Re: [galaxy-dev] an uploading problem
by Martin Čech
Hello Dana,
your steps look alright, the upload should not be a problem.
However the Galaxy Project does not have control over Cistrome Galaxy
server to investigate further. Please use their Google Group to ask them
the question directly: https://groups.google.com/forum/#!forum/cistrome
thank you
Martin Cech
Galaxy Team
On Mon, Apr 28, 2014 at 4:33 PM, Dana Avrahami-Tzfati <
danaav(a)mail.med.upenn.edu> wrote:
> Hi Martin,
> Thanks for replying,
>
> I'm using the cistrome.org server. I'm choosing the "upload file from
> your computer" option from the cistrome toolbox, than I browse my computer
> and choose it. the file is about 317MB. I also check the "convert spaces to
> tabs" box, although I'm not sure it is necessary.
>
> Is there a limit to the amount of data you could upload under your
> account?,I'm using 1.8GB right now
>
> Thank you for your help!
> Dana
>
> ----- Original Message -----
> From: "Martin Čech" <marten(a)bx.psu.edu>
> To: "Dana Avrahami-Tzfati" <danaav(a)mail.med.upenn.edu>
> Cc: "Galaxy Dev" <galaxy-dev(a)bx.psu.edu>
> Sent: Monday, April 28, 2014 11:16:11 PM
> Subject: Re: [galaxy-dev] an uploading problem
>
> Hello Dana,
>
> how big is the file and how exactly are you trying to upload it? (please
> describe your steps)
>
> Are you using usegalaxy.org server?
>
> Thank you
>
> Martin
> Galaxy Team
>
>
> On Mon, Apr 28, 2014 at 7:10 AM, Dana Avrahami-Tzfati <
> danaav(a)mail.med.upenn.edu> wrote:
>
> > HI,
> > I've been trying to upload a bigwig file for at least 2 days now, but it
> > doesn't upload (no error message though).
> >
> > What to do? Would it help to delete some other heavy files?
> >
> > Thanks
> >
> > Dana
> >
> > --
> > Dana Avrahami-Tzfati, Ph.D.
> > Postdoctoral Fellow
> > Kaestner Lab
> > Dept. of Genetics
> > Institute of Diabetes, Obesity & Metabolism
> > University of Pennsylvania School of Medicine
> > Philadelphia
> >
> > Phone: 484-343-7598
> > Fax: 215-573-2326
> > email: danaav(a)mail.med.upenn.edu
> > ___________________________________________________________
> > Please keep all replies on the list by using "reply all"
> > in your mail client. To manage your subscriptions to this
> > and other Galaxy lists, please use the interface at:
> > http://lists.bx.psu.edu/
> >
> > To search Galaxy mailing lists use the unified search at:
> > http://galaxyproject.org/search/mailinglists/
> >
>
8 years, 3 months
Error with "get data" function
by DELRIEU Noemie
Hello,
I contact you because I need some help with my galaxy account. I can't use function"get data" for 3 days.
This number error appears :
GURU MEDITATION: #18e5fee395824913a0f27ff2063a0ead
The adress mail noemie.delrieu(a)gustaveroussy.fr is used for log in on server.
Thank you.
Best regards,
Noémie Delrieu
8 years, 3 months
an uploading problem
by Dana Avrahami-Tzfati
HI,
I've been trying to upload a bigwig file for at least 2 days now, but it doesn't upload (no error message though).
What to do? Would it help to delete some other heavy files?
Thanks
Dana
--
Dana Avrahami-Tzfati, Ph.D.
Postdoctoral Fellow
Kaestner Lab
Dept. of Genetics
Institute of Diabetes, Obesity & Metabolism
University of Pennsylvania School of Medicine
Philadelphia
Phone: 484-343-7598
Fax: 215-573-2326
email: danaav(a)mail.med.upenn.edu
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#
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Have a nice day,
--
Olivia Doppelt-Azeroual, PhD
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The by-product of above test is that I need to delete the user I created for test. I searched the dev mail list. The most recent one concerning this is the one sent by Nate in Nov 2011. I just could not find the py file he mentioned, probably that email is too old. I have done a grep search for "operations.append" and "item.deleted" and found two files requests_admin.py and requests.py under lib/galaxy/webapps/galaxy/controllers/. But they are not commented which means that I cannot uncomment them to make "delete user" function available in the UI as Nate suggested. Any guidance?
Best regards!
Jun
8 years, 3 months
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I tried to edit the CloudMap EMS workflow based on my own data. But I failed to make a connection between "Select Variants" and "SnpEff". In fact, I failed to reconstruct the connection between them even when I removed the original one by clicking "x" when moved cursor on the line. The arrow on left of SnpEff does not become green when I drugged the line from output_vcf(vcf) to it after I moved the original one. Could you tell me why does this happen and how should I figure this out?
[cid:d1b6886a-ce80-e25c-2ede-e7afbe43263c]
Thanks a lot!
Best
Xiaofei
8 years, 3 months
