ProgrammingError: (ProgrammingError) You must not use 8-bit
bytestrings unless you use a text_factory that can interpret 8-bit
bytestrings (like text_factory = str). It is highly recommended that
you instead just switch your application to Unicode strings. u'UPDATE
job SET update_time=?, state=?, stdout=?, stderr=? WHERE job.id = ?'
['2013-01-14 07:17:20.417990', 'error', '',
'\n\n\x1b[33mS\x1b[0megmented \x1b[33mHAP\x1b[0mlotype
\x1b[33mE\x1b[0mstimation & \x1b[33mI\x1b[0mmputation
\x1b[33mT\x1b[0mool\
That is just a sample of the stderr from the galaxy stack trace. I
think that shapeit is using 8 bit character codes in the stdout and
galaxy is failing on adding to the database. Has anyone experienced
this problem and could help me.
Cheers James