts/static/build-app.js +++ b/config/plugins/visualizations/charts/static/build-app.js @@ -3,4 +3,4 @@ // (c) 2009-2013 Jeremy Ashkenas, DocumentCloud Inc. // Underscore may be freely distributed under the MIT license. -define("mvc/ui/ui-modal",[],function(){var 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n=this;$(this.el).on("click",function(){$(".tooltip").hide(),t.onclick&&!n.disabled&&t.onclick()}),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},disable:function(){this.$button.addClass("disabled"),this.disabled=!0},enable:function(){this.$button.removeClass("disabled"),this.disabled=!1},_template:function(e){var t="";e.title&&(t="width: auto;");var n='<div id="'+e.id+'" style="float: '+e.floating+"; "+t+'" class="'+e.cls+'">';return e.title?n+='<div class="button"><i class="icon fa '+e.icon+'"/> '+'<span class="title">'+e.title+"</span>"+"</div>":n+='<i class="icon fa '+e.icon+'"/>',n+="</div>",n}}),c=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",t.onclick)},_template:function(e){return'<div><a href="javascript:void(0)" class="ui-anchor 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'+e.cls+'">'}}),v=Backbone.View.extend({optionsDefault:{value:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options))},value:function(e){return e!==undefined&&this.$el.val(e),this.$el.val()},_template:function(e){return'<hidden id="'+e.id+'" value="'+e.value+'"/>'}});return{Anchor:c,Button:f,ButtonIcon:l,ButtonMenu:i,Icon:a,Image:o,Input:d,Label:u,Message:h,Modal:s,RadioButton:r.RadioButton,Checkbox:r.Checkbox,Radio:r.Radio,Searchbox:p,Select:t,Hidden:v,Slider:n}}),define("plugin/library/jobs",["utils/utils"],function(e){return Backbone.Model.extend({initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e,t,n,r,i){var s=this;e.state("wait","Requesting job results...");var o=e.get("dataset_id_job");o!=""?s._wait(e,r,i):s._submit(e,t,n,r,i)},cleanup:function(t){var n=this,r=t.get("dataset_id_job");r!=""&&(e.request({type:"PUT",url:config.root+"api/histories/none/contents/"+r,data:{deleted:!0},success:function(){n._refreshHdas()}}),t.set("dataset_id_job",""))},_submit:function(t,n,r,i,s){var o=this,u=t.id,a=t.get("type"),f=t.definition;data={tool_id:"charts",inputs:{input:{id:t.get("dataset_id"),src:"hda"},module:f.execute,columns:r,settings:n}},t.state("wait","Sending job request..."),e.request({type:"POST",url:config.root+"api/tools",data:data,success:function(e){if(!e.outputs||e.outputs.length==0)t.state("failed","Job submission failed. No response."),s&&s();else{o._refreshHdas();var n=e.outputs[0];t.state("wait","Your job has been queued. You may close the browser window. The job will run in the background."),t.set("dataset_id_job",n.id),o.app.storage.save(),o._wait(t,i,s)}},error:function(e){var n="";e&&e.message&&e.message.data&&e.message.data.input&&(n=e.message.data.input+"."),t.state("failed","This visualization requires the 'charts' tool. Please make sure it is installed. "+n),s&&s()}})},_wait:function(t,n,r){var i=this;e.request({type:"GET",url:config.root+"api/datasets/"+t.get("dataset_id_job"),data:{},success:function(e){var s=!1;switch(e.state){case"ok":t.state("wait","Job completed successfully..."),n&&n(e),s=!0;break;case"error":t.state("failed","Job has failed. Please check the history for details."),r&&r(e),s=!0;break;case"running":t.state("wait","Your job is running. You may close the browser window. The job will continue in the background.")}s||setTimeout(function(){i._wait(t,n,r)},i.app.config.get("query_timeout"))}})},_refreshHdas:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.refreshContents()}})}),define("plugin/library/datasets",["utils/utils"],function(e){return Backbone.Collection.extend({list:{},cache:{},initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e){e.groups?this._get_blocks(e):this._get_dataset(e.id,e.success,e.error)},_get_blocks:function(e){function c(i){l._get(i,function(){var s=!1;for(var o in e.groups){destination_group=e.groups[o],source_group=i.groups[o],destination_group.values||(destination_group.values=[]),destination_group.values=destination_group.values.concat(source_group.values);if(source_group.values.length==0){s=!0;break}}if(++f<u&&!s){n&&n(parseInt(f/u*100));var l=i.start+r;i=$.extend(!0,a,{start:l}),c(i)}else t()})}var t=e.success,n=e.progress,r=this.app.config.get("query_limit"),i=e.start||0,s=i+e.query_limit||i+this.app.config.get("query_limit"),o=Math.abs(s-i);if(o<=0){console.debug("FAILED - Datasets::request() - Invalid query range.");return}var u=Math.ceil(o/r)||1,a=$.extend(!0,{},e),f=0,l=this,h=$.extend(!0,a,{start:i});this._get_dataset(e.id,function(){c(h)})},_get_dataset:function(t,n,r){var i=this.list[t];if(i){n(i);return}var s=this;e.request({type:"GET",url:config.root+"api/datasets/"+t,success:function(e){switch(e.state){case"error":r&&r(e);break;default:s.list[t]=e,n(e)}}})},_block_id:function(e,t){return e.id+"_"+e.start+"_"+e.start+this.app.config.get("query_limit")+"_"+t},_get:function(e,t){e.start=e.start||0;var n=[],r={},i=0;for(var s in e.groups){var o=e.groups[s];for(var u in o.columns){var a=o.columns[u].index,f=this._block_id(e,a);if(this.cache[f]||a==="auto"||a==="zero")continue;!r[a]&&a!==undefined&&(r[a]=i,n.push(a),i++)}}if(n.length==0){this._fill_from_cache(e),t(e);return}var l={dataset_id:e.id,start:e.start,columns:n},c=this;this._fetch(l,function(r){for(var i in r){var s=n[i],o=c._block_id(e,s);c.cache[o]=r[i]}c._fill_from_cache(e),t(e)})},_fill_from_cache:function(e){var t=e.start;console.debug("Datasets::_fill_from_cache() - Filling request from cache at "+t+".");var n=0;for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s],u=this._block_id(e,o.index),a=this.cache[u];a&&(n=Math.max(n,a.length))}}n==0&&console.debug("Datasets::_fill_from_cache() - Reached data range limit.");for(var r in e.groups){var i=e.groups[r];i.values=[];for(var f=0;f<n;f++)i.values[f]={x:parseInt(f)+t}}for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s];switch(o.index){case"auto":for(var f=0;f<n;f++){var l=i.values[f];l[s]=parseInt(f)+t}break;case"zero":for(var f=0;f<n;f++){var l=i.values[f];l[s]=0}break;default:var u=this._block_id(e,o.index),a=this.cache[u];for(var f=0;f<n;f++){var l=i.values[f],c=a[f];isNaN(c)&&!o.is_label&&(c=0),l[s]=c}}}}},_fetch:function(t,n){var r=t.start?t.start:0,i=this.app.config.get("query_limit"),s=0;t.columns&&(s=t.columns.length,console.debug("Datasets::_fetch() - Fetching "+s+" column(s) at "+r+".")),s==0&&console.debug("Datasets::_fetch() - No columns requested");var o="";for(var u in t.columns)o+=t.columns[u]+",";o=o.substring(0,o.length-1);var a=this;e.request({type:"GET",url:config.root+"api/datasets/"+t.dataset_id,data:{data_type:"raw_data",provider:"dataset-column",limit:i,offset:r,indeces:o},success:function(e){var t=new Array(s);for(var r=0;r<s;r++)t[r]=[];for(var r in e.data){var i=e.data[r];for(var o in i){var u=i[o];u!==undefined&&u!=2147483647&&t[o].push(u)}}console.debug("Datasets::_fetch() - Fetching complete."),n(t)}})}})}),define("plugin/models/group",[],function(){return Backbone.Model.extend({defaults:{key:"Data label",date:""},reset:function(){this.clear({silent:!0}).set(this.defaults),this.trigger("reset",this)}})}),define("plugin/models/groups",["plugin/models/group"],function(e){return Backbone.Collection.extend({model:e})}),define("plugin/models/chart",["plugin/models/groups"],function(e){return Backbone.Model.extend({defaults:{id:null,title:"",type:"",date:null,state:"",state_info:"",modified:!1,dataset_id:"",dataset_id_job:""},initialize:function(t){this.groups=new e,this.settings=new Backbone.Model},reset:function(){this.clear({silent:!0}).set(this.defaults),this.groups.reset(),this.settings.clear(),this.trigger("reset",this)},copy:function(e){var t=this;t.clear({silent:!0}).set(this.defaults),t.set(e.attributes),t.settings=e.settings.clone(),t.groups.reset(),e.groups.each(function(e){t.groups.add(e.clone())}),t.trigger("change",t)},state:function(e,t){this.set("state",e),this.set("state_info",t),this.trigger("set:state"),console.debug("Chart:state() - "+t+" ("+e+")")}})});var Visualization=Backbone.Model.extend({defaults:{config:{}},urlRoot:function(){var e="/api/visualizations";return window.galaxy_config&&galaxy_config.root?galaxy_config.root+e:e},initialize:function(e){_.isObject(e.config)&&_.isObject(this.defaults.config)&&_.defaults(e.config,this.defaults.config),this._setUpListeners()},_setUpListeners:function(){},set:function(e,t){if(e==="config"){var n=this.get("config");_.isObject(n)&&(t=_.extend(_.clone(n),t))}return Backbone.Model.prototype.set.call(this,e,t),this},toString:function(){var e=this.get("id")||"";return this.get("title")&&(e+=":"+this.get("title")),"Visualization("+e+")"}}),VisualizationCollection=Backbone.Collection.extend({model:Visualization,url:function(){return galaxy_config.root+"api/visualizations"},initialize:function(e,t){t=t||{}},set:function(e,t){var n=this;e=_.map(e,function(e){var t=n.get(e.id);if(!t)return e;var r=t.toJSON();return _.extend(r,e),r}),Backbone.Collection.prototype.set.call(this,e,t)},toString:function(){return["VisualizationCollection(",[this.historyId,this.length].join(),")"].join("")}});define("mvc/visualization/visualization-model",function(){}),define("plugin/library/storage",["utils/utils","plugin/models/chart","plugin/models/group","mvc/visualization/visualization-model"],function(e,t,n){return Backbone.Model.extend({vis:null,initialize:function(e){this.app=e,this.chart=this.app.chart,this.options=this.app.options,this.id=this.options.id,this.vis=new Visualization({type:"charts",config:{dataset_id:this.options.config.dataset_id,chart_dict:{}}}),this.id&&(this.vis.id=this.id);var t=this.options.config.chart_dict;t&&(this.vis.get("config").chart_dict=t)},save:function(){var e=this.app.chart;this.vis.get("config").chart_dict={};var t=e.get("title");t!=""&&this.vis.set("title",t);var n={attributes:e.attributes,settings:e.settings.attributes,groups:[]};e.groups.each(function(e){n.groups.push(e.attributes)}),this.vis.get("config").chart_dict=n;var r=this;this.vis.save().fail(function(e,t,n){console.error(e,t,n)}).then(function(e){e&&e.id&&(r.id=e.id)})},load:function(){var e=this.vis.get("config").chart_dict;if(!e.attributes)return!1;var t=e.attributes.type;if(!t)return console.debug("Storage::load() - Chart type not provided. Invalid format."),!1;var r=this.app.types.get(t);if(!r)return console.debug("Storage::load() - Chart type not supported. Please re-configure the chart. Resetting chart."),!1;console.debug("Storage::load() - Loading chart type "+t+"."),this.chart.definition=r,this.chart.set(e.attributes),this.chart.state("ok","Loading saved visualization..."),this.chart.settings.set(e.settings);for(var i in e.groups)this.chart.groups.add(new n(e.groups[i]));return this.chart.set("modified",!1),!0}})}),define("utils/deferred",["utils/utils"],function(e){return Backbone.Model.extend({queue:[],process:{},counter:0,initialize:function(){this.on("refresh",function(){if(this.queue.length>0&&this.ready()){var e=this.queue[0];this.queue.splice(0,1),e&&e()}})},execute:function(e){this.queue.push(e),this.trigger("refresh")},register:function(){var t=e.uuid();return this.process[t]=!0,this.counter++,console.debug("Deferred:register() - Registering "+t),t},done:function(e){this.process[e]&&(delete this.process[e],this.counter--,console.debug("Deferred:done() - Unregistering "+e),this.trigger("refresh"))},reset:function(){this.queue=[]},ready:function(){return this.counter==0}})}),define("plugin/views/viewport",["mvc/ui/ui-portlet","mvc/ui/ui-misc","utils/utils"],function(e,t,n){return Backbone.View.extend({container_list:[],canvas_list:[],initialize:function(e,t){this.app=e,this.chart=this.app.chart,this.options=n.merge(t,this.optionsDefault),this.setElement($(this._template())),this._fullscreen(this.$el,100),this._createContainer("div");var r=this;this.chart.on("redraw",function(){r._draw(r.chart)}),this.chart.on("set:state",function(){var e=r.$el.find("#info"),t=r.$el.find(".charts-viewport-container"),n=e.find("#icon");n.removeClass(),e.show(),e.find("#text").html(r.chart.get("state_info"));var i=r.chart.get("state");switch(i){case"ok":e.hide(),t.show();break;case"failed":n.addClass("icon fa fa-warning"),t.hide();break;default:n.addClass("icon fa fa-spinner fa-spin"),t.show()}})},show:function(){this.$el.show()},hide:function(){this.$el.hide()},_fullscreen:function(e,t){e.css("height",$(window).height()-t),$(window).resize(function(){e.css("height",$(window).height()-t)})},_createContainer:function(e,t){t=t||1;for(var n in this.container_list)this.container_list[n].remove();this.container_list=[],this.canvas_list=[];for(var n=0;n<t;n++){var r=$(this._templateContainer(e,parseInt(100/t)));this.$el.append(r),this.container_list[n]=r,this.canvas_list[n]=r.find(".charts-viewport-canvas").attr("id")}},_draw:function(e){var t=this,n=this.app.deferred.register(),r=e.get("type");this.chart_definition=e.definition;var i=1;e.settings.get("use_panels")==="true"&&(i=e.groups.length),this._createContainer(this.chart_definition.tag,i),e.state("wait","Please wait...");if(!this.chart_definition.execute||this.chart_definition.execute&&e.get("modified"))this.app.jobs.cleanup(e),e.set("modified",!1);var t=this;require(["plugin/charts/"+this.app.chartPath(r)+"/wrapper"],function(r){if(t.chart_definition.execute)t.app.jobs.request(e,t._defaultSettingsString(e),t._defaultRequestString(e),function(){var i=new r(t.app,{process_id:n,chart:e,request_dictionary:t._defaultRequestDictionary(e),canvas_list:t.canvas_list})},function(){this.app.deferred.done(n)});else var i=new r(t.app,{process_id:n,chart:e,request_dictionary:t._defaultRequestDictionary(e),canvas_list:t.canvas_list})})},_defaultRequestString:function(e){var t="",n=0,r=this;return e.groups.each(function(e){n++;for(var i in r.chart_definition.columns)t+=i+"_"+n+":"+(parseInt(e.get(i))+1)+", "}),t.substring(0,t.length-2)},_defaultSettingsString:function(e){var t="";for(key in e.settings.attributes)t+=key+":"+e.settings.get(key)+", ";return t.substring(0,t.length-2)},_defaultRequestDictionary:function(e){var t={groups:[]};this.chart_definition.execute?t.id=e.get("dataset_id_job"):t.id=e.get("dataset_id");var r=0,i=this;return e.groups.each(function(e){var s={};for(var o in i.chart_definition.columns){var u=i.chart_definition.columns[o];s[o]=n.merge({index:e.get(o)},u)}t.groups.push({key:++r+":"+e.get("key"),columns:s})}),t},_template:function(){return'<div class="charts-viewport"><div id="info" class="info"><span id="icon" class="icon"/><span id="text" class="text" /></div></div>'},_templateContainer:function(e,t){return'<div class="charts-viewport-container" style="width:'+t+'%;">'+'<div id="menu"/>'+"<"+e+' id="'+n.uuid()+'" class="charts-viewport-canvas">'+"</div>"}})}),define("plugin/library/screenshot",["libs/underscore"],function(e){function t(e){e.$el.find("svg").length>0?r(e):n(e)}function n(e){try{var t=e.$el.find(".jqplot-target"),n=t.jqplotToImageStr({});n&&(window.location.href=n.replace("image/png","image/octet-stream"))}catch(r){console.debug("FAILED - Screenshot::_fromCanvas() - "+r),e.error&&e.error("Please reduce your chart to a single panel and try again.")}}function r(e){var t=e.$el,n=e.url,r=e.name,s=new XMLSerializer,o=document.createElement("canvas"),u=$(o),a=t.find("svg").length,f=t.find("svg").first(),l=parseInt(f.css("height")),c=parseInt(f.css("width"));u.attr("width",c*a),u.attr("height",l),(!o.getContext||!o.getContext("2d"))&&alert("Your browser doesn't support this feature, please use a modern browser");var h=o.getContext("2d"),p=0;t.find("svg").each(function(){var e=$(this);e.attr({version:"1.1",xmlns:"http://www.w3.org/2000/svg",width:c,height:l});var t=s.serializeToString(this);h.drawSvg(t,p,0,c,l),p+=c}),window.location.href=i(o,o.getContext("2d"),"white").replace("image/png","image/octet-stream")}function i(e,t,n){var r=e.width,i=e.height,s;if(n){s=t.getImageData(0,0,r,i);var o=t.globalCompositeOperation;t.globalCompositeOperation="destination-over",t.fillStyle=n,t.fillRect(0,0,r,i)}var u=e.toDataURL("image/png");return n&&(t.clearRect(0,0,r,i),t.putImageData(s,0,0),t.globalCompositeOperation=o),u}function s(e){window.location.href="data:none/none;base64,"+btoa(a(e).string)}function o(e){for(var t in document.styleSheets){var n=document.styleSheets[t],r=n.cssRules;if(r)for(var i=0,s=r.length;i<s;i++)try{e.find(r[i].selectorText).each(function(e,t){t.style.cssText+=r[i].style.cssText})}catch(o){}}}function u(e){var t=a(e),n={filename:name||"chart",type:"application/pdf",height:t.height,width:t.width,scale:2,svg:t.string},r=$("body"),i=r.find("#viewport-form");i.length===0&&(i=$("<form>",{id:"viewport-form",method:"post",action:"http://export.highcharts.com/",display:"none"}),r.append(i)),i.empty();for(name in n){var s=$("<input/>",{type:"hidden",name:name,value:n[name]});i.append(s)}try{i.submit()}catch(o){console.log(o)}}function a(e){if(e.$el.find("svg").length==0&&e.error){e.error("No SVG found. This chart type does not support SVG/PDF export.");return}var t=e.$el,n=t.find("svg").length,r=parseInt(t.find("svg").first().css("height")),i=parseInt(t.find("svg").first().css("width")),s=new XMLSerializer,u=$("<svg/>");u.attr({version:"1.1",xmlns:"http://www.w3.org/2000/svg",width:i*n,height:r});var a="",f=0;return t.find("svg").each(function(){var e=$(this).clone();o(e);var t=$('<g transform="translate('+f+', 0)">');t.append(e.find("g").first()),u.append(t),f+=i}),{string:s.serializeToString(u[0]),height:r,width:i}}return{createPNG:t,createSVG:s,createPDF:u}}),define("plugin/views/viewer",["utils/utils","mvc/ui/ui-misc","mvc/ui/ui-portlet","plugin/views/viewport","plugin/library/screenshot"],function(e,t,n,r,i){return Backbone.View.extend({initialize:function(e,s){this.app=e,this.chart=this.app.chart,this.viewport_view=new r(e);var o=this;this.message=new t.Message;var u=new t.ButtonMenu({icon:"fa-camera",title:"Screenshot",tooltip:"Download as PNG, SVG or PDF file"});u.addMenu({id:"button-png",title:"Save as PNG",icon:"fa-file",onclick:function(){o._wait(o.chart,function(){i.createPNG({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}),u.addMenu({id:"button-svg",title:"Save as SVG",icon:"fa-file-text-o",onclick:function(){o._wait(o.chart,function(){i.createSVG({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}),u.addMenu({id:"button-png",title:"Save as PDF",icon:"fa-file-o",onclick:function(){o.app.modal.show({title:"Send chart data for PDF creation",body:"Galaxy does not provide integrated PDF export scripts. You may click 'Continue' to create the PDF by using a 3rd party service (https://export.highcharts.com)",buttons:{Cancel:function(){o.app.modal.hide()},Continue:function(){o.app.modal.hide(),o._wait(o.chart,function(){i.createPDF({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}})}}),this.portlet=new n.View({icon:"fa-bar-chart-o",title:"Viewport",scrollable:!1,operations:{edit_button:new t.ButtonIcon({icon:"fa-edit",tooltip:"Customize this chart",title:"Editor",onclick:function(){o._wait(o.chart,function(){o.app.go("editor")})}}),picture_button_menu:u}}),this.portlet.append(this.message.$el),this.portlet.append(this.viewport_view.$el),this.setElement(this.portlet.$el);var o=this;this.chart.on("change:title",function(){o._refreshTitle()})},show:function(){this.$el.show(),$(window).trigger("resize")},hide:function(){this.$el.hide()},_refreshTitle:function(){var e=this.chart.get("title");this.portlet.title(e)},_wait:function(e,t){this.app.deferred.ready()?t():this.message.update({message:"Your chart is currently being processed. Please wait and try again."})}})}),define("mvc/ui/ui-tabs",["utils/utils"],function(e){var t=Backbone.View.extend({optionsDefault:{title_new:"",operations:null,onnew:null,max:null,onchange:null},initialize:function(t){this.visible=!1,this.$nav=null,this.$content=null,this.first_tab=null,this.current_id=null,this.options=e.merge(t,this.optionsDefault);var n=$(this._template(this.options));this.$nav=n.find(".tab-navigation"),this.$content=n.find(".tab-content"),this.setElement(n),this.list={};var r=this;this.options.operations&&$.each(this.options.operations,function(e,t){t.$el.prop("id",e),r.$nav.find(".operations").append(t.$el)});if(this.options.onnew){var i=$(this._template_tab_new(this.options));this.$nav.append(i),i.tooltip({title:"Add a new tab",placement:"bottom",container:r.$el}),i.on("click",function(e){i.tooltip("hide"),r.options.onnew()})}},size:function(){return _.size(this.list)},current:function(){return this.$el.find(".tab-pane.active").attr("id")},add:function(e){var t=this,n=e.id,r=$(this._template_tab(e)),i=$(this._template_tab_content(e));this.list[n]=e.ondel?!0:!1,this.options.onnew?this.$nav.find("#new-tab").before(r):this.$nav.append(r),i.append(e.$el),this.$content.append(i),this.size()==1&&(r.addClass("active"),i.addClass("active"),this.first_tab=n),this.options.max&&this.size()>=this.options.max&&this.$el.find("#new-tab").hide();if(e.ondel){var s=r.find("#delete");s.tooltip({title:"Delete this tab",placement:"bottom",container:t.$el}),s.on("click",function(){return s.tooltip("destroy"),t.$el.find(".tooltip").remove(),e.ondel(),!1})}r.on("click",function(r){r.preventDefault(),e.onclick?e.onclick():t.show(n)}),this.current_id||(this.current_id=n)},del:function(e){this.$el.find("#tab-"+e).remove(),this.$el.find("#"+e).remove(),this.first_tab==e&&(this.first_tab=null),this.first_tab!=null&&this.show(this.first_tab),this.list[e]&&delete this.list[e],this.size()<this.options.max&&this.$el.find("#new-tab").show()},delRemovable:function(){for(var e in this.list)this.del(e)},show:function(e){this.$el.fadeIn("fast"),this.visible=!0,e&&(this.$el.find("#tab-"+this.current_id).removeClass("active"),this.$el.find("#"+this.current_id).removeClass("active"),this.$el.find("#tab-"+e).addClass("active"),this.$el.find("#"+e).addClass("active"),this.current_id=e),this.options.onchange&&this.options.onchange(e)},hide:function(){this.$el.fadeOut("fast"),this.visible=!1},hideOperation:function(e){this.$nav.find("#"+e).hide()},showOperation:function(e){this.$nav.find("#"+e).show()},setOperation:function(e,t){var n=this.$nav.find("#"+e);n.off("click"),n.on("click",t)},title:function(e,t){var n=this.$el.find("#tab-title-text-"+e);return t&&n.html(t),n.html()},retitle:function(e){var t=0;for(var n in this.list)this.title(n,++t+": "+e)},_template:function(e){return'<div class="ui-tabs tabbable tabs-left"><ul id="tab-navigation" class="tab-navigation nav nav-tabs"><div class="operations" style="float: right; margin-bottom: 4px;"></div></ul><div id="tab-content" class="tab-content"/></div>'},_template_tab_new:function(e){return'<li id="new-tab"><a href="javascript:void(0);"><i class="ui-tabs-add fa fa-plus-circle"/>'+e.title_new+"</a>"+"</li>"},_template_tab:function(e){var t='<li id="tab-'+e.id+'" class="tab-element">'+'<a id="tab-title-link-'+e.id+'" title="" href="#'+e.id+'" data-original-title="">'+'<span id="tab-title-text-'+e.id+'" class="tab-title-text">'+e.title+"</span>";return e.ondel&&(t+='<i id="delete" class="ui-tabs-delete fa fa-minus-circle"/>'),t+="</a></li>",t},_template_tab_content:function(e){return'<div id="'+e.id+'" class="tab-pane"/>'}});return{View:t}}),define("mvc/ui/ui-table",["utils/utils"],function(e){var t=Backbone.View.extend({row:null,row_count:0,optionsDefault:{content:"No content available.",onchange:null,ondblclick:null,onconfirm:null,cls:"ui-table",cls_tr:""},events:{click:"_onclick",dblclick:"_ondblclick"},initialize:function(t){this.options=e.merge(t,this.optionsDefault);var n=$(this._template(this.options));this.$thead=n.find("thead"),this.$tbody=n.find("tbody"),this.$tmessage=n.find("tmessage"),this.setElement(n),this.row=this._row()},addHeader:function(e){var t=$("<th></th>");t.append(e),this.row.append(t)},appendHeader:function(){this.$thead.append(this.row),this.row=$("<tr></tr>")},add:function(e,t,n){var r=$("<td></td>");t&&r.css("width",t),n&&r.css("text-align",n),r.append(e),this.row.append(r)},append:function(e,t){this._commit(e,t,!1)},prepend:function(e,t){this._commit(e,t,!0)},get:function(e){return this.$el.find("#"+e)},del:function(e){var t=this.$tbody.find("#"+e);t.length>0&&(t.remove(),this.row_count--,this._refresh())},delAll:function(){this.$tbody.empty(),this.row_count=0,this._refresh()},value:function(e){this.before=this.$tbody.find(".current").attr("id"),e!==undefined&&(this.$tbody.find("tr").removeClass("current"),e&&this.$tbody.find("#"+e).addClass("current"));var t=this.$tbody.find(".current").attr("id");return t===undefined?null:(t!=this.before&&this.options.onchange&&this.options.onchange(e),t)},size:function(){return this.$tbody.find("tr").length},_commit:function(e,t,n){this.del(e),this.row.attr("id",e),n?this.$tbody.prepend(this.row):this.$tbody.append(this.row),t&&(this.row.hide(),this.row.fadeIn()),this.row=this._row(),this.row_count++,this._refresh()},_row:function(){return $('<tr class="'+this.options.cls_tr+'"></tr>')},_onclick:function(e){var t=this.value(),n=$(e.target).closest("tr").attr("id");n!=""&&n&&t!=n&&(this.options.onconfirm?this.options.onconfirm(n):this.value(n))},_ondblclick:function(e){var t=this.value();t&&this.options.ondblclick&&this.options.ondblclick(t)},_refresh:function(){this.row_count==0?this.$tmessage.show():this.$tmessage.hide()},_template:function(e){return'<div><table class="'+e.cls+'">'+"<thead></thead>"+"<tbody></tbody>"+"</table>"+"<tmessage>"+e.content+"</tmessage>"+"<div>"}});return{View:t}}),define("plugin/views/group",["mvc/ui/ui-table","mvc/ui/ui-misc","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(r,i){this.app=r;var s=this;this.chart=this.app.chart,this.group=i.group,this.group_key=new t.Input({placeholder:"Data label",onchange:function(e){s.group.set("key",e)}}),this.table=new e.View({content:"No data column."});var o=$("<div/>");o.append(n.wrap((new t.Label({title:"Provide a label:"})).$el)),o.append(n.wrap(this.group_key.$el)),o.append(n.wrap((new t.Label({title:"Select columns:"})).$el)),o.append(n.wrap(this.table.$el)),this.setElement(o);var s=this;this.chart.on("change:dataset_id",function(){s._refreshTable()}),this.chart.on("change:type",function(){s._refreshTable()}),this.group.on("change:key",function(){s._refreshGroupKey()}),this.group.on("change",function(){s._refreshGroup()}),this._refreshTable(),this._refreshGroupKey(),this._refreshGroup()},_refreshTable:function(){var e=this.chart.get("dataset_id"),n=this.chart.get("type");if(!e||!n)return;var r=this,i=this.chart.definition;this.table.delAll();var s={};for(var o in i.columns){var u=i.columns[o];if(!u){console.debug("Group::_refreshTable() - Skipping column definition.");continue}var a=new t.Select.View({id:"select_"+o,wait:!0}),f=u.title;u.is_unique&&(f+=" (all data labels)"),this.table.add(f,"25%"),this.table.add(a.$el),this.table.append(o),s[o]=a}this.chart.state("wait","Loading metadata...");var l=this.app.deferred.register(),c={id:e,success:function(e){for(var t in s)r._addRow(t,e,s,i.columns[t]);r.chart.state("ok","Metadata initialized..."),r.app.deferred.done(l)}};this.app.datasets.request(c)},_addRow:function(e,t,n,r){var i=this,s=r.is_label,o=r.is_auto,u=r.is_numeric,a=r.is_unique,f=r.is_zero,l=[],c=n[e];o&&l.push({label:"Column: Row Number",value:"auto"}),f&&l.push({label:"Column: None",value:"zero"});var h=t.metadata_column_types;for(var p in h){var d=!1;h[p]=="int"||h[p]=="float"?d=u:d=s,d&&l.push({label:"Column: "+(parseInt(p)+1)+" ["+h[p]+"]",value:p})}c.update(l),a&&this.chart.groups.first()&&this.group.set(e,this.chart.groups.first().get(e));if(!c.exists(this.group.get(e))){var v=c.first();console.debug('Group()::_addRow() - Switching model value from "'+this.group.get(e)+'" to "'+v+'".'),this.group.set(e,v)}c.value(this.group.get(e)),this.group.off("change:"+e),this.group.on("change:"+e,function(){c.value(i.group.get(e))}),c.setOnChange(function(t){a?i.chart.groups.each(function(n){n.set(e,t)}):i.group.set(e,t),i.chart.set("modified",!0)}),c.show()},_refreshGroup:function(){this.group.set("date",n.time())},_refreshGroupKey:function(){var e=this.group.get("key");e===undefined&&(e=""),this.group_key.value(e)}})}),define("plugin/library/ui-table-form",["mvc/ui/ui-table","mvc/ui/ui-misc","utils/utils"],function(e,t,n){var r=Backbone.View.extend({optionsDefault:{title:"",content:"",mode:""},list:[],initialize:function(r,i){this.app=r,this.options=n.merge(i,this.optionsDefault),this.table_title=new t.Label({title:this.options.title}),this.table=new e.View({content:this.options.content});var s=$('<div class="ui-table-form"/>');this.options.title&&s.append(n.wrap(this.table_title.$el)),s.append(n.wrap(this.table.$el)),this.setElement(s)},title:function(e){this.table_title.title(e)},update:function(e,t){this.table.delAll(),this.list=[];for(var n in e)this._add(e[n].id||n,e[n],t);for(var n in this.list)this.list[n].trigger("change")},_add:function(e,n,r){var i=this,s=null,o=n.type;switch(o){case"text":s=new t.Input({id:"field-"+e,placeholder:n.placeholder,value:r.get(e),onchange:function(t){r.set(e,t)}});break;case"radiobutton":s=new t.RadioButton.View({id:"field-"+e,data:n.data,value:r.get(e),onchange:function(t){r.set(e,t);var s=_.findWhere(n.data,{value:t});if(s&&s.operations){var o=s.operations;for(var u in o.show){var a=o.show[u];i.table.get(a).show()}for(var u in o.hide){var a=o.hide[u];i.table.get(a).hide()}}}});break;case"select":s=new t.Select.View({id:"field-"+e,data:n.data,value:r.get(e),onchange:function(t){r.set(e,t);var s=_.findWhere(n.data,{value:t});if(s&&s.operations){var o=s.operations;for(var u in o.show){var a=o.show[u];i.table.get(a).show()}for(var u in o.hide){var a=o.hide[u];i.table.get(a).hide()}}}});break;case"dataset":s=new t.Select.View({id:"field-"+e,onchange:function(t){r.set(e,t)}}),i.app.datasets.on("all",function(){var t=[];i.app.datasets.each(function(e){e.get("datatype_id")==n.data&&t.push({value:e.get("id"),label:e.get("name")})}),s.update(t),r.get(e)||r.set(e,s.first()),s.value(r.get(e))}),i.app.datasets.trigger("all.datasets");break;case"textarea":s=new t.Textarea({id:"field-"+e,onchange:function(){r.set(e,s.value())}});break;case"separator":s=$("<div/>");break;default:s=new t.Input({id:"field-"+e,placeholder:n.placeholder,type:n.type,onchange:function(){r.set(e,s.value())}})}if(o!="separator"){r.get(e)||r.set(e,n.init),s.value(r.get(e)),this.list[e]=s;var u=$("<div/>");u.append(s.$el),n.info&&u.append('<div class="ui-table-form-info">'+n.info+"</div>"),this.options.style=="bold"?(this.table.add((new t.Label({title:n.title,cls:"form-label"})).$el),this.table.add(u)):(this.table.add('<span class="ui-table-form-title">'+n.title+"</span>","25%"),this.table.add(u))}else this.table.add('<div class="ui-table-form-separator">'+n.title+":<div/>"),this.table.add($("<div/>"));this.table.append(e),n.hide&&this.table.get(e).hide()}});return{View:r}}),define("plugin/views/settings",["mvc/ui/ui-misc","plugin/library/ui-table-form","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(e,n){this.app=e;var r=this;this.chart=this.app.chart,this.form=new t.View(e,{title:"Configuration",content:"This chart type does not provide any options."}),this.setElement(this.form.$el);var r=this;this.chart.on("change",function(){r._refresh()})},_refresh:function(){var e=this.chart.definition;if(!e)return;this.form.title(e.category+" - "+e.title+":"),this.form.update(e.settings,this.chart.settings)}})}),define("plugin/views/types",["utils/utils","mvc/ui/ui-misc"],function(e,t){return Backbone.View.extend({optionsDefault:{onchange:null,ondblclick:null},events:{click:"_onclick",dblclick:"_ondblclick"},initialize:function(n,r){var i=this;this.app=n,this.options=e.merge(r,this.optionsDefault);var s=$('<div class="charts-grid"/>');s.append(e.wrap((new t.Label({title:"How many data points would you like to analyze?"})).$el)),this.library=new t.RadioButton.View({data:[{label:"Few (<500)",value:"small"},{label:"Some (<10k)",value:"medium"},{label:"Many (>10k)",value:"large"}],onchange:function(e){i._filter(e)}}),s.append(e.wrap(this.library.$el)),this.setElement(s),this._render(),this.library.value("small"),this.library.trigger("change")},value:function(e){var t=this.$el.find(".current").attr("id");e!==undefined&&(this.$el.find(".current").removeClass("current"),this.$el.find("#"+e).addClass("current"));var n=this.$el.find(".current").attr("id");return n===undefined?null:(n!=t&&this.options.onchange&&this.options.onchange(e),n)},_filter:function(e){this.$el.find(".header").hide();var t=this.app.types.attributes;for(var n in t){var r=t[n],i=this.$el.find("#"+n),s=this.$el.find("#types-header-"+this.categories_index[r.category]),o=r.keywords||"";o.indexOf(e)>=0?(i.show(),s.show()):i.hide()}},_render:function(){this.categories={},this.categories_index={};var e=0,t=this.app.types.attributes;for(var n in t){var r=t[n],i=r.category;this.categories[i]||(this.categories[i]={},this.categories_index[i]=e++),this.categories[i][n]=r}for(var i in this.categories){var s=$('<div style="clear: both;"/>');s.append(this._template_header({id:"types-header-"+this.categories_index[i],title:i}));for(var n in this.categories[i]){var r=this.categories[i][n],o=r.title+" ("+r.library+")";r.zoomable&&(o='<span class="fa fa-search-plus"/>'+o),s.append(this._template_item({id:n,title:o,url:config.app_root+"charts/"+this.app.chartPath(n)+"/logo.png"}))}this.$el.append(s)}},_onclick:function(e){var t=this.value(),n=$(e.target).closest(".item").attr("id");n!=""&&n&&t!=n&&this.value(n)},_ondblclick:function(e){var t=this.value();t&&this.options.ondblclick&&this.options.ondblclick(t)},_template_header:function(e){return'<div id="'+e.id+'" class="header">'+"• "+e.title+"<div>"},_template_item:function(e){return'<div id="'+e.id+'" class="item">'+'<img class="image" src="'+e.url+'">'+'<div class="title">'+e.title+"</div>"+"<div>"}})}),define("plugin/views/editor",["mvc/ui/ui-tabs","mvc/ui/ui-misc","mvc/ui/ui-portlet","utils/utils","plugin/models/chart","plugin/models/group","plugin/views/group","plugin/views/settings","plugin/views/types"],function(e,t,n,r,i,s,o,u,a){return Backbone.View.extend({initialize:function(i,s){var o=this;this.app=i,this.chart=this.app.chart,this.message=new t.Message,this.portlet=new n.View({icon:"fa-bar-chart-o",title:"Editor",operations:{save:new t.ButtonIcon({icon:"fa-save",tooltip:"Draw Chart",title:"Draw",onclick:function(){o._saveChart()}}),back:new t.ButtonIcon({icon:"fa-caret-left",tooltip:"Return to Viewer",title:"Cancel",onclick:function(){o.app.go("viewer"),o.app.storage.load()}})}}),this.types=new a(i,{onchange:function(e){var t=o.app.types.get(e);t||console.debug("FAILED - Editor::onchange() - Chart type not supported."),o.chart.definition=t,o.chart.settings.clear(),o.chart.set({type:e}),o.chart.set("modified",!0),console.debug("Editor::onchange() - Switched chart type.")},ondblclick:function(e){o._saveChart()}}),this.tabs=new e.View({title_new:"Add Data",onnew:function(){var e=o._addGroupModel();o.tabs.show(e.id)}}),this.title=new t.Input({placeholder:"Chart title",onchange:function(){o.chart.set("title",o.title.value())}});var f=$("<div/>");f.append(r.wrap((new t.Label({title:"Provide a chart title:"})).$el)),f.append(r.wrap(this.title.$el)),f.append(r.wrap(this.types.$el)),this.tabs.add({id:"main",title:"Start",$el:f}),this.settings=new u(this.app),this.tabs.add({id:"settings",title:"Configuration",$el:this.settings.$el}),this.portlet.append(this.message.$el),this.portlet.append(this.tabs.$el),this.setElement(this.portlet.$el),this.tabs.hideOperation("back");var o=this;this.chart.on("change:title",function(e){o._refreshTitle()}),this.chart.on("change:type",function(e){o.types.value(e.get("type"))}),this.chart.on("reset",function(e){o._resetChart()}),this.app.chart.on("redraw",function(e){o.portlet.showOperation("back")}),this.app.chart.groups.on("add",function(e){o._addGroup(e)}),this.app.chart.groups.on("remove",function(e){o._removeGroup(e)}),this.app.chart.groups.on("reset",function(e){o._removeAllGroups()}),this.app.chart.groups.on("change:key",function(e){o._refreshGroupKey()}),this._resetChart()},show:function(){this.$el.show()},hide:function(){this.$el.hide()},_refreshTitle:function(){var e=this.chart.get("title");this.portlet.title(e),this.title.value(e)},_refreshGroupKey:function(){var e=this,t=0;this.chart.groups.each(function(n){var r=n.get("key","");r==""&&(r="Data label"),e.tabs.title(n.id,++t+": "+r)})},_addGroupModel:function(){var e=new s({id:r.uuid()});return this.chart.groups.add(e),e},_addGroup:function(e){var t=this,n=new o(this.app,{group:e});this.tabs.add({id:e.id,$el:n.$el,ondel:function(){t.chart.groups.remove(e.id)}}),this._refreshGroupKey(),this.chart.set("modified",!0)},_removeGroup:function(e){this.tabs.del(e.id),this._refreshGroupKey(),this.chart.set("modified",!0)},_removeAllGroups:function(e){this.tabs.delRemovable()},_resetChart:function(){this.chart.set("id",r.uuid()),this.chart.set("type","nvd3_bar"),this.chart.set("dataset_id",this.app.options.config.dataset_id),this.chart.set("title","New Chart"),this.portlet.hideOperation("back")},_saveChart:function(){this.chart.set({type:this.types.value(),title:this.title.value(),date:r.time()});if(this.chart.groups.length==0){this.message.update({message:"Please select data columns before drawing the chart."});var e=this._addGroupModel();this.tabs.show(e.id);return}var t=this,n=!0,i=this.chart.definition;this.chart.groups.each(function(e){if(!n)return;for(var r in i.columns)if(e.attributes[r]=="null"){t.message.update({status:"danger",message:"This chart type requires column types not found in your tabular file."}),t.tabs.show(e.id),n=!1;return}});if(!n)return;this.app.go("viewer");var t=this;this.app.deferred.execute(function(){t.app.storage.save(),t.chart.trigger("redraw")})}})}),define("plugin/models/config",[],function(){return Backbone.Model.extend({defaults:{query_limit:1e4,query_timeout:100}})}),define("plugin/charts/forms/default",[],function(){return{title:"",category:"",library:"",tag:"",keywords:"",settings:{separator_x:{title:"X axis",type:"separator"},x_axis_label:{title:"Axis label",info:"Provide a label for the axis.",type:"text",init:"X-axis",placeholder:"Axis label"},x_axis_type:{title:"Axis value type",info:"Select the value type of the axis.",type:"select",init:"auto",data:[{label:"-- Do not show values --",value:"hide",operations:{hide:["x_axis_precision"]}},{label:"Auto",value:"auto",operations:{hide:["x_axis_precision"]}},{label:"Float",value:"f",operations:{show:["x_axis_precision"]}},{label:"Exponent",value:"e",operations:{show:["x_axis_precision"]}},{label:"Integer",value:"d",operations:{hide:["x_axis_precision"]}},{label:"Percentage",value:"p",operations:{show:["x_axis_precision"]}},{label:"SI-prefix",value:"s",operations:{hide:["x_axis_precision"]}}]},x_axis_precision:{title:"Axis tick format",info:"Select the tick format for the axis.",type:"select",init:"1",data:[{label:"0.00001",value:"5"},{label:"0.0001",value:"4"},{label:"0.001",value:"3"},{label:"0.01",value:"2"},{label:"0.1",value:"1"},{label:"1",value:"0"}]},separator_y:{title:"Y axis",type:"separator"},y_axis_label:{title:"Axis label",info:"Provide a label for the axis.",type:"text",init:"Y-axis",placeholder:"Axis label"},y_axis_type:{title:"Axis value type",info:"Select the value type of the axis.",type:"select",init:"auto",data:[{label:"-- Do not show values --",value:"hide",operations:{hide:["y_axis_precision"]}},{label:"Auto",value:"auto",operations:{hide:["y_axis_precision"]}},{label:"Float",value:"f",operations:{show:["y_axis_precision"]}},{label:"Exponent",value:"e",operations:{show:["y_axis_precision"]}},{label:"Integer",value:"d",operations:{hide:["y_axis_precision"]}},{label:"Percentage",value:"p",operations:{show:["y_axis_precision"]}},{label:"SI-prefix",value:"s",operations:{hide:["y_axis_precision"]}}]},y_axis_precision:{title:"Axis tick format",info:"Select the tick format for the axis.",type:"select",init:"1",data:[{label:"0.00001",value:"5"},{label:"0.0001",value:"4"},{label:"0.001",value:"3"},{label:"0.01",value:"2"},{label:"0.1",value:"1"},{label:"1",value:"0"}]},separator_legend:{title:"Others",type:"separator"},show_legend:{title:"Show legend",info:"Would you like to add a 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h=D.yScale().invert(i.mouseY),p=Math.abs(D.yScale().domain()[0]-D.yScale().domain()[1]),d=.03*p,m=e.nearestValueIndex(c.map(function(e){return e.value}),h,d);m!==null&&(c[m].highlight=!0)}var g=n.tickFormat()(D.x()(s,f),f);o.tooltip.position({left:l+u.left,top:i.mouseY+u.top}).chartContainer(A.parentNode).enabled(v).valueFormatter(function(e,t){return r.tickFormat()(e)}).data({value:g,series:c})(),o.renderGuideLine(l)}),o.dispatch.on("elementMouseout",function(e){k.tooltipHide(),t.clearHighlights()}),k.on("tooltipShow",function(e){v&&_(e,A.parentNode)}),k.on("changeState",function(e){typeof e.disabled!="undefined"&&(b.forEach(function(t,n){t.disabled=e.disabled[n]}),x.disabled=e.disabled),typeof e.index!="undefined"&&(M.i=e.index,M.x=O(M.i),x.index=e.index,tt.data([M])),typeof e.rescaleY!="undefined"&&(y=e.rescaleY),D.update()})}),D}function P(e,n){return n.map(function(n,r){if(!n.values)return n;var i=n.values[e];if(i==null)return n;var s=t.y()(i,e);return 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E=d3.select(this),T=this,N=(u||parseInt(E.style("width"))||960)-s.left-s.right,C=(a||parseInt(E.style("height"))||400)-s.top-s.bottom;x.update=function(){E.call(x)},x.container=this,g.disabled=d.map(function(e){return!!e.disabled});if(!y){var k;y={};for(k in g)g[k]instanceof Array?y[k]=g[k].slice(0):y[k]=g[k]}if(!d||!d.length||!d.filter(function(e){return e.values.length}).length){var L=E.selectAll(".nv-noData").data([b]);return L.enter().append("text").attr("class","nvd3 nv-noData").attr("dy","-.7em").style("text-anchor","middle"),L.attr("x",s.left+N/2).attr("y",s.top+C/2).text(function(e){return e}),x}E.selectAll(".nv-noData").remove(),v=t.xScale(),m=t.yScale();var A=E.selectAll("g.nv-wrap.nv-historicalBarChart").data([d]),O=A.enter().append("g").attr("class","nvd3 nv-wrap nv-historicalBarChart").append("g"),M=A.select("g");O.append("g").attr("class","nv-x nv-axis"),O.append("g").attr("class","nv-y 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t=e.models.line(),n=e.models.line(),r=e.models.axis(),i=e.models.axis(),s=e.models.axis(),o=e.models.axis(),u=e.models.legend(),a=d3.svg.brush(),f={top:30,right:30,bottom:30,left:60},l={top:0,right:30,bottom:20,left:60},c=e.utils.defaultColor(),h=null,p=null,d=100,v,m,g,y,b=!0,w=null,E=!0,S=function(e,t,n,r,i){return"<h3>"+e+"</h3>"+"<p>"+n+" at "+t+"</p>"},x="No Data Available.",T=d3.dispatch("tooltipShow","tooltipHide","brush"),N=0;t.clipEdge(!0),n.interactive(!1),r.orient("bottom").tickPadding(5),i.orient("left"),s.orient("bottom").tickPadding(5),o.orient("left");var C=function(n,s){var o=n.pos[0]+(s.offsetLeft||0),u=n.pos[1]+(s.offsetTop||0),a=r.tickFormat()(t.x()(n.point,n.pointIndex)),f=i.tickFormat()(t.y()(n.point,n.pointIndex)),l=S(n.series.key,a,f,n,k);e.tooltip.show([o,u],l,null,null,s)};return t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+f.left,e.pos[1]+f.top],T.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){T.tooltipHide(e)}),T.on("tooltipHide",function(){E&&e.tooltip.cleanup()}),k.dispatch=T,k.legend=u,k.lines=t,k.lines2=n,k.xAxis=r,k.yAxis=i,k.x2Axis=s,k.y2Axis=o,d3.rebind(k,t,"defined","isArea","size","xDomain","yDomain","xRange","yRange","forceX","forceY","interactive","clipEdge","clipVoronoi","id"),k.options=e.utils.optionsFunc.bind(k),k.x=function(e){return arguments.length?(t.x(e),n.x(e),k):t.x},k.y=function(e){return arguments.length?(t.y(e),n.y(e),k):t.y},k.margin=function(e){return arguments.length?(f.top=typeof e.top!="undefined"?e.top:f.top,f.right=typeof e.right!="undefined"?e.right:f.right,f.bottom=typeof e.bottom!="undefined"?e.bottom:f.bottom,f.left=typeof e.left!="undefined"?e.left:f.left,k):f},k.margin2=function(e){return arguments.length?(l=e,k):l},k.width=function(e){return arguments.length?(h=e,k):h},k.height=function(e){return arguments.length?(p=e,k):p},k.height2=function(e){return arguments.length?(d=e,k):d},k.color=function(t){return arguments.length?(c=e.utils.getColor(t),u.color(c),k):c},k.showLegend=function(e){return arguments.length?(b=e,k):b},k.tooltips=function(e){return arguments.length?(E=e,k):E},k.tooltipContent=function(e){return arguments.length?(S=e,k):S},k.interpolate=function(e){return arguments.length?(t.interpolate(e),n.interpolate(e),k):t.interpolate()},k.noData=function(e){return arguments.length?(x=e,k):x},k.xTickFormat=function(e){return arguments.length?(r.tickFormat(e),s.tickFormat(e),k):r.tickFormat()},k.yTickFormat=function(e){return arguments.length?(i.tickFormat(e),o.tickFormat(e),k):i.tickFormat()},k.brushExtent=function(e){return arguments.length?(w=e,k):w},k.transitionDuration=function(e){return arguments.length?(N=e,k):N},k},e.models.linePlusBarWithFocusChart=function(){function B(e){return e.each(function(e){function 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t.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+o.left,e.pos[1]+o.top],S.tooltipShow(e)}),t.dispatch.on("elementMouseout.tooltip",function(e){S.tooltipHide(e)}),S.on("tooltipHide",function(){v&&e.tooltip.cleanup()}),C.dispatch=S,C.multibar=t,C.legend=i,C.xAxis=n,C.yAxis=r,d3.rebind(C,t,"x","y","xDomain","yDomain","xRange","yRange","forceX","forceY","clipEdge","id","delay","showValues","showBarLabels","valueFormat","stacked","barColor"),C.options=e.utils.optionsFunc.bind(C),C.margin=function(e){return arguments.length?(o.top=typeof e.top!="undefined"?e.top:o.top,o.right=typeof e.right!="undefined"?e.right:o.right,o.bottom=typeof e.bottom!="undefined"?e.bottom:o.bottom,o.left=typeof e.left!="undefined"?e.left:o.left,C):o},C.width=function(e){return arguments.length?(u=e,C):u},C.height=function(e){return arguments.length?(a=e,C):a},C.color=function(t){return arguments.length?(f=e.utils.getColor(t),i.color(f),C):f},C.showControls=function(e){return arguments.length?(l=e,C):l},C.showLegend=function(e){return arguments.length?(c=e,C):c},C.showXAxis=function(e){return arguments.length?(h=e,C):h},C.showYAxis=function(e){return arguments.length?(p=e,C):p},C.tooltip=function(e){return arguments.length?(m=e,C):m},C.tooltips=function(e){return arguments.length?(v=e,C):v},C.tooltipContent=function(e){return arguments.length?(m=e,C):m},C.state=function(e){return arguments.length?(b=e,C):b},C.defaultState=function(e){return arguments.length?(w=e,C):w},C.noData=function(e){return arguments.length?(E=e,C):E},C.transitionDuration=function(e){return arguments.length?(T=e,C):T},C},e.models.multiChart=function(){function C(e){return e.each(function(e){var u=d3.select(this),f=this;C.update=function(){u.call(C)},C.container=this;var 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o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),f=i.pos[0]+(s.offsetLeft||0),l=p.range()[0]+a.top+(s.offsetTop||0),c=h.range()[0]+a.left+(s.offsetLeft||0),d=i.pos[1]+(s.offsetTop||0),v=n.tickFormat()(t.x()(i.point,i.pointIndex)),m=r.tickFormat()(t.y()(i.point,i.pointIndex));T!=null&&e.tooltip.show([f,l],T(i.series.key,v,m,i,B),"n",1,s,"x-nvtooltip"),N!=null&&e.tooltip.show([c,d],N(i.series.key,v,m,i,B),"e",1,s,"y-nvtooltip"),C!=null&&e.tooltip.show([o,u],C(i.series.key,v,m,i.point.tooltip,i,B),i.value<0?"n":"s",null,s)},H=[{key:"Magnify",disabled:!0}];return t.dispatch.on("elementMouseout.tooltip",function(e){A.tooltipHide(e),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-distx-"+e.pointIndex).attr("y1",0),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" 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e!==undefined&&(this.$el.find("input").prop("checked",!1),this.$el.find("label").removeClass("active"),this.$el.find('[value="'+e+'"]').prop("checked",!0).closest("label").addClass("active")),this._getValue()},_templateOption:function(e){var t='<label class="btn btn-default">';return e.icon&&(t+='<i class="fa '+e.icon+'"/>'),t+='<input type="radio" name="'+this.options.id+'" value="'+e.value+'">'+e.label+"</label>",t},_template:function(){return'<div class="btn-group ui-radiobutton" data-toggle="buttons"/>'}}),{Base:t,Radio:n,RadioButton:i,Checkbox:r}}),define("mvc/ui/ui-drilldown",["utils/utils","mvc/ui/ui-options"],function(e,t){var n=t.Base.extend({initialize:function(e){this.display=e.display||"checkbox",e.multiple=this.display=="checkbox",t.Base.prototype.initialize.call(this,e)},_templateOption:function(e,t,n){return'<div><input name="'+this.options.id+'" class="ui-option" type="'+this.display+'" value="'+t+'">'+e+"<div/>"},_templateOptions:function(e){function n(e,t){function n(n){n?