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August 2013
- 116 participants
- 210 discussions
Hi,
I am having trouble setting up a FTP connection with the recently released
version of Galaxy Cloudman (ami-118bfc78).
I have instantiated the new version of Galaxy Cloudman with
CloudLaunch<http://usegalaxy.org/cloudlaunch> and
also through the AWS EC2 wizard (using the same security group settings as
the previous versions) and neither instance will connect to my FTP
connection.
Has anyone else had this problem? Does anyone know what is preventing the
FTP connection?
Any help would be greatly appreciated.
Cheers,
Mo Heydarian
4
4
Hello,
I found a couple of issues in using the latest version of Cloudman
(revision:10201:ebe87051fadf").
The "Extract Genomic DNA" tool returns an error:
"No sequences are available for 'mm9', request them by reporting this
error."
Upon trying to report the error in Galaxy (on the page that comes up when
you click the bug icon) I get the error:
"Mail is not configured for this galaxy instance"
Any help on fixing the "Extract Genomic DNA" tool would be great. Thanks.
Cheers,
Mo Heydarian
3
2
*Last night, we released an update to Galaxy CloudMan.* CloudMan offers an
easy way to get a personal and completely functional instance of Galaxy in
the cloud in just a few minutes, without any manual configuration.
*IMPORTANT - please read*
Any new cluster will automatically start using this version of CloudMan.
Existing clusters will be given an option to do an automatic update once
the main interface page is refreshed. Note that this upgrade is a major
version upgrade and thus the migration is rather complicated. The migration
process has been automated but will take a little while to complete. If you
have made customizations to your cluster in terms of adding file systems,
upgrading the database, or similar, we do not recommend you perform the
upgrade. Note that this upgrade comes with (and requires) a new AMI
(ami-118bfc78), which will be automatically used if starting an instance
via CloudLaunch <http://usegalaxy.org/cloudlaunch>.
*This update brings a large number of updates and new features, the most
prominent ones being:*
- Unification of *galaxyTools* and *galaxyData* file systems into a single *
galaxy* filesystem. This change makes it possible to utilize the Galaxy
Tool Shed when installing tools into Galaxy.
- Added initial support for Hadoop-type workloads
- Added initial support for cluster federation via HTCondor
- Added a new file system service for instance's transient storage,
allowing it to be used across the cluster over NFS
- Added a service for Galaxy Reports webapp
- Added optional Loggly (loggly.com) based off-site logging support
- Added tags to all resources utilized by CloudMan
For more details on the new features, see the the
CHANGELOG<https://bitbucket.org/galaxy/cloudman/src/tip/CHANGELOG.md?at=default>and
for even more details see, all of 291
commit messages<https://bitbucket.org/galaxy/cloudman/commits/all?search=35baec1%3A8bbae3f>
from
7 contributors.
Enjoy and please let us know what you think,
Enis
P.S.
We also now have a logo for CloudMan
[image: Inline image 2]
3
5
RuntimeError: maximum recursion depth exceeded while calling a Python object
by Christian Dreischer 27 Aug '13
by Christian Dreischer 27 Aug '13
27 Aug '13
Hi,
I tried to visualize a BAM file with Trackster. After adding a custom genome build, I always get an error message when Galaxy needs to access http://127.0.0.1:8081/user/dbkeys:
Internal Server Error
Galaxy was unable to sucessfully complete your request
URL: http://127.0.0.1:8081/user/dbkeys
Module galaxy.web.framework.middleware.error:149 in __call__
>> app_iter = self.application(environ, sr_checker)
Module paste.recursive:84 in __call__
>> return self.application(environ, start_response)
Module paste.httpexceptions:633 in __call__
>> return self.application(environ, start_response)
Module galaxy.web.framework.base:132 in __call__
>> return self.handle_request( environ, start_response )
Module galaxy.web.framework.base:190 in handle_request
>> body = method( trans, **kwargs )
Module galaxy.web.framework:98 in decorator
>> return func( self, trans, *args, **kwargs )
Module galaxy.webapps.galaxy.controllers.user:1334 in dbkeys
>> len_dataset = fasta_dataset.get_converted_dataset( trans, "len" )
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:216 in execute
>> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name
Module galaxy.model:1340 in get_converted_dataset
>> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0]
Module galaxy.datatypes.data:488 in convert_dataset
>> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1]
Module galaxy.tools:2275 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions:204 in execute
>> db_dataset = trans.db_dataset_for( input_dbkey )
Module galaxy.web.framework:1082 in db_dataset_for
>> for ds in datasets:
Module sqlalchemy.orm.query:2227 in __iter__
>> return self._execute_and_instances(context)
Module sqlalchemy.orm.query:2242 in _execute_and_instances
>> result = conn.execute(querycontext.statement, self._params)
Module sqlalchemy.engine.base:1449 in execute
>> params)
Module sqlalchemy.engine.base:1576 in _execute_clauseelement
>> inline=len(distilled_params) > 1)
Module sqlalchemy.sql.expression:1778 in compile
Module sqlalchemy.sql.expression:1784 in _compiler
Module sqlalchemy.sql.compiler:276 in __init__
Module sqlalchemy.engine.base:705 in __init__
>> self.string = self.process(self.statement)
Module sqlalchemy.engine.base:724 in process
>> return obj._compiler_dispatch(self, **kwargs)
Module sqlalchemy.sql.visitors:72 in _compiler_dispatch
Module sqlalchemy.sql.compiler:997 in visit_select
Module sqlalchemy.sql.visitors:72 in _compiler_dispatch
Module sqlalchemy.sql.compiler:498 in visit_clauselist
Module sqlalchemy.sql.compiler:496 in <genexpr>
Module sqlalchemy.sql.compiler:498 in <genexpr>
Module sqlalchemy.sql.visitors:72 in _compiler_dispatch
Module sqlalchemy.sql.compiler:618 in visit_binary
Module sqlalchemy.sql.compiler:663 in _operator_dispatch
Module sqlalchemy.sql.compiler:617 in <lambda>
Module sqlalchemy.sql.visitors:72 in _compiler_dispatch
Module sqlalchemy.sql.compiler:679 in visit_bindparam
Module sqlalchemy.sql.compiler:743 in _truncate_bindparam
Module sqlalchemy.sql.compiler:754 in _truncated_identifier
Module sqlalchemy.sql.expression:1325 in apply_map
Module sqlalchemy.util._collections:572 in __missing__
Module sqlalchemy.sql.compiler:773 in _process_anon
RuntimeError: maximum recursion depth exceeded while calling a Python object
Do you have an idea what causes this error?
