1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/888cd02028b3/ Changeset: 888cd02028b3 User: jmchilton Date: 2014-05-02 18:21:10 Summary: Small fixes for LWR. Things added/modified for parameter rewriting at tool evaluatino time that regressed when implementing message queue stuff I guess. Affected #: 2 files diff -r 42b9fb317fdd9248154216530883603110905301 -r 888cd02028b37f93beba8b175fec8c85a912ac9f lib/galaxy/jobs/runners/lwr_client/setup_handler.py --- a/lib/galaxy/jobs/runners/lwr_client/setup_handler.py +++ b/lib/galaxy/jobs/runners/lwr_client/setup_handler.py @@ -32,7 +32,7 @@ def __init__(self, client, destination_args): self.client = client system_properties = self.__build_system_properties(destination_args) - system_properties["sep"] = client.job_directory.separator + system_properties["separator"] = client.job_directory.separator self.system_properties = system_properties self.jobs_directory = destination_args["jobs_directory"] diff -r 42b9fb317fdd9248154216530883603110905301 -r 888cd02028b37f93beba8b175fec8c85a912ac9f lib/galaxy/tools/evaluation.py --- a/lib/galaxy/tools/evaluation.py +++ b/lib/galaxy/tools/evaluation.py @@ -251,7 +251,10 @@ if real_path in output_dataset_paths: dataset_path = output_dataset_paths[ real_path ] param_dict[name] = DatasetFilenameWrapper( hda, dataset_path=dataset_path ) - open( dataset_path.false_path, 'w' ).close() + try: + open( dataset_path.false_path, 'w' ).close() + except EnvironmentError: + pass # May well not exist - e.g. LWR. else: param_dict[name] = DatasetFilenameWrapper( hda ) # Provide access to a path to store additional files Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.