(t.fadeIn("fast"),e.removeClass("toggle-expand"),e.addClass("toggle"),e.is_expanded=!0):(t.hide(),e.removeClass("toggle"),e.addClass("toggle-expand"),e.is_expanded=!1)}e.on("click",function(){n(!e.is_expanded)})}function r(e,s){for(i in s){var o=s[i],u=o.options.length>0,a=$("<div/>");if(u){var f=$('<span class="ui-drilldown-button form-toggle icon-button toggle-expand" style="position: relative; top: 2px;"/>'),l=$("<div/>");l.append(f),l.append(t._templateOption(o.name,o.value)),a.append(l);var c=$('<div style="display: none; margin-left: 25px;"/>');r(c,o.options),a.append(c),n(f,c)}else a.append(t._templateOption(o.name,o.value));e.append(a)}}var t=this,s=$("<div/>");return r(s,e),s},_template:function(e){return'<div class="ui-options drilldown-container" id="'+e.id+'"/>'}});return{View:n}}),define("mvc/ui/ui-button-menu",["utils/utils"],function(e){return Backbone.View.extend({optionsDefault:{id:"",title:"",floating:"right",icon:null,onclick:null,cls:"ui-button-icon ui-button-menu",tooltip:"",target:"",href:"",onunload:null,visible:!0,tag:""},$menu:null,initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement($(this._template(this.options)));var n=$(this.el).find(".root"),r=this;n.on("click",function(e){$(".tooltip").hide(),e.preventDefault(),r.options.onclick&&r.options.onclick()}),this.options.visible||this.hide(),n.tooltip({title:t.tooltip,placement:"bottom"})},show:function(){$(this.el).show()},hide:function(){$(this.el).hide()},addMenu:function(t){var n={title:"",target:"",href:"",onclick:null,divider:!1,icon:null,cls:"button-menu btn-group"};n=e.merge(t,n),this.$menu||($(this.el).append(this._templateMenu()),this.$menu=$(this.el).find(".menu"));var r=$(this._templateMenuItem(n));r.on("click",function(e){e.preventDefault(),n.onclick&&n.onclick()}),this.$menu.append(r),n.divider&&this.$menu.append($(this._templateDivider()))},_templateMenuItem:function(e){var t='<li><a class="dropdown-item" href="'+e.href+'" target="'+e.target+'">';return e.icon&&(t+='<i class="fa '+e.icon+'"></i>'),t+=" "+e.title+"</a>"+"</li>",t},_templateMenu:function(){return'<ul class="menu dropdown-menu pull-right" role="menu"></ul>'},_templateDivider:function(){return'<li class="divider"></li>'},_template:function(e){var t="",n="";e.title?t="width: auto;":n="margin: 0px;";var r='<div id="'+e.id+'" style="float: '+e.floating+"; "+t+'" class="dropdown '+e.cls+'">'+'<div class="root button dropdown-toggle" data-toggle="dropdown" style="'+n+'">'+'<i class="icon fa '+e.icon+'"/>';return e.title&&(r+=' <span class="title">'+e.title+"</span>"),r+="</div></div>",r}})}),define("mvc/ui/ui-misc",["utils/utils","mvc/ui/ui-select-default","mvc/ui/ui-slider","mvc/ui/ui-options","mvc/ui/ui-drilldown","mvc/ui/ui-button-menu","mvc/ui/ui-modal"],function(e,t,n,r,i,s,o){var u=Backbone.View.extend({optionsDefault:{url:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options))},_template:function(e){return'<img class="ui-image '+e.cls+'" src="'+e.url+'"/>'}}),a=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options))},title:function(e){this.$el.html(e)},_template:function(e){return'<label class="ui-label '+e.cls+'">'+e.title+"</label>"},value:function(){return options.title}}),f=Backbone.View.extend({optionsDefault:{floating:"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){return'<div><span class="fa '+e.icon+'" class="ui-icon"/> '+e.title+"</div>"}}),l=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button btn btn-default",icon:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",function(){$(".tooltip").hide(),t.onclick&&t.onclick()}),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){var t='<button id="'+e.id+'" type="submit" style="float: '+e.floating+';" type="button" class="'+e.cls+'">';return e.icon&&(t+='<i class="icon fa '+e.icon+'"></i> '),t+=e.title+"</button>",t}}),c=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button-icon",icon:"",tooltip:"",onclick:null},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.$button=this.$el.find(".button");var n=this;$(this.el).on("click",function(){$(".tooltip").hide(),t.onclick&&!n.disabled&&t.onclick()}),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},disable:function(){this.$button.addClass("disabled"),this.disabled=!0},enable:function(){this.$button.removeClass("disabled"),this.disabled=!1},_template:function(e){var t="";e.title&&(t="width: auto;");var n='<div id="'+e.id+'" style="float: '+e.floating+"; "+t+'" class="'+e.cls+'">';return e.title?n+='<div class="button"><i class="icon fa '+e.icon+'"/> '+'<span class="title">'+e.title+"</span>"+"</div>":n+='<i class="icon fa '+e.icon+'"/>',n+="</div>",n}}),h=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",t.onclick)},_template:function(e){return'<div><a href="javascript:void(0)" class="ui-anchor '+e.cls+'">'+e.title+"</a></div>"}}),p=Backbone.View.extend({optionsDefault:{message:null,status:"info",persistent:!1},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement("<div></div>"),this.options.message&&this.update(this.options)},update:function(t){this.options=e.merge(t,this.optionsDefault);if(t.message!=""){this.$el.html(this._template(this.options)),this.$el.find(".alert").append(t.message),this.$el.fadeIn(),this.timeout&&window.clearTimeout(this.timeout);if(!t.persistent){var n=this;this.timeout=window.setTimeout(function(){n.$el.is(":visible")?n.$el.fadeOut():n.$el.hide()},3e3)}}else this.$el.fadeOut()},_template:function(e){return'<div class="ui-message alert alert-'+e.status+'"/>'}}),d=Backbone.View.extend({optionsDefault:{onclick:null,searchword:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options));var n=this;this.options.onclick&&this.$el.on("submit",function(e){var t=n.$el.find("#search");n.options.onclick(t.val())})},_template:function(e){return'<div class="ui-search"><form onsubmit="return false;"><input id="search" class="form-control input-sm" type="text" name="search" placeholder="Search..." value="'+e.searchword+'">'+'<button type="submit" class="btn search-btn">'+'<i class="fa fa-search"></i>'+"</button>"+"</form>"+"</div>"}}),v=Backbone.View.extend({optionsDefault:{type:"text",placeholder:"",disabled:!1,visible:!0,cls:"",area:!1},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.options.value!==undefined&&this.value(this.options.value),this.options.disabled&&this.$el.prop("disabled",!0),this.options.visible||this.$el.hide();var n=this;this.$el.on("input",function(){n.options.onchange&&n.options.onchange(n.$el.val())})},value:function(e){return e!==undefined&&this.$el.val(e),this.$el.val()},_template:function(e){return e.area?'<textarea id="'+e.id+'" class="ui-textarea '+e.cls+'"></textarea>':'<input id="'+e.id+'" type="'+e.type+'" value="'+e.value+'" placeholder="'+e.placeholder+'" class="ui-input '+e.cls+'">'}}),m=Backbone.View.extend({initialize:function(e){this.options=e,this.setElement(this._template(this.options)),this.options.value!==undefined&&this.value(this.options.value)},value:function(e){return e!==undefined&&this.$el.val(e),this.$el.val()},_template:function(e){return'<hidden id="'+e.id+'" value="'+e.value+'"/>'}});return{Anchor:h,Button:l,ButtonIcon:c,ButtonMenu:s,Icon:f,Image:u,Input:v,Label:a,Message:p,Modal:o,RadioButton:r.RadioButton,Checkbox:r.Checkbox,Radio:r.Radio,Searchbox:d,Select:t,Hidden:m,Slider:n,Drilldown:i}}),define("plugin/library/jobs",["utils/utils"],function(e){return Backbone.Model.extend({initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e,t,n,r,i){var s=this;e.state("wait","Requesting job results...");var o=e.get("dataset_id_job");o!=""?s._wait(e,r,i):s._submit(e,t,n,r,i)},cleanup:function(t){var n=this,r=t.get("dataset_id_job");r!=""&&(e.request({type:"PUT",url:config.root+"api/histories/none/contents/"+r,data:{deleted:!0},success:function(){n._refreshHdas()}}),t.set("dataset_id_job",""))},_submit:function(t,n,r,i,s){var o=this,u=t.id,a=t.get("type"),f=t.definition;data={tool_id:"charts",inputs:{input:{id:t.get("dataset_id"),src:"hda"},module:f.execute,columns:r,settings:n}},t.state("wait","Sending job request..."),e.request({type:"POST",url:config.root+"api/tools",data:data,success:function(e){if(!e.outputs||e.outputs.length==0)t.state("failed","Job submission failed. No response."),s&&s();else{o._refreshHdas();var n=e.outputs[0];t.state("wait","Your job has been queued. You may close the browser window. The job will run in the background."),t.set("dataset_id_job",n.id),o.app.storage.save(),o._wait(t,i,s)}},error:function(e){var n="";e&&e.message&&e.message.data&&e.message.data.input&&(n=e.message.data.input+"."),t.state("failed","This visualization requires the 'charts' tool. Please make sure it is installed. "+n),s&&s()}})},_wait:function(t,n,r){var i=this;e.request({type:"GET",url:config.root+"api/datasets/"+t.get("dataset_id_job"),data:{},success:function(e){var s=!1;switch(e.state){case"ok":t.state("wait","Job completed successfully..."),n&&n(e),s=!0;break;case"error":t.state("failed","Job has failed. Please check the history for details."),r&&r(e),s=!0;break;case"running":t.state("wait","Your job is running. You may close the browser window. The job will continue in the background.")}s||setTimeout(function(){i._wait(t,n,r)},i.app.config.get("query_timeout"))}})},_refreshHdas:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.refreshContents()}})}),define("plugin/library/datasets",["utils/utils"],function(e){return Backbone.Collection.extend({list:{},cache:{},initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(e){e.groups?this._get_blocks(e):this._get_dataset(e.id,e.success,e.error)},_get_blocks:function(e){function c(i){l._get(i,function(){var s=!1;for(var o in e.groups){destination_group=e.groups[o],source_group=i.groups[o],destination_group.values||(destination_group.values=[]),destination_group.values=destination_group.values.concat(source_group.values);if(source_group.values.length==0){s=!0;break}}if(++f<u&&!s){n&&n(parseInt(f/u*100));var l=i.start+r;i=$.extend(!0,a,{start:l}),c(i)}else t()})}var t=e.success,n=e.progress,r=this.app.config.get("query_limit"),i=e.start||0,s=i+e.query_limit||i+this.app.config.get("query_limit"),o=Math.abs(s-i);if(o<=0){console.debug("FAILED - Datasets::request() - Invalid query range.");return}var u=Math.ceil(o/r)||1,a=$.extend(!0,{},e),f=0,l=this,h=$.extend(!0,a,{start:i});this._get_dataset(e.id,function(){c(h)})},_get_dataset:function(t,n,r){var i=this.list[t];if(i){n(i);return}var s=this;e.request({type:"GET",url:config.root+"api/datasets/"+t,success:function(e){switch(e.state){case"error":r&&r(e);break;default:s.list[t]=e,n(e)}}})},_block_id:function(e,t){return e.id+"_"+e.start+"_"+e.start+this.app.config.get("query_limit")+"_"+t},_get:function(e,t){e.start=e.start||0;var n=[],r={},i=0;for(var s in e.groups){var o=e.groups[s];for(var u in o.columns){var a=o.columns[u].index,f=this._block_id(e,a);if(this.cache[f]||a==="auto"||a==="zero")continue;!r[a]&&a!==undefined&&(r[a]=i,n.push(a),i++)}}if(n.length==0){this._fill_from_cache(e),t(e);return}var l={dataset_id:e.id,start:e.start,columns:n},c=this;this._fetch(l,function(r){for(var i in r){var s=n[i],o=c._block_id(e,s);c.cache[o]=r[i]}c._fill_from_cache(e),t(e)})},_fill_from_cache:function(e){var t=e.start;console.debug("Datasets::_fill_from_cache() - Filling request from cache at "+t+".");var n=0;for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s],u=this._block_id(e,o.index),a=this.cache[u];a&&(n=Math.max(n,a.length))}}n==0&&console.debug("Datasets::_fill_from_cache() - Reached data range limit.");for(var r in e.groups){var i=e.groups[r];i.values=[];for(var f=0;f<n;f++)i.values[f]={x:parseInt(f)+t}}for(var r in e.groups){var i=e.groups[r];for(var s in i.columns){var o=i.columns[s];switch(o.index){case"auto":for(var f=0;f<n;f++){var l=i.values[f];l[s]=parseInt(f)+t}break;case"zero":for(var f=0;f<n;f++){var l=i.values[f];l[s]=0}break;default:var u=this._block_id(e,o.index),a=this.cache[u];for(var f=0;f<n;f++){var l=i.values[f],c=a[f];isNaN(c)&&!o.is_label&&(c=0),l[s]=c}}}}},_fetch:function(t,n){var r=t.start?t.start:0,i=this.app.config.get("query_limit"),s=0;t.columns&&(s=t.columns.length,console.debug("Datasets::_fetch() - Fetching "+s+" column(s) at "+r+".")),s==0&&console.debug("Datasets::_fetch() - No columns requested");var o="";for(var u in t.columns)o+=t.columns[u]+",";o=o.substring(0,o.length-1);var a=this;e.request({type:"GET",url:config.root+"api/datasets/"+t.dataset_id,data:{data_type:"raw_data",provider:"dataset-column",limit:i,offset:r,indeces:o},success:function(e){var t=new Array(s);for(var r=0;r<s;r++)t[r]=[];for(var r in e.data){var i=e.data[r];for(var o in i){var u=i[o];u!==undefined&&u!=2147483647&&t[o].push(u)}}console.debug("Datasets::_fetch() - Fetching complete."),n(t)}})}})}),define("plugin/models/group",[],function(){return Backbone.Model.extend({defaults:{key:"Data label",date:""},reset:function(){this.clear({silent:!0}).set(this.defaults),this.trigger("reset",this)}})}),define("plugin/models/groups",["plugin/models/group"],function(e){return Backbone.Collection.extend({model:e})}),define("plugin/models/chart",["plugin/models/groups"],function(e){return Backbone.Model.extend({defaults:{id:null,title:"",type:"",date:null,state:"",state_info:"",modified:!1,dataset_id:"",dataset_id_job:""},initialize:function(t){this.groups=new e,this.settings=new Backbone.Model},reset:function(){this.clear({silent:!0}).set(this.defaults),this.groups.reset(),this.settings.clear(),this.trigger("reset",this)},copy:function(e){var t=this;t.clear({silent:!0}).set(this.defaults),t.set(e.attributes),t.settings=e.settings.clone(),t.groups.reset(),e.groups.each(function(e){t.groups.add(e.clone())}),t.trigger("change",t)},state:function(e,t){this.set("state",e),this.set("state_info",t),this.trigger("set:state"),console.debug("Chart:state() - "+t+" ("+e+")")}})});var Visualization=Backbone.Model.extend({defaults:{config:{}},urlRoot:function(){var e="/api/visualizations";return window.galaxy_config&&galaxy_config.root?galaxy_config.root+e:e},initialize:function(e){_.isObject(e.config)&&_.isObject(this.defaults.config)&&_.defaults(e.config,this.defaults.config),this._setUpListeners()},_setUpListeners:function(){},set:function(e,t){if(e==="config"){var n=this.get("config");_.isObject(n)&&(t=_.extend(_.clone(n),t))}return Backbone.Model.prototype.set.call(this,e,t),this},toString:function(){var e=this.get("id")||"";return this.get("title")&&(e+=":"+this.get("title")),"Visualization("+e+")"}}),VisualizationCollection=Backbone.Collection.extend({model:Visualization,url:function(){return galaxy_config.root+"api/visualizations"},initialize:function(e,t){t=t||{}},set:function(e,t){var n=this;e=_.map(e,function(e){var t=n.get(e.id);if(!t)return e;var r=t.toJSON();return _.extend(r,e),r}),Backbone.Collection.prototype.set.call(this,e,t)},toString:function(){return["VisualizationCollection(",[this.historyId,this.length].join(),")"].join("")}});define("mvc/visualization/visualization-model",function(){}),define("plugin/library/storage",["utils/utils","plugin/models/chart","plugin/models/group","mvc/visualization/visualization-model"],function(e,t,n){return Backbone.Model.extend({vis:null,initialize:function(e){this.app=e,this.chart=this.app.chart,this.options=this.app.options,this.id=this.options.id,this.vis=new Visualization({type:"charts",config:{dataset_id:this.options.config.dataset_id,chart_dict:{}}}),this.id&&(this.vis.id=this.id);var t=this.options.config.chart_dict;t&&(this.vis.get("config").chart_dict=t)},save:function(){var e=this.app.chart;this.vis.get("config").chart_dict={};var t=e.get("title");t!=""&&this.vis.set("title",t);var n={attributes:e.attributes,settings:e.settings.attributes,groups:[]};e.groups.each(function(e){n.groups.push(e.attributes)}),this.vis.get("config").chart_dict=n;var r=this;this.vis.save().fail(function(e,t,n){console.error(e,t,n)}).then(function(e){e&&e.id&&(r.id=e.id)})},load:function(){var e=this.vis.get("config").chart_dict;if(!e.attributes)return!1;var t=e.attributes.type;if(!t)return console.debug("Storage::load() - Chart type not provided. Invalid format."),!1;var r=this.app.types.get(t);if(!r)return console.debug("Storage::load() - Chart type not supported. Please re-configure the chart. Resetting chart."),!1;console.debug("Storage::load() - Loading chart type "+t+"."),this.chart.definition=r,this.chart.set(e.attributes),this.chart.state("ok","Loading saved visualization..."),this.chart.settings.set(e.settings);for(var i in e.groups)this.chart.groups.add(new n(e.groups[i]));return this.chart.set("modified",!1),!0}})}),define("utils/deferred",["utils/utils"],function(e){return Backbone.Model.extend({queue:[],process:{},counter:0,initialize:function(){this.on("refresh",function(){if(this.queue.length>0&&this.ready()){var e=this.queue[0];this.queue.splice(0,1),e&&e()}})},execute:function(e){this.queue.push(e),this.trigger("refresh")},register:function(){var t=e.uuid();return this.process[t]=!0,this.counter++,console.debug("Deferred:register() - Registering "+t),t},done:function(e){this.process[e]&&(delete this.process[e],this.counter--,console.debug("Deferred:done() - Unregistering "+e),this.trigger("refresh"))},reset:function(){this.queue=[]},ready:function(){return this.counter==0}})}),define("plugin/views/viewport",["mvc/ui/ui-portlet","mvc/ui/ui-misc","utils/utils"],function(e,t,n){return Backbone.View.extend({container_list:[],canvas_list:[],initialize:function(e,t){this.app=e,this.chart=this.app.chart,this.options=n.merge(t,this.optionsDefault),this.setElement($(this._template())),this._fullscreen(this.$el,100),this._createContainer("div");var r=this;this.chart.on("redraw",function(){r._draw(r.chart)}),this.chart.on("set:state",function(){var e=r.$el.find("#info"),t=r.$el.find(".charts-viewport-container"),n=e.find("#icon");n.removeClass(),e.show(),e.find("#text").html(r.chart.get("state_info"));var i=r.chart.get("state");switch(i){case"ok":e.hide(),t.show();break;case"failed":n.addClass("icon fa fa-warning"),t.hide();break;default:n.addClass("icon fa fa-spinner fa-spin"),t.show()}})},show:function(){this.$el.show()},hide:function(){this.$el.hide()},_fullscreen:function(e,t){e.css("height",$(window).height()-t),$(window).resize(function(){e.css("height",$(window).height()-t)})},_createContainer:function(e,t){t=t||1;for(var n in this.container_list)this.container_list[n].remove();this.container_list=[],this.canvas_list=[];for(var n=0;n<t;n++){var r=$(this._templateContainer(e,parseInt(100/t)));this.$el.append(r),this.container_list[n]=r,this.canvas_list[n]=r.find(".charts-viewport-canvas").attr("id")}},_draw:function(e){var t=this,n=this.app.deferred.register(),r=e.get("type");this.chart_definition=e.definition;var i=1;e.settings.get("use_panels")==="true"&&(i=e.groups.length),this._createContainer(this.chart_definition.tag,i),e.state("wait","Please wait...");if(!this.chart_definition.execute||this.chart_definition.execute&&e.get("modified"))this.app.jobs.cleanup(e),e.set("modified",!1);var t=this;require(["plugin/charts/"+this.app.chartPath(r)+"/wrapper"],function(r){if(t.chart_definition.execute)t.app.jobs.request(e,t._defaultSettingsString(e),t._defaultRequestString(e),function(){var i=new r(t.app,{process_id:n,chart:e,request_dictionary:t._defaultRequestDictionary(e),canvas_list:t.canvas_list})},function(){this.app.deferred.done(n)});else var i=new r(t.app,{process_id:n,chart:e,request_dictionary:t._defaultRequestDictionary(e),canvas_list:t.canvas_list})})},_defaultRequestString:function(e){var t="",n=0,r=this;return e.groups.each(function(e){n++;for(var i in r.chart_definition.columns)t+=i+"_"+n+":"+(parseInt(e.get(i))+1)+", "}),t.substring(0,t.length-2)},_defaultSettingsString:function(e){var t="";for(key in e.settings.attributes)t+=key+":"+e.settings.get(key)+", ";return t.substring(0,t.length-2)},_defaultRequestDictionary:function(e){var t={groups:[]};this.chart_definition.execute?t.id=e.get("dataset_id_job"):t.id=e.get("dataset_id");var r=0,i=this;return e.groups.each(function(e){var s={};for(var o in i.chart_definition.columns){var u=i.chart_definition.columns[o];s[o]=n.merge({index:e.get(o)},u)}t.groups.push({key:++r+":"+e.get("key"),columns:s})}),t},_template:function(){return'<div class="charts-viewport"><div id="info" class="info"><span id="icon" class="icon"/><span id="text" class="text" /></div></div>'},_templateContainer:function(e,t){return'<div class="charts-viewport-container" style="width:'+t+'%;">'+'<div id="menu"/>'+"<"+e+' id="'+n.uuid()+'" class="charts-viewport-canvas">'+"</div>"}})}),define("plugin/library/screenshot",["libs/underscore"],function(e){function t(e){e.$el.find("svg").length>0?r(e):n(e)}function n(e){try{var t=e.$el.find(".jqplot-target"),n=t.jqplotToImageStr({});n&&(window.location.href=n.replace("image/png","image/octet-stream"))}catch(r){console.debug("FAILED - Screenshot::_fromCanvas() - "+r),e.error&&e.error("Please reduce your chart to a single panel and try again.")}}function r(e){var t=e.$el,n=e.url,r=e.name,s=new XMLSerializer,o=document.createElement("canvas"),u=$(o),a=t.find("svg").length,f=t.find("svg").first(),l=parseInt(f.css("height")),c=parseInt(f.css("width"));u.attr("width",c*a),u.attr("height",l),(!o.getContext||!o.getContext("2d"))&&alert("Your browser doesn't support this feature, please use a modern browser");var h=o.getContext("2d"),p=0;t.find("svg").each(function(){var e=$(this);e.attr({version:"1.1",xmlns:"http://www.w3.org/2000/svg",width:c,height:l});var t=s.serializeToString(this);h.drawSvg(t,p,0,c,l),p+=c}),window.location.href=i(o,o.getContext("2d"),"white").replace("image/png","image/octet-stream")}function i(e,t,n){var r=e.width,i=e.height,s;if(n){s=t.getImageData(0,0,r,i);var o=t.globalCompositeOperation;t.globalCompositeOperation="destination-over",t.fillStyle=n,t.fillRect(0,0,r,i)}var u=e.toDataURL("image/png");return n&&(t.clearRect(0,0,r,i),t.putImageData(s,0,0),t.globalCompositeOperation=o),u}function s(e){window.location.href="data:none/none;base64,"+btoa(a(e).string)}function o(e){for(var t in document.styleSheets){var n=document.styleSheets[t],r=n.cssRules;if(r)for(var i=0,s=r.length;i<s;i++)try{e.find(r[i].selectorText).each(function(e,t){t.style.cssText+=r[i].style.cssText})}catch(o){}}}function u(e){var t=a(e),n={filename:name||"chart",type:"application/pdf",height:t.height,width:t.width,scale:2,svg:t.string},r=$("body"),i=r.find("#viewport-form");i.length===0&&(i=$("<form>",{id:"viewport-form",method:"post",action:"http://export.highcharts.com/",display:"none"}),r.append(i)),i.empty();for(name in n){var s=$("<input/>",{type:"hidden",name:name,value:n[name]});i.append(s)}try{i.submit()}catch(o){console.log(o)}}function a(e){if(e.$el.find("svg").length==0&&e.error){e.error("No SVG found. This chart type does not support SVG/PDF export.");return}var t=e.$el,n=t.find("svg").length,r=parseInt(t.find("svg").first().css("height")),i=parseInt(t.find("svg").first().css("width")),s=new XMLSerializer,u=$("<svg/>");u.attr({version:"1.1",xmlns:"http://www.w3.org/2000/svg",width:i*n,height:r});var a="",f=0;return t.find("svg").each(function(){var e=$(this).clone();o(e);var t=$('<g transform="translate('+f+', 0)">');t.append(e.find("g").first()),u.append(t),f+=i}),{string:s.serializeToString(u[0]),height:r,width:i}}return{createPNG:t,createSVG:s,createPDF:u}}),define("plugin/views/viewer",["utils/utils","mvc/ui/ui-misc","mvc/ui/ui-portlet","plugin/views/viewport","plugin/library/screenshot"],function(e,t,n,r,i){return Backbone.View.extend({initialize:function(e,s){this.app=e,this.chart=this.app.chart,this.viewport_view=new r(e);var o=this;this.message=new t.Message;var u=new t.ButtonMenu({icon:"fa-camera",title:"Screenshot",tooltip:"Download as PNG, SVG or PDF file"});u.addMenu({id:"button-png",title:"Save as PNG",icon:"fa-file",onclick:function(){o._wait(o.chart,function(){i.createPNG({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}),u.addMenu({id:"button-svg",title:"Save as SVG",icon:"fa-file-text-o",onclick:function(){o._wait(o.chart,function(){i.createSVG({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}),u.addMenu({id:"button-png",title:"Save as PDF",icon:"fa-file-o",onclick:function(){o.app.modal.show({title:"Send chart data for PDF creation",body:"Galaxy does not provide integrated PDF export scripts. You may click 'Continue' to create the PDF by using a 3rd party service (https://export.highcharts.com)",buttons:{Cancel:function(){o.app.modal.hide()},Continue:function(){o.app.modal.hide(),o._wait(o.chart,function(){i.createPDF({$el:o.viewport_view.$el,title:o.chart.get("title"),error:function(e){o.message.update({message:e,status:"danger"})}})})}}})}}),this.portlet=new n.View({icon:"fa-bar-chart-o",title:"Viewport",scrollable:!1,operations:{edit_button:new t.ButtonIcon({icon:"fa-edit",tooltip:"Customize this chart",title:"Editor",onclick:function(){o._wait(o.chart,function(){o.app.go("editor")})}}),picture_button_menu:u}}),this.portlet.append(this.message.$el),this.portlet.append(this.viewport_view.$el),this.setElement(this.portlet.$el);var o=this;this.chart.on("change:title",function(){o._refreshTitle()})},show:function(){this.$el.show(),$(window).trigger("resize")},hide:function(){this.$el.hide()},_refreshTitle:function(){var e=this.chart.get("title");this.portlet.title(e)},_wait:function(e,t){this.app.deferred.ready()?t():this.message.update({message:"Your chart is currently being processed. Please wait and try again."})}})}),define("mvc/ui/ui-tabs",["utils/utils"],function(e){var t=Backbone.View.extend({optionsDefault:{title_new:"",operations:null,onnew:null,max:null,onchange:null},initialize:function(t){this.visible=!1,this.$nav=null,this.$content=null,this.first_tab=null,this.current_id=null,this.options=e.merge(t,this.optionsDefault);var n=$(this._template(this.options));this.$nav=n.find(".tab-navigation"),this.$content=n.find(".tab-content"),this.setElement(n),this.list={};var r=this;this.options.operations&&$.each(this.options.operations,function(e,t){t.$el.prop("id",e),r.$nav.find(".operations").append(t.$el)});if(this.options.onnew){var i=$(this._template_tab_new(this.options));this.$nav.append(i),i.tooltip({title:"Add a new tab",placement:"bottom",container:r.$el}),i.on("click",function(e){i.tooltip("hide"),r.options.onnew()})}},size:function(){return _.size(this.list)},current:function(){return this.$el.find(".tab-pane.active").attr("id")},add:function(e){var t=this,n=e.id,r=$(this._template_tab(e)),i=$(this._template_tab_content(e));this.list[n]=e.ondel?!0:!1,this.options.onnew?this.$nav.find("#new-tab").before(r):this.$nav.append(r),i.append(e.$el),this.$content.append(i),this.size()==1&&(r.addClass("active"),i.addClass("active"),this.first_tab=n),this.options.max&&this.size()>=this.options.max&&this.$el.find("#new-tab").hide();if(e.ondel){var s=r.find("#delete");s.tooltip({title:"Delete this tab",placement:"bottom",container:t.$el}),s.on("click",function(){return s.tooltip("destroy"),t.$el.find(".tooltip").remove(),e.ondel(),!1})}r.on("click",function(r){r.preventDefault(),e.onclick?e.onclick():t.show(n)}),this.current_id||(this.current_id=n)},del:function(e){this.$el.find("#tab-"+e).remove(),this.$el.find("#"+e).remove(),this.first_tab==e&&(this.first_tab=null),this.first_tab!=null&&this.show(this.first_tab),this.list[e]&&delete this.list[e],this.size()<this.options.max&&this.$el.find("#new-tab").show()},delRemovable:function(){for(var e in this.list)this.del(e)},show:function(e){this.$el.fadeIn("fast"),this.visible=!0,e&&(this.$el.find("#tab-"+this.current_id).removeClass("active"),this.$el.find("#"+this.current_id).removeClass("active"),this.$el.find("#tab-"+e).addClass("active"),this.$el.find("#"+e).addClass("active"),this.current_id=e),this.options.onchange&&this.options.onchange(e)},hide:function(){this.$el.fadeOut("fast"),this.visible=!1},hideOperation:function(e){this.$nav.find("#"+e).hide()},showOperation:function(e){this.$nav.find("#"+e).show()},setOperation:function(e,t){var n=this.$nav.find("#"+e);n.off("click"),n.on("click",t)},title:function(e,t){var n=this.$el.find("#tab-title-text-"+e);return t&&n.html(t),n.html()},retitle:function(e){var t=0;for(var n in this.list)this.title(n,++t+": "+e)},_template:function(e){return'<div class="ui-tabs tabbable tabs-left"><ul id="tab-navigation" class="tab-navigation nav nav-tabs"><div class="operations" style="float: right; margin-bottom: 4px;"></div></ul><div id="tab-content" class="tab-content"/></div>'},_template_tab_new:function(e){return'<li id="new-tab"><a href="javascript:void(0);"><i class="ui-tabs-add fa fa-plus-circle"/>'+e.title_new+"</a>"+"</li>"},_template_tab:function(e){var t='<li id="tab-'+e.id+'" class="tab-element">'+'<a id="tab-title-link-'+e.id+'" title="" href="#'+e.id+'" data-original-title="">'+'<span id="tab-title-text-'+e.id+'" class="tab-title-text">'+e.title+"</span>";return e.ondel&&(t+='<i id="delete" class="ui-tabs-delete fa fa-minus-circle"/>'),t+="</a></li>",t},_template_tab_content:function(e){return'<div id="'+e.id+'" class="tab-pane"/>'}});return{View:t}}),define("mvc/ui/ui-table",["utils/utils"],function(e){var t=Backbone.View.extend({row:null,row_count:0,optionsDefault:{content:"No content available.",onchange:null,ondblclick:null,onconfirm:null,cls:"ui-table",cls_tr:""},events:{click:"_onclick",dblclick:"_ondblclick"},initialize:function(t){this.options=e.merge(t,this.optionsDefault);var n=$(this._template(this.options));this.$thead=n.find("thead"),this.$tbody=n.find("tbody"),this.$tmessage=n.find("tmessage"),this.setElement(n),this.row=this._row()},addHeader:function(e){var t=$("<th></th>");t.append(e),this.row.append(t)},appendHeader:function(){this.$thead.append(this.row),this.row=$("<tr></tr>")},add:function(e,t,n){var r=$("<td></td>");t&&r.css("width",t),n&&r.css("text-align",n),r.append(e),this.row.append(r)},append:function(e,t){this._commit(e,t,!1)},prepend:function(e,t){this._commit(e,t,!0)},get:function(e){return this.$el.find("#"+e)},del:function(e){var t=this.$tbody.find("#"+e);t.length>0&&(t.remove(),this.row_count--,this._refresh())},delAll:function(){this.$tbody.empty(),this.row_count=0,this._refresh()},value:function(e){this.before=this.$tbody.find(".current").attr("id"),e!==undefined&&(this.$tbody.find("tr").removeClass("current"),e&&this.$tbody.find("#"+e).addClass("current"));var t=this.$tbody.find(".current").attr("id");return t===undefined?null:(t!=this.before&&this.options.onchange&&this.options.onchange(e),t)},size:function(){return this.$tbody.find("tr").length},_commit:function(e,t,n){this.del(e),this.row.attr("id",e),n?this.$tbody.prepend(this.row):this.$tbody.append(this.row),t&&(this.row.hide(),this.row.fadeIn()),this.row=this._row(),this.row_count++,this._refresh()},_row:function(){return $('<tr class="'+this.options.cls_tr+'"></tr>')},_onclick:function(e){var t=this.value(),n=$(e.target).closest("tr").attr("id");n!=""&&n&&t!=n&&(this.options.onconfirm?this.options.onconfirm(n):this.value(n))},_ondblclick:function(e){var t=this.value();t&&this.options.ondblclick&&this.options.ondblclick(t)},_refresh:function(){this.row_count==0?this.$tmessage.show():this.$tmessage.hide()},_template:function(e){return'<div><table class="'+e.cls+'">'+"<thead></thead>"+"<tbody></tbody>"+"</table>"+"<tmessage>"+e.content+"</tmessage>"+"<div>"}});return{View:t}}),define("plugin/views/group",["mvc/ui/ui-table","mvc/ui/ui-misc","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(r,i){this.app=r;var s=this;this.chart=this.app.chart,this.group=i.group,this.group_key=new t.Input({placeholder:"Data label",onchange:function(e){s.group.set("key",e)}}),this.table=new e.View({content:"No data column."});var o=$("<div/>");o.append(n.wrap((new t.Label({title:"Provide a label:"})).$el)),o.append(n.wrap(this.group_key.$el)),o.append(n.wrap((new t.Label({title:"Select columns:"})).$el)),o.append(n.wrap(this.table.$el)),this.setElement(o);var s=this;this.chart.on("change:dataset_id",function(){s._refreshTable()}),this.chart.on("change:type",function(){s._refreshTable()}),this.group.on("change:key",function(){s._refreshGroupKey()}),this.group.on("change",function(){s._refreshGroup()}),this._refreshTable(),this._refreshGroupKey(),this._refreshGroup()},_refreshTable:function(){var e=this.chart.get("dataset_id"),n=this.chart.get("type");if(!e||!n)return;var r=this,i=this.chart.definition;this.table.delAll();var s={};for(var o in i.columns){var u=i.columns[o];if(!u){console.debug("Group::_refreshTable() - Skipping column definition.");continue}var a=new t.Select.View({id:"select_"+o,wait:!0}),f=u.title;u.is_unique&&(f+=" (all data labels)"),this.table.add(f,"25%"),this.table.add(a.$el),this.table.append(o),s[o]=a}this.chart.state("wait","Loading metadata...");var l=this.app.deferred.register(),c={id:e,success:function(e){for(var t in s)r._addRow(t,e,s,i.columns[t]);r.chart.state("ok","Metadata initialized..."),r.app.deferred.done(l)}};this.app.datasets.request(c)},_addRow:function(e,t,n,r){var i=this,s=r.is_label,o=r.is_auto,u=r.is_numeric,a=r.is_unique,f=r.is_zero,l=[],c=n[e];o&&l.push({label:"Column: Row Number",value:"auto"}),f&&l.push({label:"Column: None",value:"zero"});var h=t.metadata_column_types;for(var p in h){var d=!1;h[p]=="int"||h[p]=="float"?d=u:d=s,d&&l.push({label:"Column: "+(parseInt(p)+1)+" ["+h[p]+"]",value:p})}c.update(l),a&&this.chart.groups.first()&&this.group.set(e,this.chart.groups.first().get(e));if(!c.exists(this.group.get(e))){var v=c.first();console.debug('Group()::_addRow() - Switching model value from "'+this.group.get(e)+'" to "'+v+'".'),this.group.set(e,v)}c.value(this.group.get(e)),this.group.off("change:"+e),this.group.on("change:"+e,function(){c.value(i.group.get(e))}),c.setOnChange(function(t){a?i.chart.groups.each(function(n){n.set(e,t)}):i.group.set(e,t),i.chart.set("modified",!0)}),c.show()},_refreshGroup:function(){this.group.set("date",n.time())},_refreshGroupKey:function(){var e=this.group.get("key");e===undefined&&(e=""),this.group_key.value(e)}})}),define("plugin/library/ui-table-form",["mvc/ui/ui-table","mvc/ui/ui-misc","utils/utils"],function(e,t,n){var r=Backbone.View.extend({optionsDefault:{title:"",content:"",mode:""},list:[],initialize:function(r,i){this.app=r,this.options=n.merge(i,this.optionsDefault),this.table_title=new t.Label({title:this.options.title}),this.table=new e.View({content:this.options.content});var s=$('<div class="ui-table-form"/>');this.options.title&&s.append(n.wrap(this.table_title.$el)),s.append(n.wrap(this.table.$el)),this.setElement(s)},title:function(e){this.table_title.title(e)},update:function(e,t){this.table.delAll(),this.list=[];for(var n in e)this._add(e[n].id||n,e[n],t);for(var n in this.list)this.list[n].trigger("change")},_add:function(e,n,r){var i=this,s=null,o=n.type;switch(o){case"text":s=new t.Input({id:"field-"+e,placeholder:n.placeholder,value:r.get(e),onchange:function(t){r.set(e,t)}});break;case"radiobutton":s=new t.RadioButton.View({id:"field-"+e,data:n.data,value:r.get(e),onchange:function(t){r.set(e,t);var s=_.findWhere(n.data,{value:t});if(s&&s.operations){var o=s.operations;for(var u in o.show){var a=o.show[u];i.table.get(a).show()}for(var u in o.hide){var a=o.hide[u];i.table.get(a).hide()}}}});break;case"select":s=new t.Select.View({id:"field-"+e,data:n.data,value:r.get(e),onchange:function(t){r.set(e,t);var s=_.findWhere(n.data,{value:t});if(s&&s.operations){var o=s.operations;for(var u in o.show){var a=o.show[u];i.table.get(a).show()}for(var u in o.hide){var a=o.hide[u];i.table.get(a).hide()}}}});break;case"dataset":s=new t.Select.View({id:"field-"+e,onchange:function(t){r.set(e,t)}}),i.app.datasets.on("all",function(){var t=[];i.app.datasets.each(function(e){e.get("datatype_id")==n.data&&t.push({value:e.get("id"),label:e.get("name")})}),s.update(t),r.get(e)||r.set(e,s.first()),s.value(r.get(e))}),i.app.datasets.trigger("all.datasets");break;case"textarea":s=new t.Textarea({id:"field-"+e,onchange:function(){r.set(e,s.value())}});break;case"separator":s=$("<div/>");break;default:s=new t.Input({id:"field-"+e,placeholder:n.placeholder,type:n.type,onchange:function(){r.set(e,s.value())}})}if(o!="separator"){r.get(e)||r.set(e,n.init),s.value(r.get(e)),this.list[e]=s;var u=$("<div/>");u.append(s.$el),n.info&&u.append('<div 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o=i.pos[0]+(s.offsetLeft||0),u=i.pos[1]+(s.offsetTop||0),f=i.pos[0]+(s.offsetLeft||0),l=p.range()[0]+a.top+(s.offsetTop||0),c=h.range()[0]+a.left+(s.offsetLeft||0),d=i.pos[1]+(s.offsetTop||0),v=n.tickFormat()(t.x()(i.point,i.pointIndex)),m=r.tickFormat()(t.y()(i.point,i.pointIndex));T!=null&&e.tooltip.show([f,l],T(i.series.key,v,m,i,B),"n",1,s,"x-nvtooltip"),N!=null&&e.tooltip.show([c,d],N(i.series.key,v,m,i,B),"e",1,s,"y-nvtooltip"),C!=null&&e.tooltip.show([o,u],C(i.series.key,v,m,i.point.tooltip,i,B),i.value<0?"n":"s",null,s)},H=[{key:"Magnify",disabled:!0}];return t.dispatch.on("elementMouseout.tooltip",function(e){A.tooltipHide(e),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" .nv-distx-"+e.pointIndex).attr("y1",0),d3.select(".nv-chart-"+t.id()+" .nv-series-"+e.seriesIndex+" 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v.size(2.2).sizeDomain([2.2,2.2]),v.dispatch.on("elementClick.area",function(e){m.areaClick(e)}),v.dispatch.on("elementMouseover.tooltip",function(e){e.pos=[e.pos[0]+t.left,e.pos[1]+t.top],m.tooltipShow(e)}),v.dispatch.on("elementMouseout.tooltip",function(e){m.tooltipHide(e)}),g.dispatch=m,g.scatter=v,d3.rebind(g,v,"interactive","size","xScale","yScale","zScale","xDomain","yDomain","xRange","yRange","sizeDomain","forceX","forceY","forceSize","clipVoronoi","useVoronoi","clipRadius","highlightPoint","clearHighlights"),g.options=e.utils.optionsFunc.bind(g),g.x=function(e){return arguments.length?(o=d3.functor(e),g):o},g.y=function(e){return arguments.length?(u=d3.functor(e),g):u},g.margin=function(e){return arguments.length?(t.top=typeof e.top!="undefined"?e.top:t.top,t.right=typeof e.right!="undefined"?e.right:t.right,t.bottom=typeof e.bottom!="undefined"?e.bottom:t.bottom,t.left=typeof e.left!="undefined"?e.left:t.left,g):t},g.width=function(e){return 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link the labels with external sources. Use __LABEL__ as placeholder.",type:"text",init:"",placeholder:"http://someurl.com?id=__LABEL__"}}})}),define("plugin/charts/others/heatmap_cluster/config",["plugin/charts/others/heatmap/config"],function(e){return $.extend(!0,{},e,{title:"Clustered Heatmap",category:"Data processing (requires 'charts' tool from Toolshed)",execute:"heatmap",keywords:"small medium large"})}),define("plugin/charts/types",["plugin/charts/nvd3/bar/config","plugin/charts/nvd3/bar_stacked/config","plugin/charts/nvd3/bar_horizontal/config","plugin/charts/nvd3/bar_horizontal_stacked/config","plugin/charts/nvd3/line_focus/config","plugin/charts/nvd3/pie/config","plugin/charts/nvd3/stackedarea_full/config","plugin/charts/nvd3/stackedarea_stream/config","plugin/charts/nvd3/histogram/config","plugin/charts/nvd3/line/config","plugin/charts/nvd3/scatter/config","plugin/charts/nvd3/stackedarea/config","plugin/charts/jqplot/bar/config","plugin/charts/jqplot/line/config","plugin/charts/jqplot/scatter/config","plugin/charts/jqplot/boxplot/config","plugin/charts/jqplot/histogram_discrete/config","plugin/charts/others/heatmap/config","plugin/charts/others/heatmap_cluster/config"],function(e,t,n,r,i,s,o,u,a,f,l,c,h,p,d,v,m,g,y){return Backbone.Model.extend({defaults:{nvd3_bar:e,nvd3_bar_stacked:t,nvd3_bar_horizontal:n,nvd3_bar_horizontal_stacked:r,nvd3_line_focus:i,nvd3_stackedarea:c,nvd3_stackedarea_full:o,nvd3_stackedarea_stream:u,nvd3_pie:s,nvd3_line:f,nvd3_scatter:l,nvd3_histogram:a,jqplot_bar:h,jqplot_histogram_discrete:m,jqplot_line:p,jqplot_scatter:d,jqplot_boxplot:v,others_heatmap:g,others_heatmap_cluster:y}})}),define("plugin/app",["mvc/ui/ui-modal","mvc/ui/ui-portlet","mvc/ui/ui-misc","utils/utils","plugin/library/jobs","plugin/library/datasets","plugin/library/storage","utils/deferred","plugin/views/viewer","plugin/views/editor","plugin/models/config","plugin/models/chart","plugin/charts/types"],function(e,t,n,r,i,s,o,u,a,f,l,c,h){return Backbone.View.extend({initialize:function(t){this.options=t,Galaxy&&Galaxy.modal?this.modal=Galaxy.modal:this.modal=new e.View,this.config=new l,this.types=new h,this.chart=new c,this.jobs=new i(this),this.datasets=new s(this),this.storage=new o(this),this.deferred=new u,this.viewer_view=new a(this),this.editor_view=new f(this),this.$el.append(this.viewer_view.$el),this.$el.append(this.editor_view.$el);if(!this.storage.load())this.go("editor");else{this.go("viewer");var n=this;this.deferred.execute(function(){n.chart.trigger("redraw")})}},go:function(e){$(".tooltip").hide();switch(e){case"editor":this.editor_view.show(),this.viewer_view.hide();break;case"viewer":this.editor_view.hide(),this.viewer_view.show()}},chartPath:function(e){var t=e.split(/_(.+)/);return t.length>=2?t[0]+"/"+t[1]:(console.debug("FAILED App:chartPath() - Invalid format: "+e),undefined)}})}); \ No newline at end of file diff -r a8aa8c67fe5335df93e3195bb46beb62783325bd -r eca8b8ed910366a2f72b778ace674e3126832e66 static/style/blue/base.css --- a/static/style/blue/base.css +++ b/static/style/blue/base.css @@ -1412,7 +1412,7 @@ .ui-button-icon-plain{border:none !important;background:none !important;height:inherit !important;width:inherit !important;padding-right:3px !important} .ui-tabs .ui-tabs-add{font-size:0.8em;margin-right:5px} .ui-tabs .ui-tabs-delete{font-size:0.8em;margin-left:5px;cursor:pointer} -.ui-portlet,.ui-portlet-slim,.ui-portlet-repeat,.ui-portlet-slim,.ui-portlet-repeat{border:solid #d6b161 1px;-webkit-border-radius:3px;-moz-border-radius:3px;border-radius:3px;position:relative;clear:both;width:auto;height:100%}.ui-portlet .portlet-header,.ui-portlet-slim .portlet-header{background:#ebd9b2;border-bottom:solid #d6b161 1px;padding:2px 8px;overflow:visible;float:right;width:100%}.ui-portlet .portlet-header .portlet-title .portlet-title-text,.ui-portlet-slim .portlet-header .portlet-title .portlet-title-text{vertical-align:middle} +.ui-portlet,.ui-portlet-slim,.ui-portlet-repeat,.ui-portlet-slim,.ui-portlet-repeat{border:solid #d6b161 1px;-webkit-border-radius:3px;-moz-border-radius:3px;border-radius:3px;position:relative;clear:both;width:auto;height:100%}.ui-portlet .portlet-header,.ui-portlet-slim .portlet-header{background:#ebd9b2;border-bottom:solid #d6b161 1px;padding:2px 8px;overflow:visible;float:right;width:100%}.ui-portlet .portlet-header .portlet-title,.ui-portlet-slim .portlet-header .portlet-title{display:inline;vertical-align:middle}.ui-portlet .portlet-header .portlet-title .portlet-title-text,.ui-portlet-slim .portlet-header .portlet-title .portlet-title-text{vertical-align:middle} .ui-portlet .portlet-header .portlet-title .icon,.ui-portlet-slim .portlet-header .portlet-title .icon{font-size:1.2em;vertical-align:middle} .ui-portlet .portlet-buttons,.ui-portlet-slim .portlet-buttons{height:50px;padding:10px} .ui-portlet .portlet-content,.ui-portlet-slim .portlet-content{height:inherit;padding:10px;clear:both}.ui-portlet .portlet-content .content,.ui-portlet-slim .portlet-content .content{padding:10px;height:100%;width:100%}.ui-portlet .portlet-content .content .buttons,.ui-portlet-slim .portlet-content .content .buttons{height:50px;padding:10px} diff -r a8aa8c67fe5335df93e3195bb46beb62783325bd -r eca8b8ed910366a2f72b778ace674e3126832e66 static/style/src/less/ui.less --- a/static/style/src/less/ui.less +++ b/static/style/src/less/ui.less @@ -163,6 +163,8 @@ width:100%; .portlet-title { + display: inline; + vertical-align: middle; .portlet-title-text { vertical-align: middle; } Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: guerler: ToolForm: Show labels for menu bar buttons
by commits-noreply＠bitbucket.org 10 Dec '14