Is there a way to purge the dbkeys database?
Thank you
Christian
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3
Hei,
Is it possible to use a <select multiple="True"> for a conditional? I'm trying to use it for checkboxes which by default have to have multiple set. But as soon as I put the multiple-tag in I get an 'no case matched' exception (see example below).
Any suggestions?
Tim
Example (working)
<conditional name="c1">
<param type="select" name="dbt" label="Db tools">
<option value="blast">Blast</option>
<option value="fasta">Fasta</option>
</param>
<when value="blast">
...
</when>
</conditional>
Example (exception)
<conditional name="c1">
<param type="select" name="dbt" label="Db tools" multiple="True">
<option value="blast">Blast</option>
<option value="fasta">Fasta</option>
</param>
<when value="blast">
...
</when>
</conditional>
=> Exception: ('No class matched value:' , 'c1' , None)
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Hi Greg,
I tried to extend my old list [1] but I'm not allowed to edit it. Maybe
you can add the following items to it.
This time I collected a few items that are relevant for the Galaxy site
of the Tool Shed ( When the user is installing via webinterface )
- offer an upgrade option, I think normally you are interested in new
versions. At least an information about a new version should be
displayed during the update. Or next to the revision number (e.g two new
versions available)
- distinguish more between update and upgrade
- group different revisions of the same repository together
- indicate if a revision is the latest revision available
- a own category for workflows? Or the ability to tag a repository as
workflow?
- group the installed tools in categories
Overall it looks really nice currently and I'm somehow enjoying
installing and testing tools :)
Thanks,
Bjoern
[1]
https://trello.com/c/CIdMDeCd/988-toolshed-miscellaneous-issues-reported-by…
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Hi, Thomas.
There are no resources available to support that now 3 year old rgenetics
code so I'm sad but not surprised to hear of this new problem.
The grant ended long ago and I no longer work with SNP so have no excuse to
keep fixing or working on it.
Is someone using this code willing to take it over, fix these kinds of bugs
and add automated installation to bring it up to speed ? I'll help all I
can but without a volunteer, the code should be considered deprecated and
will soon disappear from the distribution.
On Tue, Aug 27, 2013 at 2:14 AM, Bjoern Gruening
<bjoern.gruening(a)gmail.com>wrote:
> Hi Thomas,
>
> I think you are running a to new version of gplot
>
> http://blog.rstudio.org/2012/09/07/ggplot2-0-9-2/
>
> opts is now deprecated and likely causes that error. Can you downgrade
> the gplot version?
> We are working on a R dependencies mechanism but we are not done yet,
> sorry.
>
> Hope that helps,
> Bjoern
>
> > Hey guys,
> >
> >
> >
> > we are running a local galaxy instance (10200:fd4113962c32)with R
> > version 3.0.1 and want to use Manhattan/qq, but we are missing the
> > pval manhatan.pdf, only pval qqplot.pdf is generated and we are
> > getting the following error:
> >
> >
> >
> > Nonzero exit code = 1
> >
> > [1] "### 11008 values read
> > from /opt/galaxy/galaxy-dist/database/files/002/dataset_2408.dat read
> > - now running plots"
> >
> >
> >
> > 'opts' is deprecated. Use 'theme' instead. (Deprecated; last used in
> > version 0.9.1)
> >
> >
> >
> > Setting the plot title with opts(title="...") is deprecated.
> >
> >
> >
> > Use labs(title="...") or ggtitle("...") instead. (Deprecated; last
> > used in version 0.9.1)
> >
> >
> >
> > Scale for 'x' is already present. Adding another scale for 'x', which
> > will replace the existing scale.
