Dear all, SUSE SLE 11 SP 1, with PBS Pro 12.1 client delivers
galaxy.jobs.runners ERROR 2014-04-02 18:28:43,740 (249) Unhandled
exception calling queue_job
Traceback (most recent call last):
File "/opt/ngs/bin/galaxy-dist/lib/galaxy/jobs/runners/__init__.py",
line 62, in run_next
method(arg)
File "/opt/ngs/bin/galaxy-dist/lib/galaxy/jobs/runners/drmaa.py", line
151, in queue_job
external_job_id = self.ds.runJob(jt)
File
"/opt/ngs/bin/galaxy-dist/eggs/drmaa-0.6-py2.6.egg/drmaa/__init__.py",
line 331, in runJob
_h.c(_w.drmaa_run_job, jid, _ct.sizeof(jid), jobTemplate)
File
"/opt/ngs/bin/galaxy-dist/eggs/drmaa-0.6-py2.6.egg/drmaa/helpers.py", line
213, in c
return f(*(args + (error_buffer, sizeof(error_buffer))))
File
"/opt/ngs/bin/galaxy-dist/eggs/drmaa-0.6-py2.6.egg/drmaa/errors.py", line
90, in error_check
raise _ERRORS[code-1]("code %s: %s" % (code, error_buffer.value))
InvalidAttributeValueException: code 14: Illegal attribute or resource
value: Illegal attribute or resource value
If I do
qsub -q NGSq
/opt/ngs/bin/galaxy-dist/database/job_working_directory/000/249/galaxy_249.sh
however the qsub returns
12345.myserver
and the corresponding
qstat | grep -i galaxy
12345.myserver galaxy_249.sh galaxy 00:00:00 E NGSq
Is the above error message perhaps related with
a) PBS 12.1
b) drmaa-0.7-py2.6.egg
I am trying to compile pbs-drmaa-1.0.17 but there are problems ...
any advice ?
any alternative ?
Thanks
luca