10 Dec '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/a8aa8c67fe53/ Changeset: a8aa8c67fe53 User: guerler Date: 2014-12-10 15:16:04+00:00 Summary: ToolForm: Show labels for menu bar buttons Affected #: 3 files diff -r 3e068b37bca33448451682275b0bbb27d594ba41 -r a8aa8c67fe5335df93e3195bb46beb62783325bd client/galaxy/scripts/mvc/tools/tools-form.js --- a/client/galaxy/scripts/mvc/tools/tools-form.js +++ b/client/galaxy/scripts/mvc/tools/tools-form.js @@ -312,6 +312,7 @@ // button for version selection var requirements_button = new Ui.ButtonIcon({ icon : 'fa-info-circle', + title : 'Requirements', tooltip : 'Display tool requirements', onclick : function() { if (!this.visible) { @@ -342,12 +343,13 @@ if (options.versions && options.versions.length > 1) { for (var i in options.versions) { versions_button.addMenu({ - title : options.versions[i], + title : 'Switch to ' + options.versions[i], + version : options.versions[i], icon : 'fa-cube', onclick : function() { // here we update the tool version (some tools encode the version also in the id) - options.id = options.id.replace(options.version, this.title); - options.version = this.title; + options.id = options.id.replace(options.version, this.version); + options.version = this.version; // rebuild the model and form self.deferred.reset(); @@ -362,6 +364,7 @@ // button menu var menu_button = new Ui.ButtonMenu({ icon : 'fa-gear', + title : 'Options', tooltip : 'View available options' }); diff -r 3e068b37bca33448451682275b0bbb27d594ba41 -r a8aa8c67fe5335df93e3195bb46beb62783325bd static/scripts/mvc/tools/tools-form.js --- a/static/scripts/mvc/tools/tools-form.js +++ b/static/scripts/mvc/tools/tools-form.js @@ -312,6 +312,7 @@ // button for version selection var requirements_button = new Ui.ButtonIcon({ icon : 'fa-info-circle', + title : 'Requirements', tooltip : 'Display tool requirements', onclick : function() { if (!this.visible) { @@ -342,12 +343,13 @@ if (options.versions && options.versions.length > 1) { for (var i in options.versions) { versions_button.addMenu({ - title : options.versions[i], + title : 'Switch to ' + options.versions[i], + version : options.versions[i], icon : 'fa-cube', onclick : function() { // here we update the tool version (some tools encode the version also in the id) - options.id = options.id.replace(options.version, this.title); - options.version = this.title; + options.id = options.id.replace(options.version, this.version); + options.version = this.version; // rebuild the model and form self.deferred.reset(); @@ -362,6 +364,7 @@ // button menu var menu_button = new Ui.ButtonMenu({ icon : 'fa-gear', + title : 'Options', tooltip : 'View available options' }); diff -r 3e068b37bca33448451682275b0bbb27d594ba41 -r a8aa8c67fe5335df93e3195bb46beb62783325bd static/scripts/packed/mvc/tools/tools-form.js --- a/static/scripts/packed/mvc/tools/tools-form.js +++ b/static/scripts/packed/mvc/tools/tools-form.js @@ -1,1 +1,1 @@ -define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree","mvc/tools/tools-jobs"],function(i,j,h,m,k,a,e,d,f,l,c,g){var b=Backbone.View.extend({container:"body",initialize:function(o){console.debug(o);var n=this;var p=parent.Galaxy;if(p&&p.modal){this.modal=p.modal}else{this.modal=new m.Modal.View()}if(p&&p.currUser){this.is_admin=p.currUser.get("is_admin")}else{this.is_admin=false}this.options=o;this.deferred=new j();this.setElement("<div/>");$(this.container).append(this.$el);this._buildForm()},reciept:function(n){$(this.container).empty();$(this.container).append(n)},reset:function(){for(var n in this.element_list){this.element_list[n].reset()}},rebuild:function(){this.tree.refresh();console.debug("tools-form::rebuild() - Rebuilding data structures.")},refresh:function(){if(this.is_dynamic){var n=this;this.deferred.reset();this.deferred.execute(function(){n._updateModel()})}},_buildModel:function(){var n=this;var o=galaxy_config.root+"api/tools/"+this.options.id+"/build?";if(this.options.job_id){o+="job_id="+this.options.job_id}else{if(this.options.dataset_id){o+="dataset_id="+this.options.dataset_id}else{o+="tool_version="+this.options.version+"&";var q=top.location.href;var r=q.indexOf("?");if(q.indexOf("tool_id=")!=-1&&r!==-1){o+=q.slice(r+1)}}}var p=this.deferred.register();i.request({type:"GET",url:o,success:function(s){n.options=s;n._buildForm();n.message.update({status:"success",message:"Now you are using '"+n.options.name+"' version "+n.options.version+".",persistent:false});n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model ready.");console.debug(s)},error:function(s){n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model request failed.");console.debug(s);var t=s.error||"Uncaught error.";n.modal.show({title:"Tool cannot be executed",body:t,buttons:{Close:function(){n.modal.hide()}}})}})},_updateModel:function(){var n=this;var o=this.tree.finalize({data:function(s){if(s.values.length>0&&s.values[0]&&s.values[0].src==="hda"){return n.content.get({id:s.values[0].id,src:"hda"}).id_uncoded}return null}});console.debug("tools-form::_refreshForm() - Refreshing states.");console.debug(o);function r(v){for(var t in n.input_list){var u=n.field_list[t];var s=n.input_list[t];if(s.is_dynamic&&u.wait&&u.unwait){if(v){u.wait()}else{u.unwait()}}}}r(true);var q=this.deferred.register();var p=galaxy_config.root+"api/tools/"+this.options.id+"/build?tool_version="+this.options.version;i.request({type:"GET",url:p,data:o,success:function(s){n._updateForm(s);r(false);n.deferred.done(q);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(s)},error:function(s){n.deferred.done(q);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(s)}})},_updateForm:function(n){var o=this;this.tree.matchModel(n,function(q,u){var p=o.input_list[q];if(p&&p.options){if(!_.isEqual(p.options,u.options)){p.options=u.options;var v=o.field_list[q];if(v.update){var t=[];if((["data","data_collection","drill_down"]).indexOf(p.type)!=-1){t=p.options}else{for(var s in u.options){var r=u.options[s];if(r.length>2){t.push({label:r[0],value:r[1]})}}}v.update(t);v.trigger("change");console.debug("Updating options for "+q)}}}})},_buildForm:function(){var w=this;this.field_list={};this.input_list={};this.element_list={};this.tree=new c(this);this.job_handler=new g(this);this.content=new f(this);var x=this.options;this.message=new m.Message();var n="This tool requires ";for(var r in x.requirements){var v=x.requirements[r];n+=v.name;if(v.version){n+=" (Version "+v.version+")"}if(r<x.requirements.length-2){n+=", "}if(r==x.requirements.length-2){n+=" and "}}n+=".";var t=new m.ButtonIcon({icon:"fa-info-circle",tooltip:"Display tool requirements",onclick:function(){if(!this.visible){this.visible=true;w.message.update({persistent:true,message:n,status:"warning"})}else{this.visible=false;w.message.update({message:""})}}});if(!x.requirements||x.requirements.length==0){t.$el.hide()}var p=new m.ButtonMenu({icon:"fa-cubes",title:"Versions",tooltip:"Select another tool version"});if(x.versions&&x.versions.length>1){for(var r in x.versions){p.addMenu({title:x.versions[r],icon:"fa-cube",onclick:function(){x.id=x.id.replace(x.version,this.title);x.version=this.title;w.deferred.reset();w.deferred.execute(function(){w._buildModel()})}})}}else{p.$el.hide()}var s=new m.ButtonMenu({icon:"fa-gear",tooltip:"View available options"});if(x.biostar_url){s.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/p/new/post/")}});s.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/t/"+x.id+"/")}})}s.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+x.id)}});if(this.is_admin){s.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+x.id+"/download"}})}this.section=new l.View(w,{inputs:x.inputs,cls:"ui-table-plain"});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new h.View({icon:"fa-wrench",title:"<b>"+x.name+"</b> "+x.description+" (Version "+x.version+")",cls:"ui-portlet-slim",operations:{requirements:t,menu:s,versions:p},buttons:{execute:new m.Button({icon:"fa-check",tooltip:"Execute: "+x.name,title:"Execute",cls:"btn btn-primary",floating:"clear",onclick:function(){w.job_handler.submit()}})}});this.$el.empty();this.$el.append(this.portlet.$el);if(x.help!=""){this.$el.append(d.help(x.help))}if(x.citations){var u=$("<div/>");var o=new k.ToolCitationCollection();o.tool_id=x.id;var q=new a.CitationListView({el:u,collection:o});q.render();o.fetch();this.$el.append(u)}this.portlet.append(this.message.$el,true);this.portlet.append(this.section.$el);this.rebuild();if(x.message){this.message.update({persistent:true,status:"warning",message:x.message})}}});return{View:b}}); \ No newline at end of file +define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree","mvc/tools/tools-jobs"],function(i,j,h,m,k,a,e,d,f,l,c,g){var b=Backbone.View.extend({container:"body",initialize:function(o){console.debug(o);var n=this;var p=parent.Galaxy;if(p&&p.modal){this.modal=p.modal}else{this.modal=new m.Modal.View()}if(p&&p.currUser){this.is_admin=p.currUser.get("is_admin")}else{this.is_admin=false}this.options=o;this.deferred=new j();this.setElement("<div/>");$(this.container).append(this.$el);this._buildForm()},reciept:function(n){$(this.container).empty();$(this.container).append(n)},reset:function(){for(var n in this.element_list){this.element_list[n].reset()}},rebuild:function(){this.tree.refresh();console.debug("tools-form::rebuild() - Rebuilding data structures.")},refresh:function(){if(this.is_dynamic){var n=this;this.deferred.reset();this.deferred.execute(function(){n._updateModel()})}},_buildModel:function(){var n=this;var o=galaxy_config.root+"api/tools/"+this.options.id+"/build?";if(this.options.job_id){o+="job_id="+this.options.job_id}else{if(this.options.dataset_id){o+="dataset_id="+this.options.dataset_id}else{o+="tool_version="+this.options.version+"&";var q=top.location.href;var r=q.indexOf("?");if(q.indexOf("tool_id=")!=-1&&r!==-1){o+=q.slice(r+1)}}}var p=this.deferred.register();i.request({type:"GET",url:o,success:function(s){n.options=s;n._buildForm();n.message.update({status:"success",message:"Now you are using '"+n.options.name+"' version "+n.options.version+".",persistent:false});n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model ready.");console.debug(s)},error:function(s){n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model request failed.");console.debug(s);var t=s.error||"Uncaught error.";n.modal.show({title:"Tool cannot be executed",body:t,buttons:{Close:function(){n.modal.hide()}}})}})},_updateModel:function(){var n=this;var o=this.tree.finalize({data:function(s){if(s.values.length>0&&s.values[0]&&s.values[0].src==="hda"){return n.content.get({id:s.values[0].id,src:"hda"}).id_uncoded}return null}});console.debug("tools-form::_refreshForm() - Refreshing states.");console.debug(o);function r(v){for(var t in n.input_list){var u=n.field_list[t];var s=n.input_list[t];if(s.is_dynamic&&u.wait&&u.unwait){if(v){u.wait()}else{u.unwait()}}}}r(true);var q=this.deferred.register();var p=galaxy_config.root+"api/tools/"+this.options.id+"/build?tool_version="+this.options.version;i.request({type:"GET",url:p,data:o,success:function(s){n._updateForm(s);r(false);n.deferred.done(q);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(s)},error:function(s){n.deferred.done(q);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(s)}})},_updateForm:function(n){var o=this;this.tree.matchModel(n,function(q,u){var p=o.input_list[q];if(p&&p.options){if(!_.isEqual(p.options,u.options)){p.options=u.options;var v=o.field_list[q];if(v.update){var t=[];if((["data","data_collection","drill_down"]).indexOf(p.type)!=-1){t=p.options}else{for(var s in u.options){var r=u.options[s];if(r.length>2){t.push({label:r[0],value:r[1]})}}}v.update(t);v.trigger("change");console.debug("Updating options for "+q)}}}})},_buildForm:function(){var w=this;this.field_list={};this.input_list={};this.element_list={};this.tree=new c(this);this.job_handler=new g(this);this.content=new f(this);var x=this.options;this.message=new m.Message();var n="This tool requires ";for(var r in x.requirements){var v=x.requirements[r];n+=v.name;if(v.version){n+=" (Version "+v.version+")"}if(r<x.requirements.length-2){n+=", "}if(r==x.requirements.length-2){n+=" and "}}n+=".";var t=new m.ButtonIcon({icon:"fa-info-circle",title:"Requirements",tooltip:"Display tool requirements",onclick:function(){if(!this.visible){this.visible=true;w.message.update({persistent:true,message:n,status:"warning"})}else{this.visible=false;w.message.update({message:""})}}});if(!x.requirements||x.requirements.length==0){t.$el.hide()}var p=new m.ButtonMenu({icon:"fa-cubes",title:"Versions",tooltip:"Select another tool version"});if(x.versions&&x.versions.length>1){for(var r in x.versions){p.addMenu({title:"Switch to "+x.versions[r],version:x.versions[r],icon:"fa-cube",onclick:function(){x.id=x.id.replace(x.version,this.version);x.version=this.version;w.deferred.reset();w.deferred.execute(function(){w._buildModel()})}})}}else{p.$el.hide()}var s=new m.ButtonMenu({icon:"fa-gear",title:"Options",tooltip:"View available options"});if(x.biostar_url){s.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/p/new/post/")}});s.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/t/"+x.id+"/")}})}s.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+x.id)}});if(this.is_admin){s.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+x.id+"/download"}})}this.section=new l.View(w,{inputs:x.inputs,cls:"ui-table-plain"});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new h.View({icon:"fa-wrench",title:"<b>"+x.name+"</b> "+x.description+" (Version "+x.version+")",cls:"ui-portlet-slim",operations:{requirements:t,menu:s,versions:p},buttons:{execute:new m.Button({icon:"fa-check",tooltip:"Execute: "+x.name,title:"Execute",cls:"btn btn-primary",floating:"clear",onclick:function(){w.job_handler.submit()}})}});this.$el.empty();this.$el.append(this.portlet.$el);if(x.help!=""){this.$el.append(d.help(x.help))}if(x.citations){var u=$("<div/>");var o=new k.ToolCitationCollection();o.tool_id=x.id;var q=new a.CitationListView({el:u,collection:o});q.render();o.fetch();this.$el.append(u)}this.portlet.append(this.message.$el,true);this.portlet.append(this.section.$el);this.rebuild();if(x.message){this.message.update({persistent:true,status:"warning",message:x.message})}}});return{View:b}}); \ No newline at end of file Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. 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commit/galaxy-central: guerler: ToolForm: Update tool tips
by commits-noreply＠bitbucket.org 10 Dec '14

10 Dec '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/3e068b37bca3/ Changeset: 3e068b37bca3 User: guerler Date: 2014-12-10 14:56:23+00:00 Summary: ToolForm: Update tool tips Affected #: 3 files diff -r 5893d4487c1de27edd99fe07427e32b5c28d1ba8 -r 3e068b37bca33448451682275b0bbb27d594ba41 client/galaxy/scripts/mvc/tools/tools-form.js --- a/client/galaxy/scripts/mvc/tools/tools-form.js +++ b/client/galaxy/scripts/mvc/tools/tools-form.js @@ -312,7 +312,7 @@ // button for version selection var requirements_button = new Ui.ButtonIcon({ icon : 'fa-info-circle', - tooltip : 'Click to show/hide the tool requirements.', + tooltip : 'Display tool requirements', onclick : function() { if (!this.visible) { this.visible = true; @@ -337,7 +337,7 @@ var versions_button = new Ui.ButtonMenu({ icon : 'fa-cubes', title : 'Versions', - tooltip : 'Click to view available versions.' + tooltip : 'Select another tool version' }); if (options.versions && options.versions.length > 1) { for (var i in options.versions) { @@ -362,7 +362,7 @@ // button menu var menu_button = new Ui.ButtonMenu({ icon : 'fa-gear', - tooltip : 'Click to view a list of options.' + tooltip : 'View available options' }); // configure button selection diff -r 5893d4487c1de27edd99fe07427e32b5c28d1ba8 -r 3e068b37bca33448451682275b0bbb27d594ba41 static/scripts/mvc/tools/tools-form.js --- a/static/scripts/mvc/tools/tools-form.js +++ b/static/scripts/mvc/tools/tools-form.js @@ -312,7 +312,7 @@ // button for version selection var requirements_button = new Ui.ButtonIcon({ icon : 'fa-info-circle', - tooltip : 'Click to show/hide the tool requirements.', + tooltip : 'Display tool requirements', onclick : function() { if (!this.visible) { this.visible = true; @@ -337,7 +337,7 @@ var versions_button = new Ui.ButtonMenu({ icon : 'fa-cubes', title : 'Versions', - tooltip : 'Click to view available versions.' + tooltip : 'Select another tool version' }); if (options.versions && options.versions.length > 1) { for (var i in options.versions) { @@ -362,7 +362,7 @@ // button menu var menu_button = new Ui.ButtonMenu({ icon : 'fa-gear', - tooltip : 'Click to view a list of options.' + tooltip : 'View available options' }); // configure button selection diff -r 5893d4487c1de27edd99fe07427e32b5c28d1ba8 -r 3e068b37bca33448451682275b0bbb27d594ba41 static/scripts/packed/mvc/tools/tools-form.js --- a/static/scripts/packed/mvc/tools/tools-form.js +++ b/static/scripts/packed/mvc/tools/tools-form.js @@ -1,1 +1,1 @@ -define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree","mvc/tools/tools-jobs"],function(i,j,h,m,k,a,e,d,f,l,c,g){var b=Backbone.View.extend({container:"body",initialize:function(o){console.debug(o);var n=this;var p=parent.Galaxy;if(p&&p.modal){this.modal=p.modal}else{this.modal=new m.Modal.View()}if(p&&p.currUser){this.is_admin=p.currUser.get("is_admin")}else{this.is_admin=false}this.options=o;this.deferred=new j();this.setElement("<div/>");$(this.container).append(this.$el);this._buildForm()},reciept:function(n){$(this.container).empty();$(this.container).append(n)},reset:function(){for(var n in this.element_list){this.element_list[n].reset()}},rebuild:function(){this.tree.refresh();console.debug("tools-form::rebuild() - Rebuilding data structures.")},refresh:function(){if(this.is_dynamic){var n=this;this.deferred.reset();this.deferred.execute(function(){n._updateModel()})}},_buildModel:function(){var n=this;var o=galaxy_config.root+"api/tools/"+this.options.id+"/build?";if(this.options.job_id){o+="job_id="+this.options.job_id}else{if(this.options.dataset_id){o+="dataset_id="+this.options.dataset_id}else{o+="tool_version="+this.options.version+"&";var q=top.location.href;var r=q.indexOf("?");if(q.indexOf("tool_id=")!=-1&&r!==-1){o+=q.slice(r+1)}}}var p=this.deferred.register();i.request({type:"GET",url:o,success:function(s){n.options=s;n._buildForm();n.message.update({status:"success",message:"Now you are using '"+n.options.name+"' version "+n.options.version+".",persistent:false});n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model ready.");console.debug(s)},error:function(s){n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model request failed.");console.debug(s);var t=s.error||"Uncaught error.";n.modal.show({title:"Tool cannot be executed",body:t,buttons:{Close:function(){n.modal.hide()}}})}})},_updateModel:function(){var n=this;var o=this.tree.finalize({data:function(s){if(s.values.length>0&&s.values[0]&&s.values[0].src==="hda"){return n.content.get({id:s.values[0].id,src:"hda"}).id_uncoded}return null}});console.debug("tools-form::_refreshForm() - Refreshing states.");console.debug(o);function r(v){for(var t in n.input_list){var u=n.field_list[t];var s=n.input_list[t];if(s.is_dynamic&&u.wait&&u.unwait){if(v){u.wait()}else{u.unwait()}}}}r(true);var q=this.deferred.register();var p=galaxy_config.root+"api/tools/"+this.options.id+"/build?tool_version="+this.options.version;i.request({type:"GET",url:p,data:o,success:function(s){n._updateForm(s);r(false);n.deferred.done(q);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(s)},error:function(s){n.deferred.done(q);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(s)}})},_updateForm:function(n){var o=this;this.tree.matchModel(n,function(q,u){var p=o.input_list[q];if(p&&p.options){if(!_.isEqual(p.options,u.options)){p.options=u.options;var v=o.field_list[q];if(v.update){var t=[];if((["data","data_collection","drill_down"]).indexOf(p.type)!=-1){t=p.options}else{for(var s in u.options){var r=u.options[s];if(r.length>2){t.push({label:r[0],value:r[1]})}}}v.update(t);v.trigger("change");console.debug("Updating options for "+q)}}}})},_buildForm:function(){var w=this;this.field_list={};this.input_list={};this.element_list={};this.tree=new c(this);this.job_handler=new g(this);this.content=new f(this);var x=this.options;this.message=new m.Message();var n="This tool requires ";for(var r in x.requirements){var v=x.requirements[r];n+=v.name;if(v.version){n+=" (Version "+v.version+")"}if(r<x.requirements.length-2){n+=", "}if(r==x.requirements.length-2){n+=" and "}}n+=".";var t=new m.ButtonIcon({icon:"fa-info-circle",tooltip:"Click to show/hide the tool requirements.",onclick:function(){if(!this.visible){this.visible=true;w.message.update({persistent:true,message:n,status:"warning"})}else{this.visible=false;w.message.update({message:""})}}});if(!x.requirements||x.requirements.length==0){t.$el.hide()}var p=new m.ButtonMenu({icon:"fa-cubes",title:"Versions",tooltip:"Click to view available versions."});if(x.versions&&x.versions.length>1){for(var r in x.versions){p.addMenu({title:x.versions[r],icon:"fa-cube",onclick:function(){x.id=x.id.replace(x.version,this.title);x.version=this.title;w.deferred.reset();w.deferred.execute(function(){w._buildModel()})}})}}else{p.$el.hide()}var s=new m.ButtonMenu({icon:"fa-gear",tooltip:"Click to view a list of options."});if(x.biostar_url){s.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/p/new/post/")}});s.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/t/"+x.id+"/")}})}s.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+x.id)}});if(this.is_admin){s.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+x.id+"/download"}})}this.section=new l.View(w,{inputs:x.inputs,cls:"ui-table-plain"});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new h.View({icon:"fa-wrench",title:"<b>"+x.name+"</b> "+x.description+" (Version "+x.version+")",cls:"ui-portlet-slim",operations:{requirements:t,menu:s,versions:p},buttons:{execute:new m.Button({icon:"fa-check",tooltip:"Execute: "+x.name,title:"Execute",cls:"btn btn-primary",floating:"clear",onclick:function(){w.job_handler.submit()}})}});this.$el.empty();this.$el.append(this.portlet.$el);if(x.help!=""){this.$el.append(d.help(x.help))}if(x.citations){var u=$("<div/>");var o=new k.ToolCitationCollection();o.tool_id=x.id;var q=new a.CitationListView({el:u,collection:o});q.render();o.fetch();this.$el.append(u)}this.portlet.append(this.message.$el,true);this.portlet.append(this.section.$el);this.rebuild();if(x.message){this.message.update({persistent:true,status:"warning",message:x.message})}}});return{View:b}}); \ No newline at end of file +define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree","mvc/tools/tools-jobs"],function(i,j,h,m,k,a,e,d,f,l,c,g){var b=Backbone.View.extend({container:"body",initialize:function(o){console.debug(o);var n=this;var p=parent.Galaxy;if(p&&p.modal){this.modal=p.modal}else{this.modal=new m.Modal.View()}if(p&&p.currUser){this.is_admin=p.currUser.get("is_admin")}else{this.is_admin=false}this.options=o;this.deferred=new j();this.setElement("<div/>");$(this.container).append(this.$el);this._buildForm()},reciept:function(n){$(this.container).empty();$(this.container).append(n)},reset:function(){for(var n in this.element_list){this.element_list[n].reset()}},rebuild:function(){this.tree.refresh();console.debug("tools-form::rebuild() - Rebuilding data structures.")},refresh:function(){if(this.is_dynamic){var n=this;this.deferred.reset();this.deferred.execute(function(){n._updateModel()})}},_buildModel:function(){var n=this;var o=galaxy_config.root+"api/tools/"+this.options.id+"/build?";if(this.options.job_id){o+="job_id="+this.options.job_id}else{if(this.options.dataset_id){o+="dataset_id="+this.options.dataset_id}else{o+="tool_version="+this.options.version+"&";var q=top.location.href;var r=q.indexOf("?");if(q.indexOf("tool_id=")!=-1&&r!==-1){o+=q.slice(r+1)}}}var p=this.deferred.register();i.request({type:"GET",url:o,success:function(s){n.options=s;n._buildForm();n.message.update({status:"success",message:"Now you are using '"+n.options.name+"' version "+n.options.version+".",persistent:false});n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model ready.");console.debug(s)},error:function(s){n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model request failed.");console.debug(s);var t=s.error||"Uncaught error.";n.modal.show({title:"Tool cannot be executed",body:t,buttons:{Close:function(){n.modal.hide()}}})}})},_updateModel:function(){var n=this;var o=this.tree.finalize({data:function(s){if(s.values.length>0&&s.values[0]&&s.values[0].src==="hda"){return n.content.get({id:s.values[0].id,src:"hda"}).id_uncoded}return null}});console.debug("tools-form::_refreshForm() - Refreshing states.");console.debug(o);function r(v){for(var t in n.input_list){var u=n.field_list[t];var s=n.input_list[t];if(s.is_dynamic&&u.wait&&u.unwait){if(v){u.wait()}else{u.unwait()}}}}r(true);var q=this.deferred.register();var p=galaxy_config.root+"api/tools/"+this.options.id+"/build?tool_version="+this.options.version;i.request({type:"GET",url:p,data:o,success:function(s){n._updateForm(s);r(false);n.deferred.done(q);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(s)},error:function(s){n.deferred.done(q);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(s)}})},_updateForm:function(n){var o=this;this.tree.matchModel(n,function(q,u){var p=o.input_list[q];if(p&&p.options){if(!_.isEqual(p.options,u.options)){p.options=u.options;var v=o.field_list[q];if(v.update){var t=[];if((["data","data_collection","drill_down"]).indexOf(p.type)!=-1){t=p.options}else{for(var s in u.options){var r=u.options[s];if(r.length>2){t.push({label:r[0],value:r[1]})}}}v.update(t);v.trigger("change");console.debug("Updating options for "+q)}}}})},_buildForm:function(){var w=this;this.field_list={};this.input_list={};this.element_list={};this.tree=new c(this);this.job_handler=new g(this);this.content=new f(this);var x=this.options;this.message=new m.Message();var n="This tool requires ";for(var r in x.requirements){var v=x.requirements[r];n+=v.name;if(v.version){n+=" (Version "+v.version+")"}if(r<x.requirements.length-2){n+=", "}if(r==x.requirements.length-2){n+=" and "}}n+=".";var t=new m.ButtonIcon({icon:"fa-info-circle",tooltip:"Display tool requirements",onclick:function(){if(!this.visible){this.visible=true;w.message.update({persistent:true,message:n,status:"warning"})}else{this.visible=false;w.message.update({message:""})}}});if(!x.requirements||x.requirements.length==0){t.$el.hide()}var p=new m.ButtonMenu({icon:"fa-cubes",title:"Versions",tooltip:"Select another tool version"});if(x.versions&&x.versions.length>1){for(var r in x.versions){p.addMenu({title:x.versions[r],icon:"fa-cube",onclick:function(){x.id=x.id.replace(x.version,this.title);x.version=this.title;w.deferred.reset();w.deferred.execute(function(){w._buildModel()})}})}}else{p.$el.hide()}var s=new m.ButtonMenu({icon:"fa-gear",tooltip:"View available options"});if(x.biostar_url){s.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/p/new/post/")}});s.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/t/"+x.id+"/")}})}s.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+x.id)}});if(this.is_admin){s.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+x.id+"/download"}})}this.section=new l.View(w,{inputs:x.inputs,cls:"ui-table-plain"});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new h.View({icon:"fa-wrench",title:"<b>"+x.name+"</b> "+x.description+" (Version "+x.version+")",cls:"ui-portlet-slim",operations:{requirements:t,menu:s,versions:p},buttons:{execute:new m.Button({icon:"fa-check",tooltip:"Execute: "+x.name,title:"Execute",cls:"btn btn-primary",floating:"clear",onclick:function(){w.job_handler.submit()}})}});this.$el.empty();this.$el.append(this.portlet.$el);if(x.help!=""){this.$el.append(d.help(x.help))}if(x.citations){var u=$("<div/>");var o=new k.ToolCitationCollection();o.tool_id=x.id;var q=new a.CitationListView({el:u,collection:o});q.render();o.fetch();this.$el.append(u)}this.portlet.append(this.message.$el,true);this.portlet.append(this.section.$el);this.rebuild();if(x.message){this.message.update({persistent:true,status:"warning",message:x.message})}}});return{View:b}}); \ No newline at end of file Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: guerler: Scratchbook: Fix renamed resize icon
by commits-noreply＠bitbucket.org 09 Dec '14

09 Dec '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/5893d4487c1d/ Changeset: 5893d4487c1d User: guerler Date: 2014-12-10 08:48:37+00:00 Summary: Scratchbook: Fix renamed resize icon Affected #: 3 files diff -r da7372555da025bdc48c1a00278e282f200b2fc2 -r 5893d4487c1de27edd99fe07427e32b5c28d1ba8 client/galaxy/scripts/mvc/ui/ui-frames.js --- a/client/galaxy/scripts/mvc/ui/ui-frames.js +++ b/client/galaxy/scripts/mvc/ui/ui-frames.js @@ -1003,7 +1003,7 @@ '<div class="f-content">' + '<div class="f-cover"></div>' + '</div>' + - '<span class="f-resize f-icon corner fa fa-resize-full"></span>' + + '<span class="f-resize f-icon corner fa fa-expand"></span>' + '</div>'; }, diff -r da7372555da025bdc48c1a00278e282f200b2fc2 -r 5893d4487c1de27edd99fe07427e32b5c28d1ba8 static/scripts/mvc/ui/ui-frames.js --- a/static/scripts/mvc/ui/ui-frames.js +++ b/static/scripts/mvc/ui/ui-frames.js @@ -1003,7 +1003,7 @@ '<div class="f-content">' + '<div class="f-cover"></div>' + '</div>' + - '<span class="f-resize f-icon corner fa fa-resize-full"></span>' + + '<span class="f-resize f-icon corner fa fa-expand"></span>' + '</div>'; }, diff -r da7372555da025bdc48c1a00278e282f200b2fc2 -r 5893d4487c1de27edd99fe07427e32b5c28d1ba8 static/scripts/packed/mvc/ui/ui-frames.js --- a/static/scripts/packed/mvc/ui/ui-frames.js +++ b/static/scripts/packed/mvc/ui/ui-frames.js @@ -1,1 +1,1 @@ -define([],function(){var a=Backbone.View.extend({options:{frame:{cols:6,rows:3},rows:1000,cell:130,margin:5,scroll:5,top_min:40,frame_max:9,visible:true,onchange:null},cols:0,top:0,top_max:0,frame_z:0,frame_counter:0,frame_counter_id:0,frame_list:[],frame_shadow:null,visible:null,initialize:function(c){var b=this;if(c){this.options=_.defaults(c,this.options)}this.visible=this.options.visible;this.top=this.top_max=this.options.top_min;this.setElement(this._template());$(this.el).append(this._templateBackground());$(this.el).append(this._templateMenu());$(this.el_main).append($(this.el));var d="#frame-shadow";$(this.el).append(this._templateShadow(d.substring(1)));this.frame_shadow={id:d,screen_location:{},grid_location:{},grid_rank:null,grid_lock:false};this._frameResize(this.frame_shadow,{width:0,height:0});this.frame_list[d]=this.frame_shadow;this._panelRefresh();if(!this.visible){this.hide()}else{this.show()}var b=this;$(window).resize(function(){if(b.visible){b._panelRefresh()}})},add:function(c){var f={title:"",content:null,target:"",type:null};if(c){c=_.defaults(c,f)}else{c=f}if(!c.content){return}if(this.frame_counter>=this.options.frame_max){alert("You have reached the maximum number of allowed frames ("+this.options.frame_max+").");return}var d="#frame-"+(this.frame_counter_id++);if($(d).length!==0){alert("This frame already exists. This page might contain multiple frame managers.");return}this.top=this.options.top_min;var e=null;if(c.type==="url"){e=$(this._templateFrameUrl(d.substring(1),c.title,c.content))}else{if(c.type==="other"){e=$(this._templateFrame(d.substring(1),c.title));var b=e.find(".f-content");if(_.isFunction(c.content)){c.content(b)}else{b.append(c.content)}}}$(this.el).append(e);var g={id:d,screen_location:{},grid_location:{},grid_rank:null,grid_lock:false};c.width=this._toPixelCoord("width",this.options.frame.cols);c.height=this._toPixelCoord("height",this.options.frame.rows);this.frame_z=parseInt($(g.id).css("z-index"));this.frame_list[d]=g;this.frame_counter++;this._frameResize(g,{width:c.width,height:c.height});this._frameInsert(g,{top:0,left:0},true);if(!this.visible){this.show()}},show:function(){this.visible=true;this.$el.find(".frame").fadeIn("fast");this.$el.find(this.frame_shadow.id).hide();this.$el.find(".frame-background").show();this._panelRefresh();this._menuRefresh()},hide:function(){if(this.event.type!==null){return}this.visible=false;this.$el.find(".frame").fadeOut("fast");this.$el.find(".frame-background").hide();this.$el.find(".frame-menu").hide();this._menuRefresh()},length:function(){return this.frame_counter},setOnChange:function(b){this.options.onchange=b},event:{type:null,target:null,xy:null},events:{mousemove:"_eventFrameMouseMove",mouseup:"_eventFrameMouseUp",mouseleave:"_eventFrameMouseUp",mousewheel:"_eventPanelScroll",DOMMouseScroll:"_eventPanelScroll","mousedown .frame":"_eventFrameMouseDown","mousedown .frame-background":"_eventHide","mousedown .frame-scroll-up":"_eventPanelScroll_up","mousedown .frame-scroll-down":"_eventPanelScroll_down","mousedown .f-close":"_eventFrameClose","mousedown .f-pin":"_eventFrameLock"},_eventFrameMouseDown:function(b){if(this.event.type!==null){return}if($(b.target).hasClass("f-header")||$(b.target).hasClass("f-title")){this.event.type="drag"}if($(b.target).hasClass("f-resize")){this.event.type="resize"}if(this.event.type===null){return}b.preventDefault();this.event.target=this._frameIdentify(b.target);if(this.event.target.grid_lock){this.event.type=null;return}this.event.xy={x:b.originalEvent.pageX,y:b.originalEvent.pageY};this._frameDragStart(this.event.target)},_eventFrameMouseMove:function(h){if(this.event.type!="drag"&&this.event.type!="resize"){return}var f={x:h.originalEvent.pageX,y:h.originalEvent.pageY};var c={x:f.x-this.event.xy.x,y:f.y-this.event.xy.y};this.event.xy=f;var g=this._frameScreen(this.event.target);if(this.event.type=="resize"){g.width+=c.x;g.height+=c.y;var d=this.options.cell-this.options.margin-1;g.width=Math.max(g.width,d);g.height=Math.max(g.height,d);this._frameResize(this.event.target,g);g.width=this._toGridCoord("width",g.width)+1;g.height=this._toGridCoord("height",g.height)+1;g.width=this._toPixelCoord("width",g.width);g.height=this._toPixelCoord("height",g.height);this._frameResize(this.frame_shadow,g);this._frameInsert(this.frame_shadow,{top:this._toGridCoord("top",g.top),left:this._toGridCoord("left",g.left)})}if(this.event.type=="drag"){g.left+=c.x;g.top+=c.y;this._frameOffset(this.event.target,g);var b={top:this._toGridCoord("top",g.top),left:this._toGridCoord("left",g.left)};if(b.left!==0){b.left++}this._frameInsert(this.frame_shadow,b)}},_eventFrameMouseUp:function(b){if(this.event.type!="drag"&&this.event.type!="resize"){return}this._frameDragStop(this.event.target);this.event.type=null},_eventFrameClose:function(c){if(this.event.type!==null){return}c.preventDefault();var d=this._frameIdentify(c.target);var b=this;$(d.id).fadeOut("fast",function(){$(d.id).remove();delete b.frame_list[d.id];b.frame_counter--;b._panelRefresh(true);b._panelAnimationComplete();if(b.visible&&b.frame_counter==0){b.hide()}})},_eventFrameLock:function(b){if(this.event.type!==null){return}b.preventDefault();var c=this._frameIdentify(b.target);if(c.grid_lock){c.grid_lock=false;$(c.id).find(".f-pin").removeClass("toggle");$(c.id).find(".f-header").removeClass("f-not-allowed");$(c.id).find(".f-title").removeClass("f-not-allowed");$(c.id).find(".f-resize").show();$(c.id).find(".f-close").show()}else{c.grid_lock=true;$(c.id).find(".f-pin").addClass("toggle");$(c.id).find(".f-header").addClass("f-not-allowed");$(c.id).find(".f-title").addClass("f-not-allowed");$(c.id).find(".f-resize").hide();$(c.id).find(".f-close").hide()}},_eventHide:function(b){if(this.event.type!==null){return}this.hide()},_eventPanelScroll:function(b){if(this.event.type!==null||!this.visible){return}var c=$(b.srcElement).parents(".frame");if(c.length!==0){b.stopPropagation();return}b.preventDefault();var d=b.originalEvent.detail?b.originalEvent.detail:b.originalEvent.wheelDelta/-3;this._panelScroll(d)},_eventPanelScroll_up:function(b){if(this.event.type!==null){return}b.preventDefault();this._panelScroll(-this.options.scroll)},_eventPanelScroll_down:function(b){if(this.event.type!==null){return}b.preventDefault();this._panelScroll(this.options.scroll)},_frameIdentify:function(b){return this.frame_list["#"+$(b).closest(".frame").attr("id")]},_frameDragStart:function(c){this._frameFocus(c,true);var b=this._frameScreen(c);this._frameResize(this.frame_shadow,b);this._frameGrid(this.frame_shadow,c.grid_location);c.grid_location=null;$(this.frame_shadow.id).show();$(".f-cover").show()},_frameDragStop:function(c){this._frameFocus(c,false);var b=this._frameScreen(this.frame_shadow);this._frameResize(c,b);this._frameGrid(c,this.frame_shadow.grid_location,true);this.frame_shadow.grid_location=null;$(this.frame_shadow.id).hide();$(".f-cover").hide();this._panelAnimationComplete()},_toGridCoord:function(d,c){var b=(d=="width"||d=="height")?1:-1;if(d=="top"){c-=this.top}return parseInt((c+b*this.options.margin)/this.options.cell,10)},_toPixelCoord:function(d,e){var b=(d=="width"||d=="height")?1:-1;var c=(e*this.options.cell)-b*this.options.margin;if(d=="top"){c+=this.top}return c},_toGrid:function(b){return{top:this._toGridCoord("top",b.top),left:this._toGridCoord("left",b.left),width:this._toGridCoord("width",b.width),height:this._toGridCoord("height",b.height)}},_toPixel:function(b){return{top:this._toPixelCoord("top",b.top),left:this._toPixelCoord("left",b.left),width:this._toPixelCoord("width",b.width),height:this._toPixelCoord("height",b.height)}},_isCollision:function(d){function b(g,f){return !(g.left>f.left+f.width-1||g.left+g.width-1<f.left||g.top>f.top+f.height-1||g.top+g.height-1<f.top)}for(var c in this.frame_list){var e=this.frame_list[c];if(e.grid_location===null){continue}if(b(d,e.grid_location)){return true}}return false},_locationRank:function(b){return(b.top*this.cols)+b.left},_menuRefresh:function(){if(this.visible){if(this.top==this.options.top_min){$(".frame-scroll-up").hide()}else{$(".frame-scroll-up").show()}if(this.top==this.top_max){$(".frame-scroll-down").hide()}else{$(".frame-scroll-down").show()}}if(this.options.onchange){this.options.onchange()}},_panelAnimationComplete:function(){var b=this;$(".frame").promise().done(function(){b._panelScroll(0,true)})},_panelRefresh:function(b){this.cols=parseInt($(window).width()/this.options.cell,10)+1;this._frameInsert(null,null,b)},_panelScroll:function(g,b){var d=this.top-this.options.scroll*g;d=Math.max(d,this.top_max);d=Math.min(d,this.options.top_min);if(this.top!=d){for(var c in this.frame_list){var f=this.frame_list[c];if(f.grid_location!==null){var e={top:f.screen_location.top-(this.top-d),left:f.screen_location.left};this._frameOffset(f,e,b)}}this.top=d}this._menuRefresh()},_frameInsert:function(h,b,d){var c=[];if(h){h.grid_location=null;c.push([h,this._locationRank(b)])}var e=null;for(e in this.frame_list){var g=this.frame_list[e];if(g.grid_location!==null&&!g.grid_lock){g.grid_location=null;c.push([g,g.grid_rank])}}c.sort(function(k,f){var m=k[1];var l=f[1];return m<l?-1:(m>l?1:0)});for(e=0;e<c.length;e++){this._framePlace(c[e][0],d)}this.top_max=0;for(var e in this.frame_list){var h=this.frame_list[e];if(h.grid_location!==null){this.top_max=Math.max(this.top_max,h.grid_location.top+h.grid_location.height)}}this.top_max=$(window).height()-this.top_max*this.options.cell-2*this.options.margin;this.top_max=Math.min(this.top_max,this.options.top_min);this._menuRefresh()},_framePlace:function(h,c){h.grid_location=null;var f=this._toGrid(this._frameScreen(h));var b=false;for(var e=0;e<this.options.rows;e++){for(var d=0;d<Math.max(1,this.cols-f.width);d++){f.top=e;f.left=d;if(!this._isCollision(f)){b=true;break}}if(b){break}}if(b){this._frameGrid(h,f,c)}else{console.log("Grid dimensions exceeded.")}},_frameFocus:function(d,b){var c=this.frame_z+(b?1:0);$(d.id).css("z-index",c)},_frameOffset:function(e,d,c){e.screen_location.left=d.left;e.screen_location.top=d.top;if(c){this._frameFocus(e,true);var b=this;$(e.id).animate({top:d.top,left:d.left},"fast",function(){b._frameFocus(e,false)})}else{$(e.id).css({top:d.top,left:d.left})}},_frameResize:function(c,b){$(c.id).css({width:b.width,height:b.height});c.screen_location.width=b.width;c.screen_location.height=b.height},_frameGrid:function(d,b,c){d.grid_location=b;this._frameOffset(d,this._toPixel(b),c);d.grid_rank=this._locationRank(b)},_frameScreen:function(c){var b=c.screen_location;return{top:b.top,left:b.left,width:b.width,height:b.height}},_template:function(){return'<div class="galaxy-frame"></div>'},_templateFrame:function(c,b){if(!b){b=""}return'<div id="'+c+'" class="frame corner"><div class="f-header corner"><span class="f-title">'+b+'</span><span class="f-icon f-close fa fa-trash-o"></span><span class="f-icon f-pin fa fa-thumb-tack"></span></div><div class="f-content"><div class="f-cover"></div></div><span class="f-resize f-icon corner fa fa-resize-full"></span></div>'},_templateFrameUrl:function(e,d,b){if(b.indexOf("?")==-1){b+="?"}else{b+="&"}b+="widget=True";var c=$(this._templateFrame(e,d));c.find(".f-content").append('<iframe scrolling="auto" class="f-iframe" src="'+b+'"></iframe>');return c},_templateShadow:function(b){return'<div id="'+b+'" class="frame-shadow corner"></div>'},_templateBackground:function(){return'<div class="frame-background"></div>'},_templateMenu:function(){return'<div class="frame-scroll-up frame-menu fa fa-chevron-up fa-2x"></div><div class="frame-scroll-down frame-menu fa fa-chevron-down fa-2x"></div>'}});return{View:a}}); \ No newline at end of file +define([],function(){var a=Backbone.View.extend({options:{frame:{cols:6,rows:3},rows:1000,cell:130,margin:5,scroll:5,top_min:40,frame_max:9,visible:true,onchange:null},cols:0,top:0,top_max:0,frame_z:0,frame_counter:0,frame_counter_id:0,frame_list:[],frame_shadow:null,visible:null,initialize:function(c){var b=this;if(c){this.options=_.defaults(c,this.options)}this.visible=this.options.visible;this.top=this.top_max=this.options.top_min;this.setElement(this._template());$(this.el).append(this._templateBackground());$(this.el).append(this._templateMenu());$(this.el_main).append($(this.el));var d="#frame-shadow";$(this.el).append(this._templateShadow(d.substring(1)));this.frame_shadow={id:d,screen_location:{},grid_location:{},grid_rank:null,grid_lock:false};this._frameResize(this.frame_shadow,{width:0,height:0});this.frame_list[d]=this.frame_shadow;this._panelRefresh();if(!this.visible){this.hide()}else{this.show()}var b=this;$(window).resize(function(){if(b.visible){b._panelRefresh()}})},add:function(c){var f={title:"",content:null,target:"",type:null};if(c){c=_.defaults(c,f)}else{c=f}if(!c.content){return}if(this.frame_counter>=this.options.frame_max){alert("You have reached the maximum number of allowed frames ("+this.options.frame_max+").");return}var d="#frame-"+(this.frame_counter_id++);if($(d).length!==0){alert("This frame already exists. This page might contain multiple frame managers.");return}this.top=this.options.top_min;var e=null;if(c.type==="url"){e=$(this._templateFrameUrl(d.substring(1),c.title,c.content))}else{if(c.type==="other"){e=$(this._templateFrame(d.substring(1),c.title));var b=e.find(".f-content");if(_.isFunction(c.content)){c.content(b)}else{b.append(c.content)}}}$(this.el).append(e);var g={id:d,screen_location:{},grid_location:{},grid_rank:null,grid_lock:false};c.width=this._toPixelCoord("width",this.options.frame.cols);c.height=this._toPixelCoord("height",this.options.frame.rows);this.frame_z=parseInt($(g.id).css("z-index"));this.frame_list[d]=g;this.frame_counter++;this._frameResize(g,{width:c.width,height:c.height});this._frameInsert(g,{top:0,left:0},true);if(!this.visible){this.show()}},show:function(){this.visible=true;this.$el.find(".frame").fadeIn("fast");this.$el.find(this.frame_shadow.id).hide();this.$el.find(".frame-background").show();this._panelRefresh();this._menuRefresh()},hide:function(){if(this.event.type!==null){return}this.visible=false;this.$el.find(".frame").fadeOut("fast");this.$el.find(".frame-background").hide();this.$el.find(".frame-menu").hide();this._menuRefresh()},length:function(){return this.frame_counter},setOnChange:function(b){this.options.onchange=b},event:{type:null,target:null,xy:null},events:{mousemove:"_eventFrameMouseMove",mouseup:"_eventFrameMouseUp",mouseleave:"_eventFrameMouseUp",mousewheel:"_eventPanelScroll",DOMMouseScroll:"_eventPanelScroll","mousedown .frame":"_eventFrameMouseDown","mousedown .frame-background":"_eventHide","mousedown .frame-scroll-up":"_eventPanelScroll_up","mousedown .frame-scroll-down":"_eventPanelScroll_down","mousedown .f-close":"_eventFrameClose","mousedown .f-pin":"_eventFrameLock"},_eventFrameMouseDown:function(b){if(this.event.type!==null){return}if($(b.target).hasClass("f-header")||$(b.target).hasClass("f-title")){this.event.type="drag"}if($(b.target).hasClass("f-resize")){this.event.type="resize"}if(this.event.type===null){return}b.preventDefault();this.event.target=this._frameIdentify(b.target);if(this.event.target.grid_lock){this.event.type=null;return}this.event.xy={x:b.originalEvent.pageX,y:b.originalEvent.pageY};this._frameDragStart(this.event.target)},_eventFrameMouseMove:function(h){if(this.event.type!="drag"&&this.event.type!="resize"){return}var f={x:h.originalEvent.pageX,y:h.originalEvent.pageY};var c={x:f.x-this.event.xy.x,y:f.y-this.event.xy.y};this.event.xy=f;var g=this._frameScreen(this.event.target);if(this.event.type=="resize"){g.width+=c.x;g.height+=c.y;var d=this.options.cell-this.options.margin-1;g.width=Math.max(g.width,d);g.height=Math.max(g.height,d);this._frameResize(this.event.target,g);g.width=this._toGridCoord("width",g.width)+1;g.height=this._toGridCoord("height",g.height)+1;g.width=this._toPixelCoord("width",g.width);g.height=this._toPixelCoord("height",g.height);this._frameResize(this.frame_shadow,g);this._frameInsert(this.frame_shadow,{top:this._toGridCoord("top",g.top),left:this._toGridCoord("left",g.left)})}if(this.event.type=="drag"){g.left+=c.x;g.top+=c.y;this._frameOffset(this.event.target,g);var b={top:this._toGridCoord("top",g.top),left:this._toGridCoord("left",g.left)};if(b.left!==0){b.left++}this._frameInsert(this.frame_shadow,b)}},_eventFrameMouseUp:function(b){if(this.event.type!="drag"&&this.event.type!="resize"){return}this._frameDragStop(this.event.target);this.event.type=null},_eventFrameClose:function(c){if(this.event.type!==null){return}c.preventDefault();var d=this._frameIdentify(c.target);var b=this;$(d.id).fadeOut("fast",function(){$(d.id).remove();delete b.frame_list[d.id];b.frame_counter--;b._panelRefresh(true);b._panelAnimationComplete();if(b.visible&&b.frame_counter==0){b.hide()}})},_eventFrameLock:function(b){if(this.event.type!==null){return}b.preventDefault();var c=this._frameIdentify(b.target);if(c.grid_lock){c.grid_lock=false;$(c.id).find(".f-pin").removeClass("toggle");$(c.id).find(".f-header").removeClass("f-not-allowed");$(c.id).find(".f-title").removeClass("f-not-allowed");$(c.id).find(".f-resize").show();$(c.id).find(".f-close").show()}else{c.grid_lock=true;$(c.id).find(".f-pin").addClass("toggle");$(c.id).find(".f-header").addClass("f-not-allowed");$(c.id).find(".f-title").addClass("f-not-allowed");$(c.id).find(".f-resize").hide();$(c.id).find(".f-close").hide()}},_eventHide:function(b){if(this.event.type!==null){return}this.hide()},_eventPanelScroll:function(b){if(this.event.type!==null||!this.visible){return}var c=$(b.srcElement).parents(".frame");if(c.length!==0){b.stopPropagation();return}b.preventDefault();var d=b.originalEvent.detail?b.originalEvent.detail:b.originalEvent.wheelDelta/-3;this._panelScroll(d)},_eventPanelScroll_up:function(b){if(this.event.type!==null){return}b.preventDefault();this._panelScroll(-this.options.scroll)},_eventPanelScroll_down:function(b){if(this.event.type!==null){return}b.preventDefault();this._panelScroll(this.options.scroll)},_frameIdentify:function(b){return this.frame_list["#"+$(b).closest(".frame").attr("id")]},_frameDragStart:function(c){this._frameFocus(c,true);var b=this._frameScreen(c);this._frameResize(this.frame_shadow,b);this._frameGrid(this.frame_shadow,c.grid_location);c.grid_location=null;$(this.frame_shadow.id).show();$(".f-cover").show()},_frameDragStop:function(c){this._frameFocus(c,false);var b=this._frameScreen(this.frame_shadow);this._frameResize(c,b);this._frameGrid(c,this.frame_shadow.grid_location,true);this.frame_shadow.grid_location=null;$(this.frame_shadow.id).hide();$(".f-cover").hide();this._panelAnimationComplete()},_toGridCoord:function(d,c){var b=(d=="width"||d=="height")?1:-1;if(d=="top"){c-=this.top}return parseInt((c+b*this.options.margin)/this.options.cell,10)},_toPixelCoord:function(d,e){var b=(d=="width"||d=="height")?1:-1;var c=(e*this.options.cell)-b*this.options.margin;if(d=="top"){c+=this.top}return c},_toGrid:function(b){return{top:this._toGridCoord("top",b.top),left:this._toGridCoord("left",b.left),width:this._toGridCoord("width",b.width),height:this._toGridCoord("height",b.height)}},_toPixel:function(b){return{top:this._toPixelCoord("top",b.top),left:this._toPixelCoord("left",b.left),width:this._toPixelCoord("width",b.width),height:this._toPixelCoord("height",b.height)}},_isCollision:function(d){function b(g,f){return !(g.left>f.left+f.width-1||g.left+g.width-1<f.left||g.top>f.top+f.height-1||g.top+g.height-1<f.top)}for(var c in this.frame_list){var e=this.frame_list[c];if(e.grid_location===null){continue}if(b(d,e.grid_location)){return true}}return false},_locationRank:function(b){return(b.top*this.cols)+b.left},_menuRefresh:function(){if(this.visible){if(this.top==this.options.top_min){$(".frame-scroll-up").hide()}else{$(".frame-scroll-up").show()}if(this.top==this.top_max){$(".frame-scroll-down").hide()}else{$(".frame-scroll-down").show()}}if(this.options.onchange){this.options.onchange()}},_panelAnimationComplete:function(){var b=this;$(".frame").promise().done(function(){b._panelScroll(0,true)})},_panelRefresh:function(b){this.cols=parseInt($(window).width()/this.options.cell,10)+1;this._frameInsert(null,null,b)},_panelScroll:function(g,b){var d=this.top-this.options.scroll*g;d=Math.max(d,this.top_max);d=Math.min(d,this.options.top_min);if(this.top!=d){for(var c in this.frame_list){var f=this.frame_list[c];if(f.grid_location!==null){var e={top:f.screen_location.top-(this.top-d),left:f.screen_location.left};this._frameOffset(f,e,b)}}this.top=d}this._menuRefresh()},_frameInsert:function(h,b,d){var c=[];if(h){h.grid_location=null;c.push([h,this._locationRank(b)])}var e=null;for(e in this.frame_list){var g=this.frame_list[e];if(g.grid_location!==null&&!g.grid_lock){g.grid_location=null;c.push([g,g.grid_rank])}}c.sort(function(k,f){var m=k[1];var l=f[1];return m<l?-1:(m>l?1:0)});for(e=0;e<c.length;e++){this._framePlace(c[e][0],d)}this.top_max=0;for(var e in this.frame_list){var h=this.frame_list[e];if(h.grid_location!==null){this.top_max=Math.max(this.top_max,h.grid_location.top+h.grid_location.height)}}this.top_max=$(window).height()-this.top_max*this.options.cell-2*this.options.margin;this.top_max=Math.min(this.top_max,this.options.top_min);this._menuRefresh()},_framePlace:function(h,c){h.grid_location=null;var f=this._toGrid(this._frameScreen(h));var b=false;for(var e=0;e<this.options.rows;e++){for(var d=0;d<Math.max(1,this.cols-f.width);d++){f.top=e;f.left=d;if(!this._isCollision(f)){b=true;break}}if(b){break}}if(b){this._frameGrid(h,f,c)}else{console.log("Grid dimensions exceeded.")}},_frameFocus:function(d,b){var c=this.frame_z+(b?1:0);$(d.id).css("z-index",c)},_frameOffset:function(e,d,c){e.screen_location.left=d.left;e.screen_location.top=d.top;if(c){this._frameFocus(e,true);var b=this;$(e.id).animate({top:d.top,left:d.left},"fast",function(){b._frameFocus(e,false)})}else{$(e.id).css({top:d.top,left:d.left})}},_frameResize:function(c,b){$(c.id).css({width:b.width,height:b.height});c.screen_location.width=b.width;c.screen_location.height=b.height},_frameGrid:function(d,b,c){d.grid_location=b;this._frameOffset(d,this._toPixel(b),c);d.grid_rank=this._locationRank(b)},_frameScreen:function(c){var b=c.screen_location;return{top:b.top,left:b.left,width:b.width,height:b.height}},_template:function(){return'<div class="galaxy-frame"></div>'},_templateFrame:function(c,b){if(!b){b=""}return'<div id="'+c+'" class="frame corner"><div class="f-header corner"><span class="f-title">'+b+'</span><span class="f-icon f-close fa fa-trash-o"></span><span class="f-icon f-pin fa fa-thumb-tack"></span></div><div class="f-content"><div class="f-cover"></div></div><span class="f-resize f-icon corner fa fa-expand"></span></div>'},_templateFrameUrl:function(e,d,b){if(b.indexOf("?")==-1){b+="?"}else{b+="&"}b+="widget=True";var c=$(this._templateFrame(e,d));c.find(".f-content").append('<iframe scrolling="auto" class="f-iframe" src="'+b+'"></iframe>');return c},_templateShadow:function(b){return'<div id="'+b+'" class="frame-shadow corner"></div>'},_templateBackground:function(){return'<div class="frame-background"></div>'},_templateMenu:function(){return'<div class="frame-scroll-up frame-menu fa fa-chevron-up fa-2x"></div><div class="frame-scroll-down frame-menu fa fa-chevron-down fa-2x"></div>'}});return{View:a}}); \ No newline at end of file Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: guerler: ToolForm: Fix typo