> >
> >
> >
> > Scale for 'y' is already present. Adding another scale for 'y', which
> > will replace the existing scale.
> >
> >
> >
> > [1] "## qqplot on pval done"
> >
> >
> >
> > [1] "## manhattan on pval starting 1 2 3"
> >
> >
> >
> > Error in structure(list(call = match.call(), aesthetics =
> > aesthetics, :
> >
> >
> >
> > argument "values" is missing, with no default
> >
> >
> >
> > Calls: rgqqMan ... scale_colour_manual -> manual_scale ->
> > discrete_scale -> structure
> >
> >
> >
> > Execution halted
> >
> >
> >
> >
> >
> > At the galaxy-main ist working without any problems using the same
> > input file.
> >
> > All the necessary packages should be installed.
> >
> >
> >
> > Any ideas? Thanks for your help.
> >
> >
> >
> > Thomas
> >
> >
> > ___________________________________________________________
> > Please keep all replies on the list by using "reply all"
> > in your mail client. To manage your subscriptions to this
> > and other Galaxy lists, please use the interface at:
> > http://lists.bx.psu.edu/
> >
> > To search Galaxy mailing lists use the unified search at:
> > http://galaxyproject.org/search/mailinglists/
>
>
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client. To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
> http://lists.bx.psu.edu/
>
> To search Galaxy mailing lists use the unified search at:
> http://galaxyproject.org/search/mailinglists/
>
--
Ross Lazarus MBBS MPH;
Head, Medical Bioinformatics, BakerIDI; Tel: +61 385321444
http://scholar.google.com/citations?hl=en&user=UCUuEM4AAAAJ
2
1
I am trying to get repository updates for the ncbi_blast_plus tool which is making following request to the toolshed<http://toolshed.g2.bx.psu.edu/repository/check_for_updates?galaxy_url=http:…> site:
http://toolshed.g2.bx.psu.edu/repository/check_for_updates?galaxy_url=http:…
This request is coming back with following response with latest_changeset_revision same as changeset_revision.
http://localhost:5000/admin_toolshed/update_to_changeset_revision?tool_shed…
This results in following message in the browser: "The installed repository named 'ncbi_blast_plus' is current, there are no updates available.".
The latest ncbi_blast_plus changeset revision in the toolshed is "9dabbfd73c8a", so I am not sure why above update request is coming back with d375502056f1 revision.
Any clues on what might be wrong here? Appreciate any further debugging steps.
--
Thanks,
Shantanu
2
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Hello,
Does Galaxy provide a post-login hook that could be used to trigger an
operating system level action upon successful login ?
Here is the scenario and use-case where that would come in handy:
* Local instance of Galaxy (Nov 2012 release) on a Linux server with a
PostgreSQL DB
* Upload via FTP feature is enabled
* Users are authenticated via LDAP and nginx
* Users should be able to securely upload files (to their sub-directory
within the configured FTP upload directory)
The current method being employed to fulfill this use-case is through a
modification to Š/galaxy-dist/lib/galaxy/web/framework/__init__.py file
that calls a a shell script which creates an OS-level user and associated
FTP upload directory. Files are uploaded by users via sFTP (SSHD
configured to restrict Galaxy users to a chroot'ed directory).
Options considered:
* Shell/Python script that periodically queries the "galaxy_user" table
and creates an OS-level user and FTP upload directory (not yet tried;
introduces delay between user creation and FTP capability unless frequency
of polling is high)
* ProFTPD with sFTP and LDAP modules (increased administrative overhead
compared to using built-in SSHD; wasn't able to get auto directory
creation to work due to TBD cause)
* PostgreSQL listen-notify to call a sFTP user creation script when an
insert occurs in the "galaxy_user" table (not yet tried)
Thank you.
--
Senior Systems Administrator
Iowa Institute for Human Genetics
ITS Research Services, The University of Iowa
2
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Hi,
if I try to install a repository via API I get the following error:
Traceback (most recent call last):
File
"/home/gruening/projects/code/galaxy-central/lib/galaxy/web/framework/__init__.py", line 189, in decorator
rval = func( self, trans, *args, **kwargs)
File
"/home/gruening/projects/code/galaxy-central/lib/galaxy/webapps/galaxy/api/tool_shed_repositories.py", line 265, in install_repository_revision
tool_shed_repository_dict =
tool_shed_repository.as_dict( value_mapper=default_tool_shed_repository_value_mapper( trans, tool_shed_repository ) )
File
"/home/gruening/projects/code/galaxy-central/lib/galaxy/model/__init__.py", line 3350, in as_dict
return self.dictify( view='element', value_mapper=value_mapper )
File
"/home/gruening/projects/code/galaxy-central/lib/galaxy/model/__init__.py", line 3445, in dictify
raise Exception( 'Unknown API view: %s' % view )
Exception: Unknown API view: element
Command line: python ./scripts/api/install_tool_shed_repositories.py
--api f1326e8588535c628f03a0df517e2247 -l http://localhost:8080 --url
http://toolshed.g2.bx.psu.edu/ -o devteam -r 4676e145a44e --name
add_value
Cheers,
Bjoern
3
3