November 2018 - galaxy-dev - lists.galaxyproject.org

Search box in tools menu / uncomplete wrappers list
by Sarah Maman 12 Nov '18

12 Nov '18

Hello, When I'm searching a keyword in the « search » box in left « tools » menu, results are sometimes false because the wrappers' list generated by the query thanks to a keyword is not full, some tools are missing. In fact, some wrappers are not listed even if the keyword is in the tool name and/or the tool description. Could you please help us to understand why ? Thanks, Sarah Maman _____________________________ Sarah Maman Bioinformatique/Bioinformatics INRA | SIGENAE | GenPhySE Centre Inra Occitanie-Toulouse Tél. : +33(0)5.61.28.57.08 _____________________________ Chemin de Borde Rouge CS 52627 31326 Castanet Tolosan cedex www.toulouse.inra.fr<http://www.toulouse.inra.fr/> Suivez-nous sur Twitter !

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November 2018 Galactic News: Platforms Directory; new events, pubs, blog posts, servers, tools and releases!
by Mo Heydarian 01 Nov '18

01 Nov '18

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galaxy kickstart failed to install tools
by Rui Wang 01 Nov '18

01 Nov '18

Hi Folks, I tried to install some tools into the galaxy kickstart, and had the following issues: 1. Tons of warnings were generated: [WARNING]: sftp transfer mechanism failed on [localhost]. Use ANSIBLE_DEBUG=1 to see detailed information 2. I wasn't able to install the data manager or tools. Error are like: "stderr": "(1/3) Installing repository tophat2 from devteam to section \"ngs-rna-tools\" at revision 5c5517d2a9e9 (TRT: 0:00:01.238735)\r\n\t* Error installing a repository (after 0:00:00.007585 seconds)! Name: tophat2,owner: devteam, revision: 5c5517d2a9e9, error: {\"err_msg\": \"You are not authorized to request the latest installable revision for a repository in this Galaxy instance.\", \"err_code\": 403006} I tried to use different revision number, but it's the same error. I also tried to use the tool list file that comes with kickstart, it's the same. Not sure if anyone saw this before. Please give me a hand? Thanks, Rui

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