by commits-noreply＠bitbucket.org 09 Dec '14

09 Dec '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/da7372555da0/ Changeset: da7372555da0 User: guerler Date: 2014-12-10 08:38:16+00:00 Summary: ToolForm: Fix typo Affected #: 3 files diff -r dae2fd928357c019b33db953fd840eab8512a1a3 -r da7372555da025bdc48c1a00278e282f200b2fc2 client/galaxy/scripts/mvc/tools/tools-form.js --- a/client/galaxy/scripts/mvc/tools/tools-form.js +++ b/client/galaxy/scripts/mvc/tools/tools-form.js @@ -122,7 +122,7 @@ // notification self.message.update({ status : 'success', - message : 'Now you are using using \'' + self.options.name + '\' version ' + self.options.version + '.', + message : 'Now you are using \'' + self.options.name + '\' version ' + self.options.version + '.', persistent : false }); diff -r dae2fd928357c019b33db953fd840eab8512a1a3 -r da7372555da025bdc48c1a00278e282f200b2fc2 static/scripts/mvc/tools/tools-form.js --- a/static/scripts/mvc/tools/tools-form.js +++ b/static/scripts/mvc/tools/tools-form.js @@ -122,7 +122,7 @@ // notification self.message.update({ status : 'success', - message : 'Now you are using using \'' + self.options.name + '\' version ' + self.options.version + '.', + message : 'Now you are using \'' + self.options.name + '\' version ' + self.options.version + '.', persistent : false }); diff -r dae2fd928357c019b33db953fd840eab8512a1a3 -r da7372555da025bdc48c1a00278e282f200b2fc2 static/scripts/packed/mvc/tools/tools-form.js --- a/static/scripts/packed/mvc/tools/tools-form.js +++ b/static/scripts/packed/mvc/tools/tools-form.js @@ -1,1 +1,1 @@ -define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree","mvc/tools/tools-jobs"],function(i,j,h,m,k,a,e,d,f,l,c,g){var b=Backbone.View.extend({container:"body",initialize:function(o){console.debug(o);var n=this;var p=parent.Galaxy;if(p&&p.modal){this.modal=p.modal}else{this.modal=new m.Modal.View()}if(p&&p.currUser){this.is_admin=p.currUser.get("is_admin")}else{this.is_admin=false}this.options=o;this.deferred=new j();this.setElement("<div/>");$(this.container).append(this.$el);this._buildForm()},reciept:function(n){$(this.container).empty();$(this.container).append(n)},reset:function(){for(var n in this.element_list){this.element_list[n].reset()}},rebuild:function(){this.tree.refresh();console.debug("tools-form::rebuild() - Rebuilding data structures.")},refresh:function(){if(this.is_dynamic){var n=this;this.deferred.reset();this.deferred.execute(function(){n._updateModel()})}},_buildModel:function(){var n=this;var o=galaxy_config.root+"api/tools/"+this.options.id+"/build?";if(this.options.job_id){o+="job_id="+this.options.job_id}else{if(this.options.dataset_id){o+="dataset_id="+this.options.dataset_id}else{o+="tool_version="+this.options.version+"&";var q=top.location.href;var r=q.indexOf("?");if(q.indexOf("tool_id=")!=-1&&r!==-1){o+=q.slice(r+1)}}}var p=this.deferred.register();i.request({type:"GET",url:o,success:function(s){n.options=s;n._buildForm();n.message.update({status:"success",message:"Now you are using using '"+n.options.name+"' version "+n.options.version+".",persistent:false});n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model ready.");console.debug(s)},error:function(s){n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model request failed.");console.debug(s);var t=s.error||"Uncaught error.";n.modal.show({title:"Tool cannot be executed",body:t,buttons:{Close:function(){n.modal.hide()}}})}})},_updateModel:function(){var n=this;var o=this.tree.finalize({data:function(s){if(s.values.length>0&&s.values[0]&&s.values[0].src==="hda"){return n.content.get({id:s.values[0].id,src:"hda"}).id_uncoded}return null}});console.debug("tools-form::_refreshForm() - Refreshing states.");console.debug(o);function r(v){for(var t in n.input_list){var u=n.field_list[t];var s=n.input_list[t];if(s.is_dynamic&&u.wait&&u.unwait){if(v){u.wait()}else{u.unwait()}}}}r(true);var q=this.deferred.register();var p=galaxy_config.root+"api/tools/"+this.options.id+"/build?tool_version="+this.options.version;i.request({type:"GET",url:p,data:o,success:function(s){n._updateForm(s);r(false);n.deferred.done(q);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(s)},error:function(s){n.deferred.done(q);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(s)}})},_updateForm:function(n){var o=this;this.tree.matchModel(n,function(q,u){var p=o.input_list[q];if(p&&p.options){if(!_.isEqual(p.options,u.options)){p.options=u.options;var v=o.field_list[q];if(v.update){var t=[];if((["data","data_collection","drill_down"]).indexOf(p.type)!=-1){t=p.options}else{for(var s in u.options){var r=u.options[s];if(r.length>2){t.push({label:r[0],value:r[1]})}}}v.update(t);v.trigger("change");console.debug("Updating options for "+q)}}}})},_buildForm:function(){var w=this;this.field_list={};this.input_list={};this.element_list={};this.tree=new c(this);this.job_handler=new g(this);this.content=new f(this);var x=this.options;this.message=new m.Message();var n="This tool requires ";for(var r in x.requirements){var v=x.requirements[r];n+=v.name;if(v.version){n+=" (Version "+v.version+")"}if(r<x.requirements.length-2){n+=", "}if(r==x.requirements.length-2){n+=" and "}}n+=".";var t=new m.ButtonIcon({icon:"fa-info-circle",tooltip:"Click to show/hide the tool requirements.",onclick:function(){if(!this.visible){this.visible=true;w.message.update({persistent:true,message:n,status:"warning"})}else{this.visible=false;w.message.update({message:""})}}});if(!x.requirements||x.requirements.length==0){t.$el.hide()}var p=new m.ButtonMenu({icon:"fa-cubes",title:"Versions",tooltip:"Click to view available versions."});if(x.versions&&x.versions.length>1){for(var r in x.versions){p.addMenu({title:x.versions[r],icon:"fa-cube",onclick:function(){x.id=x.id.replace(x.version,this.title);x.version=this.title;w.deferred.reset();w.deferred.execute(function(){w._buildModel()})}})}}else{p.$el.hide()}var s=new m.ButtonMenu({icon:"fa-gear",tooltip:"Click to view a list of options."});if(x.biostar_url){s.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/p/new/post/")}});s.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/t/"+x.id+"/")}})}s.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+x.id)}});if(this.is_admin){s.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+x.id+"/download"}})}this.section=new l.View(w,{inputs:x.inputs,cls:"ui-table-plain"});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new h.View({icon:"fa-wrench",title:"<b>"+x.name+"</b> "+x.description+" (Version "+x.version+")",cls:"ui-portlet-slim",operations:{requirements:t,menu:s,versions:p},buttons:{execute:new m.Button({icon:"fa-check",tooltip:"Execute: "+x.name,title:"Execute",cls:"btn btn-primary",floating:"clear",onclick:function(){w.job_handler.submit()}})}});this.$el.empty();this.$el.append(this.portlet.$el);if(x.help!=""){this.$el.append(d.help(x.help))}if(x.citations){var u=$("<div/>");var o=new k.ToolCitationCollection();o.tool_id=x.id;var q=new a.CitationListView({el:u,collection:o});q.render();o.fetch();this.$el.append(u)}this.portlet.append(this.message.$el,true);this.portlet.append(this.section.$el);this.rebuild();if(x.message){this.message.update({persistent:true,status:"warning",message:x.message})}}});return{View:b}}); \ No newline at end of file +define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree","mvc/tools/tools-jobs"],function(i,j,h,m,k,a,e,d,f,l,c,g){var b=Backbone.View.extend({container:"body",initialize:function(o){console.debug(o);var n=this;var p=parent.Galaxy;if(p&&p.modal){this.modal=p.modal}else{this.modal=new m.Modal.View()}if(p&&p.currUser){this.is_admin=p.currUser.get("is_admin")}else{this.is_admin=false}this.options=o;this.deferred=new j();this.setElement("<div/>");$(this.container).append(this.$el);this._buildForm()},reciept:function(n){$(this.container).empty();$(this.container).append(n)},reset:function(){for(var n in this.element_list){this.element_list[n].reset()}},rebuild:function(){this.tree.refresh();console.debug("tools-form::rebuild() - Rebuilding data structures.")},refresh:function(){if(this.is_dynamic){var n=this;this.deferred.reset();this.deferred.execute(function(){n._updateModel()})}},_buildModel:function(){var n=this;var o=galaxy_config.root+"api/tools/"+this.options.id+"/build?";if(this.options.job_id){o+="job_id="+this.options.job_id}else{if(this.options.dataset_id){o+="dataset_id="+this.options.dataset_id}else{o+="tool_version="+this.options.version+"&";var q=top.location.href;var r=q.indexOf("?");if(q.indexOf("tool_id=")!=-1&&r!==-1){o+=q.slice(r+1)}}}var p=this.deferred.register();i.request({type:"GET",url:o,success:function(s){n.options=s;n._buildForm();n.message.update({status:"success",message:"Now you are using '"+n.options.name+"' version "+n.options.version+".",persistent:false});n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model ready.");console.debug(s)},error:function(s){n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model request failed.");console.debug(s);var t=s.error||"Uncaught error.";n.modal.show({title:"Tool cannot be executed",body:t,buttons:{Close:function(){n.modal.hide()}}})}})},_updateModel:function(){var n=this;var o=this.tree.finalize({data:function(s){if(s.values.length>0&&s.values[0]&&s.values[0].src==="hda"){return n.content.get({id:s.values[0].id,src:"hda"}).id_uncoded}return null}});console.debug("tools-form::_refreshForm() - Refreshing states.");console.debug(o);function r(v){for(var t in n.input_list){var u=n.field_list[t];var s=n.input_list[t];if(s.is_dynamic&&u.wait&&u.unwait){if(v){u.wait()}else{u.unwait()}}}}r(true);var q=this.deferred.register();var p=galaxy_config.root+"api/tools/"+this.options.id+"/build?tool_version="+this.options.version;i.request({type:"GET",url:p,data:o,success:function(s){n._updateForm(s);r(false);n.deferred.done(q);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(s)},error:function(s){n.deferred.done(q);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(s)}})},_updateForm:function(n){var o=this;this.tree.matchModel(n,function(q,u){var p=o.input_list[q];if(p&&p.options){if(!_.isEqual(p.options,u.options)){p.options=u.options;var v=o.field_list[q];if(v.update){var t=[];if((["data","data_collection","drill_down"]).indexOf(p.type)!=-1){t=p.options}else{for(var s in u.options){var r=u.options[s];if(r.length>2){t.push({label:r[0],value:r[1]})}}}v.update(t);v.trigger("change");console.debug("Updating options for "+q)}}}})},_buildForm:function(){var w=this;this.field_list={};this.input_list={};this.element_list={};this.tree=new c(this);this.job_handler=new g(this);this.content=new f(this);var x=this.options;this.message=new m.Message();var n="This tool requires ";for(var r in x.requirements){var v=x.requirements[r];n+=v.name;if(v.version){n+=" (Version "+v.version+")"}if(r<x.requirements.length-2){n+=", "}if(r==x.requirements.length-2){n+=" and "}}n+=".";var t=new m.ButtonIcon({icon:"fa-info-circle",tooltip:"Click to show/hide the tool requirements.",onclick:function(){if(!this.visible){this.visible=true;w.message.update({persistent:true,message:n,status:"warning"})}else{this.visible=false;w.message.update({message:""})}}});if(!x.requirements||x.requirements.length==0){t.$el.hide()}var p=new m.ButtonMenu({icon:"fa-cubes",title:"Versions",tooltip:"Click to view available versions."});if(x.versions&&x.versions.length>1){for(var r in x.versions){p.addMenu({title:x.versions[r],icon:"fa-cube",onclick:function(){x.id=x.id.replace(x.version,this.title);x.version=this.title;w.deferred.reset();w.deferred.execute(function(){w._buildModel()})}})}}else{p.$el.hide()}var s=new m.ButtonMenu({icon:"fa-gear",tooltip:"Click to view a list of options."});if(x.biostar_url){s.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/p/new/post/")}});s.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/t/"+x.id+"/")}})}s.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+x.id)}});if(this.is_admin){s.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+x.id+"/download"}})}this.section=new l.View(w,{inputs:x.inputs,cls:"ui-table-plain"});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new h.View({icon:"fa-wrench",title:"<b>"+x.name+"</b> "+x.description+" (Version "+x.version+")",cls:"ui-portlet-slim",operations:{requirements:t,menu:s,versions:p},buttons:{execute:new m.Button({icon:"fa-check",tooltip:"Execute: "+x.name,title:"Execute",cls:"btn btn-primary",floating:"clear",onclick:function(){w.job_handler.submit()}})}});this.$el.empty();this.$el.append(this.portlet.$el);if(x.help!=""){this.$el.append(d.help(x.help))}if(x.citations){var u=$("<div/>");var o=new k.ToolCitationCollection();o.tool_id=x.id;var q=new a.CitationListView({el:u,collection:o});q.render();o.fetch();this.$el.append(u)}this.portlet.append(this.message.$el,true);this.portlet.append(this.section.$el);this.rebuild();if(x.message){this.message.update({persistent:true,status:"warning",message:x.message})}}});return{View:b}}); \ No newline at end of file Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: guerler: Ui: Allow portlet elements without paragraph wrapping
by commits-noreply＠bitbucket.org 09 Dec '14

09 Dec '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/dae2fd928357/ Changeset: dae2fd928357 User: guerler Date: 2014-12-10 08:35:36+00:00 Summary: Ui: Allow portlet elements without paragraph wrapping Affected #: 6 files diff -r 9b4153f9ccd58b46e8d98796a675e17ce7f3a1c5 -r dae2fd928357c019b33db953fd840eab8512a1a3 client/galaxy/scripts/mvc/tools/tools-form.js --- a/client/galaxy/scripts/mvc/tools/tools-form.js +++ b/client/galaxy/scripts/mvc/tools/tools-form.js @@ -469,7 +469,7 @@ } // append message - this.portlet.append(this.message.$el); + this.portlet.append(this.message.$el, true); // append tool section this.portlet.append(this.section.$el); diff -r 9b4153f9ccd58b46e8d98796a675e17ce7f3a1c5 -r dae2fd928357c019b33db953fd840eab8512a1a3 client/galaxy/scripts/mvc/ui/ui-portlet.js --- a/client/galaxy/scripts/mvc/ui/ui-portlet.js +++ b/client/galaxy/scripts/mvc/ui/ui-portlet.js @@ -89,10 +89,14 @@ }, // append - append: function($el) { - this.$content.append(Utils.wrap($el)); + append: function($el, unwrapped) { + if (unwrapped) { + this.$content.append($el); + } else { + this.$content.append(Utils.wrap($el)); + } }, - + // content content: function() { return this.$content; diff -r 9b4153f9ccd58b46e8d98796a675e17ce7f3a1c5 -r dae2fd928357c019b33db953fd840eab8512a1a3 static/scripts/mvc/tools/tools-form.js --- a/static/scripts/mvc/tools/tools-form.js +++ b/static/scripts/mvc/tools/tools-form.js @@ -469,7 +469,7 @@ } // append message - this.portlet.append(this.message.$el); + this.portlet.append(this.message.$el, true); // append tool section this.portlet.append(this.section.$el); diff -r 9b4153f9ccd58b46e8d98796a675e17ce7f3a1c5 -r dae2fd928357c019b33db953fd840eab8512a1a3 static/scripts/mvc/ui/ui-portlet.js --- a/static/scripts/mvc/ui/ui-portlet.js +++ b/static/scripts/mvc/ui/ui-portlet.js @@ -89,10 +89,14 @@ }, // append - append: function($el) { - this.$content.append(Utils.wrap($el)); + append: function($el, unwrapped) { + if (unwrapped) { + this.$content.append($el); + } else { + this.$content.append(Utils.wrap($el)); + } }, - + // content content: function() { return this.$content; diff -r 9b4153f9ccd58b46e8d98796a675e17ce7f3a1c5 -r dae2fd928357c019b33db953fd840eab8512a1a3 static/scripts/packed/mvc/tools/tools-form.js --- a/static/scripts/packed/mvc/tools/tools-form.js +++ b/static/scripts/packed/mvc/tools/tools-form.js @@ -1,1 +1,1 @@ -define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree","mvc/tools/tools-jobs"],function(i,j,h,m,k,a,e,d,f,l,c,g){var b=Backbone.View.extend({container:"body",initialize:function(o){console.debug(o);var n=this;var p=parent.Galaxy;if(p&&p.modal){this.modal=p.modal}else{this.modal=new m.Modal.View()}if(p&&p.currUser){this.is_admin=p.currUser.get("is_admin")}else{this.is_admin=false}this.options=o;this.deferred=new j();this.setElement("<div/>");$(this.container).append(this.$el);this._buildForm()},reciept:function(n){$(this.container).empty();$(this.container).append(n)},reset:function(){for(var n in this.element_list){this.element_list[n].reset()}},rebuild:function(){this.tree.refresh();console.debug("tools-form::rebuild() - Rebuilding data structures.")},refresh:function(){if(this.is_dynamic){var n=this;this.deferred.reset();this.deferred.execute(function(){n._updateModel()})}},_buildModel:function(){var n=this;var o=galaxy_config.root+"api/tools/"+this.options.id+"/build?";if(this.options.job_id){o+="job_id="+this.options.job_id}else{if(this.options.dataset_id){o+="dataset_id="+this.options.dataset_id}else{o+="tool_version="+this.options.version+"&";var q=top.location.href;var r=q.indexOf("?");if(q.indexOf("tool_id=")!=-1&&r!==-1){o+=q.slice(r+1)}}}var p=this.deferred.register();i.request({type:"GET",url:o,success:function(s){n.options=s;n._buildForm();n.message.update({status:"success",message:"Now you are using using '"+n.options.name+"' version "+n.options.version+".",persistent:false});n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model ready.");console.debug(s)},error:function(s){n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model request failed.");console.debug(s);var t=s.error||"Uncaught error.";n.modal.show({title:"Tool cannot be executed",body:t,buttons:{Close:function(){n.modal.hide()}}})}})},_updateModel:function(){var n=this;var o=this.tree.finalize({data:function(s){if(s.values.length>0&&s.values[0]&&s.values[0].src==="hda"){return n.content.get({id:s.values[0].id,src:"hda"}).id_uncoded}return null}});console.debug("tools-form::_refreshForm() - Refreshing states.");console.debug(o);function r(v){for(var t in n.input_list){var u=n.field_list[t];var s=n.input_list[t];if(s.is_dynamic&&u.wait&&u.unwait){if(v){u.wait()}else{u.unwait()}}}}r(true);var q=this.deferred.register();var p=galaxy_config.root+"api/tools/"+this.options.id+"/build?tool_version="+this.options.version;i.request({type:"GET",url:p,data:o,success:function(s){n._updateForm(s);r(false);n.deferred.done(q);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(s)},error:function(s){n.deferred.done(q);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(s)}})},_updateForm:function(n){var o=this;this.tree.matchModel(n,function(q,u){var p=o.input_list[q];if(p&&p.options){if(!_.isEqual(p.options,u.options)){p.options=u.options;var v=o.field_list[q];if(v.update){var t=[];if((["data","data_collection","drill_down"]).indexOf(p.type)!=-1){t=p.options}else{for(var s in u.options){var r=u.options[s];if(r.length>2){t.push({label:r[0],value:r[1]})}}}v.update(t);v.trigger("change");console.debug("Updating options for "+q)}}}})},_buildForm:function(){var w=this;this.field_list={};this.input_list={};this.element_list={};this.tree=new c(this);this.job_handler=new g(this);this.content=new f(this);var x=this.options;this.message=new m.Message();var n="This tool requires ";for(var r in x.requirements){var v=x.requirements[r];n+=v.name;if(v.version){n+=" (Version "+v.version+")"}if(r<x.requirements.length-2){n+=", "}if(r==x.requirements.length-2){n+=" and "}}n+=".";var t=new m.ButtonIcon({icon:"fa-info-circle",tooltip:"Click to show/hide the tool requirements.",onclick:function(){if(!this.visible){this.visible=true;w.message.update({persistent:true,message:n,status:"warning"})}else{this.visible=false;w.message.update({message:""})}}});if(!x.requirements||x.requirements.length==0){t.$el.hide()}var p=new m.ButtonMenu({icon:"fa-cubes",title:"Versions",tooltip:"Click to view available versions."});if(x.versions&&x.versions.length>1){for(var r in x.versions){p.addMenu({title:x.versions[r],icon:"fa-cube",onclick:function(){x.id=x.id.replace(x.version,this.title);x.version=this.title;w.deferred.reset();w.deferred.execute(function(){w._buildModel()})}})}}else{p.$el.hide()}var s=new m.ButtonMenu({icon:"fa-gear",tooltip:"Click to view a list of options."});if(x.biostar_url){s.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/p/new/post/")}});s.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/t/"+x.id+"/")}})}s.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+x.id)}});if(this.is_admin){s.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+x.id+"/download"}})}this.section=new l.View(w,{inputs:x.inputs,cls:"ui-table-plain"});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new h.View({icon:"fa-wrench",title:"<b>"+x.name+"</b> "+x.description+" (Version "+x.version+")",cls:"ui-portlet-slim",operations:{requirements:t,menu:s,versions:p},buttons:{execute:new m.Button({icon:"fa-check",tooltip:"Execute: "+x.name,title:"Execute",cls:"btn btn-primary",floating:"clear",onclick:function(){w.job_handler.submit()}})}});this.$el.empty();this.$el.append(this.portlet.$el);if(x.help!=""){this.$el.append(d.help(x.help))}if(x.citations){var u=$("<div/>");var o=new k.ToolCitationCollection();o.tool_id=x.id;var q=new a.CitationListView({el:u,collection:o});q.render();o.fetch();this.$el.append(u)}this.portlet.append(this.message.$el);this.portlet.append(this.section.$el);this.rebuild();if(x.message){this.message.update({persistent:true,status:"warning",message:x.message})}}});return{View:b}}); \ No newline at end of file +define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree","mvc/tools/tools-jobs"],function(i,j,h,m,k,a,e,d,f,l,c,g){var b=Backbone.View.extend({container:"body",initialize:function(o){console.debug(o);var n=this;var p=parent.Galaxy;if(p&&p.modal){this.modal=p.modal}else{this.modal=new m.Modal.View()}if(p&&p.currUser){this.is_admin=p.currUser.get("is_admin")}else{this.is_admin=false}this.options=o;this.deferred=new j();this.setElement("<div/>");$(this.container).append(this.$el);this._buildForm()},reciept:function(n){$(this.container).empty();$(this.container).append(n)},reset:function(){for(var n in this.element_list){this.element_list[n].reset()}},rebuild:function(){this.tree.refresh();console.debug("tools-form::rebuild() - Rebuilding data structures.")},refresh:function(){if(this.is_dynamic){var n=this;this.deferred.reset();this.deferred.execute(function(){n._updateModel()})}},_buildModel:function(){var n=this;var o=galaxy_config.root+"api/tools/"+this.options.id+"/build?";if(this.options.job_id){o+="job_id="+this.options.job_id}else{if(this.options.dataset_id){o+="dataset_id="+this.options.dataset_id}else{o+="tool_version="+this.options.version+"&";var q=top.location.href;var r=q.indexOf("?");if(q.indexOf("tool_id=")!=-1&&r!==-1){o+=q.slice(r+1)}}}var p=this.deferred.register();i.request({type:"GET",url:o,success:function(s){n.options=s;n._buildForm();n.message.update({status:"success",message:"Now you are using using '"+n.options.name+"' version "+n.options.version+".",persistent:false});n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model ready.");console.debug(s)},error:function(s){n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model request failed.");console.debug(s);var t=s.error||"Uncaught error.";n.modal.show({title:"Tool cannot be executed",body:t,buttons:{Close:function(){n.modal.hide()}}})}})},_updateModel:function(){var n=this;var o=this.tree.finalize({data:function(s){if(s.values.length>0&&s.values[0]&&s.values[0].src==="hda"){return n.content.get({id:s.values[0].id,src:"hda"}).id_uncoded}return null}});console.debug("tools-form::_refreshForm() - Refreshing states.");console.debug(o);function r(v){for(var t in n.input_list){var u=n.field_list[t];var s=n.input_list[t];if(s.is_dynamic&&u.wait&&u.unwait){if(v){u.wait()}else{u.unwait()}}}}r(true);var q=this.deferred.register();var p=galaxy_config.root+"api/tools/"+this.options.id+"/build?tool_version="+this.options.version;i.request({type:"GET",url:p,data:o,success:function(s){n._updateForm(s);r(false);n.deferred.done(q);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(s)},error:function(s){n.deferred.done(q);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(s)}})},_updateForm:function(n){var o=this;this.tree.matchModel(n,function(q,u){var p=o.input_list[q];if(p&&p.options){if(!_.isEqual(p.options,u.options)){p.options=u.options;var v=o.field_list[q];if(v.update){var t=[];if((["data","data_collection","drill_down"]).indexOf(p.type)!=-1){t=p.options}else{for(var s in u.options){var r=u.options[s];if(r.length>2){t.push({label:r[0],value:r[1]})}}}v.update(t);v.trigger("change");console.debug("Updating options for "+q)}}}})},_buildForm:function(){var w=this;this.field_list={};this.input_list={};this.element_list={};this.tree=new c(this);this.job_handler=new g(this);this.content=new f(this);var x=this.options;this.message=new m.Message();var n="This tool requires ";for(var r in x.requirements){var v=x.requirements[r];n+=v.name;if(v.version){n+=" (Version "+v.version+")"}if(r<x.requirements.length-2){n+=", "}if(r==x.requirements.length-2){n+=" and "}}n+=".";var t=new m.ButtonIcon({icon:"fa-info-circle",tooltip:"Click to show/hide the tool requirements.",onclick:function(){if(!this.visible){this.visible=true;w.message.update({persistent:true,message:n,status:"warning"})}else{this.visible=false;w.message.update({message:""})}}});if(!x.requirements||x.requirements.length==0){t.$el.hide()}var p=new m.ButtonMenu({icon:"fa-cubes",title:"Versions",tooltip:"Click to view available versions."});if(x.versions&&x.versions.length>1){for(var r in x.versions){p.addMenu({title:x.versions[r],icon:"fa-cube",onclick:function(){x.id=x.id.replace(x.version,this.title);x.version=this.title;w.deferred.reset();w.deferred.execute(function(){w._buildModel()})}})}}else{p.$el.hide()}var s=new m.ButtonMenu({icon:"fa-gear",tooltip:"Click to view a list of options."});if(x.biostar_url){s.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/p/new/post/")}});s.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/t/"+x.id+"/")}})}s.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+x.id)}});if(this.is_admin){s.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+x.id+"/download"}})}this.section=new l.View(w,{inputs:x.inputs,cls:"ui-table-plain"});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new h.View({icon:"fa-wrench",title:"<b>"+x.name+"</b> "+x.description+" (Version "+x.version+")",cls:"ui-portlet-slim",operations:{requirements:t,menu:s,versions:p},buttons:{execute:new m.Button({icon:"fa-check",tooltip:"Execute: "+x.name,title:"Execute",cls:"btn btn-primary",floating:"clear",onclick:function(){w.job_handler.submit()}})}});this.$el.empty();this.$el.append(this.portlet.$el);if(x.help!=""){this.$el.append(d.help(x.help))}if(x.citations){var u=$("<div/>");var o=new k.ToolCitationCollection();o.tool_id=x.id;var q=new a.CitationListView({el:u,collection:o});q.render();o.fetch();this.$el.append(u)}this.portlet.append(this.message.$el,true);this.portlet.append(this.section.$el);this.rebuild();if(x.message){this.message.update({persistent:true,status:"warning",message:x.message})}}});return{View:b}}); \ No newline at end of file diff -r 9b4153f9ccd58b46e8d98796a675e17ce7f3a1c5 -r dae2fd928357c019b33db953fd840eab8512a1a3 static/scripts/packed/mvc/ui/ui-portlet.js --- a/static/scripts/packed/mvc/ui/ui-portlet.js +++ b/static/scripts/packed/mvc/ui/ui-portlet.js @@ -1,1 +1,1 @@ -define(["utils/utils"],function(a){var b=Backbone.View.extend({visible:false,optionsDefault:{title:"",icon:"",buttons:null,body:null,scrollable:true,nopadding:false,operations:null,placement:"bottom",cls:"ui-portlet",operations_flt:"right"},$title:null,$content:null,$buttons:null,$operations:null,initialize:function(e){this.options=a.merge(e,this.optionsDefault);this.setElement(this._template(this.options));this.$content=this.$el.find("#content");this.$title=this.$el.find("#portlet-title-text");var d=this.$el.find("#portlet-content");if(!this.options.scrollable){if(this.options.title){d.addClass("no-scroll")}else{d.addClass("no-scroll-no-title")}}else{d.addClass("scroll")}if(this.options.nopadding){d.css("padding","0px");this.$content.css("padding","0px")}this.$buttons=$(this.el).find("#buttons");if(this.options.buttons){var c=this;$.each(this.options.buttons,function(f,g){g.$el.prop("id",f);c.$buttons.append(g.$el)})}else{this.$buttons.remove()}this.$operations=$(this.el).find("#operations");if(this.options.operations){var c=this;$.each(this.options.operations,function(f,g){g.$el.prop("id",f);c.$operations.append(g.$el)})}if(this.options.body){this.append(this.options.body)}},append:function(c){this.$content.append(a.wrap(c))},content:function(){return this.$content},show:function(){this.$el.fadeIn("fast");this.visible=true},hide:function(){this.$el.fadeOut("fast");this.visible=false},enableButton:function(c){this.$buttons.find("#"+c).prop("disabled",false)},disableButton:function(c){this.$buttons.find("#"+c).prop("disabled",true)},hideOperation:function(c){this.$operations.find("#"+c).hide()},showOperation:function(c){this.$operations.find("#"+c).show()},setOperation:function(e,d){var c=this.$operations.find("#"+e);c.off("click");c.on("click",d)},title:function(d){var c=this.$title;if(d){c.html(d)}return c.html()},_template:function(d){var c='<div id="'+d.id+'" class="'+d.cls+'">';if(d.title){c+='<div id="portlet-header" class="portlet-header"><div id="operations" style="float: '+d.operations_flt+';"></div><div class="portlet-title">';if(d.icon){c+='<i class="icon fa '+d.icon+'"> </i>'}c+='<span id="portlet-title-text" class="portlet-title-text">'+d.title+"</span></div></div>"}c+='<div id="portlet-content" class="portlet-content">';if(d.placement=="top"){c+='<div id="buttons" class="buttons"></div>'}c+='<div id="content" class="content"></div>';if(d.placement=="bottom"){c+='<div id="buttons" class="buttons"></div>'}c+="</div></div>";return c}});return{View:b}}); \ No newline at end of file +define(["utils/utils"],function(a){var b=Backbone.View.extend({visible:false,optionsDefault:{title:"",icon:"",buttons:null,body:null,scrollable:true,nopadding:false,operations:null,placement:"bottom",cls:"ui-portlet",operations_flt:"right"},$title:null,$content:null,$buttons:null,$operations:null,initialize:function(e){this.options=a.merge(e,this.optionsDefault);this.setElement(this._template(this.options));this.$content=this.$el.find("#content");this.$title=this.$el.find("#portlet-title-text");var d=this.$el.find("#portlet-content");if(!this.options.scrollable){if(this.options.title){d.addClass("no-scroll")}else{d.addClass("no-scroll-no-title")}}else{d.addClass("scroll")}if(this.options.nopadding){d.css("padding","0px");this.$content.css("padding","0px")}this.$buttons=$(this.el).find("#buttons");if(this.options.buttons){var c=this;$.each(this.options.buttons,function(f,g){g.$el.prop("id",f);c.$buttons.append(g.$el)})}else{this.$buttons.remove()}this.$operations=$(this.el).find("#operations");if(this.options.operations){var c=this;$.each(this.options.operations,function(f,g){g.$el.prop("id",f);c.$operations.append(g.$el)})}if(this.options.body){this.append(this.options.body)}},append:function(d,c){if(c){this.$content.append(d)}else{this.$content.append(a.wrap(d))}},content:function(){return this.$content},show:function(){this.$el.fadeIn("fast");this.visible=true},hide:function(){this.$el.fadeOut("fast");this.visible=false},enableButton:function(c){this.$buttons.find("#"+c).prop("disabled",false)},disableButton:function(c){this.$buttons.find("#"+c).prop("disabled",true)},hideOperation:function(c){this.$operations.find("#"+c).hide()},showOperation:function(c){this.$operations.find("#"+c).show()},setOperation:function(e,d){var c=this.$operations.find("#"+e);c.off("click");c.on("click",d)},title:function(d){var c=this.$title;if(d){c.html(d)}return c.html()},_template:function(d){var c='<div id="'+d.id+'" class="'+d.cls+'">';if(d.title){c+='<div id="portlet-header" class="portlet-header"><div id="operations" style="float: '+d.operations_flt+';"></div><div class="portlet-title">';if(d.icon){c+='<i class="icon fa '+d.icon+'"> </i>'}c+='<span id="portlet-title-text" class="portlet-title-text">'+d.title+"</span></div></div>"}c+='<div id="portlet-content" class="portlet-content">';if(d.placement=="top"){c+='<div id="buttons" class="buttons"></div>'}c+='<div id="content" class="content"></div>';if(d.placement=="bottom"){c+='<div id="buttons" class="buttons"></div>'}c+="</div></div>";return c}});return{View:b}}); \ No newline at end of file Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

1 0

commit/galaxy-central: guerler: ToolForm: Add tool requirement details
by commits-noreply＠bitbucket.org 09 Dec '14

09 Dec '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/9b4153f9ccd5/ Changeset: 9b4153f9ccd5 User: guerler Date: 2014-12-10 08:22:19+00:00 Summary: ToolForm: Add tool requirement details Affected #: 7 files diff -r 5bdce43378bddc43988616a16b3fdb055c315d52 -r 9b4153f9ccd58b46e8d98796a675e17ce7f3a1c5 client/galaxy/scripts/mvc/tools/tools-form.js --- a/client/galaxy/scripts/mvc/tools/tools-form.js +++ b/client/galaxy/scripts/mvc/tools/tools-form.js @@ -119,6 +119,13 @@ // build form self._buildForm(); + // notification + self.message.update({ + status : 'success', + message : 'Now you are using using \'' + self.options.name + '\' version ' + self.options.version + '.', + persistent : false + }); + // process completed self.deferred.done(process_id); @@ -282,11 +289,55 @@ // link model options var options = this.options; + // create message view + this.message = new Ui.Message(); + + // construct tool requirements message content + var requirements_message = 'This tool requires '; + for (var i in options.requirements) { + var req = options.requirements[i]; + requirements_message += req.name; + if (req.version) { + requirements_message += ' (Version ' + req.version + ')'; + } + if (i < options.requirements.length - 2) { + requirements_message += ', '; + } + if (i == options.requirements.length - 2) { + requirements_message += ' and '; + } + } + requirements_message += '.'; + + // button for version selection + var requirements_button = new Ui.ButtonIcon({ + icon : 'fa-info-circle', + tooltip : 'Click to show/hide the tool requirements.', + onclick : function() { + if (!this.visible) { + this.visible = true; + self.message.update({ + persistent : true, + message : requirements_message, + status : 'warning' + }); + } else { + this.visible = false; + self.message.update({ + message : '' + }); + } + } + }); + if (!options.requirements || options.requirements.length == 0) { + requirements_button.$el.hide(); + } + // button for version selection var versions_button = new Ui.ButtonMenu({ icon : 'fa-cubes', title : 'Versions', - tooltip : 'Click to see available versions.' + tooltip : 'Click to view available versions.' }); if (options.versions && options.versions.length > 1) { for (var i in options.versions) { @@ -311,7 +362,7 @@ // button menu var menu_button = new Ui.ButtonMenu({ icon : 'fa-gear', - tooltip : 'Click to see a list of options.' + tooltip : 'Click to view a list of options.' }); // configure button selection @@ -379,8 +430,9 @@ title : '<b>' + options.name + '</b> ' + options.description + ' (Version ' + options.version + ')', cls : 'ui-portlet-slim', operations: { - menu : menu_button, - versions : versions_button + requirements : requirements_button, + menu : menu_button, + versions : versions_button }, buttons: { execute : new Ui.Button({ @@ -417,20 +469,22 @@ } // append message - if (options.message) { - var message = new Ui.Message({ - persistent : true, - status : 'warning', - message : options.message - }); - this.portlet.append(message.$el); - } + this.portlet.append(this.message.$el); // append tool section this.portlet.append(this.section.$el); // rebuild the underlying data structure this.rebuild(); + + // show message if available in model + if (options.message) { + this.message.update({ + persistent : true, + status : 'warning', + message : options.message + }); + } } }); diff -r 5bdce43378bddc43988616a16b3fdb055c315d52 -r 9b4153f9ccd58b46e8d98796a675e17ce7f3a1c5 client/galaxy/scripts/mvc/ui/ui-misc.js --- a/client/galaxy/scripts/mvc/ui/ui-misc.js +++ b/client/galaxy/scripts/mvc/ui/ui-misc.js @@ -278,11 +278,15 @@ this.$el.find('.alert').append(options.message); this.$el.fadeIn(); - // check if message is persistent + // clear previous timeouts + if (this.timeout) { + window.clearTimeout(this.timeout); + } + + // set timeout if message is not persistent if (!options.persistent) { - // set timer var self = this; - window.setTimeout(function() { + this.timeout = window.setTimeout(function() { if (self.$el.is(':visible')) { self.$el.fadeOut(); } else { diff -r 5bdce43378bddc43988616a16b3fdb055c315d52 -r 9b4153f9ccd58b46e8d98796a675e17ce7f3a1c5 lib/galaxy/webapps/galaxy/api/tools.py --- a/lib/galaxy/webapps/galaxy/api/tools.py +++ b/lib/galaxy/webapps/galaxy/api/tools.py @@ -741,13 +741,23 @@ for t in tools: tool_versions.append(t.version) + ## add information with underlying requirements and their versions + tool_requirements = [] + if tool.requirements: + for requirement in tool.requirements: + tool_requirements.append({ + 'name' : requirement.name, + 'version' : requirement.version + }) + # add additional properties tool_model.update({ 'help' : tool_help, 'citations' : tool_citations, 'biostar_url' : trans.app.config.biostar_url, 'message' : tool_message, - 'versions' : tool_versions + 'versions' : tool_versions, + 'requirements' : tool_requirements }) # check for errors diff -r 5bdce43378bddc43988616a16b3fdb055c315d52 -r 9b4153f9ccd58b46e8d98796a675e17ce7f3a1c5 static/scripts/mvc/tools/tools-form.js --- a/static/scripts/mvc/tools/tools-form.js +++ b/static/scripts/mvc/tools/tools-form.js @@ -119,6 +119,13 @@ // build form self._buildForm(); + // notification + self.message.update({ + status : 'success', + message : 'Now you are using using \'' + self.options.name + '\' version ' + self.options.version + '.', + persistent : false + }); + // process completed self.deferred.done(process_id); @@ -282,11 +289,55 @@ // link model options var options = this.options; + // create message view + this.message = new Ui.Message(); + + // construct tool requirements message content + var requirements_message = 'This tool requires '; + for (var i in options.requirements) { + var req = options.requirements[i]; + requirements_message += req.name; + if (req.version) { + requirements_message += ' (Version ' + req.version + ')'; + } + if (i < options.requirements.length - 2) { + requirements_message += ', '; + } + if (i == options.requirements.length - 2) { + requirements_message += ' and '; + } + } + requirements_message += '.'; + + // button for version selection + var requirements_button = new Ui.ButtonIcon({ + icon : 'fa-info-circle', + tooltip : 'Click to show/hide the tool requirements.', + onclick : function() { + if (!this.visible) { + this.visible = true; + self.message.update({ + persistent : true, + message : requirements_message, + status : 'warning' + }); + } else { + this.visible = false; + self.message.update({ + message : '' + }); + } + } + }); + if (!options.requirements || options.requirements.length == 0) { + requirements_button.$el.hide(); + } + // button for version selection var versions_button = new Ui.ButtonMenu({ icon : 'fa-cubes', title : 'Versions', - tooltip : 'Click to see available versions.' + tooltip : 'Click to view available versions.' }); if (options.versions && options.versions.length > 1) { for (var i in options.versions) { @@ -311,7 +362,7 @@ // button menu var menu_button = new Ui.ButtonMenu({ icon : 'fa-gear', - tooltip : 'Click to see a list of options.' + tooltip : 'Click to view a list of options.' }); // configure button selection @@ -379,8 +430,9 @@ title : '<b>' + options.name + '</b> ' + options.description + ' (Version ' + options.version + ')', cls : 'ui-portlet-slim', operations: { - menu : menu_button, - versions : versions_button + requirements : requirements_button, + menu : menu_button, + versions : versions_button }, buttons: { execute : new Ui.Button({ @@ -417,20 +469,22 @@ } // append message - if (options.message) { - var message = new Ui.Message({ - persistent : true, - status : 'warning', - message : options.message - }); - this.portlet.append(message.$el); - } + this.portlet.append(this.message.$el); // append tool section this.portlet.append(this.section.$el); // rebuild the underlying data structure this.rebuild(); + + // show message if available in model + if (options.message) { + this.message.update({ + persistent : true, + status : 'warning', + message : options.message + }); + } } }); diff -r 5bdce43378bddc43988616a16b3fdb055c315d52 -r 9b4153f9ccd58b46e8d98796a675e17ce7f3a1c5 static/scripts/mvc/ui/ui-misc.js --- a/static/scripts/mvc/ui/ui-misc.js +++ b/static/scripts/mvc/ui/ui-misc.js @@ -278,11 +278,15 @@ this.$el.find('.alert').append(options.message); this.$el.fadeIn(); - // check if message is persistent + // clear previous timeouts + if (this.timeout) { + window.clearTimeout(this.timeout); + } + + // set timeout if message is not persistent if (!options.persistent) { - // set timer var self = this; - window.setTimeout(function() { + this.timeout = window.setTimeout(function() { if (self.$el.is(':visible')) { self.$el.fadeOut(); } else { diff -r 5bdce43378bddc43988616a16b3fdb055c315d52 -r 9b4153f9ccd58b46e8d98796a675e17ce7f3a1c5 static/scripts/packed/mvc/tools/tools-form.js --- a/static/scripts/packed/mvc/tools/tools-form.js +++ b/static/scripts/packed/mvc/tools/tools-form.js @@ -1,1 +1,1 @@ -define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree","mvc/tools/tools-jobs"],function(i,j,h,m,k,a,e,d,f,l,c,g){var b=Backbone.View.extend({container:"body",initialize:function(o){console.debug(o);var n=this;var p=parent.Galaxy;if(p&&p.modal){this.modal=p.modal}else{this.modal=new m.Modal.View()}if(p&&p.currUser){this.is_admin=p.currUser.get("is_admin")}else{this.is_admin=false}this.options=o;this.deferred=new j();this.setElement("<div/>");$(this.container).append(this.$el);this._buildForm()},reciept:function(n){$(this.container).empty();$(this.container).append(n)},reset:function(){for(var n in this.element_list){this.element_list[n].reset()}},rebuild:function(){this.tree.refresh();console.debug("tools-form::rebuild() - Rebuilding data structures.")},refresh:function(){if(this.is_dynamic){var n=this;this.deferred.reset();this.deferred.execute(function(){n._updateModel()})}},_buildModel:function(){var n=this;var o=galaxy_config.root+"api/tools/"+this.options.id+"/build?";if(this.options.job_id){o+="job_id="+this.options.job_id}else{if(this.options.dataset_id){o+="dataset_id="+this.options.dataset_id}else{o+="tool_version="+this.options.version+"&";var q=top.location.href;var r=q.indexOf("?");if(q.indexOf("tool_id=")!=-1&&r!==-1){o+=q.slice(r+1)}}}var p=this.deferred.register();i.request({type:"GET",url:o,success:function(s){n.options=s;n._buildForm();n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model ready.");console.debug(s)},error:function(s){n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model request failed.");console.debug(s);var t=s.error||"Uncaught error.";n.modal.show({title:"Tool cannot be executed",body:t,buttons:{Close:function(){n.modal.hide()}}})}})},_updateModel:function(){var n=this;var o=this.tree.finalize({data:function(s){if(s.values.length>0&&s.values[0]&&s.values[0].src==="hda"){return n.content.get({id:s.values[0].id,src:"hda"}).id_uncoded}return null}});console.debug("tools-form::_refreshForm() - Refreshing states.");console.debug(o);function r(v){for(var t in n.input_list){var u=n.field_list[t];var s=n.input_list[t];if(s.is_dynamic&&u.wait&&u.unwait){if(v){u.wait()}else{u.unwait()}}}}r(true);var q=this.deferred.register();var p=galaxy_config.root+"api/tools/"+this.options.id+"/build?tool_version="+this.options.version;i.request({type:"GET",url:p,data:o,success:function(s){n._updateForm(s);r(false);n.deferred.done(q);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(s)},error:function(s){n.deferred.done(q);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(s)}})},_updateForm:function(n){var o=this;this.tree.matchModel(n,function(q,u){var p=o.input_list[q];if(p&&p.options){if(!_.isEqual(p.options,u.options)){p.options=u.options;var v=o.field_list[q];if(v.update){var t=[];if((["data","data_collection","drill_down"]).indexOf(p.type)!=-1){t=p.options}else{for(var s in u.options){var r=u.options[s];if(r.length>2){t.push({label:r[0],value:r[1]})}}}v.update(t);v.trigger("change");console.debug("Updating options for "+q)}}}})},_buildForm:function(){var t=this;this.field_list={};this.input_list={};this.element_list={};this.tree=new c(this);this.job_handler=new g(this);this.content=new f(this);var v=this.options;var o=new m.ButtonMenu({icon:"fa-cubes",title:"Versions",tooltip:"Click to see available versions."});if(v.versions&&v.versions.length>1){for(var q in v.versions){o.addMenu({title:v.versions[q],icon:"fa-cube",onclick:function(){v.id=v.id.replace(v.version,this.title);v.version=this.title;t.deferred.reset();t.deferred.execute(function(){t._buildModel()})}})}}else{o.$el.hide()}var r=new m.ButtonMenu({icon:"fa-gear",tooltip:"Click to see a list of options."});if(v.biostar_url){r.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(v.biostar_url+"/p/new/post/")}});r.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(v.biostar_url+"/t/"+v.id+"/")}})}r.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+v.id)}});if(this.is_admin){r.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+v.id+"/download"}})}this.section=new l.View(t,{inputs:v.inputs,cls:"ui-table-plain"});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new h.View({icon:"fa-wrench",title:"<b>"+v.name+"</b> "+v.description+" (Version "+v.version+")",cls:"ui-portlet-slim",operations:{menu:r,versions:o},buttons:{execute:new m.Button({icon:"fa-check",tooltip:"Execute: "+v.name,title:"Execute",cls:"btn btn-primary",floating:"clear",onclick:function(){t.job_handler.submit()}})}});this.$el.empty();this.$el.append(this.portlet.$el);if(v.help!=""){this.$el.append(d.help(v.help))}if(v.citations){var s=$("<div/>");var n=new k.ToolCitationCollection();n.tool_id=v.id;var p=new a.CitationListView({el:s,collection:n});p.render();n.fetch();this.$el.append(s)}if(v.message){var u=new m.Message({persistent:true,status:"warning",message:v.message});this.portlet.append(u.$el)}this.portlet.append(this.section.$el);this.rebuild()}});return{View:b}}); \ No newline at end of file +define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree","mvc/tools/tools-jobs"],function(i,j,h,m,k,a,e,d,f,l,c,g){var b=Backbone.View.extend({container:"body",initialize:function(o){console.debug(o);var n=this;var p=parent.Galaxy;if(p&&p.modal){this.modal=p.modal}else{this.modal=new m.Modal.View()}if(p&&p.currUser){this.is_admin=p.currUser.get("is_admin")}else{this.is_admin=false}this.options=o;this.deferred=new j();this.setElement("<div/>");$(this.container).append(this.$el);this._buildForm()},reciept:function(n){$(this.container).empty();$(this.container).append(n)},reset:function(){for(var n in this.element_list){this.element_list[n].reset()}},rebuild:function(){this.tree.refresh();console.debug("tools-form::rebuild() - Rebuilding data structures.")},refresh:function(){if(this.is_dynamic){var n=this;this.deferred.reset();this.deferred.execute(function(){n._updateModel()})}},_buildModel:function(){var n=this;var o=galaxy_config.root+"api/tools/"+this.options.id+"/build?";if(this.options.job_id){o+="job_id="+this.options.job_id}else{if(this.options.dataset_id){o+="dataset_id="+this.options.dataset_id}else{o+="tool_version="+this.options.version+"&";var q=top.location.href;var r=q.indexOf("?");if(q.indexOf("tool_id=")!=-1&&r!==-1){o+=q.slice(r+1)}}}var p=this.deferred.register();i.request({type:"GET",url:o,success:function(s){n.options=s;n._buildForm();n.message.update({status:"success",message:"Now you are using using '"+n.options.name+"' version "+n.options.version+".",persistent:false});n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model ready.");console.debug(s)},error:function(s){n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model request failed.");console.debug(s);var t=s.error||"Uncaught error.";n.modal.show({title:"Tool cannot be executed",body:t,buttons:{Close:function(){n.modal.hide()}}})}})},_updateModel:function(){var n=this;var o=this.tree.finalize({data:function(s){if(s.values.length>0&&s.values[0]&&s.values[0].src==="hda"){return n.content.get({id:s.values[0].id,src:"hda"}).id_uncoded}return null}});console.debug("tools-form::_refreshForm() - Refreshing states.");console.debug(o);function r(v){for(var t in n.input_list){var u=n.field_list[t];var s=n.input_list[t];if(s.is_dynamic&&u.wait&&u.unwait){if(v){u.wait()}else{u.unwait()}}}}r(true);var q=this.deferred.register();var p=galaxy_config.root+"api/tools/"+this.options.id+"/build?tool_version="+this.options.version;i.request({type:"GET",url:p,data:o,success:function(s){n._updateForm(s);r(false);n.deferred.done(q);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(s)},error:function(s){n.deferred.done(q);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(s)}})},_updateForm:function(n){var o=this;this.tree.matchModel(n,function(q,u){var p=o.input_list[q];if(p&&p.options){if(!_.isEqual(p.options,u.options)){p.options=u.options;var v=o.field_list[q];if(v.update){var t=[];if((["data","data_collection","drill_down"]).indexOf(p.type)!=-1){t=p.options}else{for(var s in u.options){var r=u.options[s];if(r.length>2){t.push({label:r[0],value:r[1]})}}}v.update(t);v.trigger("change");console.debug("Updating options for "+q)}}}})},_buildForm:function(){var w=this;this.field_list={};this.input_list={};this.element_list={};this.tree=new c(this);this.job_handler=new g(this);this.content=new f(this);var x=this.options;this.message=new m.Message();var n="This tool requires ";for(var r in x.requirements){var v=x.requirements[r];n+=v.name;if(v.version){n+=" (Version "+v.version+")"}if(r<x.requirements.length-2){n+=", "}if(r==x.requirements.length-2){n+=" and "}}n+=".";var t=new m.ButtonIcon({icon:"fa-info-circle",tooltip:"Click to show/hide the tool requirements.",onclick:function(){if(!this.visible){this.visible=true;w.message.update({persistent:true,message:n,status:"warning"})}else{this.visible=false;w.message.update({message:""})}}});if(!x.requirements||x.requirements.length==0){t.$el.hide()}var p=new m.ButtonMenu({icon:"fa-cubes",title:"Versions",tooltip:"Click to view available versions."});if(x.versions&&x.versions.length>1){for(var r in x.versions){p.addMenu({title:x.versions[r],icon:"fa-cube",onclick:function(){x.id=x.id.replace(x.version,this.title);x.version=this.title;w.deferred.reset();w.deferred.execute(function(){w._buildModel()})}})}}else{p.$el.hide()}var s=new m.ButtonMenu({icon:"fa-gear",tooltip:"Click to view a list of options."});if(x.biostar_url){s.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/p/new/post/")}});s.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(x.biostar_url+"/t/"+x.id+"/")}})}s.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+x.id)}});if(this.is_admin){s.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+x.id+"/download"}})}this.section=new l.View(w,{inputs:x.inputs,cls:"ui-table-plain"});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new h.View({icon:"fa-wrench",title:"<b>"+x.name+"</b> "+x.description+" (Version "+x.version+")",cls:"ui-portlet-slim",operations:{requirements:t,menu:s,versions:p},buttons:{execute:new m.Button({icon:"fa-check",tooltip:"Execute: "+x.name,title:"Execute",cls:"btn btn-primary",floating:"clear",onclick:function(){w.job_handler.submit()}})}});this.$el.empty();this.$el.append(this.portlet.$el);if(x.help!=""){this.$el.append(d.help(x.help))}if(x.citations){var u=$("<div/>");var o=new k.ToolCitationCollection();o.tool_id=x.id;var q=new a.CitationListView({el:u,collection:o});q.render();o.fetch();this.$el.append(u)}this.portlet.append(this.message.$el);this.portlet.append(this.section.$el);this.rebuild();if(x.message){this.message.update({persistent:true,status:"warning",message:x.message})}}});return{View:b}}); \ No newline at end of file diff -r 5bdce43378bddc43988616a16b3fdb055c315d52 -r 9b4153f9ccd58b46e8d98796a675e17ce7f3a1c5 static/scripts/packed/mvc/ui/ui-misc.js --- a/static/scripts/packed/mvc/ui/ui-misc.js +++ b/static/scripts/packed/mvc/ui/ui-misc.js @@ -1,1 +1,1 @@ -define(["utils/utils","mvc/ui/ui-select-default","mvc/ui/ui-slider","mvc/ui/ui-options","mvc/ui/ui-drilldown","mvc/ui/ui-button-menu","mvc/ui/ui-modal"],function(k,b,e,o,l,q,m){var d=Backbone.View.extend({optionsDefault:{url:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options))},_template:function(r){return'<img class="ui-image '+r.cls+'" src="'+r.url+'"/>'}});var j=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options))},title:function(r){this.$el.html(r)},_template:function(r){return'<label class="ui-label '+r.cls+'">'+r.title+"</label>"},value:function(){return options.title}});var c=Backbone.View.extend({optionsDefault:{floating:"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).tooltip({title:r.tooltip,placement:"bottom"})},_template:function(r){return'<div><span class="fa '+r.icon+'" class="ui-icon"/> '+r.title+"</div>"}});var g=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button btn btn-default",icon:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).on("click",function(){$(".tooltip").hide();if(r.onclick){r.onclick()}});$(this.el).tooltip({title:r.tooltip,placement:"bottom"})},_template:function(r){var s='<button id="'+r.id+'" type="submit" style="float: '+r.floating+';" type="button" class="'+r.cls+'">';if(r.icon){s+='<i class="icon fa '+r.icon+'"></i> '}s+=r.title+"</button>";return s}});var h=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button-icon",icon:"",tooltip:"",onclick:null},initialize:function(s){this.options=k.merge(s,this.optionsDefault);this.setElement(this._template(this.options));this.$button=this.$el.find(".button");var r=this;$(this.el).on("click",function(){$(".tooltip").hide();if(s.onclick&&!r.disabled){s.onclick()}});$(this.el).tooltip({title:s.tooltip,placement:"bottom"})},disable:function(){this.$button.addClass("disabled");this.disabled=true},enable:function(){this.$button.removeClass("disabled");this.disabled=false},_template:function(r){var s="";if(r.title){s="width: auto;"}var t='<div id="'+r.id+'" style="float: '+r.floating+"; "+s+'" class="'+r.cls+'">';if(r.title){t+='<div class="button"><i class="icon fa '+r.icon+'"/> <span class="title">'+r.title+"</span></div>"}else{t+='<i class="icon fa '+r.icon+'"/>'}t+="</div>";return t}});var f=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).on("click",r.onclick)},_template:function(r){return'<div><a href="javascript:void(0)" class="ui-anchor '+r.cls+'">'+r.title+"</a></div>"}});var n=Backbone.View.extend({optionsDefault:{message:null,status:"info",persistent:false},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement("<div></div>");if(this.options.message){this.update(this.options)}},update:function(s){this.options=k.merge(s,this.optionsDefault);if(s.message!=""){this.$el.html(this._template(this.options));this.$el.find(".alert").append(s.message);this.$el.fadeIn();if(!s.persistent){var r=this;window.setTimeout(function(){if(r.$el.is(":visible")){r.$el.fadeOut()}else{r.$el.hide()}},3000)}}else{this.$el.fadeOut()}},_template:function(r){return'<div class="ui-message alert alert-'+r.status+'"/>'}});var a=Backbone.View.extend({optionsDefault:{onclick:null,searchword:""},initialize:function(s){this.options=k.merge(s,this.optionsDefault);this.setElement(this._template(this.options));var r=this;if(this.options.onclick){this.$el.on("submit",function(u){var t=r.$el.find("#search");r.options.onclick(t.val())})}},_template:function(r){return'<div class="ui-search"><form onsubmit="return false;"><input id="search" class="form-control input-sm" type="text" name="search" placeholder="Search..." value="'+r.searchword+'"><button type="submit" class="btn search-btn"><i class="fa fa-search"></i></button></form></div>'}});var i=Backbone.View.extend({optionsDefault:{type:"text",placeholder:"",disabled:false,visible:true,cls:"",area:false},initialize:function(s){this.options=k.merge(s,this.optionsDefault);this.setElement(this._template(this.options));if(this.options.value!==undefined){this.value(this.options.value)}if(this.options.disabled){this.$el.prop("disabled",true)}if(!this.options.visible){this.$el.hide()}var r=this;this.$el.on("input",function(){if(r.options.onchange){r.options.onchange(r.$el.val())}})},value:function(r){if(r!==undefined){this.$el.val(r)}return this.$el.val()},_template:function(r){if(r.area){return'<textarea id="'+r.id+'" class="ui-textarea '+r.cls+'"></textarea>'}else{return'<input id="'+r.id+'" type="'+r.type+'" value="'+r.value+'" placeholder="'+r.placeholder+'" class="ui-input '+r.cls+'">'}}});var p=Backbone.View.extend({initialize:function(r){this.options=r;this.setElement(this._template(this.options));if(this.options.value!==undefined){this.value(this.options.value)}},value:function(r){if(r!==undefined){this.$el.val(r)}return this.$el.val()},_template:function(r){return'<hidden id="'+r.id+'" value="'+r.value+'"/>'}});return{Anchor:f,Button:g,ButtonIcon:h,ButtonMenu:q,Icon:c,Image:d,Input:i,Label:j,Message:n,Modal:m,RadioButton:o.RadioButton,Checkbox:o.Checkbox,Radio:o.Radio,Searchbox:a,Select:b,Hidden:p,Slider:e,Drilldown:l}}); \ No newline at end of file +define(["utils/utils","mvc/ui/ui-select-default","mvc/ui/ui-slider","mvc/ui/ui-options","mvc/ui/ui-drilldown","mvc/ui/ui-button-menu","mvc/ui/ui-modal"],function(k,b,e,o,l,q,m){var d=Backbone.View.extend({optionsDefault:{url:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options))},_template:function(r){return'<img class="ui-image '+r.cls+'" src="'+r.url+'"/>'}});var j=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options))},title:function(r){this.$el.html(r)},_template:function(r){return'<label class="ui-label '+r.cls+'">'+r.title+"</label>"},value:function(){return options.title}});var c=Backbone.View.extend({optionsDefault:{floating:"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).tooltip({title:r.tooltip,placement:"bottom"})},_template:function(r){return'<div><span class="fa '+r.icon+'" class="ui-icon"/> '+r.title+"</div>"}});var g=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button btn btn-default",icon:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).on("click",function(){$(".tooltip").hide();if(r.onclick){r.onclick()}});$(this.el).tooltip({title:r.tooltip,placement:"bottom"})},_template:function(r){var s='<button id="'+r.id+'" type="submit" style="float: '+r.floating+';" type="button" class="'+r.cls+'">';if(r.icon){s+='<i class="icon fa '+r.icon+'"></i> '}s+=r.title+"</button>";return s}});var h=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button-icon",icon:"",tooltip:"",onclick:null},initialize:function(s){this.options=k.merge(s,this.optionsDefault);this.setElement(this._template(this.options));this.$button=this.$el.find(".button");var r=this;$(this.el).on("click",function(){$(".tooltip").hide();if(s.onclick&&!r.disabled){s.onclick()}});$(this.el).tooltip({title:s.tooltip,placement:"bottom"})},disable:function(){this.$button.addClass("disabled");this.disabled=true},enable:function(){this.$button.removeClass("disabled");this.disabled=false},_template:function(r){var s="";if(r.title){s="width: auto;"}var t='<div id="'+r.id+'" style="float: '+r.floating+"; "+s+'" class="'+r.cls+'">';if(r.title){t+='<div class="button"><i class="icon fa '+r.icon+'"/> <span class="title">'+r.title+"</span></div>"}else{t+='<i class="icon fa '+r.icon+'"/>'}t+="</div>";return t}});var f=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).on("click",r.onclick)},_template:function(r){return'<div><a href="javascript:void(0)" class="ui-anchor '+r.cls+'">'+r.title+"</a></div>"}});var n=Backbone.View.extend({optionsDefault:{message:null,status:"info",persistent:false},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement("<div></div>");if(this.options.message){this.update(this.options)}},update:function(s){this.options=k.merge(s,this.optionsDefault);if(s.message!=""){this.$el.html(this._template(this.options));this.$el.find(".alert").append(s.message);this.$el.fadeIn();if(this.timeout){window.clearTimeout(this.timeout)}if(!s.persistent){var r=this;this.timeout=window.setTimeout(function(){if(r.$el.is(":visible")){r.$el.fadeOut()}else{r.$el.hide()}},3000)}}else{this.$el.fadeOut()}},_template:function(r){return'<div class="ui-message alert alert-'+r.status+'"/>'}});var a=Backbone.View.extend({optionsDefault:{onclick:null,searchword:""},initialize:function(s){this.options=k.merge(s,this.optionsDefault);this.setElement(this._template(this.options));var r=this;if(this.options.onclick){this.$el.on("submit",function(u){var t=r.$el.find("#search");r.options.onclick(t.val())})}},_template:function(r){return'<div class="ui-search"><form onsubmit="return false;"><input id="search" class="form-control input-sm" type="text" name="search" placeholder="Search..." value="'+r.searchword+'"><button type="submit" class="btn search-btn"><i class="fa fa-search"></i></button></form></div>'}});var i=Backbone.View.extend({optionsDefault:{type:"text",placeholder:"",disabled:false,visible:true,cls:"",area:false},initialize:function(s){this.options=k.merge(s,this.optionsDefault);this.setElement(this._template(this.options));if(this.options.value!==undefined){this.value(this.options.value)}if(this.options.disabled){this.$el.prop("disabled",true)}if(!this.options.visible){this.$el.hide()}var r=this;this.$el.on("input",function(){if(r.options.onchange){r.options.onchange(r.$el.val())}})},value:function(r){if(r!==undefined){this.$el.val(r)}return this.$el.val()},_template:function(r){if(r.area){return'<textarea id="'+r.id+'" class="ui-textarea '+r.cls+'"></textarea>'}else{return'<input id="'+r.id+'" type="'+r.type+'" value="'+r.value+'" placeholder="'+r.placeholder+'" class="ui-input '+r.cls+'">'}}});var p=Backbone.View.extend({initialize:function(r){this.options=r;this.setElement(this._template(this.options));if(this.options.value!==undefined){this.value(this.options.value)}},value:function(r){if(r!==undefined){this.$el.val(r)}return this.$el.val()},_template:function(r){return'<hidden id="'+r.id+'" value="'+r.value+'"/>'}});return{Anchor:f,Button:g,ButtonIcon:h,ButtonMenu:q,Icon:c,Image:d,Input:i,Label:j,Message:n,Modal:m,RadioButton:o.RadioButton,Checkbox:o.Checkbox,Radio:o.Radio,Searchbox:a,Select:b,Hidden:p,Slider:e,Drilldown:l}}); \ No newline at end of file Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: guerler: Ui: Update Fontawesome, ToolForm: Add tool version handling
by commits-noreply＠bitbucket.org 09 Dec '14

09 Dec '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/5bdce43378bd/ Changeset: 5bdce43378bd User: guerler Date: 2014-12-10 06:54:26+00:00 Summary: Ui: Update Fontawesome, ToolForm: Add tool version handling Affected #: 28 files diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 client/galaxy/scripts/mvc/tools/tools-form.js --- a/client/galaxy/scripts/mvc/tools/tools-form.js +++ b/client/galaxy/scripts/mvc/tools/tools-form.js @@ -48,21 +48,12 @@ // add to main element $(this.container).append(this.$el); - // creates a tree/json structure from the input form - this.tree = new ToolTree(this); - - // creates the job handler - this.job_handler = new ToolJobs(this); - - // request history content and build form - this.content = new ToolContent(this); - // build this form - this._buildForm(options); + this._buildForm(); }, - // message - message: function($el) { + // reciept shows the final message usually upon successful job submission + reciept: function($el) { $(this.container).empty(); $(this.container).append($el); }, @@ -105,6 +96,7 @@ if (this.options.dataset_id) { model_url += 'dataset_id=' + this.options.dataset_id; } else { + model_url += 'tool_version=' + this.options.version + '&'; var loc = top.location.href; var pos = loc.indexOf('?'); if (loc.indexOf('tool_id=') != -1 && pos !== -1) { @@ -112,27 +104,47 @@ } } } - + + // register process + var process_id = this.deferred.register(); + // get initial model Utils.request({ type : 'GET', url : model_url, success : function(response) { // link model data update options - self.options = $.extend(self.options, response); - self.model = response; - self.inputs = response.inputs; + self.options = response; + + // build form + self._buildForm(); + + // process completed + self.deferred.done(process_id); // log success console.debug('tools-form::initialize() - Initial tool model ready.'); console.debug(response); - - // build form - self._buildForm(); }, error : function(response) { + // process completed + self.deferred.done(process_id); + + // log error console.debug('tools-form::initialize() - Initial tool model request failed.'); console.debug(response); + + // show error + var error_message = response.error || 'Uncaught error.'; + self.modal.show({ + title : 'Tool cannot be executed', + body : error_message, + buttons : { + 'Close' : function() { + self.modal.hide(); + } + } + }); } }); }, @@ -175,10 +187,13 @@ // register process var process_id = this.deferred.register(); + // build model url for request + var model_url = galaxy_config.root + 'api/tools/' + this.options.id + '/build?tool_version=' + this.options.version; + // post job Utils.request({ type : 'GET', - url : galaxy_config.root + 'api/tools/' + this.options.id + '/build', + url : model_url, data : current_state, success : function(response) { // rebuild form @@ -219,23 +234,18 @@ var field = self.field_list[input_id]; if (field.update) { var new_options = []; - switch (input.type) { - case 'data': - new_options = input.options; - break; - case 'drill_down': - new_options = input.options; - break; - default: - for (var i in node.options) { - var opt = node.options[i]; - if (opt.length > 2) { - new_options.push({ - 'label': opt[0], - 'value': opt[1] - }); - } + if ((['data', 'data_collection', 'drill_down']).indexOf(input.type) != -1) { + new_options = input.options; + } else { + for (var i in node.options) { + var opt = node.options[i]; + if (opt.length > 2) { + new_options.push({ + 'label': opt[0], + 'value': opt[1] + }); } + } } field.update(new_options); field.trigger('change'); @@ -247,7 +257,7 @@ }, // builds the tool form - _buildForm: function(options) { + _buildForm: function() { // link this var self = this; @@ -260,12 +270,46 @@ // reset input element list, which contains the dom elements of each input element (includes also the input field) this.element_list = {}; - // for now the initial tool model is parsed through the mako - this.model = options; - this.inputs = options.inputs; + // creates a tree/json data structure from the input form + this.tree = new ToolTree(this); + + // creates the job handler + this.job_handler = new ToolJobs(this); + + // request history content and build form + this.content = new ToolContent(this); + + // link model options + var options = this.options; + + // button for version selection + var versions_button = new Ui.ButtonMenu({ + icon : 'fa-cubes', + title : 'Versions', + tooltip : 'Click to see available versions.' + }); + if (options.versions && options.versions.length > 1) { + for (var i in options.versions) { + versions_button.addMenu({ + title : options.versions[i], + icon : 'fa-cube', + onclick : function() { + // here we update the tool version (some tools encode the version also in the id) + options.id = options.id.replace(options.version, this.title); + options.version = this.title; + + // rebuild the model and form + self.deferred.reset(); + self.deferred.execute(function(){self._buildModel()}); + } + }); + } + } else { + versions_button.$el.hide(); + } // button menu - var menu = new Ui.ButtonMenu({ + var menu_button = new Ui.ButtonMenu({ icon : 'fa-gear', tooltip : 'Click to see a list of options.' }); @@ -273,52 +317,52 @@ // configure button selection if(options.biostar_url) { // add question option - menu.addMenu({ + menu_button.addMenu({ icon : 'fa-question-circle', title : 'Question?', tooltip : 'Ask a question about this tool (Biostar)', onclick : function() { - window.open(self.options.biostar_url + '/p/new/post/'); + window.open(options.biostar_url + '/p/new/post/'); } }); // create search button - menu.addMenu({ + menu_button.addMenu({ icon : 'fa-search', title : 'Search', tooltip : 'Search help for this tool (Biostar)', onclick : function() { - window.open(self.options.biostar_url + '/t/' + self.options.id + '/'); + window.open(options.biostar_url + '/t/' + options.id + '/'); } }); }; // create share button - menu.addMenu({ + menu_button.addMenu({ icon : 'fa-share', title : 'Share', tooltip : 'Share this tool', onclick : function() { - prompt('Copy to clipboard: Ctrl+C, Enter', window.location.origin + galaxy_config.root + 'root?tool_id=' + self.options.id); + prompt('Copy to clipboard: Ctrl+C, Enter', window.location.origin + galaxy_config.root + 'root?tool_id=' + options.id); } }); // add admin operations if (this.is_admin) { // create download button - menu.addMenu({ + menu_button.addMenu({ icon : 'fa-download', title : 'Download', tooltip : 'Download this tool', onclick : function() { - window.location.href = galaxy_config.root + 'api/tools/' + self.options.id + '/download'; + window.location.href = galaxy_config.root + 'api/tools/' + options.id + '/download'; } }); } // create tool form section this.section = new ToolSection.View(self, { - inputs : this.inputs, + inputs : options.inputs, cls : 'ui-table-plain' }); @@ -332,15 +376,16 @@ // create portlet this.portlet = new Portlet.View({ icon : 'fa-wrench', - title : '<b>' + this.model.name + '</b> ' + this.model.description, + title : '<b>' + options.name + '</b> ' + options.description + ' (Version ' + options.version + ')', cls : 'ui-portlet-slim', operations: { - menu : menu + menu : menu_button, + versions : versions_button }, buttons: { execute : new Ui.Button({ icon : 'fa-check', - tooltip : 'Execute: ' + self.model.name, + tooltip : 'Execute: ' + options.name, title : 'Execute', cls : 'btn btn-primary', floating : 'clear', @@ -371,6 +416,16 @@ this.$el.append($citations); } + // append message + if (options.message) { + var message = new Ui.Message({ + persistent : true, + status : 'warning', + message : options.message + }); + this.portlet.append(message.$el); + } + // append tool section this.portlet.append(this.section.$el); diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 client/galaxy/scripts/mvc/tools/tools-jobs.js --- a/client/galaxy/scripts/mvc/tools/tools-jobs.js +++ b/client/galaxy/scripts/mvc/tools/tools-jobs.js @@ -4,12 +4,8 @@ define(['utils/utils', 'mvc/tools/tools-template'], function(Utils, ToolTemplate) { return Backbone.Model.extend({ // initialize - initialize: function(app, options) { - // link app + initialize: function(app) { this.app = app; - - // link options - this.options = Utils.merge(options, this.optionsDefault); }, /** Creates and submits a job request to the api @@ -20,8 +16,9 @@ // create job definition for submission to tools api var job_def = { - tool_id : this.app.options.id, - inputs : this.app.tree.finalize() + tool_id : this.app.options.id, + tool_version : this.app.options.version, + inputs : this.app.tree.finalize() } // reset @@ -46,7 +43,7 @@ data : job_def, success : function(response) { self.app.modal.hide(); - self.app.message(ToolTemplate.success(response)); + self.app.reciept(ToolTemplate.success(response)); self._refreshHdas(); }, error : function(response, response_full) { diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 client/galaxy/scripts/mvc/tools/tools-select-content.js --- a/client/galaxy/scripts/mvc/tools/tools-select-content.js +++ b/client/galaxy/scripts/mvc/tools/tools-select-content.js @@ -38,7 +38,7 @@ // error messages var extensions = options.extensions.toString(); if (extensions) { - extensions = extensions.replace(',', ', '); + extensions = extensions.replace(/,/g, ', '); var pos = extensions.lastIndexOf(', '); if (pos != -1) { extensions = extensions.substr(0, pos) + ' or ' + extensions.substr(pos+1); @@ -50,7 +50,7 @@ } var hdca_error = 'No dataset list available.'; if (extensions) { - hdca_error = 'No ' + extensions + ' dataset list available.'; + hdca_error = 'No ' + extensions + ' dataset collection available.'; } // add single dataset selector @@ -86,7 +86,7 @@ // add collection selector if (this.mode == 'single' || this.mode == 'collection') { - radio_buttons.push({icon: 'fa-folder-o', label : 'List of datasets', value : 'collection' }); + radio_buttons.push({icon: 'fa-folder-o', label : 'Dataset collection', value : 'collection' }); this.select_collection = new Ui.Select.View({ error_text : hdca_error, onchange : function() { diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 client/galaxy/scripts/mvc/tools/tools-tree.js --- a/client/galaxy/scripts/mvc/tools/tools-tree.js +++ b/client/galaxy/scripts/mvc/tools/tools-tree.js @@ -8,7 +8,6 @@ return Backbone.Model.extend({ // initialize initialize: function(app) { - // link app this.app = app; }, diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 client/galaxy/scripts/mvc/ui/ui-misc.js --- a/client/galaxy/scripts/mvc/ui/ui-misc.js +++ b/client/galaxy/scripts/mvc/ui/ui-misc.js @@ -248,9 +248,9 @@ var Message = Backbone.View.extend({ // options optionsDefault: { - message : '', - status : 'info', - persistent : false + message : null, + status : 'info', + persistent : false }, // initialize @@ -260,6 +260,11 @@ // create new element this.setElement('<div></div>'); + + // show initial message + if (this.options.message) { + this.update(this.options); + } }, // update diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 lib/galaxy/webapps/galaxy/api/tools.py --- a/lib/galaxy/webapps/galaxy/api/tools.py +++ b/lib/galaxy/webapps/galaxy/api/tools.py @@ -79,7 +79,12 @@ GET /api/tools/{tool_id}/build Returns a tool model including dynamic parameters and updated values, repeats block etc. """ - tool = self._get_tool( id ) + tool_id = urllib.unquote_plus( id ) + tool_version = kwd.get( 'tool_version', None ) + tool = self.app.toolbox.get_tool( tool_id, tool_version ) + if not tool: + trans.response.status = 500 + return { 'error': 'Could not find tool with id \'%s\'' % tool_id } return self._build_dict(trans, tool, kwd) @_future_expose_api @@ -128,7 +133,8 @@ # -- Execute tool. -- # Get tool. - tool = trans.app.toolbox.get_tool( payload[ 'tool_id' ] ) if 'tool_id' in payload else None + tool_version = payload.get( 'tool_version', None ) + tool = trans.app.toolbox.get_tool( payload[ 'tool_id' ] , tool_version ) if 'tool_id' in payload else None if not tool: trans.response.status = 404 return { "message": { "type": "error", "text" : trans.app.model.Dataset.conversion_messages.NO_TOOL } } @@ -219,9 +225,9 @@ # # -- Helper methods -- # - def _get_tool( self, id ): + def _get_tool( self, id, tool_version=None ): id = urllib.unquote_plus( id ) - tool = self.app.toolbox.get_tool( id ) + tool = self.app.toolbox.get_tool( id, tool_version ) if not tool: raise exceptions.ObjectNotFound("Could not find tool with id '%s'" % id) return tool @@ -728,50 +734,58 @@ tool_citations = False if tool.citations: tool_citations = True - + + # get tool versions + tool_versions = [] + tools = self.app.toolbox.get_loaded_tools_by_lineage(tool.id) + for t in tools: + tool_versions.append(t.version) + # add additional properties tool_model.update({ 'help' : tool_help, 'citations' : tool_citations, 'biostar_url' : trans.app.config.biostar_url, - 'message' : tool_message + 'message' : tool_message, + 'versions' : tool_versions }) - + + # check for errors + if 'error' in tool_message: + return tool_message + # return enriched tool model return tool_model - def _get_tool_components( self, trans, tool_id, tool_version=None, get_loaded_tools_by_lineage=False, set_selected=False ): - return self.get_toolbox().get_tool_components( tool_id, tool_version, get_loaded_tools_by_lineage, set_selected ) - def _compare_tool_version( self, trans, tool, job ): """ - Compares a tool version with the tool version from a job (from ToolRunne. + Compares a tool version with the tool version from a job (from ToolRunner). """ - id = job.tool_id - version = job.tool_version + tool_id = job.tool_id + tool_version = job.tool_version message = '' try: - select_field, tools, tool = self._get_tool_components( trans, id, tool_version=version, get_loaded_tools_by_lineage=False, set_selected=True ) + select_field, tools, tool = self.app.toolbox.get_tool_components( tool_id, tool_version=tool_version, get_loaded_tools_by_lineage=False, set_selected=True ) if tool is None: trans.response.status = 500 - return { 'error': 'This dataset was created by an obsolete tool (%s). Can\'t re-run.' % id } - if ( tool.id != id and tool.old_id != id ) or tool.version != version: - if tool.id == id: - if version == None: + return { 'error': 'This dataset was created by an obsolete tool (%s). Can\'t re-run.' % tool_id } + if ( tool.id != tool_id and tool.old_id != tool_id ) or tool.version != tool_version: + if tool.id == tool_id: + if tool_version == None: # for some reason jobs don't always keep track of the tool version. message = '' else: - message = 'This job was initially run with tool version "%s", which is currently not available. ' % version + message = 'This job was initially run with tool version "%s", which is currently not available. ' % tool_version if len( tools ) > 1: message += 'You can re-run the job with the selected tool or choose another derivation of the tool.' else: message += 'You can re-run the job with this tool version, which is a derivation of the original tool.' else: if len( tools ) > 1: - message = 'This job was initially run with tool version "%s", which is currently not available. ' % version + message = 'This job was initially run with tool version "%s", which is currently not available. ' % tool_version message += 'You can re-run the job with the selected tool or choose another derivation of the tool.' else: - message = 'This job was initially run with tool id "%s", version "%s", which is ' % ( id, version ) + message = 'This job was initially run with tool id "%s", version "%s", which is ' % ( tool_id, tool_version ) message += 'currently not available. You can re-run the job with this tool, which is a derivation of the original tool.' except Exception, error: trans.response.status = 500 diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/images/fonts/fontawesome-webfont.eot Binary file static/images/fonts/fontawesome-webfont.eot has changed diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/images/fonts/fontawesome-webfont.ttf Binary file static/images/fonts/fontawesome-webfont.ttf has changed diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/images/fonts/fontawesome-webfont.woff Binary file static/images/fonts/fontawesome-webfont.woff has changed diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/scripts/mvc/tools/tools-form.js --- a/static/scripts/mvc/tools/tools-form.js +++ b/static/scripts/mvc/tools/tools-form.js @@ -48,21 +48,12 @@ // add to main element $(this.container).append(this.$el); - // creates a tree/json structure from the input form - this.tree = new ToolTree(this); - - // creates the job handler - this.job_handler = new ToolJobs(this); - - // request history content and build form - this.content = new ToolContent(this); - // build this form - this._buildForm(options); + this._buildForm(); }, - // message - message: function($el) { + // reciept shows the final message usually upon successful job submission + reciept: function($el) { $(this.container).empty(); $(this.container).append($el); }, @@ -105,6 +96,7 @@ if (this.options.dataset_id) { model_url += 'dataset_id=' + this.options.dataset_id; } else { + model_url += 'tool_version=' + this.options.version + '&'; var loc = top.location.href; var pos = loc.indexOf('?'); if (loc.indexOf('tool_id=') != -1 && pos !== -1) { @@ -112,27 +104,47 @@ } } } - + + // register process + var process_id = this.deferred.register(); + // get initial model Utils.request({ type : 'GET', url : model_url, success : function(response) { // link model data update options - self.options = $.extend(self.options, response); - self.model = response; - self.inputs = response.inputs; + self.options = response; + + // build form + self._buildForm(); + + // process completed + self.deferred.done(process_id); // log success console.debug('tools-form::initialize() - Initial tool model ready.'); console.debug(response); - - // build form - self._buildForm(); }, error : function(response) { + // process completed + self.deferred.done(process_id); + + // log error console.debug('tools-form::initialize() - Initial tool model request failed.'); console.debug(response); + + // show error + var error_message = response.error || 'Uncaught error.'; + self.modal.show({ + title : 'Tool cannot be executed', + body : error_message, + buttons : { + 'Close' : function() { + self.modal.hide(); + } + } + }); } }); }, @@ -175,10 +187,13 @@ // register process var process_id = this.deferred.register(); + // build model url for request + var model_url = galaxy_config.root + 'api/tools/' + this.options.id + '/build?tool_version=' + this.options.version; + // post job Utils.request({ type : 'GET', - url : galaxy_config.root + 'api/tools/' + this.options.id + '/build', + url : model_url, data : current_state, success : function(response) { // rebuild form @@ -219,23 +234,18 @@ var field = self.field_list[input_id]; if (field.update) { var new_options = []; - switch (input.type) { - case 'data': - new_options = input.options; - break; - case 'drill_down': - new_options = input.options; - break; - default: - for (var i in node.options) { - var opt = node.options[i]; - if (opt.length > 2) { - new_options.push({ - 'label': opt[0], - 'value': opt[1] - }); - } + if ((['data', 'data_collection', 'drill_down']).indexOf(input.type) != -1) { + new_options = input.options; + } else { + for (var i in node.options) { + var opt = node.options[i]; + if (opt.length > 2) { + new_options.push({ + 'label': opt[0], + 'value': opt[1] + }); } + } } field.update(new_options); field.trigger('change'); @@ -247,7 +257,7 @@ }, // builds the tool form - _buildForm: function(options) { + _buildForm: function() { // link this var self = this; @@ -260,12 +270,46 @@ // reset input element list, which contains the dom elements of each input element (includes also the input field) this.element_list = {}; - // for now the initial tool model is parsed through the mako - this.model = options; - this.inputs = options.inputs; + // creates a tree/json data structure from the input form + this.tree = new ToolTree(this); + + // creates the job handler + this.job_handler = new ToolJobs(this); + + // request history content and build form + this.content = new ToolContent(this); + + // link model options + var options = this.options; + + // button for version selection + var versions_button = new Ui.ButtonMenu({ + icon : 'fa-cubes', + title : 'Versions', + tooltip : 'Click to see available versions.' + }); + if (options.versions && options.versions.length > 1) { + for (var i in options.versions) { + versions_button.addMenu({ + title : options.versions[i], + icon : 'fa-cube', + onclick : function() { + // here we update the tool version (some tools encode the version also in the id) + options.id = options.id.replace(options.version, this.title); + options.version = this.title; + + // rebuild the model and form + self.deferred.reset(); + self.deferred.execute(function(){self._buildModel()}); + } + }); + } + } else { + versions_button.$el.hide(); + } // button menu - var menu = new Ui.ButtonMenu({ + var menu_button = new Ui.ButtonMenu({ icon : 'fa-gear', tooltip : 'Click to see a list of options.' }); @@ -273,52 +317,52 @@ // configure button selection if(options.biostar_url) { // add question option - menu.addMenu({ + menu_button.addMenu({ icon : 'fa-question-circle', title : 'Question?', tooltip : 'Ask a question about this tool (Biostar)', onclick : function() { - window.open(self.options.biostar_url + '/p/new/post/'); + window.open(options.biostar_url + '/p/new/post/'); } }); // create search button - menu.addMenu({ + menu_button.addMenu({ icon : 'fa-search', title : 'Search', tooltip : 'Search help for this tool (Biostar)', onclick : function() { - window.open(self.options.biostar_url + '/t/' + self.options.id + '/'); + window.open(options.biostar_url + '/t/' + options.id + '/'); } }); }; // create share button - menu.addMenu({ + menu_button.addMenu({ icon : 'fa-share', title : 'Share', tooltip : 'Share this tool', onclick : function() { - prompt('Copy to clipboard: Ctrl+C, Enter', window.location.origin + galaxy_config.root + 'root?tool_id=' + self.options.id); + prompt('Copy to clipboard: Ctrl+C, Enter', window.location.origin + galaxy_config.root + 'root?tool_id=' + options.id); } }); // add admin operations if (this.is_admin) { // create download button - menu.addMenu({ + menu_button.addMenu({ icon : 'fa-download', title : 'Download', tooltip : 'Download this tool', onclick : function() { - window.location.href = galaxy_config.root + 'api/tools/' + self.options.id + '/download'; + window.location.href = galaxy_config.root + 'api/tools/' + options.id + '/download'; } }); } // create tool form section this.section = new ToolSection.View(self, { - inputs : this.inputs, + inputs : options.inputs, cls : 'ui-table-plain' }); @@ -332,15 +376,16 @@ // create portlet this.portlet = new Portlet.View({ icon : 'fa-wrench', - title : '<b>' + this.model.name + '</b> ' + this.model.description, + title : '<b>' + options.name + '</b> ' + options.description + ' (Version ' + options.version + ')', cls : 'ui-portlet-slim', operations: { - menu : menu + menu : menu_button, + versions : versions_button }, buttons: { execute : new Ui.Button({ icon : 'fa-check', - tooltip : 'Execute: ' + self.model.name, + tooltip : 'Execute: ' + options.name, title : 'Execute', cls : 'btn btn-primary', floating : 'clear', @@ -371,6 +416,16 @@ this.$el.append($citations); } + // append message + if (options.message) { + var message = new Ui.Message({ + persistent : true, + status : 'warning', + message : options.message + }); + this.portlet.append(message.$el); + } + // append tool section this.portlet.append(this.section.$el); diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/scripts/mvc/tools/tools-jobs.js --- a/static/scripts/mvc/tools/tools-jobs.js +++ b/static/scripts/mvc/tools/tools-jobs.js @@ -4,12 +4,8 @@ define(['utils/utils', 'mvc/tools/tools-template'], function(Utils, ToolTemplate) { return Backbone.Model.extend({ // initialize - initialize: function(app, options) { - // link app + initialize: function(app) { this.app = app; - - // link options - this.options = Utils.merge(options, this.optionsDefault); }, /** Creates and submits a job request to the api @@ -20,8 +16,9 @@ // create job definition for submission to tools api var job_def = { - tool_id : this.app.options.id, - inputs : this.app.tree.finalize() + tool_id : this.app.options.id, + tool_version : this.app.options.version, + inputs : this.app.tree.finalize() } // reset @@ -46,7 +43,7 @@ data : job_def, success : function(response) { self.app.modal.hide(); - self.app.message(ToolTemplate.success(response)); + self.app.reciept(ToolTemplate.success(response)); self._refreshHdas(); }, error : function(response, response_full) { diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/scripts/mvc/tools/tools-select-content.js --- a/static/scripts/mvc/tools/tools-select-content.js +++ b/static/scripts/mvc/tools/tools-select-content.js @@ -38,7 +38,7 @@ // error messages var extensions = options.extensions.toString(); if (extensions) { - extensions = extensions.replace(',', ', '); + extensions = extensions.replace(/,/g, ', '); var pos = extensions.lastIndexOf(', '); if (pos != -1) { extensions = extensions.substr(0, pos) + ' or ' + extensions.substr(pos+1); @@ -50,7 +50,7 @@ } var hdca_error = 'No dataset list available.'; if (extensions) { - hdca_error = 'No ' + extensions + ' dataset list available.'; + hdca_error = 'No ' + extensions + ' dataset collection available.'; } // add single dataset selector @@ -86,7 +86,7 @@ // add collection selector if (this.mode == 'single' || this.mode == 'collection') { - radio_buttons.push({icon: 'fa-folder-o', label : 'List of datasets', value : 'collection' }); + radio_buttons.push({icon: 'fa-folder-o', label : 'Dataset collection', value : 'collection' }); this.select_collection = new Ui.Select.View({ error_text : hdca_error, onchange : function() { diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/scripts/mvc/tools/tools-tree.js --- a/static/scripts/mvc/tools/tools-tree.js +++ b/static/scripts/mvc/tools/tools-tree.js @@ -8,7 +8,6 @@ return Backbone.Model.extend({ // initialize initialize: function(app) { - // link app this.app = app; }, diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/scripts/mvc/ui/ui-misc.js --- a/static/scripts/mvc/ui/ui-misc.js +++ b/static/scripts/mvc/ui/ui-misc.js @@ -248,9 +248,9 @@ var Message = Backbone.View.extend({ // options optionsDefault: { - message : '', - status : 'info', - persistent : false + message : null, + status : 'info', + persistent : false }, // initialize @@ -260,6 +260,11 @@ // create new element this.setElement('<div></div>'); + + // show initial message + if (this.options.message) { + this.update(this.options); + } }, // update diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/scripts/packed/mvc/tools/tools-form.js --- a/static/scripts/packed/mvc/tools/tools-form.js +++ b/static/scripts/packed/mvc/tools/tools-form.js @@ -1,1 +1,1 @@ -define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree","mvc/tools/tools-jobs"],function(i,j,h,m,k,a,e,d,f,l,c,g){var b=Backbone.View.extend({container:"body",initialize:function(o){console.debug(o);var n=this;var p=parent.Galaxy;if(p&&p.modal){this.modal=p.modal}else{this.modal=new m.Modal.View()}if(p&&p.currUser){this.is_admin=p.currUser.get("is_admin")}else{this.is_admin=false}this.options=o;this.deferred=new j();this.setElement("<div/>");$(this.container).append(this.$el);this.tree=new c(this);this.job_handler=new g(this);this.content=new f(this);this._buildForm(o)},message:function(n){$(this.container).empty();$(this.container).append(n)},reset:function(){for(var n in this.element_list){this.element_list[n].reset()}},rebuild:function(){this.tree.refresh();console.debug("tools-form::rebuild() - Rebuilding data structures.")},refresh:function(){if(this.is_dynamic){var n=this;this.deferred.reset();this.deferred.execute(function(){n._updateModel()})}},_buildModel:function(){var n=this;var o=galaxy_config.root+"api/tools/"+this.options.id+"/build?";if(this.options.job_id){o+="job_id="+this.options.job_id}else{if(this.options.dataset_id){o+="dataset_id="+this.options.dataset_id}else{var p=top.location.href;var q=p.indexOf("?");if(p.indexOf("tool_id=")!=-1&&q!==-1){o+=p.slice(q+1)}}}i.request({type:"GET",url:o,success:function(r){n.options=$.extend(n.options,r);n.model=r;n.inputs=r.inputs;console.debug("tools-form::initialize() - Initial tool model ready.");console.debug(r);n._buildForm()},error:function(r){console.debug("tools-form::initialize() - Initial tool model request failed.");console.debug(r)}})},_updateModel:function(){var n=this;var o=this.tree.finalize({data:function(r){if(r.values.length>0&&r.values[0]&&r.values[0].src==="hda"){return n.content.get({id:r.values[0].id,src:"hda"}).id_uncoded}return null}});console.debug("tools-form::_refreshForm() - Refreshing states.");console.debug(o);function q(u){for(var s in n.input_list){var t=n.field_list[s];var r=n.input_list[s];if(r.is_dynamic&&t.wait&&t.unwait){if(u){t.wait()}else{t.unwait()}}}}q(true);var p=this.deferred.register();i.request({type:"GET",url:galaxy_config.root+"api/tools/"+this.options.id+"/build",data:o,success:function(r){n._updateForm(r);q(false);n.deferred.done(p);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(r)},error:function(r){n.deferred.done(p);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(r)}})},_updateForm:function(n){var o=this;this.tree.matchModel(n,function(q,u){var p=o.input_list[q];if(p&&p.options){if(!_.isEqual(p.options,u.options)){p.options=u.options;var v=o.field_list[q];if(v.update){var t=[];switch(p.type){case"data":t=p.options;break;case"drill_down":t=p.options;break;default:for(var s in u.options){var r=u.options[s];if(r.length>2){t.push({label:r[0],value:r[1]})}}}v.update(t);v.trigger("change");console.debug("Updating options for "+q)}}}})},_buildForm:function(p){var o=this;this.field_list={};this.input_list={};this.element_list={};this.model=p;this.inputs=p.inputs;var s=new m.ButtonMenu({icon:"fa-gear",tooltip:"Click to see a list of options."});if(p.biostar_url){s.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(o.options.biostar_url+"/p/new/post/")}});s.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(o.options.biostar_url+"/t/"+o.options.id+"/")}})}s.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+o.options.id)}});if(this.is_admin){s.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+o.options.id+"/download"}})}this.section=new l.View(o,{inputs:this.inputs,cls:"ui-table-plain"});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new h.View({icon:"fa-wrench",title:"<b>"+this.model.name+"</b> "+this.model.description,cls:"ui-portlet-slim",operations:{menu:s},buttons:{execute:new m.Button({icon:"fa-check",tooltip:"Execute: "+o.model.name,title:"Execute",cls:"btn btn-primary",floating:"clear",onclick:function(){o.job_handler.submit()}})}});this.$el.empty();this.$el.append(this.portlet.$el);if(p.help!=""){this.$el.append(d.help(p.help))}if(p.citations){var r=$("<div/>");var n=new k.ToolCitationCollection();n.tool_id=p.id;var q=new a.CitationListView({el:r,collection:n});q.render();n.fetch();this.$el.append(r)}this.portlet.append(this.section.$el);this.rebuild()}});return{View:b}}); \ No newline at end of file +define(["utils/utils","utils/deferred","mvc/ui/ui-portlet","mvc/ui/ui-misc","mvc/citation/citation-model","mvc/citation/citation-view","mvc/tools","mvc/tools/tools-template","mvc/tools/tools-content","mvc/tools/tools-section","mvc/tools/tools-tree","mvc/tools/tools-jobs"],function(i,j,h,m,k,a,e,d,f,l,c,g){var b=Backbone.View.extend({container:"body",initialize:function(o){console.debug(o);var n=this;var p=parent.Galaxy;if(p&&p.modal){this.modal=p.modal}else{this.modal=new m.Modal.View()}if(p&&p.currUser){this.is_admin=p.currUser.get("is_admin")}else{this.is_admin=false}this.options=o;this.deferred=new j();this.setElement("<div/>");$(this.container).append(this.$el);this._buildForm()},reciept:function(n){$(this.container).empty();$(this.container).append(n)},reset:function(){for(var n in this.element_list){this.element_list[n].reset()}},rebuild:function(){this.tree.refresh();console.debug("tools-form::rebuild() - Rebuilding data structures.")},refresh:function(){if(this.is_dynamic){var n=this;this.deferred.reset();this.deferred.execute(function(){n._updateModel()})}},_buildModel:function(){var n=this;var o=galaxy_config.root+"api/tools/"+this.options.id+"/build?";if(this.options.job_id){o+="job_id="+this.options.job_id}else{if(this.options.dataset_id){o+="dataset_id="+this.options.dataset_id}else{o+="tool_version="+this.options.version+"&";var q=top.location.href;var r=q.indexOf("?");if(q.indexOf("tool_id=")!=-1&&r!==-1){o+=q.slice(r+1)}}}var p=this.deferred.register();i.request({type:"GET",url:o,success:function(s){n.options=s;n._buildForm();n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model ready.");console.debug(s)},error:function(s){n.deferred.done(p);console.debug("tools-form::initialize() - Initial tool model request failed.");console.debug(s);var t=s.error||"Uncaught error.";n.modal.show({title:"Tool cannot be executed",body:t,buttons:{Close:function(){n.modal.hide()}}})}})},_updateModel:function(){var n=this;var o=this.tree.finalize({data:function(s){if(s.values.length>0&&s.values[0]&&s.values[0].src==="hda"){return n.content.get({id:s.values[0].id,src:"hda"}).id_uncoded}return null}});console.debug("tools-form::_refreshForm() - Refreshing states.");console.debug(o);function r(v){for(var t in n.input_list){var u=n.field_list[t];var s=n.input_list[t];if(s.is_dynamic&&u.wait&&u.unwait){if(v){u.wait()}else{u.unwait()}}}}r(true);var q=this.deferred.register();var p=galaxy_config.root+"api/tools/"+this.options.id+"/build?tool_version="+this.options.version;i.request({type:"GET",url:p,data:o,success:function(s){n._updateForm(s);r(false);n.deferred.done(q);console.debug("tools-form::_refreshForm() - States refreshed.");console.debug(s)},error:function(s){n.deferred.done(q);console.debug("tools-form::_refreshForm() - Refresh request failed.");console.debug(s)}})},_updateForm:function(n){var o=this;this.tree.matchModel(n,function(q,u){var p=o.input_list[q];if(p&&p.options){if(!_.isEqual(p.options,u.options)){p.options=u.options;var v=o.field_list[q];if(v.update){var t=[];if((["data","data_collection","drill_down"]).indexOf(p.type)!=-1){t=p.options}else{for(var s in u.options){var r=u.options[s];if(r.length>2){t.push({label:r[0],value:r[1]})}}}v.update(t);v.trigger("change");console.debug("Updating options for "+q)}}}})},_buildForm:function(){var t=this;this.field_list={};this.input_list={};this.element_list={};this.tree=new c(this);this.job_handler=new g(this);this.content=new f(this);var v=this.options;var o=new m.ButtonMenu({icon:"fa-cubes",title:"Versions",tooltip:"Click to see available versions."});if(v.versions&&v.versions.length>1){for(var q in v.versions){o.addMenu({title:v.versions[q],icon:"fa-cube",onclick:function(){v.id=v.id.replace(v.version,this.title);v.version=this.title;t.deferred.reset();t.deferred.execute(function(){t._buildModel()})}})}}else{o.$el.hide()}var r=new m.ButtonMenu({icon:"fa-gear",tooltip:"Click to see a list of options."});if(v.biostar_url){r.addMenu({icon:"fa-question-circle",title:"Question?",tooltip:"Ask a question about this tool (Biostar)",onclick:function(){window.open(v.biostar_url+"/p/new/post/")}});r.addMenu({icon:"fa-search",title:"Search",tooltip:"Search help for this tool (Biostar)",onclick:function(){window.open(v.biostar_url+"/t/"+v.id+"/")}})}r.addMenu({icon:"fa-share",title:"Share",tooltip:"Share this tool",onclick:function(){prompt("Copy to clipboard: Ctrl+C, Enter",window.location.origin+galaxy_config.root+"root?tool_id="+v.id)}});if(this.is_admin){r.addMenu({icon:"fa-download",title:"Download",tooltip:"Download this tool",onclick:function(){window.location.href=galaxy_config.root+"api/tools/"+v.id+"/download"}})}this.section=new l.View(t,{inputs:v.inputs,cls:"ui-table-plain"});if(this.incompatible){this.$el.hide();$("#tool-form-classic").show();return}this.portlet=new h.View({icon:"fa-wrench",title:"<b>"+v.name+"</b> "+v.description+" (Version "+v.version+")",cls:"ui-portlet-slim",operations:{menu:r,versions:o},buttons:{execute:new m.Button({icon:"fa-check",tooltip:"Execute: "+v.name,title:"Execute",cls:"btn btn-primary",floating:"clear",onclick:function(){t.job_handler.submit()}})}});this.$el.empty();this.$el.append(this.portlet.$el);if(v.help!=""){this.$el.append(d.help(v.help))}if(v.citations){var s=$("<div/>");var n=new k.ToolCitationCollection();n.tool_id=v.id;var p=new a.CitationListView({el:s,collection:n});p.render();n.fetch();this.$el.append(s)}if(v.message){var u=new m.Message({persistent:true,status:"warning",message:v.message});this.portlet.append(u.$el)}this.portlet.append(this.section.$el);this.rebuild()}});return{View:b}}); \ No newline at end of file diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/scripts/packed/mvc/tools/tools-jobs.js --- a/static/scripts/packed/mvc/tools/tools-jobs.js +++ b/static/scripts/packed/mvc/tools/tools-jobs.js @@ -1,1 +1,1 @@ -define(["utils/utils","mvc/tools/tools-template"],function(b,a){return Backbone.Model.extend({initialize:function(d,c){this.app=d;this.options=b.merge(c,this.optionsDefault)},submit:function(){var c=this;var d={tool_id:this.app.options.id,inputs:this.app.tree.finalize()};this.app.reset();if(!this._validation(d)){console.debug("tools-jobs::submit - Submission canceled. Validation failed.");return}console.debug(d);this.app.modal.show({title:"Please wait...",body:"progress",closing_events:true,buttons:{Close:function(){c.app.modal.hide()}}});b.request({type:"POST",url:galaxy_config.root+"api/tools",data:d,success:function(e){c.app.modal.hide();c.app.message(a.success(e));c._refreshHdas()},error:function(e,g){c.app.modal.hide();if(e&&e.message&&e.message.data){var h=c.app.tree.matchResponse(e.message.data);for(var f in h){c._foundError(f,h[f]);break}}else{console.debug(e);c.app.modal.show({title:"Job submission failed",body:a.error(d),buttons:{Close:function(){c.app.modal.hide()}}})}}})},_foundError:function(c,d){var e=this.app.element_list[c];e.error(d||"Please verify this parameter.");$(this.app.container).animate({scrollTop:e.$el.offset().top-20},500)},_validation:function(h){var d=h.inputs;var m=-1;var i=null;for(var k in d){var f=d[k];var l=this.app.tree.match(k);var e=this.app.field_list[l];var j=this.app.input_list[l];if(!l||!j||!e){console.debug("tools-jobs::_validation - Retrieving input objects failed.");continue}if(!j.optional&&e.validate&&!e.validate()){this._foundError(l);return false}if(f&&f.batch){var g=f.values.length;var c=null;if(g>0){c=f.values[0]&&f.values[0].src}if(c){if(i===null){i=c}else{if(i!==c){this._foundError(l,"Please select either dataset or dataset list fields for all batch mode fields.");return false}}}if(m===-1){m=g}else{if(m!==g){this._foundError(l,"Please make sure that you select the same number of inputs for all batch mode fields. This field contains <b>"+g+"</b> selection(s) while a previous field contains <b>"+m+"</b>.");return false}}}}return true},_refreshHdas:function(){if(parent.Galaxy&&parent.Galaxy.currHistoryPanel){parent.Galaxy.currHistoryPanel.refreshContents()}}})}); \ No newline at end of file +define(["utils/utils","mvc/tools/tools-template"],function(b,a){return Backbone.Model.extend({initialize:function(c){this.app=c},submit:function(){var c=this;var d={tool_id:this.app.options.id,tool_version:this.app.options.version,inputs:this.app.tree.finalize()};this.app.reset();if(!this._validation(d)){console.debug("tools-jobs::submit - Submission canceled. Validation failed.");return}console.debug(d);this.app.modal.show({title:"Please wait...",body:"progress",closing_events:true,buttons:{Close:function(){c.app.modal.hide()}}});b.request({type:"POST",url:galaxy_config.root+"api/tools",data:d,success:function(e){c.app.modal.hide();c.app.reciept(a.success(e));c._refreshHdas()},error:function(e,g){c.app.modal.hide();if(e&&e.message&&e.message.data){var h=c.app.tree.matchResponse(e.message.data);for(var f in h){c._foundError(f,h[f]);break}}else{console.debug(e);c.app.modal.show({title:"Job submission failed",body:a.error(d),buttons:{Close:function(){c.app.modal.hide()}}})}}})},_foundError:function(c,d){var e=this.app.element_list[c];e.error(d||"Please verify this parameter.");$(this.app.container).animate({scrollTop:e.$el.offset().top-20},500)},_validation:function(h){var d=h.inputs;var m=-1;var i=null;for(var k in d){var f=d[k];var l=this.app.tree.match(k);var e=this.app.field_list[l];var j=this.app.input_list[l];if(!l||!j||!e){console.debug("tools-jobs::_validation - Retrieving input objects failed.");continue}if(!j.optional&&e.validate&&!e.validate()){this._foundError(l);return false}if(f&&f.batch){var g=f.values.length;var c=null;if(g>0){c=f.values[0]&&f.values[0].src}if(c){if(i===null){i=c}else{if(i!==c){this._foundError(l,"Please select either dataset or dataset list fields for all batch mode fields.");return false}}}if(m===-1){m=g}else{if(m!==g){this._foundError(l,"Please make sure that you select the same number of inputs for all batch mode fields. This field contains <b>"+g+"</b> selection(s) while a previous field contains <b>"+m+"</b>.");return false}}}}return true},_refreshHdas:function(){if(parent.Galaxy&&parent.Galaxy.currHistoryPanel){parent.Galaxy.currHistoryPanel.refreshContents()}}})}); \ No newline at end of file diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/scripts/packed/mvc/tools/tools-select-content.js --- a/static/scripts/packed/mvc/tools/tools-select-content.js +++ b/static/scripts/packed/mvc/tools/tools-select-content.js @@ -1,1 +1,1 @@ -define(["utils/utils","mvc/ui/ui-misc","mvc/ui/ui-tabs","mvc/tools/tools-template"],function(c,e,b,a){var d=Backbone.View.extend({initialize:function(f,o){this.app=f;this.options=o;var n=this;this.setElement("<div/>");this.list={};var m=[];if(o.type=="data_collection"){this.mode="collection"}else{if(o.multiple){this.mode="multiple"}else{this.mode="single"}}this.current=this.mode;this.list={};var j=o.extensions.toString();if(j){j=j.replace(",",", ");var k=j.lastIndexOf(", ");if(k!=-1){j=j.substr(0,k)+" or "+j.substr(k+1)}}var h="No dataset available.";if(j){h="No "+j+" dataset available."}var l="No dataset list available.";if(j){l="No "+j+" dataset list available."}if(this.mode=="single"){m.push({icon:"fa-file-o",label:"Single dataset",value:"single"});this.select_single=new e.Select.View({error_text:h,onchange:function(){n.trigger("change")}});this.list.single={field:this.select_single,type:"hda"}}if(this.mode=="single"||this.mode=="multiple"){m.push({icon:"fa-files-o",label:"Multiple datasets",value:"multiple"});this.select_multiple=new e.Select.View({multiple:true,error_text:h,onchange:function(){n.trigger("change")}});this.list.multiple={field:this.select_multiple,type:"hda"}}if(this.mode=="single"||this.mode=="collection"){m.push({icon:"fa-folder-o",label:"List of datasets",value:"collection"});this.select_collection=new e.Select.View({error_text:l,onchange:function(){n.trigger("change")}});this.list.collection={field:this.select_collection,type:"hdca"}}this.button_type=new e.RadioButton.View({value:this.current,data:m,onchange:function(i){n.current=i;n.refresh();n.trigger("change")}});this.$batch=$(a.batchMode());if(_.size(this.list)>1){this.$el.append(c.wrap(this.button_type.$el))}for(var g in this.list){this.$el.append(this.list[g].field.$el)}this.$el.append(this.$batch);this.update(o.data);if(this.options.value!==undefined){this.value(this.options.value)}this.refresh();this.on("change",function(){if(o.onchange){o.onchange(n.value())}})},wait:function(){for(var f in this.list){this.list[f].field.wait()}},unwait:function(){for(var f in this.list){this.list[f].field.unwait()}},update:function(g){var l=[];for(var j in g.hda){var k=g.hda[j];l.push({label:k.hid+": "+k.name,value:k.id})}var f=[];for(var j in g.hdca){var h=g.hdca[j];f.push({label:h.hid+": "+h.name,value:h.id})}this.select_single&&this.select_single.update(l);this.select_multiple&&this.select_multiple.update(l);this.select_collection&&this.select_collection.update(f);this.app.content.add(g)},value:function(m){if(m&&m.values){try{var l=[];for(var h in m.values){l.push(m.values[h].id)}if(m&&m.values.length>0&&m.values[0].src=="hcda"){this.current="collection";this.select_collection.value(l[0])}else{if(this.mode=="multiple"){this.current="multiple";this.select_multiple.value(l)}else{this.current="single";this.select_single.value(l[0])}}this.refresh();var g=this._select();if(!g.validate()){g.value(g.first())}}catch(k){console.debug("tools-select-content::value() - Skipped.")}}var j=this._select().value();if(!(j instanceof Array)){j=[j]}var f={batch:this.mode=="single"&&this.current!="single",values:[]};for(var h in j){f.values.push({id:j[h],src:this.list[this.current].type})}return f},validate:function(){return this._select().validate()},refresh:function(){for(var g in this.list){var f=this.list[g].field.$el;if(this.current==g){f.show()}else{f.hide()}}if(this.mode=="single"&&this.current!="single"){this.$batch.show()}else{this.$batch.hide()}},_select:function(){return this.list[this.current].field}});return{View:d}}); \ No newline at end of file +define(["utils/utils","mvc/ui/ui-misc","mvc/ui/ui-tabs","mvc/tools/tools-template"],function(c,e,b,a){var d=Backbone.View.extend({initialize:function(f,o){this.app=f;this.options=o;var n=this;this.setElement("<div/>");this.list={};var m=[];if(o.type=="data_collection"){this.mode="collection"}else{if(o.multiple){this.mode="multiple"}else{this.mode="single"}}this.current=this.mode;this.list={};var j=o.extensions.toString();if(j){j=j.replace(/,/g,", ");var k=j.lastIndexOf(", ");if(k!=-1){j=j.substr(0,k)+" or "+j.substr(k+1)}}var h="No dataset available.";if(j){h="No "+j+" dataset available."}var l="No dataset list available.";if(j){l="No "+j+" dataset collection available."}if(this.mode=="single"){m.push({icon:"fa-file-o",label:"Single dataset",value:"single"});this.select_single=new e.Select.View({error_text:h,onchange:function(){n.trigger("change")}});this.list.single={field:this.select_single,type:"hda"}}if(this.mode=="single"||this.mode=="multiple"){m.push({icon:"fa-files-o",label:"Multiple datasets",value:"multiple"});this.select_multiple=new e.Select.View({multiple:true,error_text:h,onchange:function(){n.trigger("change")}});this.list.multiple={field:this.select_multiple,type:"hda"}}if(this.mode=="single"||this.mode=="collection"){m.push({icon:"fa-folder-o",label:"Dataset collection",value:"collection"});this.select_collection=new e.Select.View({error_text:l,onchange:function(){n.trigger("change")}});this.list.collection={field:this.select_collection,type:"hdca"}}this.button_type=new e.RadioButton.View({value:this.current,data:m,onchange:function(i){n.current=i;n.refresh();n.trigger("change")}});this.$batch=$(a.batchMode());if(_.size(this.list)>1){this.$el.append(c.wrap(this.button_type.$el))}for(var g in this.list){this.$el.append(this.list[g].field.$el)}this.$el.append(this.$batch);this.update(o.data);if(this.options.value!==undefined){this.value(this.options.value)}this.refresh();this.on("change",function(){if(o.onchange){o.onchange(n.value())}})},wait:function(){for(var f in this.list){this.list[f].field.wait()}},unwait:function(){for(var f in this.list){this.list[f].field.unwait()}},update:function(g){var l=[];for(var j in g.hda){var k=g.hda[j];l.push({label:k.hid+": "+k.name,value:k.id})}var f=[];for(var j in g.hdca){var h=g.hdca[j];f.push({label:h.hid+": "+h.name,value:h.id})}this.select_single&&this.select_single.update(l);this.select_multiple&&this.select_multiple.update(l);this.select_collection&&this.select_collection.update(f);this.app.content.add(g)},value:function(m){if(m&&m.values){try{var l=[];for(var h in m.values){l.push(m.values[h].id)}if(m&&m.values.length>0&&m.values[0].src=="hcda"){this.current="collection";this.select_collection.value(l[0])}else{if(this.mode=="multiple"){this.current="multiple";this.select_multiple.value(l)}else{this.current="single";this.select_single.value(l[0])}}this.refresh();var g=this._select();if(!g.validate()){g.value(g.first())}}catch(k){console.debug("tools-select-content::value() - Skipped.")}}var j=this._select().value();if(!(j instanceof Array)){j=[j]}var f={batch:this.mode=="single"&&this.current!="single",values:[]};for(var h in j){f.values.push({id:j[h],src:this.list[this.current].type})}return f},validate:function(){return this._select().validate()},refresh:function(){for(var g in this.list){var f=this.list[g].field.$el;if(this.current==g){f.show()}else{f.hide()}}if(this.mode=="single"&&this.current!="single"){this.$batch.show()}else{this.$batch.hide()}},_select:function(){return this.list[this.current].field}});return{View:d}}); \ No newline at end of file diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/scripts/packed/mvc/ui/ui-misc.js --- a/static/scripts/packed/mvc/ui/ui-misc.js +++ b/static/scripts/packed/mvc/ui/ui-misc.js @@ -1,1 +1,1 @@ -define(["utils/utils","mvc/ui/ui-select-default","mvc/ui/ui-slider","mvc/ui/ui-options","mvc/ui/ui-drilldown","mvc/ui/ui-button-menu","mvc/ui/ui-modal"],function(k,b,e,o,l,q,m){var d=Backbone.View.extend({optionsDefault:{url:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options))},_template:function(r){return'<img class="ui-image '+r.cls+'" src="'+r.url+'"/>'}});var j=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options))},title:function(r){this.$el.html(r)},_template:function(r){return'<label class="ui-label '+r.cls+'">'+r.title+"</label>"},value:function(){return options.title}});var c=Backbone.View.extend({optionsDefault:{floating:"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).tooltip({title:r.tooltip,placement:"bottom"})},_template:function(r){return'<div><span class="fa '+r.icon+'" class="ui-icon"/> '+r.title+"</div>"}});var g=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button btn btn-default",icon:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).on("click",function(){$(".tooltip").hide();if(r.onclick){r.onclick()}});$(this.el).tooltip({title:r.tooltip,placement:"bottom"})},_template:function(r){var s='<button id="'+r.id+'" type="submit" style="float: '+r.floating+';" type="button" class="'+r.cls+'">';if(r.icon){s+='<i class="icon fa '+r.icon+'"></i> '}s+=r.title+"</button>";return s}});var h=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button-icon",icon:"",tooltip:"",onclick:null},initialize:function(s){this.options=k.merge(s,this.optionsDefault);this.setElement(this._template(this.options));this.$button=this.$el.find(".button");var r=this;$(this.el).on("click",function(){$(".tooltip").hide();if(s.onclick&&!r.disabled){s.onclick()}});$(this.el).tooltip({title:s.tooltip,placement:"bottom"})},disable:function(){this.$button.addClass("disabled");this.disabled=true},enable:function(){this.$button.removeClass("disabled");this.disabled=false},_template:function(r){var s="";if(r.title){s="width: auto;"}var t='<div id="'+r.id+'" style="float: '+r.floating+"; "+s+'" class="'+r.cls+'">';if(r.title){t+='<div class="button"><i class="icon fa '+r.icon+'"/> <span class="title">'+r.title+"</span></div>"}else{t+='<i class="icon fa '+r.icon+'"/>'}t+="</div>";return t}});var f=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).on("click",r.onclick)},_template:function(r){return'<div><a href="javascript:void(0)" class="ui-anchor '+r.cls+'">'+r.title+"</a></div>"}});var n=Backbone.View.extend({optionsDefault:{message:"",status:"info",persistent:false},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement("<div></div>")},update:function(s){this.options=k.merge(s,this.optionsDefault);if(s.message!=""){this.$el.html(this._template(this.options));this.$el.find(".alert").append(s.message);this.$el.fadeIn();if(!s.persistent){var r=this;window.setTimeout(function(){if(r.$el.is(":visible")){r.$el.fadeOut()}else{r.$el.hide()}},3000)}}else{this.$el.fadeOut()}},_template:function(r){return'<div class="ui-message alert alert-'+r.status+'"/>'}});var a=Backbone.View.extend({optionsDefault:{onclick:null,searchword:""},initialize:function(s){this.options=k.merge(s,this.optionsDefault);this.setElement(this._template(this.options));var r=this;if(this.options.onclick){this.$el.on("submit",function(u){var t=r.$el.find("#search");r.options.onclick(t.val())})}},_template:function(r){return'<div class="ui-search"><form onsubmit="return false;"><input id="search" class="form-control input-sm" type="text" name="search" placeholder="Search..." value="'+r.searchword+'"><button type="submit" class="btn search-btn"><i class="fa fa-search"></i></button></form></div>'}});var i=Backbone.View.extend({optionsDefault:{type:"text",placeholder:"",disabled:false,visible:true,cls:"",area:false},initialize:function(s){this.options=k.merge(s,this.optionsDefault);this.setElement(this._template(this.options));if(this.options.value!==undefined){this.value(this.options.value)}if(this.options.disabled){this.$el.prop("disabled",true)}if(!this.options.visible){this.$el.hide()}var r=this;this.$el.on("input",function(){if(r.options.onchange){r.options.onchange(r.$el.val())}})},value:function(r){if(r!==undefined){this.$el.val(r)}return this.$el.val()},_template:function(r){if(r.area){return'<textarea id="'+r.id+'" class="ui-textarea '+r.cls+'"></textarea>'}else{return'<input id="'+r.id+'" type="'+r.type+'" value="'+r.value+'" placeholder="'+r.placeholder+'" class="ui-input '+r.cls+'">'}}});var p=Backbone.View.extend({initialize:function(r){this.options=r;this.setElement(this._template(this.options));if(this.options.value!==undefined){this.value(this.options.value)}},value:function(r){if(r!==undefined){this.$el.val(r)}return this.$el.val()},_template:function(r){return'<hidden id="'+r.id+'" value="'+r.value+'"/>'}});return{Anchor:f,Button:g,ButtonIcon:h,ButtonMenu:q,Icon:c,Image:d,Input:i,Label:j,Message:n,Modal:m,RadioButton:o.RadioButton,Checkbox:o.Checkbox,Radio:o.Radio,Searchbox:a,Select:b,Hidden:p,Slider:e,Drilldown:l}}); \ No newline at end of file +define(["utils/utils","mvc/ui/ui-select-default","mvc/ui/ui-slider","mvc/ui/ui-options","mvc/ui/ui-drilldown","mvc/ui/ui-button-menu","mvc/ui/ui-modal"],function(k,b,e,o,l,q,m){var d=Backbone.View.extend({optionsDefault:{url:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options))},_template:function(r){return'<img class="ui-image '+r.cls+'" src="'+r.url+'"/>'}});var j=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options))},title:function(r){this.$el.html(r)},_template:function(r){return'<label class="ui-label '+r.cls+'">'+r.title+"</label>"},value:function(){return options.title}});var c=Backbone.View.extend({optionsDefault:{floating:"right",icon:"",tooltip:"",placement:"bottom",title:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).tooltip({title:r.tooltip,placement:"bottom"})},_template:function(r){return'<div><span class="fa '+r.icon+'" class="ui-icon"/> '+r.title+"</div>"}});var g=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button btn btn-default",icon:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).on("click",function(){$(".tooltip").hide();if(r.onclick){r.onclick()}});$(this.el).tooltip({title:r.tooltip,placement:"bottom"})},_template:function(r){var s='<button id="'+r.id+'" type="submit" style="float: '+r.floating+';" type="button" class="'+r.cls+'">';if(r.icon){s+='<i class="icon fa '+r.icon+'"></i> '}s+=r.title+"</button>";return s}});var h=Backbone.View.extend({optionsDefault:{id:null,title:"",floating:"right",cls:"ui-button-icon",icon:"",tooltip:"",onclick:null},initialize:function(s){this.options=k.merge(s,this.optionsDefault);this.setElement(this._template(this.options));this.$button=this.$el.find(".button");var r=this;$(this.el).on("click",function(){$(".tooltip").hide();if(s.onclick&&!r.disabled){s.onclick()}});$(this.el).tooltip({title:s.tooltip,placement:"bottom"})},disable:function(){this.$button.addClass("disabled");this.disabled=true},enable:function(){this.$button.removeClass("disabled");this.disabled=false},_template:function(r){var s="";if(r.title){s="width: auto;"}var t='<div id="'+r.id+'" style="float: '+r.floating+"; "+s+'" class="'+r.cls+'">';if(r.title){t+='<div class="button"><i class="icon fa '+r.icon+'"/> <span class="title">'+r.title+"</span></div>"}else{t+='<i class="icon fa '+r.icon+'"/>'}t+="</div>";return t}});var f=Backbone.View.extend({optionsDefault:{title:"",cls:""},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement(this._template(this.options));$(this.el).on("click",r.onclick)},_template:function(r){return'<div><a href="javascript:void(0)" class="ui-anchor '+r.cls+'">'+r.title+"</a></div>"}});var n=Backbone.View.extend({optionsDefault:{message:null,status:"info",persistent:false},initialize:function(r){this.options=k.merge(r,this.optionsDefault);this.setElement("<div></div>");if(this.options.message){this.update(this.options)}},update:function(s){this.options=k.merge(s,this.optionsDefault);if(s.message!=""){this.$el.html(this._template(this.options));this.$el.find(".alert").append(s.message);this.$el.fadeIn();if(!s.persistent){var r=this;window.setTimeout(function(){if(r.$el.is(":visible")){r.$el.fadeOut()}else{r.$el.hide()}},3000)}}else{this.$el.fadeOut()}},_template:function(r){return'<div class="ui-message alert alert-'+r.status+'"/>'}});var a=Backbone.View.extend({optionsDefault:{onclick:null,searchword:""},initialize:function(s){this.options=k.merge(s,this.optionsDefault);this.setElement(this._template(this.options));var r=this;if(this.options.onclick){this.$el.on("submit",function(u){var t=r.$el.find("#search");r.options.onclick(t.val())})}},_template:function(r){return'<div class="ui-search"><form onsubmit="return false;"><input id="search" class="form-control input-sm" type="text" name="search" placeholder="Search..." value="'+r.searchword+'"><button type="submit" class="btn search-btn"><i class="fa fa-search"></i></button></form></div>'}});var i=Backbone.View.extend({optionsDefault:{type:"text",placeholder:"",disabled:false,visible:true,cls:"",area:false},initialize:function(s){this.options=k.merge(s,this.optionsDefault);this.setElement(this._template(this.options));if(this.options.value!==undefined){this.value(this.options.value)}if(this.options.disabled){this.$el.prop("disabled",true)}if(!this.options.visible){this.$el.hide()}var r=this;this.$el.on("input",function(){if(r.options.onchange){r.options.onchange(r.$el.val())}})},value:function(r){if(r!==undefined){this.$el.val(r)}return this.$el.val()},_template:function(r){if(r.area){return'<textarea id="'+r.id+'" class="ui-textarea '+r.cls+'"></textarea>'}else{return'<input id="'+r.id+'" type="'+r.type+'" value="'+r.value+'" placeholder="'+r.placeholder+'" class="ui-input '+r.cls+'">'}}});var p=Backbone.View.extend({initialize:function(r){this.options=r;this.setElement(this._template(this.options));if(this.options.value!==undefined){this.value(this.options.value)}},value:function(r){if(r!==undefined){this.$el.val(r)}return this.$el.val()},_template:function(r){return'<hidden id="'+r.id+'" value="'+r.value+'"/>'}});return{Anchor:f,Button:g,ButtonIcon:h,ButtonMenu:q,Icon:c,Image:d,Input:i,Label:j,Message:n,Modal:m,RadioButton:o.RadioButton,Checkbox:o.Checkbox,Radio:o.Radio,Searchbox:a,Select:b,Hidden:p,Slider:e,Drilldown:l}}); \ No newline at end of file diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/style/blue/base.css --- a/static/style/blue/base.css +++ b/static/style/blue/base.css @@ -762,7 +762,7 @@ .nav-tabs{margin-bottom:15px} a{text-decoration:underline} label{font-weight:normal} -@font-face{font-family:'FontAwesome';src:url('../images/fonts/fontawesome-webfont.eot?v=4.0.1');src:url('../images/fonts/fontawesome-webfont.eot?#iefix&v=4.0.1') format('embedded-opentype'),url('../images/fonts/fontawesome-webfont.woff?v=4.0.1') format('woff'),url('../images/fonts/fontawesome-webfont.ttf?v=4.0.1') format('truetype'),url('../images/fonts/fontawesome-webfont.svg?v=4.0.1#fontawesomeregular') format('svg');font-weight:normal;font-style:normal}.fa{display:inline-block;font-family:FontAwesome;font-style:normal;font-weight:normal;line-height:1;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale} +@font-face{font-family:'FontAwesome';src:url('../images/fonts/fontawesome-webfont.eot?v=4.2.0');src:url('../images/fonts/fontawesome-webfont.eot?#iefix&v=4.2.0') format('embedded-opentype'),url('../images/fonts/fontawesome-webfont.woff?v=4.2.0') format('woff'),url('../images/fonts/fontawesome-webfont.ttf?v=4.2.0') format('truetype'),url('../images/fonts/fontawesome-webfont.svg?v=4.2.0#fontawesomeregular') format('svg');font-weight:normal;font-style:normal}.fa{display:inline-block;font:normal normal normal 14px/1 FontAwesome;font-size:inherit;text-rendering:auto;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale} .fa-lg{font-size:1.3333333333333333em;line-height:.75em;vertical-align:-15%} .fa-2x{font-size:2em} .fa-3x{font-size:3em} @@ -776,12 +776,13 @@ .pull-left{float:left} .fa.pull-left{margin-right:.3em} .fa.pull-right{margin-left:.3em} -.fa-spin{-webkit-animation:spin 2s infinite linear;-moz-animation:spin 2s infinite linear;-o-animation:spin 2s infinite linear;animation:spin 2s infinite linear} -@-moz-keyframes spin{0%{-moz-transform:rotate(0deg)} 100%{-moz-transform:rotate(359deg)}}@-webkit-keyframes spin{0%{-webkit-transform:rotate(0deg)} 100%{-webkit-transform:rotate(359deg)}}@-o-keyframes spin{0%{-o-transform:rotate(0deg)} 100%{-o-transform:rotate(359deg)}}@-ms-keyframes spin{0%{-ms-transform:rotate(0deg)} 100%{-ms-transform:rotate(359deg)}}@keyframes spin{0%{transform:rotate(0deg)} 100%{transform:rotate(359deg)}}.fa-rotate-90{filter:progid:DXImageTransform.Microsoft.BasicImage(rotation=1);-webkit-transform:rotate(90deg);-moz-transform:rotate(90deg);-ms-transform:rotate(90deg);-o-transform:rotate(90deg);transform:rotate(90deg)} -.fa-rotate-180{filter:progid:DXImageTransform.Microsoft.BasicImage(rotation=2);-webkit-transform:rotate(180deg);-moz-transform:rotate(180deg);-ms-transform:rotate(180deg);-o-transform:rotate(180deg);transform:rotate(180deg)} -.fa-rotate-270{filter:progid:DXImageTransform.Microsoft.BasicImage(rotation=3);-webkit-transform:rotate(270deg);-moz-transform:rotate(270deg);-ms-transform:rotate(270deg);-o-transform:rotate(270deg);transform:rotate(270deg)} -.fa-flip-horizontal{filter:progid:DXImageTransform.Microsoft.BasicImage(rotation=0, mirror=1);-webkit-transform:scale(-1, 1);-moz-transform:scale(-1, 1);-ms-transform:scale(-1, 1);-o-transform:scale(-1, 1);transform:scale(-1, 1)} -.fa-flip-vertical{filter:progid:DXImageTransform.Microsoft.BasicImage(rotation=2, mirror=1);-webkit-transform:scale(1, -1);-moz-transform:scale(1, -1);-ms-transform:scale(1, -1);-o-transform:scale(1, -1);transform:scale(1, -1)} +.fa-spin{-webkit-animation:fa-spin 2s infinite linear;animation:fa-spin 2s infinite linear} +@-webkit-keyframes fa-spin{0%{-webkit-transform:rotate(0deg);transform:rotate(0deg)} 100%{-webkit-transform:rotate(359deg);transform:rotate(359deg)}}@keyframes fa-spin{0%{-webkit-transform:rotate(0deg);transform:rotate(0deg)} 100%{-webkit-transform:rotate(359deg);transform:rotate(359deg)}}.fa-rotate-90{filter:progid:DXImageTransform.Microsoft.BasicImage(rotation=1);-webkit-transform:rotate(90deg);-ms-transform:rotate(90deg);transform:rotate(90deg)} +.fa-rotate-180{filter:progid:DXImageTransform.Microsoft.BasicImage(rotation=2);-webkit-transform:rotate(180deg);-ms-transform:rotate(180deg);transform:rotate(180deg)} +.fa-rotate-270{filter:progid:DXImageTransform.Microsoft.BasicImage(rotation=3);-webkit-transform:rotate(270deg);-ms-transform:rotate(270deg);transform:rotate(270deg)} +.fa-flip-horizontal{filter:progid:DXImageTransform.Microsoft.BasicImage(rotation=0, mirror=1);-webkit-transform:scale(-1, 1);-ms-transform:scale(-1, 1);transform:scale(-1, 1)} +.fa-flip-vertical{filter:progid:DXImageTransform.Microsoft.BasicImage(rotation=2, mirror=1);-webkit-transform:scale(1, -1);-ms-transform:scale(1, -1);transform:scale(1, -1)} +:root .fa-rotate-90,:root .fa-rotate-180,:root .fa-rotate-270,:root .fa-flip-horizontal,:root .fa-flip-vertical{filter:none} .fa-stack{position:relative;display:inline-block;width:2em;height:2em;line-height:2em;vertical-align:middle} .fa-stack-1x,.fa-stack-2x{position:absolute;left:0;width:100%;text-align:center} .fa-stack-1x{line-height:inherit} @@ -800,7 +801,7 @@ .fa-th:before{content:"\f00a"} .fa-th-list:before{content:"\f00b"} .fa-check:before{content:"\f00c"} -.fa-times:before{content:"\f00d"} +.fa-remove:before,.fa-close:before,.fa-times:before{content:"\f00d"} .fa-search-plus:before{content:"\f00e"} .fa-search-minus:before{content:"\f010"} .fa-power-off:before{content:"\f011"} @@ -846,7 +847,7 @@ .fa-dedent:before,.fa-outdent:before{content:"\f03b"} .fa-indent:before{content:"\f03c"} .fa-video-camera:before{content:"\f03d"} -.fa-picture-o:before{content:"\f03e"} +.fa-photo:before,.fa-image:before,.fa-picture-o:before{content:"\f03e"} .fa-pencil:before{content:"\f040"} .fa-map-marker:before{content:"\f041"} .fa-adjust:before{content:"\f042"} @@ -854,7 +855,7 @@ .fa-edit:before,.fa-pencil-square-o:before{content:"\f044"} .fa-share-square-o:before{content:"\f045"} .fa-check-square-o:before{content:"\f046"} -.fa-move:before{content:"\f047"} +.fa-arrows:before{content:"\f047"} .fa-step-backward:before{content:"\f048"} .fa-fast-backward:before{content:"\f049"} .fa-backward:before{content:"\f04a"} @@ -882,8 +883,8 @@ .fa-arrow-up:before{content:"\f062"} .fa-arrow-down:before{content:"\f063"} .fa-mail-forward:before,.fa-share:before{content:"\f064"} -.fa-resize-full:before{content:"\f065"} -.fa-resize-small:before{content:"\f066"} +.fa-expand:before{content:"\f065"} +.fa-compress:before{content:"\f066"} .fa-plus:before{content:"\f067"} .fa-minus:before{content:"\f068"} .fa-asterisk:before{content:"\f069"} @@ -905,9 +906,9 @@ .fa-shopping-cart:before{content:"\f07a"} .fa-folder:before{content:"\f07b"} .fa-folder-open:before{content:"\f07c"} -.fa-resize-vertical:before{content:"\f07d"} -.fa-resize-horizontal:before{content:"\f07e"} -.fa-bar-chart-o:before{content:"\f080"} +.fa-arrows-v:before{content:"\f07d"} +.fa-arrows-h:before{content:"\f07e"} +.fa-bar-chart-o:before,.fa-bar-chart:before{content:"\f080"} .fa-twitter-square:before{content:"\f081"} .fa-facebook-square:before{content:"\f082"} .fa-camera-retro:before{content:"\f083"} @@ -954,8 +955,8 @@ .fa-tasks:before{content:"\f0ae"} .fa-filter:before{content:"\f0b0"} .fa-briefcase:before{content:"\f0b1"} -.fa-fullscreen:before{content:"\f0b2"} -.fa-group:before{content:"\f0c0"} +.fa-arrows-alt:before{content:"\f0b2"} +.fa-group:before,.fa-users:before{content:"\f0c0"} .fa-chain:before,.fa-link:before{content:"\f0c1"} .fa-cloud:before{content:"\f0c2"} .fa-flask:before{content:"\f0c3"} @@ -964,7 +965,7 @@ .fa-paperclip:before{content:"\f0c6"} .fa-save:before,.fa-floppy-o:before{content:"\f0c7"} .fa-square:before{content:"\f0c8"} -.fa-reorder:before{content:"\f0c9"} +.fa-navicon:before,.fa-reorder:before,.fa-bars:before{content:"\f0c9"} .fa-list-ul:before{content:"\f0ca"} .fa-list-ol:before{content:"\f0cb"} .fa-strikethrough:before{content:"\f0cc"} @@ -983,8 +984,8 @@ .fa-caret-right:before{content:"\f0da"} .fa-columns:before{content:"\f0db"} .fa-unsorted:before,.fa-sort:before{content:"\f0dc"} -.fa-sort-down:before,.fa-sort-asc:before{content:"\f0dd"} -.fa-sort-up:before,.fa-sort-desc:before{content:"\f0de"} +.fa-sort-down:before,.fa-sort-desc:before{content:"\f0dd"} +.fa-sort-up:before,.fa-sort-asc:before{content:"\f0de"} .fa-envelope:before{content:"\f0e0"} .fa-linkedin:before{content:"\f0e1"} .fa-rotate-left:before,.fa-undo:before{content:"\f0e2"} @@ -1007,8 +1008,8 @@ .fa-coffee:before{content:"\f0f4"} .fa-cutlery:before{content:"\f0f5"} .fa-file-text-o:before{content:"\f0f6"} -.fa-building:before{content:"\f0f7"} -.fa-hospital:before{content:"\f0f8"} +.fa-building-o:before{content:"\f0f7"} +.fa-hospital-o:before{content:"\f0f8"} .fa-ambulance:before{content:"\f0f9"} .fa-medkit:before{content:"\f0fa"} .fa-fighter-jet:before{content:"\f0fb"} @@ -1036,8 +1037,6 @@ .fa-github-alt:before{content:"\f113"} .fa-folder-o:before{content:"\f114"} .fa-folder-open-o:before{content:"\f115"} -.fa-expand-o:before{content:"\f116"} -.fa-collapse-o:before{content:"\f117"} .fa-smile-o:before{content:"\f118"} .fa-frown-o:before{content:"\f119"} .fa-meh-o:before{content:"\f11a"} @@ -1047,8 +1046,7 @@ .fa-flag-checkered:before{content:"\f11e"} .fa-terminal:before{content:"\f120"} .fa-code:before{content:"\f121"} -.fa-reply-all:before{content:"\f122"} -.fa-mail-reply-all:before{content:"\f122"} +.fa-mail-reply-all:before,.fa-reply-all:before{content:"\f122"} .fa-star-half-empty:before,.fa-star-half-full:before,.fa-star-half-o:before{content:"\f123"} .fa-location-arrow:before{content:"\f124"} .fa-crop:before{content:"\f125"} @@ -1075,10 +1073,10 @@ .fa-html5:before{content:"\f13b"} .fa-css3:before{content:"\f13c"} .fa-anchor:before{content:"\f13d"} -.fa-unlock-o:before{content:"\f13e"} +.fa-unlock-alt:before{content:"\f13e"} .fa-bullseye:before{content:"\f140"} -.fa-ellipsis-horizontal:before{content:"\f141"} -.fa-ellipsis-vertical:before{content:"\f142"} +.fa-ellipsis-h:before{content:"\f141"} +.fa-ellipsis-v:before{content:"\f142"} .fa-rss-square:before{content:"\f143"} .fa-play-circle:before{content:"\f144"} .fa-ticket:before{content:"\f145"} @@ -1157,6 +1155,118 @@ .fa-wheelchair:before{content:"\f193"} .fa-vimeo-square:before{content:"\f194"} .fa-turkish-lira:before,.fa-try:before{content:"\f195"} +.fa-plus-square-o:before{content:"\f196"} +.fa-space-shuttle:before{content:"\f197"} +.fa-slack:before{content:"\f198"} +.fa-envelope-square:before{content:"\f199"} +.fa-wordpress:before{content:"\f19a"} +.fa-openid:before{content:"\f19b"} +.fa-institution:before,.fa-bank:before,.fa-university:before{content:"\f19c"} +.fa-mortar-board:before,.fa-graduation-cap:before{content:"\f19d"} +.fa-yahoo:before{content:"\f19e"} +.fa-google:before{content:"\f1a0"} +.fa-reddit:before{content:"\f1a1"} +.fa-reddit-square:before{content:"\f1a2"} +.fa-stumbleupon-circle:before{content:"\f1a3"} +.fa-stumbleupon:before{content:"\f1a4"} +.fa-delicious:before{content:"\f1a5"} +.fa-digg:before{content:"\f1a6"} +.fa-pied-piper:before{content:"\f1a7"} +.fa-pied-piper-alt:before{content:"\f1a8"} +.fa-drupal:before{content:"\f1a9"} +.fa-joomla:before{content:"\f1aa"} +.fa-language:before{content:"\f1ab"} +.fa-fax:before{content:"\f1ac"} +.fa-building:before{content:"\f1ad"} +.fa-child:before{content:"\f1ae"} +.fa-paw:before{content:"\f1b0"} +.fa-spoon:before{content:"\f1b1"} +.fa-cube:before{content:"\f1b2"} +.fa-cubes:before{content:"\f1b3"} +.fa-behance:before{content:"\f1b4"} +.fa-behance-square:before{content:"\f1b5"} +.fa-steam:before{content:"\f1b6"} +.fa-steam-square:before{content:"\f1b7"} +.fa-recycle:before{content:"\f1b8"} +.fa-automobile:before,.fa-car:before{content:"\f1b9"} +.fa-cab:before,.fa-taxi:before{content:"\f1ba"} +.fa-tree:before{content:"\f1bb"} +.fa-spotify:before{content:"\f1bc"} +.fa-deviantart:before{content:"\f1bd"} +.fa-soundcloud:before{content:"\f1be"} +.fa-database:before{content:"\f1c0"} +.fa-file-pdf-o:before{content:"\f1c1"} +.fa-file-word-o:before{content:"\f1c2"} +.fa-file-excel-o:before{content:"\f1c3"} +.fa-file-powerpoint-o:before{content:"\f1c4"} +.fa-file-photo-o:before,.fa-file-picture-o:before,.fa-file-image-o:before{content:"\f1c5"} +.fa-file-zip-o:before,.fa-file-archive-o:before{content:"\f1c6"} +.fa-file-sound-o:before,.fa-file-audio-o:before{content:"\f1c7"} +.fa-file-movie-o:before,.fa-file-video-o:before{content:"\f1c8"} +.fa-file-code-o:before{content:"\f1c9"} +.fa-vine:before{content:"\f1ca"} +.fa-codepen:before{content:"\f1cb"} +.fa-jsfiddle:before{content:"\f1cc"} +.fa-life-bouy:before,.fa-life-buoy:before,.fa-life-saver:before,.fa-support:before,.fa-life-ring:before{content:"\f1cd"} +.fa-circle-o-notch:before{content:"\f1ce"} +.fa-ra:before,.fa-rebel:before{content:"\f1d0"} +.fa-ge:before,.fa-empire:before{content:"\f1d1"} +.fa-git-square:before{content:"\f1d2"} +.fa-git:before{content:"\f1d3"} +.fa-hacker-news:before{content:"\f1d4"} +.fa-tencent-weibo:before{content:"\f1d5"} +.fa-qq:before{content:"\f1d6"} +.fa-wechat:before,.fa-weixin:before{content:"\f1d7"} +.fa-send:before,.fa-paper-plane:before{content:"\f1d8"} +.fa-send-o:before,.fa-paper-plane-o:before{content:"\f1d9"} +.fa-history:before{content:"\f1da"} +.fa-circle-thin:before{content:"\f1db"} +.fa-header:before{content:"\f1dc"} +.fa-paragraph:before{content:"\f1dd"} +.fa-sliders:before{content:"\f1de"} +.fa-share-alt:before{content:"\f1e0"} +.fa-share-alt-square:before{content:"\f1e1"} +.fa-bomb:before{content:"\f1e2"} +.fa-soccer-ball-o:before,.fa-futbol-o:before{content:"\f1e3"} +.fa-tty:before{content:"\f1e4"} +.fa-binoculars:before{content:"\f1e5"} +.fa-plug:before{content:"\f1e6"} +.fa-slideshare:before{content:"\f1e7"} +.fa-twitch:before{content:"\f1e8"} +.fa-yelp:before{content:"\f1e9"} +.fa-newspaper-o:before{content:"\f1ea"} +.fa-wifi:before{content:"\f1eb"} +.fa-calculator:before{content:"\f1ec"} +.fa-paypal:before{content:"\f1ed"} +.fa-google-wallet:before{content:"\f1ee"} +.fa-cc-visa:before{content:"\f1f0"} +.fa-cc-mastercard:before{content:"\f1f1"} +.fa-cc-discover:before{content:"\f1f2"} +.fa-cc-amex:before{content:"\f1f3"} +.fa-cc-paypal:before{content:"\f1f4"} +.fa-cc-stripe:before{content:"\f1f5"} +.fa-bell-slash:before{content:"\f1f6"} +.fa-bell-slash-o:before{content:"\f1f7"} +.fa-trash:before{content:"\f1f8"} +.fa-copyright:before{content:"\f1f9"} +.fa-at:before{content:"\f1fa"} +.fa-eyedropper:before{content:"\f1fb"} +.fa-paint-brush:before{content:"\f1fc"} +.fa-birthday-cake:before{content:"\f1fd"} +.fa-area-chart:before{content:"\f1fe"} +.fa-pie-chart:before{content:"\f200"} +.fa-line-chart:before{content:"\f201"} +.fa-lastfm:before{content:"\f202"} +.fa-lastfm-square:before{content:"\f203"} +.fa-toggle-off:before{content:"\f204"} +.fa-toggle-on:before{content:"\f205"} +.fa-bicycle:before{content:"\f206"} +.fa-bus:before{content:"\f207"} +.fa-ioxhost:before{content:"\f208"} +.fa-angellist:before{content:"\f209"} +.fa-cc:before{content:"\f20a"} +.fa-shekel:before,.fa-sheqel:before,.fa-ils:before{content:"\f20b"} +.fa-meanpath:before{content:"\f20c"} .fa-icon{font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale} .select2-container{margin:0;position:relative;display:inline-block;zoom:1;*display:inline;vertical-align:middle} .select2-container,.select2-drop,.select2-search,.select2-search input{-webkit-box-sizing:border-box;-moz-box-sizing:border-box;box-sizing:border-box;} @@ -1610,7 +1720,7 @@ .unified-panel-footer{-webkit-user-select:none;-moz-user-select:none;-ms-user-select:none;-o-user-select:none;user-select:none;position:absolute;bottom:0;height:25px;line-height:25px;width:100%;z-index:1000;border-top:solid #999 1px;background:#eee;color:#555}.unified-panel-footer a{color:#555} .unified-panel-footer .drag{position:absolute;top:0;right:0;padding:0 5px;text-align:center;height:25px;width:20px;background-image:url(../images/visualization/draggable_horizontal.png);background-repeat:no-repeat;background-position:50% 50%;cursor:w-resize} #right>.unified-panel-footer .drag{left:0} -.panel-collapse{-webkit-user-select:none;-moz-user-select:none;-ms-user-select:none;-o-user-select:none;user-select:none;position:absolute;width:100%;z-index:1000;background:#eee;color:#555;font-size:1.3333333333333333em;font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale;z-index:201;display:block;position:fixed;left:0;top:inherit;bottom:0;padding:0 5px;text-align:center;height:25px;line-height:25px;width:20px;background:none;border-right:solid #999 1px;border-top:solid #999 1px;background:#eee}.panel-collapse a{color:#555} +.panel-collapse{-webkit-user-select:none;-moz-user-select:none;-ms-user-select:none;-o-user-select:none;user-select:none;position:absolute;width:100%;z-index:1000;background:#eee;color:#555;font-size:1.3333333333333333em;display:inline-block;font:normal normal normal 14px/1 FontAwesome;font-size:inherit;text-rendering:auto;font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale;z-index:201;display:block;position:fixed;left:0;top:inherit;bottom:0;padding:0 5px;text-align:center;height:25px;line-height:25px;width:20px;background:none;border-right:solid #999 1px;border-top:solid #999 1px;background:#eee}.panel-collapse a{color:#555} .panel-collapse .drag{position:absolute;top:0;right:0;padding:0 5px;text-align:center;height:25px;width:20px;background-image:url(../images/visualization/draggable_horizontal.png);background-repeat:no-repeat;background-position:50% 50%;cursor:w-resize} .panel-collapse:before{content:'\f053'} .panel-collapse.hidden:before{content:'\f054'} @@ -1687,7 +1797,7 @@ .search-query{display:inline-block;padding:4px;font-size:12px;line-height:1.428571429;color:#555;border:1px solid #aaa;padding-left:14px !important;padding-right:14px;margin-bottom:0;-webkit-border-radius:14px;-moz-border-radius:14px;border-radius:14px;max-width:auto} .search-query:focus{border-color:rgba(24,132,218,0.8);-webkit-box-shadow:inset 0 1px 1px rgba(0,0,0,0.075),0 0 8px rgba(82,168,236,0.6);box-shadow:inset 0 1px 1px rgba(0,0,0,0.075),0 0 8px rgba(82,168,236,0.6);outline:0;outline:thin dotted \9;} .search-spinner{position:absolute;display:none;right:6px;top:9px} -#search-clear-btn{position:absolute;right:6px;top:5px;display:block;font-size:1.4em;text-decoration:none;color:#888;font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale}#search-clear-btn:before{content:"\f057"} +#search-clear-btn{position:absolute;right:6px;top:9px;display:block;font-size:1.4em !important;text-decoration:none;color:#888;display:inline-block;font:normal normal normal 14px/1 FontAwesome;font-size:inherit;text-rendering:auto;-moz-osx-font-smoothing:grayscale;font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale}#search-clear-btn:before{content:"\f057"} .errormessagelarge,.warningmessagelarge,.donemessagelarge,.infomessagelarge{padding:15px;margin-bottom:17px;border:1px solid transparent;border-radius:3px;min-height:36px;padding-left:52px;background-image:url(error_large.png);background-repeat:no-repeat;background-position:10px 8px}.errormessagelarge h4,.warningmessagelarge h4,.donemessagelarge h4,.infomessagelarge h4{margin-top:0;color:inherit} .errormessagelarge .alert-link,.warningmessagelarge .alert-link,.donemessagelarge .alert-link,.infomessagelarge .alert-link{font-weight:bold} .errormessagelarge>p,.warningmessagelarge>p,.donemessagelarge>p,.infomessagelarge>p,.errormessagelarge>ul,.warningmessagelarge>ul,.donemessagelarge>ul,.infomessagelarge>ul{margin-bottom:0} @@ -1878,7 +1988,7 @@ .list-item .details .list-panel{margin-top:8px;border-radius:3px;background:white;padding:4px}.list-item .details .list-panel .list-items{border:1px solid #bfbfbf;border-radius:3px}.list-item .details .list-panel .list-items .list-item:first-child{border-top-width:0px;border-radius:3px 3px 0px 0px} .list-item .details .list-panel .list-items .list-item:last-child{border-bottom-width:0px;border-radius:0px 0px 3px 3px} .history-panel-header .panel-header-button{display:inline-block;height:22px;width:22px;text-align:center;line-height:19px;font-size:1.2em;padding:0px} -.state-icon{font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale;display:inline-block;margin-right:4px;vertical-align:middle;width:16px;height:16px;line-height:16px;text-align:center;font-size:16px} +.state-icon{font:normal normal normal 14px/1 FontAwesome;font-size:inherit;text-rendering:auto;font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale;display:inline-block;margin-right:4px;vertical-align:middle;width:16px;height:16px;line-height:16px;text-align:center;font-size:16px} .state-icon-running{-webkit-animation:spin 2s infinite linear;-moz-animation:spin 2s infinite linear;-o-animation:spin 2s infinite linear;animation:spin 2s infinite linear}@-moz-keyframes spin{0%{-moz-transform:rotate(0deg)} 100%{-moz-transform:rotate(359deg)}}@-webkit-keyframes spin{0%{-webkit-transform:rotate(0deg)} 100%{-webkit-transform:rotate(359deg)}}@-o-keyframes spin{0%{-o-transform:rotate(0deg)} 100%{-o-transform:rotate(359deg)}}@-ms-keyframes spin{0%{-ms-transform:rotate(0deg)} 100%{-ms-transform:rotate(359deg)}}@keyframes spin{0%{transform:rotate(0deg)} 100%{transform:rotate(359deg)}}.state-icon-running:before{content:"\f110"} .state-icon-upload{overflow:hidden}.state-icon-upload:before{display:inline-block;-webkit-animation:eclipse 2s infinite linear;-moz-animation:eclipse 2s infinite linear;-o-animation:eclipse 2s infinite linear;animation:eclipse 2s infinite linear;content:"\f062"}@-moz-keyframes eclipse{0%{-moz-transform:translate(0, 16px)} 100%{-moz-transform:translate(0, -16px)}}@-webkit-keyframes eclipse{0%{-webkit-transform:translate(0, 16px)} 100%{-webkit-transform:translate(0, -16px)}}@-o-keyframes eclipse{0%{-o-transform:translate(0, 16px)} 100%{-o-transform:translate(0, -16px)}}@-ms-keyframes eclipse{0%{-ms-transform:translate(0, 16px)} 100%{-ms-transform:translate(0, -16px)}}@keyframes eclipse{0%{transform:translate(0, 16px)} 100%{transform:translate(0, -16px)}} .state-icon-error{background-color:white;border-radius:8px}.state-icon-error:before{font-size:20px;line-height:16px;color:red;content:"\f057"} @@ -1974,9 +2084,9 @@ div.historyItem-setting_metadata{background:#ffc}div.historyItem-setting_metadata .state-icon{background-image:url(data_running.gif)} div.historyItem-upload{background:#a6e4f7}div.historyItem-upload .state-icon{background-image:url(data_upload.gif)} div.historyItem-queued{background:#eee}div.historyItem-queued .state-icon{background-image:url(sprite-history-states.png);background-position:0px -45px;width:15px;height:15px;height:15px} -div.historyItem-noPermission{filter:alpha(opacity=60);-moz-opacity:.60;opacity:.60}div.historyItem-noPermission .state-icon{line-height:16px;font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale}div.historyItem-noPermission .state-icon:before{content:"\f05e"} -div.historyItem-paused{background:#d9edf7}div.historyItem-paused .state-icon{line-height:16px;font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale}div.historyItem-paused .state-icon:before{content:"\f04c"} -div.historyItem-new .state-icon{line-height:16px;font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale}div.historyItem-new .state-icon:before{content:"\f071"} +div.historyItem-noPermission{filter:alpha(opacity=60);-moz-opacity:.60;opacity:.60}div.historyItem-noPermission .state-icon{line-height:16px;display:inline-block;font:normal normal normal 14px/1 FontAwesome;font-size:inherit;text-rendering:auto;-moz-osx-font-smoothing:grayscale;font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale}div.historyItem-noPermission .state-icon:before{content:"\f05e"} +div.historyItem-paused{background:#d9edf7}div.historyItem-paused .state-icon{line-height:16px;display:inline-block;font:normal normal normal 14px/1 FontAwesome;font-size:inherit;text-rendering:auto;-moz-osx-font-smoothing:grayscale;font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale}div.historyItem-paused .state-icon:before{content:"\f04c"} +div.historyItem-new .state-icon{line-height:16px;display:inline-block;font:normal normal normal 14px/1 FontAwesome;font-size:inherit;text-rendering:auto;-moz-osx-font-smoothing:grayscale;font-family:FontAwesome;-webkit-font-smoothing:antialiased;-moz-osx-font-smoothing:grayscale}div.historyItem-new .state-icon:before{content:"\f071"} div.historyItemTitleBar.spinner .state-icon{background:url(data_running.gif) 0 1px no-repeat !important} div.historyItemButtons{float:right}div.historyItemButtons .icon-button.display{background-image:url(sprite-history-buttons.png);background-position:0px -48px;width:16px;height:16px;height:16px} div.historyItemButtons .icon-button.display:hover{background-image:url(sprite-history-buttons.png);background-position:0px -64px;width:16px;height:16px;height:16px} diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/style/src/less/base.less --- a/static/style/src/less/base.less +++ b/static/style/src/less/base.less @@ -742,9 +742,9 @@ #search-clear-btn { position: absolute; right: 6px; - top: 5px; + top: 9px; display: block; - font-size: 1.4em; + font-size: 1.4em !important; text-decoration: none; color: #888; .fa-icon; diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/style/src/less/fontawesome/core.less --- a/static/style/src/less/fontawesome/core.less +++ b/static/style/src/less/fontawesome/core.less @@ -3,10 +3,9 @@ .@{fa-css-prefix} { display: inline-block; - font-family: FontAwesome; - font-style: normal; - font-weight: normal; - line-height: 1; + font: normal normal normal 14px/1 FontAwesome; // shortening font declaration + font-size: inherit; // can't have font-size inherit on line above, so need to override + text-rendering: auto; // optimizelegibility throws things off #1094 -webkit-font-smoothing: antialiased; -moz-osx-font-smoothing: grayscale; } diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/style/src/less/fontawesome/font-awesome.less --- a/static/style/src/less/fontawesome/font-awesome.less +++ b/static/style/src/less/fontawesome/font-awesome.less @@ -1,38 +1,17 @@ /*! - * Font Awesome 4.0.1 - * the iconic font designed for Bootstrap - * ------------------------------------------------------------------------------ - * The full suite of pictographic icons, examples, and documentation can be - * found at http://fontawesome.io. Stay up to date on Twitter at - * http://twitter.com/fontawesome. - * - * License - * ------------------------------------------------------------------------------ - * - The Font Awesome font is licensed under SIL OFL 1.1 - - * http://scripts.sil.org/OFL - * - Font Awesome CSS, LESS, and SASS files are licensed under MIT License - - * http://opensource.org/licenses/mit-license.html - * - Font Awesome documentation licensed under CC BY 3.0 - - * http://creativecommons.org/licenses/by/3.0/ - * - Attribution is no longer required in Font Awesome 3.0, but much appreciated: - * "Font Awesome by Dave Gandy - http://fontawesome.io" - * - * Author - Dave Gandy - * ------------------------------------------------------------------------------ - * Email: dave(a)fontawesome.io - * Twitter: http://twitter.com/davegandy - * Work: Lead Product Designer @ Kyruus - http://kyruus.com + * Font Awesome 4.2.0 by @davegandy - http://fontawesome.io - @fontawesome + * License - http://fontawesome.io/license (Font: SIL OFL 1.1, CSS: MIT License) */ -@import "variables"; -@import "mixins"; -@import "path"; -@import "core"; -@import "larger"; -@import "fixed-width"; -@import "list"; -@import "bordered-pulled"; -@import "spinning"; -@import "rotated-flipped"; -@import "stacked"; -@import "icons"; +@import "variables.less"; +@import "mixins.less"; +@import "path.less"; +@import "core.less"; +@import "larger.less"; +@import "fixed-width.less"; +@import "list.less"; +@import "bordered-pulled.less"; +@import "spinning.less"; +@import "rotated-flipped.less"; +@import "stacked.less"; +@import "icons.less"; diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/style/src/less/fontawesome/icons.less --- a/static/style/src/less/fontawesome/icons.less +++ b/static/style/src/less/fontawesome/icons.less @@ -14,6 +14,8 @@ .@{fa-css-prefix}-th:before { content: @fa-var-th; } .@{fa-css-prefix}-th-list:before { content: @fa-var-th-list; } .@{fa-css-prefix}-check:before { content: @fa-var-check; } +.@{fa-css-prefix}-remove:before, +.@{fa-css-prefix}-close:before, .@{fa-css-prefix}-times:before { content: @fa-var-times; } .@{fa-css-prefix}-search-plus:before { content: @fa-var-search-plus; } .@{fa-css-prefix}-search-minus:before { content: @fa-var-search-minus; } @@ -63,6 +65,8 @@ .@{fa-css-prefix}-outdent:before { content: @fa-var-outdent; } .@{fa-css-prefix}-indent:before { content: @fa-var-indent; } .@{fa-css-prefix}-video-camera:before { content: @fa-var-video-camera; } +.@{fa-css-prefix}-photo:before, +.@{fa-css-prefix}-image:before, .@{fa-css-prefix}-picture-o:before { content: @fa-var-picture-o; } .@{fa-css-prefix}-pencil:before { content: @fa-var-pencil; } .@{fa-css-prefix}-map-marker:before { content: @fa-var-map-marker; } @@ -72,7 +76,7 @@ .@{fa-css-prefix}-pencil-square-o:before { content: @fa-var-pencil-square-o; } .@{fa-css-prefix}-share-square-o:before { content: @fa-var-share-square-o; } .@{fa-css-prefix}-check-square-o:before { content: @fa-var-check-square-o; } -.@{fa-css-prefix}-move:before { content: @fa-var-move; } +.@{fa-css-prefix}-arrows:before { content: @fa-var-arrows; } .@{fa-css-prefix}-step-backward:before { content: @fa-var-step-backward; } .@{fa-css-prefix}-fast-backward:before { content: @fa-var-fast-backward; } .@{fa-css-prefix}-backward:before { content: @fa-var-backward; } @@ -101,8 +105,8 @@ .@{fa-css-prefix}-arrow-down:before { content: @fa-var-arrow-down; } .@{fa-css-prefix}-mail-forward:before, .@{fa-css-prefix}-share:before { content: @fa-var-share; } -.@{fa-css-prefix}-resize-full:before { content: @fa-var-resize-full; } -.@{fa-css-prefix}-resize-small:before { content: @fa-var-resize-small; } +.@{fa-css-prefix}-expand:before { content: @fa-var-expand; } +.@{fa-css-prefix}-compress:before { content: @fa-var-compress; } .@{fa-css-prefix}-plus:before { content: @fa-var-plus; } .@{fa-css-prefix}-minus:before { content: @fa-var-minus; } .@{fa-css-prefix}-asterisk:before { content: @fa-var-asterisk; } @@ -125,9 +129,10 @@ .@{fa-css-prefix}-shopping-cart:before { content: @fa-var-shopping-cart; } .@{fa-css-prefix}-folder:before { content: @fa-var-folder; } .@{fa-css-prefix}-folder-open:before { content: @fa-var-folder-open; } -.@{fa-css-prefix}-resize-vertical:before { content: @fa-var-resize-vertical; } -.@{fa-css-prefix}-resize-horizontal:before { content: @fa-var-resize-horizontal; } -.@{fa-css-prefix}-bar-chart-o:before { content: @fa-var-bar-chart-o; } +.@{fa-css-prefix}-arrows-v:before { content: @fa-var-arrows-v; } +.@{fa-css-prefix}-arrows-h:before { content: @fa-var-arrows-h; } +.@{fa-css-prefix}-bar-chart-o:before, +.@{fa-css-prefix}-bar-chart:before { content: @fa-var-bar-chart; } .@{fa-css-prefix}-twitter-square:before { content: @fa-var-twitter-square; } .@{fa-css-prefix}-facebook-square:before { content: @fa-var-facebook-square; } .@{fa-css-prefix}-camera-retro:before { content: @fa-var-camera-retro; } @@ -175,8 +180,9 @@ .@{fa-css-prefix}-tasks:before { content: @fa-var-tasks; } .@{fa-css-prefix}-filter:before { content: @fa-var-filter; } .@{fa-css-prefix}-briefcase:before { content: @fa-var-briefcase; } -.@{fa-css-prefix}-fullscreen:before { content: @fa-var-fullscreen; } -.@{fa-css-prefix}-group:before { content: @fa-var-group; } +.@{fa-css-prefix}-arrows-alt:before { content: @fa-var-arrows-alt; } +.@{fa-css-prefix}-group:before, +.@{fa-css-prefix}-users:before { content: @fa-var-users; } .@{fa-css-prefix}-chain:before, .@{fa-css-prefix}-link:before { content: @fa-var-link; } .@{fa-css-prefix}-cloud:before { content: @fa-var-cloud; } @@ -189,7 +195,9 @@ .@{fa-css-prefix}-save:before, .@{fa-css-prefix}-floppy-o:before { content: @fa-var-floppy-o; } .@{fa-css-prefix}-square:before { content: @fa-var-square; } -.@{fa-css-prefix}-reorder:before { content: @fa-var-reorder; } +.@{fa-css-prefix}-navicon:before, +.@{fa-css-prefix}-reorder:before, +.@{fa-css-prefix}-bars:before { content: @fa-var-bars; } .@{fa-css-prefix}-list-ul:before { content: @fa-var-list-ul; } .@{fa-css-prefix}-list-ol:before { content: @fa-var-list-ol; } .@{fa-css-prefix}-strikethrough:before { content: @fa-var-strikethrough; } @@ -210,9 +218,9 @@ .@{fa-css-prefix}-unsorted:before, .@{fa-css-prefix}-sort:before { content: @fa-var-sort; } .@{fa-css-prefix}-sort-down:before, +.@{fa-css-prefix}-sort-desc:before { content: @fa-var-sort-desc; } +.@{fa-css-prefix}-sort-up:before, .@{fa-css-prefix}-sort-asc:before { content: @fa-var-sort-asc; } -.@{fa-css-prefix}-sort-up:before, -.@{fa-css-prefix}-sort-desc:before { content: @fa-var-sort-desc; } .@{fa-css-prefix}-envelope:before { content: @fa-var-envelope; } .@{fa-css-prefix}-linkedin:before { content: @fa-var-linkedin; } .@{fa-css-prefix}-rotate-left:before, @@ -240,8 +248,8 @@ .@{fa-css-prefix}-coffee:before { content: @fa-var-coffee; } .@{fa-css-prefix}-cutlery:before { content: @fa-var-cutlery; } .@{fa-css-prefix}-file-text-o:before { content: @fa-var-file-text-o; } -.@{fa-css-prefix}-building:before { content: @fa-var-building; } -.@{fa-css-prefix}-hospital:before { content: @fa-var-hospital; } +.@{fa-css-prefix}-building-o:before { content: @fa-var-building-o; } +.@{fa-css-prefix}-hospital-o:before { content: @fa-var-hospital-o; } .@{fa-css-prefix}-ambulance:before { content: @fa-var-ambulance; } .@{fa-css-prefix}-medkit:before { content: @fa-var-medkit; } .@{fa-css-prefix}-fighter-jet:before { content: @fa-var-fighter-jet; } @@ -271,8 +279,6 @@ .@{fa-css-prefix}-github-alt:before { content: @fa-var-github-alt; } .@{fa-css-prefix}-folder-o:before { content: @fa-var-folder-o; } .@{fa-css-prefix}-folder-open-o:before { content: @fa-var-folder-open-o; } -.@{fa-css-prefix}-expand-o:before { content: @fa-var-expand-o; } -.@{fa-css-prefix}-collapse-o:before { content: @fa-var-collapse-o; } .@{fa-css-prefix}-smile-o:before { content: @fa-var-smile-o; } .@{fa-css-prefix}-frown-o:before { content: @fa-var-frown-o; } .@{fa-css-prefix}-meh-o:before { content: @fa-var-meh-o; } @@ -282,8 +288,8 @@ .@{fa-css-prefix}-flag-checkered:before { content: @fa-var-flag-checkered; } .@{fa-css-prefix}-terminal:before { content: @fa-var-terminal; } .@{fa-css-prefix}-code:before { content: @fa-var-code; } +.@{fa-css-prefix}-mail-reply-all:before, .@{fa-css-prefix}-reply-all:before { content: @fa-var-reply-all; } -.@{fa-css-prefix}-mail-reply-all:before { content: @fa-var-mail-reply-all; } .@{fa-css-prefix}-star-half-empty:before, .@{fa-css-prefix}-star-half-full:before, .@{fa-css-prefix}-star-half-o:before { content: @fa-var-star-half-o; } @@ -313,10 +319,10 @@ .@{fa-css-prefix}-html5:before { content: @fa-var-html5; } .@{fa-css-prefix}-css3:before { content: @fa-var-css3; } .@{fa-css-prefix}-anchor:before { content: @fa-var-anchor; } -.@{fa-css-prefix}-unlock-o:before { content: @fa-var-unlock-o; } +.@{fa-css-prefix}-unlock-alt:before { content: @fa-var-unlock-alt; } .@{fa-css-prefix}-bullseye:before { content: @fa-var-bullseye; } -.@{fa-css-prefix}-ellipsis-horizontal:before { content: @fa-var-ellipsis-horizontal; } -.@{fa-css-prefix}-ellipsis-vertical:before { content: @fa-var-ellipsis-vertical; } +.@{fa-css-prefix}-ellipsis-h:before { content: @fa-var-ellipsis-h; } +.@{fa-css-prefix}-ellipsis-v:before { content: @fa-var-ellipsis-v; } .@{fa-css-prefix}-rss-square:before { content: @fa-var-rss-square; } .@{fa-css-prefix}-play-circle:before { content: @fa-var-play-circle; } .@{fa-css-prefix}-ticket:before { content: @fa-var-ticket; } @@ -410,3 +416,137 @@ .@{fa-css-prefix}-vimeo-square:before { content: @fa-var-vimeo-square; } .@{fa-css-prefix}-turkish-lira:before, .@{fa-css-prefix}-try:before { content: @fa-var-try; } +.@{fa-css-prefix}-plus-square-o:before { content: @fa-var-plus-square-o; } +.@{fa-css-prefix}-space-shuttle:before { content: @fa-var-space-shuttle; } +.@{fa-css-prefix}-slack:before { content: @fa-var-slack; } +.@{fa-css-prefix}-envelope-square:before { content: @fa-var-envelope-square; } +.@{fa-css-prefix}-wordpress:before { content: @fa-var-wordpress; } +.@{fa-css-prefix}-openid:before { content: @fa-var-openid; } +.@{fa-css-prefix}-institution:before, +.@{fa-css-prefix}-bank:before, +.@{fa-css-prefix}-university:before { content: @fa-var-university; } +.@{fa-css-prefix}-mortar-board:before, +.@{fa-css-prefix}-graduation-cap:before { content: @fa-var-graduation-cap; } +.@{fa-css-prefix}-yahoo:before { content: @fa-var-yahoo; } +.@{fa-css-prefix}-google:before { content: @fa-var-google; } +.@{fa-css-prefix}-reddit:before { content: @fa-var-reddit; } +.@{fa-css-prefix}-reddit-square:before { content: @fa-var-reddit-square; } +.@{fa-css-prefix}-stumbleupon-circle:before { content: @fa-var-stumbleupon-circle; } +.@{fa-css-prefix}-stumbleupon:before { content: @fa-var-stumbleupon; } +.@{fa-css-prefix}-delicious:before { content: @fa-var-delicious; } +.@{fa-css-prefix}-digg:before { content: @fa-var-digg; } +.@{fa-css-prefix}-pied-piper:before { content: @fa-var-pied-piper; } +.@{fa-css-prefix}-pied-piper-alt:before { content: @fa-var-pied-piper-alt; } +.@{fa-css-prefix}-drupal:before { content: @fa-var-drupal; } +.@{fa-css-prefix}-joomla:before { content: @fa-var-joomla; } +.@{fa-css-prefix}-language:before { content: @fa-var-language; } +.@{fa-css-prefix}-fax:before { content: @fa-var-fax; } +.@{fa-css-prefix}-building:before { content: @fa-var-building; } +.@{fa-css-prefix}-child:before { content: @fa-var-child; } +.@{fa-css-prefix}-paw:before { content: @fa-var-paw; } +.@{fa-css-prefix}-spoon:before { content: @fa-var-spoon; } +.@{fa-css-prefix}-cube:before { content: @fa-var-cube; } +.@{fa-css-prefix}-cubes:before { content: @fa-var-cubes; } +.@{fa-css-prefix}-behance:before { content: @fa-var-behance; } +.@{fa-css-prefix}-behance-square:before { content: @fa-var-behance-square; } +.@{fa-css-prefix}-steam:before { content: @fa-var-steam; } +.@{fa-css-prefix}-steam-square:before { content: @fa-var-steam-square; } +.@{fa-css-prefix}-recycle:before { content: @fa-var-recycle; } +.@{fa-css-prefix}-automobile:before, +.@{fa-css-prefix}-car:before { content: @fa-var-car; } +.@{fa-css-prefix}-cab:before, +.@{fa-css-prefix}-taxi:before { content: @fa-var-taxi; } +.@{fa-css-prefix}-tree:before { content: @fa-var-tree; } +.@{fa-css-prefix}-spotify:before { content: @fa-var-spotify; } +.@{fa-css-prefix}-deviantart:before { content: @fa-var-deviantart; } +.@{fa-css-prefix}-soundcloud:before { content: @fa-var-soundcloud; } +.@{fa-css-prefix}-database:before { content: @fa-var-database; } +.@{fa-css-prefix}-file-pdf-o:before { content: @fa-var-file-pdf-o; } +.@{fa-css-prefix}-file-word-o:before { content: @fa-var-file-word-o; } +.@{fa-css-prefix}-file-excel-o:before { content: @fa-var-file-excel-o; } +.@{fa-css-prefix}-file-powerpoint-o:before { content: @fa-var-file-powerpoint-o; } +.@{fa-css-prefix}-file-photo-o:before, +.@{fa-css-prefix}-file-picture-o:before, +.@{fa-css-prefix}-file-image-o:before { content: @fa-var-file-image-o; } +.@{fa-css-prefix}-file-zip-o:before, +.@{fa-css-prefix}-file-archive-o:before { content: @fa-var-file-archive-o; } +.@{fa-css-prefix}-file-sound-o:before, +.@{fa-css-prefix}-file-audio-o:before { content: @fa-var-file-audio-o; } +.@{fa-css-prefix}-file-movie-o:before, +.@{fa-css-prefix}-file-video-o:before { content: @fa-var-file-video-o; } +.@{fa-css-prefix}-file-code-o:before { content: @fa-var-file-code-o; } +.@{fa-css-prefix}-vine:before { content: @fa-var-vine; } +.@{fa-css-prefix}-codepen:before { content: @fa-var-codepen; } +.@{fa-css-prefix}-jsfiddle:before { content: @fa-var-jsfiddle; } +.@{fa-css-prefix}-life-bouy:before, +.@{fa-css-prefix}-life-buoy:before, +.@{fa-css-prefix}-life-saver:before, +.@{fa-css-prefix}-support:before, +.@{fa-css-prefix}-life-ring:before { content: @fa-var-life-ring; } +.@{fa-css-prefix}-circle-o-notch:before { content: @fa-var-circle-o-notch; } +.@{fa-css-prefix}-ra:before, +.@{fa-css-prefix}-rebel:before { content: @fa-var-rebel; } +.@{fa-css-prefix}-ge:before, +.@{fa-css-prefix}-empire:before { content: @fa-var-empire; } +.@{fa-css-prefix}-git-square:before { content: @fa-var-git-square; } +.@{fa-css-prefix}-git:before { content: @fa-var-git; } +.@{fa-css-prefix}-hacker-news:before { content: @fa-var-hacker-news; } +.@{fa-css-prefix}-tencent-weibo:before { content: @fa-var-tencent-weibo; } +.@{fa-css-prefix}-qq:before { content: @fa-var-qq; } +.@{fa-css-prefix}-wechat:before, +.@{fa-css-prefix}-weixin:before { content: @fa-var-weixin; } +.@{fa-css-prefix}-send:before, +.@{fa-css-prefix}-paper-plane:before { content: @fa-var-paper-plane; } +.@{fa-css-prefix}-send-o:before, +.@{fa-css-prefix}-paper-plane-o:before { content: @fa-var-paper-plane-o; } +.@{fa-css-prefix}-history:before { content: @fa-var-history; } +.@{fa-css-prefix}-circle-thin:before { content: @fa-var-circle-thin; } +.@{fa-css-prefix}-header:before { content: @fa-var-header; } +.@{fa-css-prefix}-paragraph:before { content: @fa-var-paragraph; } +.@{fa-css-prefix}-sliders:before { content: @fa-var-sliders; } +.@{fa-css-prefix}-share-alt:before { content: @fa-var-share-alt; } +.@{fa-css-prefix}-share-alt-square:before { content: @fa-var-share-alt-square; } +.@{fa-css-prefix}-bomb:before { content: @fa-var-bomb; } +.@{fa-css-prefix}-soccer-ball-o:before, +.@{fa-css-prefix}-futbol-o:before { content: @fa-var-futbol-o; } +.@{fa-css-prefix}-tty:before { content: @fa-var-tty; } +.@{fa-css-prefix}-binoculars:before { content: @fa-var-binoculars; } +.@{fa-css-prefix}-plug:before { content: @fa-var-plug; } +.@{fa-css-prefix}-slideshare:before { content: @fa-var-slideshare; } +.@{fa-css-prefix}-twitch:before { content: @fa-var-twitch; } +.@{fa-css-prefix}-yelp:before { content: @fa-var-yelp; } +.@{fa-css-prefix}-newspaper-o:before { content: @fa-var-newspaper-o; } +.@{fa-css-prefix}-wifi:before { content: @fa-var-wifi; } +.@{fa-css-prefix}-calculator:before { content: @fa-var-calculator; } +.@{fa-css-prefix}-paypal:before { content: @fa-var-paypal; } +.@{fa-css-prefix}-google-wallet:before { content: @fa-var-google-wallet; } +.@{fa-css-prefix}-cc-visa:before { content: @fa-var-cc-visa; } +.@{fa-css-prefix}-cc-mastercard:before { content: @fa-var-cc-mastercard; } +.@{fa-css-prefix}-cc-discover:before { content: @fa-var-cc-discover; } +.@{fa-css-prefix}-cc-amex:before { content: @fa-var-cc-amex; } +.@{fa-css-prefix}-cc-paypal:before { content: @fa-var-cc-paypal; } +.@{fa-css-prefix}-cc-stripe:before { content: @fa-var-cc-stripe; } +.@{fa-css-prefix}-bell-slash:before { content: @fa-var-bell-slash; } +.@{fa-css-prefix}-bell-slash-o:before { content: @fa-var-bell-slash-o; } +.@{fa-css-prefix}-trash:before { content: @fa-var-trash; } +.@{fa-css-prefix}-copyright:before { content: @fa-var-copyright; } +.@{fa-css-prefix}-at:before { content: @fa-var-at; } +.@{fa-css-prefix}-eyedropper:before { content: @fa-var-eyedropper; } +.@{fa-css-prefix}-paint-brush:before { content: @fa-var-paint-brush; } +.@{fa-css-prefix}-birthday-cake:before { content: @fa-var-birthday-cake; } +.@{fa-css-prefix}-area-chart:before { content: @fa-var-area-chart; } +.@{fa-css-prefix}-pie-chart:before { content: @fa-var-pie-chart; } +.@{fa-css-prefix}-line-chart:before { content: @fa-var-line-chart; } +.@{fa-css-prefix}-lastfm:before { content: @fa-var-lastfm; } +.@{fa-css-prefix}-lastfm-square:before { content: @fa-var-lastfm-square; } +.@{fa-css-prefix}-toggle-off:before { content: @fa-var-toggle-off; } +.@{fa-css-prefix}-toggle-on:before { content: @fa-var-toggle-on; } +.@{fa-css-prefix}-bicycle:before { content: @fa-var-bicycle; } +.@{fa-css-prefix}-bus:before { content: @fa-var-bus; } +.@{fa-css-prefix}-ioxhost:before { content: @fa-var-ioxhost; } +.@{fa-css-prefix}-angellist:before { content: @fa-var-angellist; } +.@{fa-css-prefix}-cc:before { content: @fa-var-cc; } +.@{fa-css-prefix}-shekel:before, +.@{fa-css-prefix}-sheqel:before, +.@{fa-css-prefix}-ils:before { content: @fa-var-ils; } +.@{fa-css-prefix}-meanpath:before { content: @fa-var-meanpath; } diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/style/src/less/fontawesome/list.less --- a/static/style/src/less/fontawesome/list.less +++ b/static/style/src/less/fontawesome/list.less @@ -14,6 +14,6 @@ top: (2em / 14); text-align: center; &.@{fa-css-prefix}-lg { - left: -@fa-li-width + (4em / 14); + left: (-@fa-li-width + (4em / 14)); } } diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/style/src/less/fontawesome/mixins.less --- a/static/style/src/less/fontawesome/mixins.less +++ b/static/style/src/less/fontawesome/mixins.less @@ -1,20 +1,25 @@ // Mixins // -------------------------- +.fa-icon() { + display: inline-block; + font: normal normal normal 14px/1 FontAwesome; // shortening font declaration + font-size: inherit; // can't have font-size inherit on line above, so need to override + text-rendering: auto; // optimizelegibility throws things off #1094 + -webkit-font-smoothing: antialiased; + -moz-osx-font-smoothing: grayscale; +} + .fa-icon-rotate(@degrees, @rotation) { filter: progid:DXImageTransform.Microsoft.BasicImage(rotation=@rotation); -webkit-transform: rotate(@degrees); - -moz-transform: rotate(@degrees); -ms-transform: rotate(@degrees); - -o-transform: rotate(@degrees); transform: rotate(@degrees); } .fa-icon-flip(@horiz, @vert, @rotation) { filter: progid:DXImageTransform.Microsoft.BasicImage(rotation=@rotation, mirror=1); -webkit-transform: scale(@horiz, @vert); - -moz-transform: scale(@horiz, @vert); -ms-transform: scale(@horiz, @vert); - -o-transform: scale(@horiz, @vert); transform: scale(@horiz, @vert); } diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/style/src/less/fontawesome/rotated-flipped.less --- a/static/style/src/less/fontawesome/rotated-flipped.less +++ b/static/style/src/less/fontawesome/rotated-flipped.less @@ -7,3 +7,14 @@ .@{fa-css-prefix}-flip-horizontal { .fa-icon-flip(-1, 1, 0); } .@{fa-css-prefix}-flip-vertical { .fa-icon-flip(1, -1, 2); } + +// Hook for IE8-9 +// ------------------------- + +:root .@{fa-css-prefix}-rotate-90, +:root .@{fa-css-prefix}-rotate-180, +:root .@{fa-css-prefix}-rotate-270, +:root .@{fa-css-prefix}-flip-horizontal, +:root .@{fa-css-prefix}-flip-vertical { + filter: none; +} diff -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae -r 5bdce43378bddc43988616a16b3fdb055c315d52 static/style/src/less/fontawesome/spinning.less --- a/static/style/src/less/fontawesome/spinning.less +++ b/static/style/src/less/fontawesome/spinning.less @@ -2,29 +2,28 @@ // -------------------------- .@{fa-css-prefix}-spin { - -webkit-animation: spin 2s infinite linear; - -moz-animation: spin 2s infinite linear; - -o-animation: spin 2s infinite linear; - animation: spin 2s infinite linear; + -webkit-animation: fa-spin 2s infinite linear; + animation: fa-spin 2s infinite linear; } -@-moz-keyframes spin { - 0% { -moz-transform: rotate(0deg); } - 100% { -moz-transform: rotate(359deg); } +@-webkit-keyframes fa-spin { + 0% { + -webkit-transform: rotate(0deg); + transform: rotate(0deg); + } + 100% { + -webkit-transform: rotate(359deg); + transform: rotate(359deg); + } } -@-webkit-keyframes spin { - 0% { -webkit-transform: rotate(0deg); } - 100% { -webkit-transform: rotate(359deg); } + +@keyframes fa-spin { + 0% { + -webkit-transform: rotate(0deg); + transform: rotate(0deg); + } + 100% { + -webkit-transform: rotate(359deg); + transform: rotate(359deg); + } } -@-o-keyframes spin { - 0% { -o-transform: rotate(0deg); } - 100% { -o-transform: rotate(359deg); } -} -@-ms-keyframes spin { - 0% { -ms-transform: rotate(0deg); } - 100% { -ms-transform: rotate(359deg); } -} -@keyframes spin { - 0% { transform: rotate(0deg); } - 100% { transform: rotate(359deg); } -} This diff is so big that we needed to truncate the remainder. Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: natefoo: Update tag latest_2014.10.06 for changeset 3e7adbbe91a0
by commits-noreply＠bitbucket.org 09 Dec '14

09 Dec '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/2db0fb9594d6/ Changeset: 2db0fb9594d6 Branch: stable User: natefoo Date: 2014-12-09 19:00:15+00:00 Summary: Update tag latest_2014.10.06 for changeset 3e7adbbe91a0 Affected #: 1 file diff -r 3e7adbbe91a06d30a96e7a7101707e040376aba1 -r 2db0fb9594d6c315e4e0a4be70f64373cfc708f6 .hgtags --- a/.hgtags +++ b/.hgtags @@ -20,4 +20,4 @@ ca45b78adb4152fc6e7395514d46eba6b7d0b838 release_2014.08.11 548ab24667d6206780237bd807f7d857a484c461 latest_2014.08.11 2092948937ac30ef82f71463a235c66d34987088 release_2014.10.06 -782cf1a1f6b56f8a9c0b3e5e9ffd29fd93b16ce3 latest_2014.10.06 +3e7adbbe91a06d30a96e7a7101707e040376aba1 latest_2014.10.06 Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: carlfeberhard: Client build: remove references to ui.js in client and templates; mv scripts/jq-plugins/ui to more generic/catch-all scripts/ui/
by commits-noreply＠bitbucket.org 09 Dec '14

09 Dec '14

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/336a1e96bf51/ Changeset: 336a1e96bf51 User: carlfeberhard Date: 2014-12-09 18:52:24+00:00 Summary: Client build: remove references to ui.js in client and templates; mv scripts/jq-plugins/ui to more generic/catch-all scripts/ui/ Affected #: 73 files diff -r 6f73d9d8de65e81d16049f4507777ca5df7dc1bf -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae client/galaxy/scripts/jq-plugins/ui/fa-icon-button.js --- a/client/galaxy/scripts/jq-plugins/ui/fa-icon-button.js +++ /dev/null @@ -1,48 +0,0 @@ -(function (root, factory) { - if (typeof define === 'function' && define.amd) { - define([], factory); - } else { - root.faIconButton = factory(); - } - -}(this, function () { -//============================================================================ - /** Returns a jQuery object containing a clickable font-awesome button. - * options: - * tooltipConfig : option map for bootstrap tool tip - * classes : array of class names (will always be classed as icon-btn) - * disabled : T/F - add the 'disabled' class? - * title : tooltip/title string - * target : optional href target - * href : optional href - * faIcon : which font awesome icon to use - * onclick : function to call when the button is clicked - */ - var faIconButton = function( options ){ - options = options || {}; - options.tooltipConfig = options.tooltipConfig || { placement: 'bottom' }; - - options.classes = [ 'icon-btn' ].concat( options.classes || [] ); - if( options.disabled ){ - options.classes.push( 'disabled' ); - } - - var html = [ - '<a class="', options.classes.join( ' ' ), '"', - (( options.title )?( ' title="' + options.title + '"' ):( '' )), - (( !options.disabled && options.target )? ( ' target="' + options.target + '"' ):( '' )), - ' href="', (( !options.disabled && options.href )?( options.href ):( 'javascript:void(0);' )), '">', - // could go with something less specific here - like 'html' - '<span class="fa ', options.faIcon, '"></span>', - '</a>' - ].join( '' ); - var $button = $( html ).tooltip( options.tooltipConfig ); - if( _.isFunction( options.onclick ) ){ - $button.click( options.onclick ); - } - return $button; - }; - -//============================================================================ - return faIconButton; -})); diff -r 6f73d9d8de65e81d16049f4507777ca5df7dc1bf -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae client/galaxy/scripts/jq-plugins/ui/filter-control.js --- a/client/galaxy/scripts/jq-plugins/ui/filter-control.js +++ /dev/null @@ -1,204 +0,0 @@ -// from: https://raw.githubusercontent.com/umdjs/umd/master/jqueryPlugin.js -// Uses AMD or browser globals to create a jQuery plugin. -(function (factory) { - if (typeof define === 'function' && define.amd) { - // AMD. Register as an anonymous module. - define(['jquery'], factory); - } else { - // Browser globals - factory(jQuery); - } - -}(function ($) { - //============================================================================== - /** - * Template function that produces a bootstrap dropdown to replace the - * vanilla HTML select input. Pass in an array of options and an initial selection: - * $( '.my-div' ).append( dropDownSelect( [ 'option1', 'option2' ], 'option2' ); - * - * When the user changes the selected option a 'change.dropdown-select' event will - * fire with both the jq event and the new selection text as arguments. - * - * Get the currently selected choice using: - * var userChoice = $( '.my-div .dropdown-select .dropdown-select-selected' ).text(); - * - */ - function dropDownSelect( options, selected ){ - // replacement for vanilla select element using bootstrap dropdowns instead - selected = selected || (( !_.isEmpty( options ) )?( options[0] ):( '' )); - var $select = $([ - '<div class="dropdown-select btn-group">', - '<button type="button" class="btn btn-default">', - '<span class="dropdown-select-selected">' + selected + '</span>', - '</button>', - '</div>' - ].join( '\n' )); - - // if there's only one option, do not style/create as buttons, dropdown - use simple span - // otherwise, a dropdown displaying the current selection - if( options && options.length > 1 ){ - $select.find( 'button' ) - .addClass( 'dropdown-toggle' ).attr( 'data-toggle', 'dropdown' ) - .append( ' <span class="caret"></span>' ); - $select.append([ - '<ul class="dropdown-menu" role="menu">', - _.map( options, function( option ){ - return [ - '<li><a href="javascript:void(0)">', option, '</a></li>' - ].join( '' ); - }).join( '\n' ), - '</ul>' - ].join( '\n' )); - } - - // trigger 'change.dropdown-select' when a new selection is made using the dropdown - function selectThis( event ){ - var $this = $( this ), - $select = $this.parents( '.dropdown-select' ), - newSelection = $this.text(); - $select.find( '.dropdown-select-selected' ).text( newSelection ); - $select.trigger( 'change.dropdown-select', newSelection ); - } - - $select.find( 'a' ).click( selectThis ); - return $select; - } - - //============================================================================== - /** - * Creates a three part bootstrap button group (key, op, value) meant to - * allow the user control of filters (e.g. { key: 'name', op: 'contains', value: 'my_history' }) - * - * Each field uses a dropDownSelect (from ui.js) to allow selection - * (with the 'value' field appearing as an input when set to do so). - * - * Any change or update in any of the fields will trigger a 'change.filter-control' - * event which will be passed an object containing those fields (as the example above). - * - * Pass in an array of possible filter objects to control what the user can select. - * Each filter object should have: - * key : generally the attribute name on which to filter something - * ops : an array of 1 or more filter operations (e.g. [ 'is', '<', 'contains', '!=' ]) - * values (optional) : an array of possible values for the filter (e.g. [ 'true', 'false' ]) - * @example: - * $( '.my-div' ).filterControl({ - * filters : [ - * { key: 'name', ops: [ 'is exactly', 'contains' ] } - * { key: 'deleted', ops: [ 'is' ], values: [ 'true', 'false' ] } - * ] - * }); - * // after initialization, you can prog. get the current value using: - * $( '.my-div' ).filterControl( 'val' ) - * - */ - function FilterControl( element, options ){ - return this.init( element, options ); - } - /** the data key that this object will be stored under in the DOM element */ - FilterControl.prototype.DATA_KEY = 'filter-control'; - - /** parses options, sets up instance vars, and does initial render */ - FilterControl.prototype.init = function _init( element, options ){ - options = options || { filters: [] }; - this.$element = $( element ).addClass( 'filter-control btn-group' ); - this.options = jQuery.extend( true, {}, this.defaults, options ); - - this.currFilter = this.options.filters[0]; - return this.render(); - }; - - /** render (or re-render) the controls on the element */ - FilterControl.prototype.render = function _render(){ - this.$element.empty() - .append([ this._renderKeySelect(), this._renderOpSelect(), this._renderValueInput() ]); - return this; - }; - - /** render the key dropDownSelect, bind a change event to it, and return it */ - FilterControl.prototype._renderKeySelect = function __renderKeySelect(){ - var filterControl = this; - var keys = this.options.filters.map( function( filter ){ - return filter.key; - }); - this.$keySelect = dropDownSelect( keys, this.currFilter.key ) - .addClass( 'filter-control-key' ) - .on( 'change.dropdown-select', function( event, selection ){ - filterControl.currFilter = _.findWhere( filterControl.options.filters, { key: selection }); - // when the filter/key changes, re-render the control entirely - filterControl.render()._triggerChange(); - }); - return this.$keySelect; - }; - - /** render the op dropDownSelect, bind a change event to it, and return it */ - FilterControl.prototype._renderOpSelect = function __renderOpSelect(){ - var filterControl = this, - ops = this.currFilter.ops; - //TODO: search for currOp in avail. ops: use that for selected if there; otherwise: first op - this.$opSelect = dropDownSelect( ops, ops[0] ) - .addClass( 'filter-control-op' ) - .on( 'change.dropdown-select', function( event, selection ){ - filterControl._triggerChange(); - }); - return this.$opSelect; - }; - - /** render the value control, bind a change event to it, and return it */ - FilterControl.prototype._renderValueInput = function __renderValueInput(){ - var filterControl = this; - // if a values attribute is prov. on the filter - make this a dropdown; otherwise, use an input - if( this.currFilter.values ){ - this.$valueSelect = dropDownSelect( this.currFilter.values, this.currFilter.values[0] ) - .on( 'change.dropdown-select', function( event, selection ){ - filterControl._triggerChange(); - }); - } else { - //TODO: allow setting a value type (mainly for which html5 input to use: range, number, etc.) - this.$valueSelect = $( '<input/>' ).addClass( 'form-control' ) - .on( 'change', function( event, value ){ - filterControl._triggerChange(); - }); - } - this.$valueSelect.addClass( 'filter-control-value' ); - return this.$valueSelect; - }; - - /** return the current state/setting for the filter as a three key object: key, op, value */ - FilterControl.prototype.val = function _val(){ - var key = this.$element.find( '.filter-control-key .dropdown-select-selected' ).text(), - op = this.$element.find( '.filter-control-op .dropdown-select-selected' ).text(), - // handle either a dropdown or plain input - $value = this.$element.find( '.filter-control-value' ), - value = ( $value.hasClass( 'dropdown-select' ) )?( $value.find( '.dropdown-select-selected' ).text() ) - :( $value.val() ); - return { key: key, op: op, value: value }; - }; - - // single point of change for change event - FilterControl.prototype._triggerChange = function __triggerChange(){ - this.$element.trigger( 'change.filter-control', this.val() ); - }; - - // as jq plugin - jQuery.fn.extend({ - filterControl : function $filterControl( options ){ - var nonOptionsArgs = jQuery.makeArray( arguments ).slice( 1 ); - return this.map( function(){ - var $this = $( this ), - data = $this.data( FilterControl.prototype.DATA_KEY ); - - if( jQuery.type( options ) === 'object' ){ - data = new FilterControl( $this, options ); - $this.data( FilterControl.prototype.DATA_KEY, data ); - } - if( data && jQuery.type( options ) === 'string' ){ - var fn = data[ options ]; - if( jQuery.type( fn ) === 'function' ){ - return fn.apply( data, nonOptionsArgs ); - } - } - return this; - }); - } - }); -})); diff -r 6f73d9d8de65e81d16049f4507777ca5df7dc1bf -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae client/galaxy/scripts/jq-plugins/ui/loading-indicator.js --- a/client/galaxy/scripts/jq-plugins/ui/loading-indicator.js +++ /dev/null @@ -1,98 +0,0 @@ -(function (root, factory) { - if (typeof define === 'function' && define.amd) { - // AMD. Register as an anonymous module. - define([], factory); - } else { - // Browser globals - root.LoadingIndicator = factory(); - } - -//============================================================================ -}(this, function () { - //TODO: too specific to history panel - function LoadingIndicator( $where, options ){ - - var self = this; - // defaults - options = jQuery.extend({ - cover : false - }, options || {} ); - - function render(){ - var html = [ - '<div class="loading-indicator">', - '<div class="loading-indicator-text">', - '<span class="fa fa-spinner fa-spin fa-lg"></span>', - '<span class="loading-indicator-message">loading...</span>', - '</div>', - '</div>' - ].join( '\n' ); - - var $indicator = $( html ).hide().css( options.css || { - position : 'fixed' - }), - $text = $indicator.children( '.loading-indicator-text' ); - - if( options.cover ){ - $indicator.css({ - 'z-index' : 2, - top : $where.css( 'top' ), - bottom : $where.css( 'bottom' ), - left : $where.css( 'left' ), - right : $where.css( 'right' ), - opacity : 0.5, - 'background-color': 'white', - 'text-align': 'center' - }); - $text = $indicator.children( '.loading-indicator-text' ).css({ - 'margin-top' : '20px' - }); - - } else { - $text = $indicator.children( '.loading-indicator-text' ).css({ - margin : '12px 0px 0px 10px', - opacity : '0.85', - color : 'grey' - }); - $text.children( '.loading-indicator-message' ).css({ - margin : '0px 8px 0px 0px', - 'font-style' : 'italic' - }); - } - return $indicator; - } - - self.show = function( msg, speed, callback ){ - msg = msg || 'loading...'; - speed = speed || 'fast'; - // remove previous - $where.parent().find( '.loading-indicator' ).remove(); - // since position is fixed - we insert as sibling - self.$indicator = render().insertBefore( $where ); - self.message( msg ); - self.$indicator.fadeIn( speed, callback ); - return self; - }; - - self.message = function( msg ){ - self.$indicator.find( 'i' ).text( msg ); - }; - - self.hide = function( speed, callback ){ - speed = speed || 'fast'; - if( self.$indicator && self.$indicator.size() ){ - self.$indicator.fadeOut( speed, function(){ - self.$indicator.remove(); - if( callback ){ callback(); } - }); - } else { - if( callback ){ callback(); } - } - return self; - }; - return self; - } - -//============================================================================ - return LoadingIndicator; -})); diff -r 6f73d9d8de65e81d16049f4507777ca5df7dc1bf -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae client/galaxy/scripts/jq-plugins/ui/mode-button.js --- a/client/galaxy/scripts/jq-plugins/ui/mode-button.js +++ /dev/null @@ -1,191 +0,0 @@ -// from: https://raw.githubusercontent.com/umdjs/umd/master/jqueryPlugin.js -// Uses AMD or browser globals to create a jQuery plugin. -(function (factory) { - if (typeof define === 'function' && define.amd) { - //TODO: So...this turns out to be an all or nothing thing. If I load jQuery in the define below, it will - // (of course) wipe the old jquery *and all the plugins loaded into it*. So the define below *is still - // relying on jquery being loaded globally* in order to preserve plugins. - define([], factory); - } else { - // Browser globals - factory(jQuery); - } - -}(function () { - - /** Multi 'mode' button (or any element really) that changes the html - * contents of itself when clicked. Pass in an ordered list of - * objects with 'html' and (optional) onclick functions. - * - * When clicked in a particular node, the onclick function will - * be called (with the element as this) and the element will - * switch to the next mode, replacing its html content with - * that mode's html. - * - * If there is no next mode, the element will switch back to - * the first mode. - * @example: - * $( '.myElement' ).modeButton({ - * modes : [ - * { - * mode: 'bler', - * html: '<h5>Bler</h5>', - * onclick : function(){ - * $( 'body' ).css( 'background-color', 'red' ); - * } - * }, - * { - * mode: 'bloo', - * html: '<h4>Bloo</h4>', - * onclick : function(){ - * $( 'body' ).css( 'background-color', 'blue' ); - * } - * }, - * { - * mode: 'blah', - * html: '<h3>Blah</h3>', - * onclick : function(){ - * $( 'body' ).css( 'background-color', 'grey' ); - * } - * }, - * ] - * }); - * $( '.myElement' ).modeButton( 'callModeFn', 'bler' ); - */ - /** constructor */ - function ModeButton( element, options ){ - this.currModeIndex = 0; - return this._init( element, options ); - } - - /** html5 data key to store this object inside an element */ - ModeButton.prototype.DATA_KEY = 'mode-button'; - /** default options */ - ModeButton.prototype.defaults = { - switchModesOnClick : true - }; - - // ---- private interface - /** set up options, intial mode, and the click handler */ - ModeButton.prototype._init = function _init( element, options ){ - //console.debug( 'ModeButton._init:', element, options ); - options = options || {}; - this.$element = $( element ); - this.options = $.extend( true, {}, this.defaults, options ); - if( !options.modes ){ - throw new Error( 'ModeButton requires a "modes" array' ); - } - - var modeButton = this; - this.$element.click( function _ModeButtonClick( event ){ - // call the curr mode fn - modeButton.callModeFn(); - // inc the curr mode index - if( modeButton.options.switchModesOnClick ){ modeButton._incModeIndex(); } - // set the element html - $( this ).html( modeButton.options.modes[ modeButton.currModeIndex ].html ); - }); - return this.reset(); - }; - /** increment the mode index to the next in the array, looping back to zero if at the last */ - ModeButton.prototype._incModeIndex = function _incModeIndex(){ - this.currModeIndex += 1; - if( this.currModeIndex >= this.options.modes.length ){ - this.currModeIndex = 0; - } - return this; - }; - /** get the mode index in the modes array for the given key (mode name) */ - ModeButton.prototype._getModeIndex = function _getModeIndex( modeKey ){ - for( var i=0; i<this.options.modes.length; i+=1 ){ - if( this.options.modes[ i ].mode === modeKey ){ return i; } - } - throw new Error( 'mode not found: ' + modeKey ); - }; - /** set the current mode to the one with the given index and set button html */ - ModeButton.prototype._setModeByIndex = function _setModeByIndex( index ){ - var newMode = this.options.modes[ index ]; - if( !newMode ){ - throw new Error( 'mode index not found: ' + index ); - } - this.currModeIndex = index; - if( newMode.html ){ - this.$element.html( newMode.html ); - } - return this; - }; - - // ---- public interface - /** get the current mode object (not just the mode name) */ - ModeButton.prototype.currentMode = function currentMode(){ - return this.options.modes[ this.currModeIndex ]; - }; - /** return the mode key of the current mode */ - ModeButton.prototype.current = function current(){ - // sugar for returning mode name - return this.currentMode().mode; - }; - /** get the mode with the given modeKey or the current mode if modeKey is undefined */ - ModeButton.prototype.getMode = function getMode( modeKey ){ - if( !modeKey ){ return this.currentMode(); } - return this.options.modes[( this._getModeIndex( modeKey ) )]; - }; - /** T/F if the button has the given mode */ - ModeButton.prototype.hasMode = function hasMode( modeKey ){ - try { - return !!this.getMode( modeKey ); - } catch( err ){} - return false; - }; - /** set the current mode to the mode with the given name */ - ModeButton.prototype.setMode = function setMode( modeKey ){ - return this._setModeByIndex( this._getModeIndex( modeKey ) ); - }; - /** reset to the initial mode */ - ModeButton.prototype.reset = function reset(){ - this.currModeIndex = 0; - if( this.options.initialMode ){ - this.currModeIndex = this._getModeIndex( this.options.initialMode ); - } - return this._setModeByIndex( this.currModeIndex ); - }; - /** manually call the click handler of the given mode */ - ModeButton.prototype.callModeFn = function callModeFn( modeKey ){ - var modeFn = this.getMode( modeKey ).onclick; - if( modeFn && $.type( modeFn === 'function' ) ){ - // call with the element as context (std jquery pattern) - return modeFn.call( this.$element.get(0) ); - } - return undefined; - }; - - // as jq plugin - $.fn.modeButton = function $modeButton( options ){ - if( !this.size() ){ return this; } - - //TODO: does map still work with jq multi selection (i.e. $( '.class-for-many-btns' ).modeButton)? - if( $.type( options ) === 'object' ){ - return this.map( function(){ - var $this = $( this ); - $this.data( 'mode-button', new ModeButton( $this, options ) ); - return this; - }); - } - - var $first = $( this[0] ), - button = $first.data( 'mode-button' ); - - if( !button ){ - throw new Error( 'modeButton needs an options object or string name of a function' ); - } - - if( button && $.type( options ) === 'string' ){ - var fnName = options; - if( button && $.type( button[ fnName ] ) === 'function' ){ - return button[ fnName ].apply( button, $.makeArray( arguments ).slice( 1 ) ); - } - } - return button; - }; - -})); diff -r 6f73d9d8de65e81d16049f4507777ca5df7dc1bf -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae client/galaxy/scripts/jq-plugins/ui/pagination.js --- a/client/galaxy/scripts/jq-plugins/ui/pagination.js +++ /dev/null @@ -1,226 +0,0 @@ -// from: https://raw.githubusercontent.com/umdjs/umd/master/jqueryPlugin.js -// Uses AMD or browser globals to create a jQuery plugin. -(function (factory) { - if (typeof define === 'function' && define.amd) { - // AMD. Register as an anonymous module. - define(['jquery'], factory); - } else { - // Browser globals - factory(jQuery); - } - -}(function ($) { - - /** Builds (twitter bootstrap styled) pagination controls. - * If the totalDataSize is not null, a horizontal list of page buttons is displayed. - * If totalDataSize is null, two links ('Prev' and 'Next) are displayed. - * When pages are changed, a 'pagination.page-change' event is fired - * sending the event and the (0-based) page requested. - */ - function Pagination( element, options ){ - /** the total number of pages */ - this.numPages = null; - /** the current, active page */ - this.currPage = 0; - return this.init( element, options ); - } - - /** data key under which this object will be stored in the element */ - Pagination.prototype.DATA_KEY = 'pagination'; - /** default options */ - Pagination.prototype.defaults = { - /** which page to begin at */ - startingPage : 0, - /** number of data per page */ - perPage : 20, - /** the total number of data (null == unknown) */ - totalDataSize : null, - /** size of current data on current page */ - currDataSize : null - }; - - /** init the control, calc numPages if possible, and render - * @param {jQuery} the element that will contain the pagination control - * @param {Object} options a map containing overrides to the pagination default options - */ - Pagination.prototype.init = function _init( $element, options ){ - options = options || {}; - this.$element = $element; - this.options = jQuery.extend( true, {}, this.defaults, options ); - - this.currPage = this.options.startingPage; - if( this.options.totalDataSize !== null ){ - this.numPages = Math.ceil( this.options.totalDataSize / this.options.perPage ); - // limit currPage by numPages - if( this.currPage >= this.numPages ){ - this.currPage = this.numPages - 1; - } - } - //console.debug( 'Pagination.prototype.init:', this.$element, this.currPage ); - //console.debug( JSON.stringify( this.options ) ); - - // bind to data of element - this.$element.data( Pagination.prototype.DATA_KEY, this ); - - this._render(); - return this; - }; - - /** helper to create a simple li + a combo */ - function _make$Li( contents ){ - return $([ - '<li><a href="javascript:void(0);">', contents, '</a></li>' - ].join( '' )); - } - - /** render previous and next pagination buttons */ - Pagination.prototype._render = function __render(){ - // no data - no pagination - if( this.options.totalDataSize === 0 ){ return this; } - // only one page - if( this.numPages === 1 ){ return this; } - - // when the number of pages are known, render each page as a link - if( this.numPages > 0 ){ - this._renderPages(); - this._scrollToActivePage(); - - // when the number of pages is not known, render previous or next - } else { - this._renderPrevNext(); - } - return this; - }; - - /** render previous and next pagination buttons */ - Pagination.prototype._renderPrevNext = function __renderPrevNext(){ - var pagination = this, - $prev = _make$Li( 'Prev' ), - $next = _make$Li( 'Next' ), - $paginationContainer = $( '<ul/>' ).addClass( 'pagination pagination-prev-next' ); - - // disable if it either end - if( this.currPage === 0 ){ - $prev.addClass( 'disabled' ); - } else { - $prev.click( function(){ pagination.prevPage(); }); - } - if( ( this.numPages && this.currPage === ( this.numPages - 1 ) ) - || ( this.options.currDataSize && this.options.currDataSize < this.options.perPage ) ){ - $next.addClass( 'disabled' ); - } else { - $next.click( function(){ pagination.nextPage(); }); - } - - this.$element.html( $paginationContainer.append([ $prev, $next ]) ); - //console.debug( this.$element, this.$element.html() ); - return this.$element; - }; - - /** render page links for each possible page (if we can) */ - Pagination.prototype._renderPages = function __renderPages(){ - // it's better to scroll the control and let the user see all pages - // than to force her/him to change pages in order to find the one they want (as traditional << >> does) - var pagination = this, - $scrollingContainer = $( '<div>' ).addClass( 'pagination-scroll-container' ), - $paginationContainer = $( '<ul/>' ).addClass( 'pagination pagination-page-list' ), - page$LiClick = function( ev ){ - pagination.goToPage( $( this ).data( 'page' ) ); - }; - - for( var i=0; i<this.numPages; i+=1 ){ - // add html5 data tag 'page' for later click event handler use - var $pageLi = _make$Li( i + 1 ).attr( 'data-page', i ).click( page$LiClick ); - // highlight the current page - if( i === this.currPage ){ - $pageLi.addClass( 'active' ); - } - //console.debug( '\t', $pageLi ); - $paginationContainer.append( $pageLi ); - } - return this.$element.html( $scrollingContainer.html( $paginationContainer ) ); - }; - - /** scroll scroll-container (if any) to show the active page */ - Pagination.prototype._scrollToActivePage = function __scrollToActivePage(){ - // scroll to show active page in center of scrollable area - var $container = this.$element.find( '.pagination-scroll-container' ); - // no scroll container : don't scroll - if( !$container.size() ){ return this; } - - var $activePage = this.$element.find( 'li.active' ), - midpoint = $container.width() / 2; - //console.debug( $container, $activePage, midpoint ); - $container.scrollLeft( $container.scrollLeft() + $activePage.position().left - midpoint ); - return this; - }; - - /** go to a certain page */ - Pagination.prototype.goToPage = function goToPage( page ){ - if( page <= 0 ){ page = 0; } - if( this.numPages && page >= this.numPages ){ page = this.numPages - 1; } - if( page === this.currPage ){ return this; } - - //console.debug( '\t going to page ' + page ) - this.currPage = page; - this.$element.trigger( 'pagination.page-change', this.currPage ); - //console.info( 'pagination:page-change', this.currPage ); - this._render(); - return this; - }; - - /** go to the previous page */ - Pagination.prototype.prevPage = function prevPage(){ - return this.goToPage( this.currPage - 1 ); - }; - - /** go to the next page */ - Pagination.prototype.nextPage = function nextPage(){ - return this.goToPage( this.currPage + 1 ); - }; - - /** return the current page */ - Pagination.prototype.page = function page(){ - return this.currPage; - }; - - // alternate constructor invocation - Pagination.create = function _create( $element, options ){ - return new Pagination( $element, options ); - }; - - // as jq plugin - jQuery.fn.extend({ - pagination : function $pagination( options ){ - var nonOptionsArgs = jQuery.makeArray( arguments ).slice( 1 ); - - // if passed an object - use that as an options map to create pagination for each selected - if( jQuery.type( options ) === 'object' ){ - return this.map( function(){ - Pagination.create( $( this ), options ); - return this; - }); - } - - // (other invocations only work on the first element in selected) - var $firstElement = $( this[0] ), - previousControl = $firstElement.data( Pagination.prototype.DATA_KEY ); - // if a pagination control was found for this element, either... - if( previousControl ){ - // invoke a function on the pagination object if passed a string (the function name) - if( jQuery.type( options ) === 'string' ){ - var fn = previousControl[ options ]; - if( jQuery.type( fn ) === 'function' ){ - return fn.apply( previousControl, nonOptionsArgs ); - } - - // if passed nothing, return the previously set control - } else { - return previousControl; - } - } - // if there is no control already set, return undefined - return undefined; - } - }); -})); diff -r 6f73d9d8de65e81d16049f4507777ca5df7dc1bf -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae client/galaxy/scripts/jq-plugins/ui/peek-column-selector.js --- a/client/galaxy/scripts/jq-plugins/ui/peek-column-selector.js +++ /dev/null @@ -1,317 +0,0 @@ -// from: https://raw.githubusercontent.com/umdjs/umd/master/jqueryPlugin.js -// Uses AMD or browser globals to create a jQuery plugin. -(function (factory) { - if (typeof define === 'function' && define.amd) { - // AMD. Register as an anonymous module. - define(['jquery'], factory); - } else { - // Browser globals - factory(jQuery); - } - -}(function ($) { - //============================================================================== - /** Column selection using the peek display as the control. - * Adds rows to the bottom of the peek with clickable areas in each cell - * to allow the user to select columns. - * Column selection can be limited to a single column or multiple. - * (Optionally) adds a left hand column of column selection prompts. - * (Optionally) allows the column headers to be clicked/renamed - * and set to some initial value. - * (Optionally) hides comment rows. - * (Optionally) allows pre-selecting and disabling certain columns for - * each row control. - * - * Construct by selecting a peek table to be used with jQuery and - * calling 'peekColumnSelector' with options. - * Options must include a 'controls' array and can include other options - * listed below. - * @example: - * $( 'pre.peek' ).peekColumnSelector({ - * columnNames : ["Chromosome", "Start", "Base", "", "", "Qual" ], - * controls : [ - * { label: 'X Column', id: 'xColumn' }, - * { label: 'Y Column', id: 'yColumn', selected: 2 }, - * { label: 'ID Column', id: 'idColumn', selected: 4, disabled: [ 1, 5 ] }, - * { label: 'Heatmap', id: 'heatmap', selected: [ 2, 4 ], disabled: [ 0, 1 ], multiselect: true, - * selectedText: 'Included', unselectedText: 'Excluded' } - * ], - * renameColumns : true, - * hideCommentRows : true, - * includePrompts : true, - * topLeftContent : 'Data sample:' - * }).on( 'peek-column-selector.change', function( ev, selection ){ - * console.info( 'new selection:', selection ); - * //{ yColumn: 2 } - * }).on( 'peek-column-selector.rename', function( ev, names ){ - * console.info( 'column names', names ); - * //[ 'Bler', 'Start', 'Base', '', '', 'Qual' ] - * }); - * - * An event is fired when column selection is changed and the event - * is passed an object in the form: { the row id : the new selection value }. - * An event is also fired when the table headers are re-named and - * is passed the new array of column names. - */ - - /** option defaults */ - var defaults = { - /** does this control allow renaming headers? */ - renameColumns : false, - /** does this control allow renaming headers? */ - columnNames : [], - /** the comment character used by the peek's datatype */ - commentChar : '#', - /** should comment rows be shown or hidden in the peek */ - hideCommentRows : false, - /** should a column of row control prompts be used */ - includePrompts : true, - /** what is the content of the top left cell (often a title) */ - topLeftContent : 'Columns:' - }, - /** class added to the pre.peek element (to allow css on just the control) */ - PEEKCONTROL_CLASS = 'peek-column-selector', - /** the string of the event fired when a control row changes */ - CHANGE_EVENT = 'peek-column-selector.change', - /** the string of the event fired when a column is renamed */ - RENAME_EVENT = 'peek-column-selector.rename', - /** class added to the control rows */ - ROW_CLASS = 'control', - /** class added to the left-hand cells that serve as row prompts */ - PROMPT_CLASS = 'control-prompt', - /** class added to selected _cells_/tds */ - SELECTED_CLASS = 'selected', - /** class added to disabled/un-clickable cells/tds */ - DISABLED_CLASS = 'disabled', - /** class added to the clickable surface within a cell to select it */ - BUTTON_CLASS = 'button', - /** class added to peek table header (th) cells to indicate they can be clicked and are renamable */ - RENAMABLE_HEADER_CLASS = 'renamable-header', - /** the data key used for each cell to store the column index ('data-...') */ - COLUMN_INDEX_DATA_KEY = 'column-index', - /** renamable header data key used to store the column name (w/o the number and dot: '1.Bler') */ - COLUMN_NAME_DATA_KEY = 'column-name'; - - //TODO: not happy with pure functional here - rows should polymorph (multi, single, etc.) - //TODO: needs clean up, move handlers to outer scope - - // ........................................................................ - /** validate the control data sent in for each row */ - function validateControl( control ){ - if( control.disabled && jQuery.type( control.disabled ) !== 'array' ){ - throw new Error( '"disabled" must be defined as an array of indeces: ' + JSON.stringify( control ) ); - } - if( control.multiselect && control.selected && jQuery.type( control.selected ) !== 'array' ){ - throw new Error( 'Mulitselect rows need an array for "selected": ' + JSON.stringify( control ) ); - } - if( !control.label || !control.id ){ - throw new Error( 'Peek controls need a label and id for each control row: ' + JSON.stringify( control ) ); - } - if( control.disabled && control.disabled.indexOf( control.selected ) !== -1 ){ - throw new Error( 'Selected column is in the list of disabled columns: ' + JSON.stringify( control ) ); - } - return control; - } - - /** build the inner control surface (i.e. button-like) */ - function buildButton( control, columnIndex ){ - return $( '<div/>' ).addClass( BUTTON_CLASS ).text( control.label ); - } - - /** build the basic (shared) cell structure */ - function buildControlCell( control, columnIndex ){ - var $td = $( '<td/>' ) - .html( buildButton( control, columnIndex ) ) - .attr( 'data-' + COLUMN_INDEX_DATA_KEY, columnIndex ); - - // disable if index in disabled array - if( control.disabled && control.disabled.indexOf( columnIndex ) !== -1 ){ - $td.addClass( DISABLED_CLASS ); - } - return $td; - } - - /** set the text of the control based on selected/un */ - function setSelectedText( $cell, control, columnIndex ){ - var $button = $cell.children( '.' + BUTTON_CLASS ); - if( $cell.hasClass( SELECTED_CLASS ) ){ - $button.html( ( control.selectedText !== undefined )?( control.selectedText ):( control.label ) ); - } else { - $button.html( ( control.unselectedText !== undefined )?( control.unselectedText ):( control.label ) ); - } - } - - /** build a cell for a row that only allows one selection */ - function buildSingleSelectCell( control, columnIndex ){ - // only one selection - selected is single index - var $cell = buildControlCell( control, columnIndex ); - if( control.selected === columnIndex ){ - $cell.addClass( SELECTED_CLASS ); - } - setSelectedText( $cell, control, columnIndex ); - - // only add the handler to non-disabled controls - if( !$cell.hasClass( DISABLED_CLASS ) ){ - $cell.click( function selectClick( ev ){ - var $cell = $( this ); - // don't re-select or fire event if already selected - if( !$cell.hasClass( SELECTED_CLASS ) ){ - // only one can be selected - remove selected on all others, add it here - var $otherSelected = $cell.parent().children( '.' + SELECTED_CLASS ).removeClass( SELECTED_CLASS ); - $otherSelected.each( function(){ - setSelectedText( $( this ), control, columnIndex ); - }); - - $cell.addClass( SELECTED_CLASS ); - setSelectedText( $cell, control, columnIndex ); - - // fire the event from the table itself, passing the id and index of selected - var eventData = {}, - key = $cell.parent().attr( 'id' ), - val = $cell.data( COLUMN_INDEX_DATA_KEY ); - eventData[ key ] = val; - $cell.parents( '.peek' ).trigger( CHANGE_EVENT, eventData ); - } - }); - } - return $cell; - } - - /** build a cell for a row that allows multiple selections */ - function buildMultiSelectCell( control, columnIndex ){ - var $cell = buildControlCell( control, columnIndex ); - // multiple selection - selected is an array - if( control.selected && control.selected.indexOf( columnIndex ) !== -1 ){ - $cell.addClass( SELECTED_CLASS ); - } - setSelectedText( $cell, control, columnIndex ); - - // only add the handler to non-disabled controls - if( !$cell.hasClass( DISABLED_CLASS ) ){ - $cell.click( function multiselectClick( ev ){ - var $cell = $( this ); - // can be more than one selected - toggle selected on this cell - $cell.toggleClass( SELECTED_CLASS ); - setSelectedText( $cell, control, columnIndex ); - var selectedColumnIndeces = $cell.parent().find( '.' + SELECTED_CLASS ).map( function( i, e ){ - return $( e ).data( COLUMN_INDEX_DATA_KEY ); - }); - // fire the event from the table itself, passing the id and index of selected - var eventData = {}, - key = $cell.parent().attr( 'id' ), - val = jQuery.makeArray( selectedColumnIndeces ); - eventData[ key ] = val; - $cell.parents( '.peek' ).trigger( CHANGE_EVENT, eventData ); - }); - } - return $cell; - } - - /** iterate over columns in peek and create a control for each */ - function buildControlCells( count, control ){ - var $cells = []; - // build a control for each column - using a build fn based on control - for( var columnIndex=0; columnIndex<count; columnIndex+=1 ){ - $cells.push( control.multiselect? buildMultiSelectCell( control, columnIndex ) - : buildSingleSelectCell( control, columnIndex ) ); - } - return $cells; - } - - /** build a row of controls for the peek */ - function buildControlRow( cellCount, control, includePrompts ){ - var $controlRow = $( '<tr/>' ).attr( 'id', control.id ).addClass( ROW_CLASS ); - if( includePrompts ){ - var $promptCell = $( '<td/>' ).addClass( PROMPT_CLASS ).text( control.label + ':' ); - $controlRow.append( $promptCell ); - } - $controlRow.append( buildControlCells( cellCount, control ) ); - return $controlRow; - } - - // ........................................................................ - /** add to the peek, using options for configuration, return the peek */ - function peekColumnSelector( options ){ - options = jQuery.extend( true, {}, defaults, options ); - - var $peek = $( this ).addClass( PEEKCONTROL_CLASS ), - $peektable = $peek.find( 'table' ), - // get the size of the tables - width and height, number of comment rows - columnCount = $peektable.find( 'th' ).size(), - rowCount = $peektable.find( 'tr' ).size(), - // get the rows containing text starting with the comment char (also make them grey) - $commentRows = $peektable.find( 'td[colspan]' ).map( function( e, i ){ - var $this = $( this ); - if( $this.text() && $this.text().match( new RegExp( '^' + options.commentChar ) ) ){ - return $( this ).css( 'color', 'grey' ).parent().get(0); - } - return null; - }); - - // should comment rows in the peek be hidden? - if( options.hideCommentRows ){ - $commentRows.hide(); - rowCount -= $commentRows.size(); - } - //console.debug( 'rowCount:', rowCount, 'columnCount:', columnCount, '$commentRows:', $commentRows ); - - // should a first column of control prompts be added? - if( options.includePrompts ){ - var $topLeft = $( '<th/>' ).addClass( 'top-left' ).text( options.topLeftContent ) - .attr( 'rowspan', rowCount ); - $peektable.find( 'tr' ).first().prepend( $topLeft ); - } - - // save either the options column name or the parsed text of each column header in html5 data attr and text - var $headers = $peektable.find( 'th:not(.top-left)' ).each( function( i, e ){ - var $this = $( this ), - // can be '1.name' or '1' - text = $this.text().replace( /^\d+\.*/, '' ), - name = options.columnNames[ i ] || text; - $this.attr( 'data-' + COLUMN_NAME_DATA_KEY, name ) - .text( ( i + 1 ) + (( name )?( '.' + name ):( '' )) ); - }); - - // allow renaming of columns when the header is clicked - if( options.renameColumns ){ - $headers.addClass( RENAMABLE_HEADER_CLASS ) - .click( function renameColumn(){ - // prompt for new name - var $this = $( this ), - index = $this.index() + ( options.includePrompts? 0: 1 ), - prevName = $this.data( COLUMN_NAME_DATA_KEY ), - newColumnName = prompt( 'New column name:', prevName ); - if( newColumnName !== null && newColumnName !== prevName ){ - // set the new text and data - $this.text( index + ( newColumnName?( '.' + newColumnName ):'' ) ) - .data( COLUMN_NAME_DATA_KEY, newColumnName ) - .attr( 'data-', COLUMN_NAME_DATA_KEY, newColumnName ); - // fire event for new column names - var columnNames = jQuery.makeArray( - $this.parent().children( 'th:not(.top-left)' ).map( function(){ - return $( this ).data( COLUMN_NAME_DATA_KEY ); - })); - $this.parents( '.peek' ).trigger( RENAME_EVENT, columnNames ); - } - }); - } - - // build a row for each control - options.controls.forEach( function( control, i ){ - validateControl( control ); - var $controlRow = buildControlRow( columnCount, control, options.includePrompts ); - $peektable.find( 'tbody' ).append( $controlRow ); - }); - return this; - } - - // ........................................................................ - // as jq plugin - jQuery.fn.extend({ - peekColumnSelector : function $peekColumnSelector( options ){ - return this.map( function(){ - return peekColumnSelector.call( this, options ); - }); - } - }); -})); diff -r 6f73d9d8de65e81d16049f4507777ca5df7dc1bf -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae client/galaxy/scripts/jq-plugins/ui/search-input.js --- a/client/galaxy/scripts/jq-plugins/ui/search-input.js +++ /dev/null @@ -1,159 +0,0 @@ -// from: https://raw.githubusercontent.com/umdjs/umd/master/jqueryPlugin.js -// Uses AMD or browser globals to create a jQuery plugin. -(function (factory) { - if (typeof define === 'function' && define.amd) { - //TODO: So...this turns out to be an all or nothing thing. If I load jQuery in the define below, it will - // (of course) wipe the old jquery *and all the plugins loaded into it*. So the define below *is still - // relying on jquery being loaded globally* in order to preserve plugins. - define([], factory); - } else { - // Browser globals - factory(jQuery); - } - -}(function () { - var _l = window._l || function( s ){ return s; }; - - /** searchInput: (jQuery plugin) - * Creates a search input, a clear button, and loading indicator - * within the selected node. - * - * When the user either presses return or enters some minimal number - * of characters, a callback is called. Pressing ESC when the input - * is focused will clear the input and call a separate callback. - */ - function searchInput( parentNode, options ){ -//TODO: consolidate with tool menu functionality, use there - var KEYCODE_ESC = 27, - KEYCODE_RETURN = 13, - $parentNode = $( parentNode ), - firstSearch = true, - defaults = { - initialVal : '', - name : 'search', - placeholder : 'search', - classes : '', - onclear : function(){}, - onfirstsearch : null, - onsearch : function( inputVal ){}, - minSearchLen : 0, - escWillClear : true, - oninit : function(){} - }; - - // .................................................................... input rendering and events - // visually clear the search, trigger an event, and call the callback - function clearSearchInput( event ){ - var $input = $( this ).parent().children( 'input' ); - //console.debug( this, 'clear', $input ); - $input.focus().val( '' ).trigger( 'clear:searchInput' ); - options.onclear(); - } - - // search for searchTerms, trigger an event, call the appropo callback (based on whether this is the first) - function search( event, searchTerms ){ - //console.debug( this, 'searching', searchTerms ); - //TODO: I don't think this is classic jq custom event form? search.searchInput? - $( this ).trigger( 'search:searchInput', searchTerms ); - if( typeof options.onfirstsearch === 'function' && firstSearch ){ - firstSearch = false; - options.onfirstsearch( searchTerms ); - } else { - options.onsearch( searchTerms ); - } - } - - // .................................................................... input rendering and events - function inputTemplate(){ - // class search-query is bootstrap 2.3 style that now lives in base.less - return [ '<input type="text" name="', options.name, '" placeholder="', options.placeholder, '" ', - 'class="search-query ', options.classes, '" ', '/>' ].join( '' ); - } - - // the search input that responds to keyboard events and displays the search value - function $input(){ - return $( inputTemplate() ) - // select all text on a focus - .focus( function( event ){ - $( this ).select(); - }) - // attach behaviors to esc, return if desired, search on some min len string - .keyup( function( event ){ - event.preventDefault(); - event.stopPropagation(); -//TODO: doesn't work - if( !$( this ).val() ){ $( this ).blur(); } - - // esc key will clear if desired - if( event.which === KEYCODE_ESC && options.escWillClear ){ - clearSearchInput.call( this, event ); - - } else { - var searchTerms = $( this ).val(); - // return key or the search string len > minSearchLen (if not 0) triggers search - if( ( event.which === KEYCODE_RETURN ) - || ( options.minSearchLen && searchTerms.length >= options.minSearchLen ) ){ - search.call( this, event, searchTerms ); - } else if( !searchTerms.length ){ - clearSearchInput.call( this, event ); - } - } - }) - .on( 'change', function( event ){ - search.call( this, event, $( this ).val() ); - }) - .val( options.initialVal ); - } - - // .................................................................... clear button rendering and events - // a button for clearing the search bar, placed on the right hand side - function $clearBtn(){ - return $([ '<span class="search-clear fa fa-times-circle" ', - 'title="', _l( 'clear search (esc)' ), '"></span>' ].join('') ) - .tooltip({ placement: 'bottom' }) - .click( function( event ){ - clearSearchInput.call( this, event ); - }); - } - - // .................................................................... loadingIndicator rendering - // a button for clearing the search bar, placed on the right hand side - function $loadingIndicator(){ - return $([ '<span class="search-loading fa fa-spinner fa-spin" ', - 'title="', _l( 'loading...' ), '"></span>' ].join('') ) - .hide().tooltip({ placement: 'bottom' }); - } - - // .................................................................... commands - // visually swap the load, clear buttons - function toggleLoadingIndicator(){ - $parentNode.find( '.search-loading' ).toggle(); - $parentNode.find( '.search-clear' ).toggle(); - } - - // .................................................................... init - // string command (not constructor) - if( jQuery.type( options ) === 'string' ){ - if( options === 'toggle-loading' ){ - toggleLoadingIndicator(); - } - return $parentNode; - } - - // initial render - if( jQuery.type( options ) === 'object' ){ - options = jQuery.extend( true, {}, defaults, options ); - } - //NOTE: prepended - return $parentNode.addClass( 'search-input' ).prepend([ $input(), $clearBtn(), $loadingIndicator() ]); - } - - // as jq plugin - jQuery.fn.extend({ - searchInput : function $searchInput( options ){ - return this.each( function(){ - return searchInput( this, options ); - }); - } - }); -})); diff -r 6f73d9d8de65e81d16049f4507777ca5df7dc1bf -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae client/galaxy/scripts/mvc/dataset/dataset-li-edit.js --- a/client/galaxy/scripts/mvc/dataset/dataset-li-edit.js +++ b/client/galaxy/scripts/mvc/dataset/dataset-li-edit.js @@ -3,7 +3,7 @@ "mvc/dataset/dataset-li", "mvc/tags", "mvc/annotations", - "jq-plugins/ui/fa-icon-button", + "ui/fa-icon-button", "mvc/base-mvc", "utils/localization" ], function( STATES, DATASET_LI, TAGS, ANNOTATIONS, faIconButton, BASE_MVC, _l ){ diff -r 6f73d9d8de65e81d16049f4507777ca5df7dc1bf -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae client/galaxy/scripts/mvc/dataset/dataset-li.js --- a/client/galaxy/scripts/mvc/dataset/dataset-li.js +++ b/client/galaxy/scripts/mvc/dataset/dataset-li.js @@ -1,7 +1,7 @@ define([ "mvc/list/list-item", "mvc/dataset/states", - "jq-plugins/ui/fa-icon-button", + "ui/fa-icon-button", "mvc/base-mvc", "utils/localization" ], function( LIST_ITEM, STATES, faIconButton, BASE_MVC, _l ){ diff -r 6f73d9d8de65e81d16049f4507777ca5df7dc1bf -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae client/galaxy/scripts/mvc/history/hdca-li-edit.js --- a/client/galaxy/scripts/mvc/history/hdca-li-edit.js +++ b/client/galaxy/scripts/mvc/history/hdca-li-edit.js @@ -1,7 +1,7 @@ define([ "mvc/dataset/states", "mvc/history/hdca-li", - "jq-plugins/ui/fa-icon-button", + "ui/fa-icon-button", "utils/localization" ], function( STATES, HDCA_LI, faIconButton, _l ){ //============================================================================== diff -r 6f73d9d8de65e81d16049f4507777ca5df7dc1bf -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae client/galaxy/scripts/mvc/history/history-panel-edit.js --- a/client/galaxy/scripts/mvc/history/history-panel-edit.js +++ b/client/galaxy/scripts/mvc/history/history-panel-edit.js @@ -7,7 +7,7 @@ "mvc/history/hdca-li-edit", "mvc/tags", "mvc/annotations", - "jq-plugins/ui/fa-icon-button", + "ui/fa-icon-button", "mvc/ui/popup-menu", "utils/localization" ], function( diff -r 6f73d9d8de65e81d16049f4507777ca5df7dc1bf -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae client/galaxy/scripts/mvc/history/history-panel.js --- a/client/galaxy/scripts/mvc/history/history-panel.js +++ b/client/galaxy/scripts/mvc/history/history-panel.js @@ -6,10 +6,10 @@ "mvc/history/hdca-li", "mvc/collection/collection-panel", "mvc/user/user-model", - "jq-plugins/ui/fa-icon-button", + "ui/fa-icon-button", "mvc/base-mvc", "utils/localization", - "jq-plugins/ui/search-input" + "ui/search-input" ], function( LIST_PANEL, HISTORY_MODEL, diff -r 6f73d9d8de65e81d16049f4507777ca5df7dc1bf -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae client/galaxy/scripts/mvc/history/multi-panel.js --- a/client/galaxy/scripts/mvc/history/multi-panel.js +++ b/client/galaxy/scripts/mvc/history/multi-panel.js @@ -3,8 +3,8 @@ "mvc/history/history-panel-edit", "mvc/base-mvc", "utils/ajax-queue", - "jq-plugins/ui/mode-button", - "jq-plugins/ui/search-input" + "ui/mode-button", + "ui/search-input" ], function( HISTORY_MODEL, HPANEL_EDIT, baseMVC, ajaxQueue ){ window.HISTORY_MODEL = HISTORY_MODEL; //============================================================================== diff -r 6f73d9d8de65e81d16049f4507777ca5df7dc1bf -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae client/galaxy/scripts/mvc/list/list-panel.js --- a/client/galaxy/scripts/mvc/list/list-panel.js +++ b/client/galaxy/scripts/mvc/list/list-panel.js @@ -1,9 +1,9 @@ define([ "mvc/list/list-item", - "jq-plugins/ui/loading-indicator", + "ui/loading-indicator", "mvc/base-mvc", "utils/localization", - "jq-plugins/ui/search-input" + "ui/search-input" ], function( LIST_ITEM, LoadingIndicator, BASE_MVC, _l ){ /* ============================================================================ TODO: diff -r 6f73d9d8de65e81d16049f4507777ca5df7dc1bf -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae client/galaxy/scripts/mvc/upload/upload-view.js --- a/client/galaxy/scripts/mvc/upload/upload-view.js +++ b/client/galaxy/scripts/mvc/upload/upload-view.js @@ -6,7 +6,6 @@ "mvc/upload/upload-ftp", "mvc/ui/ui-popover", "mvc/ui/ui-modal", - "mvc/ui", "utils/uploadbox"], function( Utils, diff -r 6f73d9d8de65e81d16049f4507777ca5df7dc1bf -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae client/galaxy/scripts/ui/fa-icon-button.js --- /dev/null +++ b/client/galaxy/scripts/ui/fa-icon-button.js @@ -0,0 +1,48 @@ +(function (root, factory) { + if (typeof define === 'function' && define.amd) { + define([], factory); + } else { + root.faIconButton = factory(); + } + +}(this, function () { +//============================================================================ + /** Returns a jQuery object containing a clickable font-awesome button. + * options: + * tooltipConfig : option map for bootstrap tool tip + * classes : array of class names (will always be classed as icon-btn) + * disabled : T/F - add the 'disabled' class? + * title : tooltip/title string + * target : optional href target + * href : optional href + * faIcon : which font awesome icon to use + * onclick : function to call when the button is clicked + */ + var faIconButton = function( options ){ + options = options || {}; + options.tooltipConfig = options.tooltipConfig || { placement: 'bottom' }; + + options.classes = [ 'icon-btn' ].concat( options.classes || [] ); + if( options.disabled ){ + options.classes.push( 'disabled' ); + } + + var html = [ + '<a class="', options.classes.join( ' ' ), '"', + (( options.title )?( ' title="' + options.title + '"' ):( '' )), + (( !options.disabled && options.target )? ( ' target="' + options.target + '"' ):( '' )), + ' href="', (( !options.disabled && options.href )?( options.href ):( 'javascript:void(0);' )), '">', + // could go with something less specific here - like 'html' + '<span class="fa ', options.faIcon, '"></span>', + '</a>' + ].join( '' ); + var $button = $( html ).tooltip( options.tooltipConfig ); + if( _.isFunction( options.onclick ) ){ + $button.click( options.onclick ); + } + return $button; + }; + +//============================================================================ + return faIconButton; +})); diff -r 6f73d9d8de65e81d16049f4507777ca5df7dc1bf -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae client/galaxy/scripts/ui/filter-control.js --- /dev/null +++ b/client/galaxy/scripts/ui/filter-control.js @@ -0,0 +1,204 @@ +// from: https://raw.githubusercontent.com/umdjs/umd/master/jqueryPlugin.js +// Uses AMD or browser globals to create a jQuery plugin. +(function (factory) { + if (typeof define === 'function' && define.amd) { + // AMD. Register as an anonymous module. + define(['jquery'], factory); + } else { + // Browser globals + factory(jQuery); + } + +}(function ($) { + //============================================================================== + /** + * Template function that produces a bootstrap dropdown to replace the + * vanilla HTML select input. Pass in an array of options and an initial selection: + * $( '.my-div' ).append( dropDownSelect( [ 'option1', 'option2' ], 'option2' ); + * + * When the user changes the selected option a 'change.dropdown-select' event will + * fire with both the jq event and the new selection text as arguments. + * + * Get the currently selected choice using: + * var userChoice = $( '.my-div .dropdown-select .dropdown-select-selected' ).text(); + * + */ + function dropDownSelect( options, selected ){ + // replacement for vanilla select element using bootstrap dropdowns instead + selected = selected || (( !_.isEmpty( options ) )?( options[0] ):( '' )); + var $select = $([ + '<div class="dropdown-select btn-group">', + '<button type="button" class="btn btn-default">', + '<span class="dropdown-select-selected">' + selected + '</span>', + '</button>', + '</div>' + ].join( '\n' )); + + // if there's only one option, do not style/create as buttons, dropdown - use simple span + // otherwise, a dropdown displaying the current selection + if( options && options.length > 1 ){ + $select.find( 'button' ) + .addClass( 'dropdown-toggle' ).attr( 'data-toggle', 'dropdown' ) + .append( ' <span class="caret"></span>' ); + $select.append([ + '<ul class="dropdown-menu" role="menu">', + _.map( options, function( option ){ + return [ + '<li><a href="javascript:void(0)">', option, '</a></li>' + ].join( '' ); + }).join( '\n' ), + '</ul>' + ].join( '\n' )); + } + + // trigger 'change.dropdown-select' when a new selection is made using the dropdown + function selectThis( event ){ + var $this = $( this ), + $select = $this.parents( '.dropdown-select' ), + newSelection = $this.text(); + $select.find( '.dropdown-select-selected' ).text( newSelection ); + $select.trigger( 'change.dropdown-select', newSelection ); + } + + $select.find( 'a' ).click( selectThis ); + return $select; + } + + //============================================================================== + /** + * Creates a three part bootstrap button group (key, op, value) meant to + * allow the user control of filters (e.g. { key: 'name', op: 'contains', value: 'my_history' }) + * + * Each field uses a dropDownSelect (from ui.js) to allow selection + * (with the 'value' field appearing as an input when set to do so). + * + * Any change or update in any of the fields will trigger a 'change.filter-control' + * event which will be passed an object containing those fields (as the example above). + * + * Pass in an array of possible filter objects to control what the user can select. + * Each filter object should have: + * key : generally the attribute name on which to filter something + * ops : an array of 1 or more filter operations (e.g. [ 'is', '<', 'contains', '!=' ]) + * values (optional) : an array of possible values for the filter (e.g. [ 'true', 'false' ]) + * @example: + * $( '.my-div' ).filterControl({ + * filters : [ + * { key: 'name', ops: [ 'is exactly', 'contains' ] } + * { key: 'deleted', ops: [ 'is' ], values: [ 'true', 'false' ] } + * ] + * }); + * // after initialization, you can prog. get the current value using: + * $( '.my-div' ).filterControl( 'val' ) + * + */ + function FilterControl( element, options ){ + return this.init( element, options ); + } + /** the data key that this object will be stored under in the DOM element */ + FilterControl.prototype.DATA_KEY = 'filter-control'; + + /** parses options, sets up instance vars, and does initial render */ + FilterControl.prototype.init = function _init( element, options ){ + options = options || { filters: [] }; + this.$element = $( element ).addClass( 'filter-control btn-group' ); + this.options = jQuery.extend( true, {}, this.defaults, options ); + + this.currFilter = this.options.filters[0]; + return this.render(); + }; + + /** render (or re-render) the controls on the element */ + FilterControl.prototype.render = function _render(){ + this.$element.empty() + .append([ this._renderKeySelect(), this._renderOpSelect(), this._renderValueInput() ]); + return this; + }; + + /** render the key dropDownSelect, bind a change event to it, and return it */ + FilterControl.prototype._renderKeySelect = function __renderKeySelect(){ + var filterControl = this; + var keys = this.options.filters.map( function( filter ){ + return filter.key; + }); + this.$keySelect = dropDownSelect( keys, this.currFilter.key ) + .addClass( 'filter-control-key' ) + .on( 'change.dropdown-select', function( event, selection ){ + filterControl.currFilter = _.findWhere( filterControl.options.filters, { key: selection }); + // when the filter/key changes, re-render the control entirely + filterControl.render()._triggerChange(); + }); + return this.$keySelect; + }; + + /** render the op dropDownSelect, bind a change event to it, and return it */ + FilterControl.prototype._renderOpSelect = function __renderOpSelect(){ + var filterControl = this, + ops = this.currFilter.ops; + //TODO: search for currOp in avail. ops: use that for selected if there; otherwise: first op + this.$opSelect = dropDownSelect( ops, ops[0] ) + .addClass( 'filter-control-op' ) + .on( 'change.dropdown-select', function( event, selection ){ + filterControl._triggerChange(); + }); + return this.$opSelect; + }; + + /** render the value control, bind a change event to it, and return it */ + FilterControl.prototype._renderValueInput = function __renderValueInput(){ + var filterControl = this; + // if a values attribute is prov. on the filter - make this a dropdown; otherwise, use an input + if( this.currFilter.values ){ + this.$valueSelect = dropDownSelect( this.currFilter.values, this.currFilter.values[0] ) + .on( 'change.dropdown-select', function( event, selection ){ + filterControl._triggerChange(); + }); + } else { + //TODO: allow setting a value type (mainly for which html5 input to use: range, number, etc.) + this.$valueSelect = $( '<input/>' ).addClass( 'form-control' ) + .on( 'change', function( event, value ){ + filterControl._triggerChange(); + }); + } + this.$valueSelect.addClass( 'filter-control-value' ); + return this.$valueSelect; + }; + + /** return the current state/setting for the filter as a three key object: key, op, value */ + FilterControl.prototype.val = function _val(){ + var key = this.$element.find( '.filter-control-key .dropdown-select-selected' ).text(), + op = this.$element.find( '.filter-control-op .dropdown-select-selected' ).text(), + // handle either a dropdown or plain input + $value = this.$element.find( '.filter-control-value' ), + value = ( $value.hasClass( 'dropdown-select' ) )?( $value.find( '.dropdown-select-selected' ).text() ) + :( $value.val() ); + return { key: key, op: op, value: value }; + }; + + // single point of change for change event + FilterControl.prototype._triggerChange = function __triggerChange(){ + this.$element.trigger( 'change.filter-control', this.val() ); + }; + + // as jq plugin + jQuery.fn.extend({ + filterControl : function $filterControl( options ){ + var nonOptionsArgs = jQuery.makeArray( arguments ).slice( 1 ); + return this.map( function(){ + var $this = $( this ), + data = $this.data( FilterControl.prototype.DATA_KEY ); + + if( jQuery.type( options ) === 'object' ){ + data = new FilterControl( $this, options ); + $this.data( FilterControl.prototype.DATA_KEY, data ); + } + if( data && jQuery.type( options ) === 'string' ){ + var fn = data[ options ]; + if( jQuery.type( fn ) === 'function' ){ + return fn.apply( data, nonOptionsArgs ); + } + } + return this; + }); + } + }); +})); diff -r 6f73d9d8de65e81d16049f4507777ca5df7dc1bf -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae client/galaxy/scripts/ui/loading-indicator.js --- /dev/null +++ b/client/galaxy/scripts/ui/loading-indicator.js @@ -0,0 +1,98 @@ +(function (root, factory) { + if (typeof define === 'function' && define.amd) { + // AMD. Register as an anonymous module. + define([], factory); + } else { + // Browser globals + root.LoadingIndicator = factory(); + } + +//============================================================================ +}(this, function () { + //TODO: too specific to history panel + function LoadingIndicator( $where, options ){ + + var self = this; + // defaults + options = jQuery.extend({ + cover : false + }, options || {} ); + + function render(){ + var html = [ + '<div class="loading-indicator">', + '<div class="loading-indicator-text">', + '<span class="fa fa-spinner fa-spin fa-lg"></span>', + '<span class="loading-indicator-message">loading...</span>', + '</div>', + '</div>' + ].join( '\n' ); + + var $indicator = $( html ).hide().css( options.css || { + position : 'fixed' + }), + $text = $indicator.children( '.loading-indicator-text' ); + + if( options.cover ){ + $indicator.css({ + 'z-index' : 2, + top : $where.css( 'top' ), + bottom : $where.css( 'bottom' ), + left : $where.css( 'left' ), + right : $where.css( 'right' ), + opacity : 0.5, + 'background-color': 'white', + 'text-align': 'center' + }); + $text = $indicator.children( '.loading-indicator-text' ).css({ + 'margin-top' : '20px' + }); + + } else { + $text = $indicator.children( '.loading-indicator-text' ).css({ + margin : '12px 0px 0px 10px', + opacity : '0.85', + color : 'grey' + }); + $text.children( '.loading-indicator-message' ).css({ + margin : '0px 8px 0px 0px', + 'font-style' : 'italic' + }); + } + return $indicator; + } + + self.show = function( msg, speed, callback ){ + msg = msg || 'loading...'; + speed = speed || 'fast'; + // remove previous + $where.parent().find( '.loading-indicator' ).remove(); + // since position is fixed - we insert as sibling + self.$indicator = render().insertBefore( $where ); + self.message( msg ); + self.$indicator.fadeIn( speed, callback ); + return self; + }; + + self.message = function( msg ){ + self.$indicator.find( 'i' ).text( msg ); + }; + + self.hide = function( speed, callback ){ + speed = speed || 'fast'; + if( self.$indicator && self.$indicator.size() ){ + self.$indicator.fadeOut( speed, function(){ + self.$indicator.remove(); + if( callback ){ callback(); } + }); + } else { + if( callback ){ callback(); } + } + return self; + }; + return self; + } + +//============================================================================ + return LoadingIndicator; +})); diff -r 6f73d9d8de65e81d16049f4507777ca5df7dc1bf -r 336a1e96bf5196955ec9f1b45d0446c42d4bc9ae client/galaxy/scripts/ui/mode-button.js --- /dev/null +++ b/client/galaxy/scripts/ui/mode-button.js @@ -0,0 +1,191 @@ +// from: https://raw.githubusercontent.com/umdjs/umd/master/jqueryPlugin.js +// Uses AMD or browser globals to create a jQuery plugin. +(function (factory) { + if (typeof define === 'function' && define.amd) { + //TODO: So...this turns out to be an all or nothing thing. If I load jQuery in the define below, it will + // (of course) wipe the old jquery *and all the plugins loaded into it*. So the define below *is still + // relying on jquery being loaded globally* in order to preserve plugins. + define([], factory); + } else { + // Browser globals + factory(jQuery); + } + +}(function () { + + /** Multi 'mode' button (or any element really) that changes the html + * contents of itself when clicked. Pass in an ordered list of + * objects with 'html' and (optional) onclick functions. + * + * When clicked in a particular node, the onclick function will + * be called (with the element as this) and the element will + * switch to the next mode, replacing its html content with + * that mode's html. + * + * If there is no next mode, the element will switch back to + * the first mode. + * @example: + * $( '.myElement' ).modeButton({ + * modes : [ + * { + * mode: 'bler', + * html: '<h5>Bler</h5>', + * onclick : function(){ + * $( 'body' ).css( 'background-color', 'red' ); + * } + * }, + * { + * mode: 'bloo', + * html: '<h4>Bloo</h4>', + * onclick : function(){ + * $( 'body' ).css( 'background-color', 'blue' ); + * } + * }, + * { + * mode: 'blah', + * html: '<h3>Blah</h3>', + * onclick : function(){ + * $( 'body' ).css( 'background-color', 'grey' ); + * } + * }, + * ] + * }); + * $( '.myElement' ).modeButton( 'callModeFn', 'bler' ); + */ + /** constructor */ + function ModeButton( element, options ){ + this.currModeIndex = 0; + return this._init( element, options ); + } + + /** html5 data key to store this object inside an element */ + ModeButton.prototype.DATA_KEY = 'mode-button'; + /** default options */ + ModeButton.prototype.defaults = { + switchModesOnClick : true + }; + + // ---- private interface + /** set up options, intial mode, and the click handler */ + ModeButton.prototype._init = function _init( element, options ){ + //console.debug( 'ModeButton._init:', element, options ); + options = options || {}; + this.$element = $( element ); + this.options = $.extend( true, {}, this.defaults, options ); + if( !options.modes ){ + throw new Error( 'ModeButton requires a "modes" array' ); + } + + var modeButton = this; + this.$element.click( function _ModeButtonClick( event ){ + // call the curr mode fn + modeButton.callModeFn(); + // inc the curr mode index + if( modeButton.options.switchModesOnClick ){ modeButton._incModeIndex(); } + // set the element html + $( this ).html( modeButton.options.modes[ modeButton.currModeIndex ].html ); + }); + return this.reset(); + }; + /** increment the mode index to the next in the array, looping back to zero if at the last */ + ModeButton.prototype._incModeIndex = function _incModeIndex(){ + this.currModeIndex += 1; + if( this.currModeIndex >= this.options.modes.length ){ + this.currModeIndex = 0; + } + return this; + }; + /** get the mode index in the modes array for the given key (mode name) */ + ModeButton.prototype._getModeIndex = function _getModeIndex( modeKey ){ + for( var i=0; i<this.options.modes.length; i+=1 ){ + if( this.options.modes[ i ].mode === modeKey ){ return i; } + } + throw new Error( 'mode not found: ' + modeKey ); + }; + /** set the current mode to the one with the given index and set button html */ + ModeButton.prototype._setModeByIndex = function _setModeByIndex( index ){ + var newMode = this.options.modes[ index ]; + if( !newMode ){ + throw new Error( 'mode index not found: ' + index ); + } + this.currModeIndex = index; + if( newMode.html ){ + this.$element.html( newMode.html ); + } + return this; + }; + + // ---- public interface + /** get the current mode object (not just the mode name) */ + ModeButton.prototype.currentMode = function currentMode(){ + return this.options.modes[ this.currModeIndex ]; + }; + /** return the mode key of the current mode */ + ModeButton.prototype.current = function current(){ + // sugar for returning mode name + return this.currentMode().mode; + }; + /** get the mode with the given modeKey or the current mode if modeKey is undefined */ + ModeButton.prototype.getMode = function getMode( modeKey ){ + if( !modeKey ){ return this.currentMode(); } + return this.options.modes[( this._getModeIndex( modeKey ) )]; + }; + /** T/F if the button has the given mode */ + ModeButton.prototype.hasMode = function hasMode( modeKey ){ + try { + return !!this.getMode( modeKey ); + } catch( err ){} + return false; + }; + /** set the current mode to the mode with the given name */ + ModeButton.prototype.setMode = function setMode( modeKey ){ + return this._setModeByIndex( this._getModeIndex( modeKey ) ); + }; + /** reset to the initial mode */ + ModeButton.prototype.reset = function reset(){ + this.currModeIndex = 0; + if( this.options.initialMode ){ + this.currModeIndex = this._getModeIndex( this.options.initialMode ); + } + return this._setModeByIndex( this.currModeIndex ); + }; + /** manually call the click handler of the given mode */ + ModeButton.prototype.callModeFn = function callModeFn( modeKey ){ + var modeFn = this.getMode( modeKey ).onclick; + if( modeFn && $.type( modeFn === 'function' ) ){ + // call with the element as context (std jquery pattern) + return modeFn.call( this.$element.get(0) ); + } + return undefined; + }; + + // as jq plugin + $.fn.modeButton = function $modeButton( options ){ + if( !this.size() ){ return this; } + + //TODO: does map still work with jq multi selection (i.e. $( '.class-for-many-btns' ).modeButton)? + if( $.type( options ) === 'object' ){ + return this.map( function(){ + var $this = $( this ); + $this.data( 'mode-button', new ModeButton( $this, options ) ); + return this; + }); + } + + var $first = $( this[0] ), + button = $first.data( 'mode-button' ); + + if( !button ){ + throw new Error( 'modeButton needs an options object or string name of a function' ); + } + + if( button && $.type( options ) === 'string' ){ + var fnName = options; + if( button && $.type( button[ fnName ] ) === 'function' ){ + return button[ fnName ].apply( button, $.makeArray( arguments ).slice( 1 ) ); + } + } + return button; + }; + +})); This diff is so big that we needed to truncate the remainder. Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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