December 2020 - galaxy-dev - lists.galaxyproject.org

Expose local filesystem to Galaxy?
by Sandra Maksimovic 15 Dec '20

15 Dec '20

Hi there, We are hosting an on-prem Galaxy instance in a HPC environment. Our research staff would like the ability to manipulate raw data that is located on the shared filesystem without having to manually upload it into Galaxy. Is this currently supported and would there be any related documentation? Thanks, Sandra

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Galaxy Papercuts CoFest Day: December 17
by Dave Clements 14 Dec '20

14 Dec '20

Hello all, The third Galaxy Paper Cuts day will be held on Thursday, December 17. It will be a day long, around-the-world event, with calls about every 3 hours, plus Gitter chat and support all day. See https://galaxyproject.org/events/2020-12-papercuts/ “Paper cuts” are annoying, but relatively easy to fix bugs. They are also a great way to become familiar with how to contribute code and other updates. This paper cut event applies to the entire Galaxy ecosystem. In addition to learning and fixing, you can also help by * Creating GitHub issues for anything in Galaxy that bugs you and is likely to be easy to fix.* * Advertising this event in your communities. We are particularly reaching to research software engineers and students. We hope to see you online on Thursday! Cheers, Dave C on behalf of the PaperCuts organizers * What’s easy to fix? Trust your instincts on this. We want to hear about glitches, even if they turn out to be harder to fix. -- https://galaxyproject.org/

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December 2020 Galaxy Newsletter: And what a month it is
by Dave Clements 08 Dec '20

08 Dec '20

Hello all, The December 2020 newsletter is out https://galaxyproject.org/news/2020-12-galaxy-update/ And there is a lot to it: ---------------- Event news: Webinars: Use Galaxy anywhere, right now, December 9 Chloroplast Genome Assembly, December 10 First Metabolomics Community Call, December 10 Galaxy Developer Round Table: Working Groups, December 10 Papercuts CollaborationFest: December 17 Galaxy Admin Training: Apply by December 18 Tripal CodeFest 2021: January 11-15 GTN Smörgåsbord: A Global Galaxy Course. Register by February 1 Galaxy platform news: CLIP-Explorer, a new server for CLIP-Seq data GenAP expansion funded by CANARIE (Canada!) UseGalaxy.eu gets more storage and GPUs through deNBI-Cloud Plus more UseGalaxy.* news Blog posts: Outcome of the BioHackathon Europe Accessible single-cell RNA-sequencing bioinformatics training using Galaxy TIaaS and training feedback Training material and doc updates: Chloroplast genome assembly Compute and analyze Essential Biodiversity Variables with PAMPA toolsuite 16S Microbial analysis with Nanopore data Publications Metaproteomics, CLIP-Explorer, GIANT, and package management is your friend Q: Who's hiring? Europe: Max Planck IIE, University of Oslo, Hannover Medical School, EMBL Rome, Norwegian University of Life Science, Sorbonne-Université North America: Roche, Johns Hopkins (AnVIL, 2 positions; Galaxy, 2 Positions), Cleveland Clinic A: Everyone, it seems. New releases: Galaxy 20.09 ENA submission OMERO accessible from Galaxy CloudLaunch Other news too -------------------- Happy Holidays! Dave C and Beatriz, on behalf of, well, everyone -- https://galaxyproject.org/

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05 Dec '20

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Get Expert Plumbing Services Round The Clock From Certified Plumbers!
by turstedcaptain＠gmail.com 05 Dec '20

05 Dec '20

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by turstedcaptain＠gmail.com 05 Dec '20

05 Dec '20

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04 Dec '20

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Two Important Galaxy Calls Next Week
by Dave Clements 03 Dec '20

03 Dec '20

Hi All, There are two important Galaxy related calls next week. Please consider: * spreading the word about the first one to your communities. * attending both Details are below. Thanks, Dave C ============= Please consider attending this one, and announcing it to your communities: **Use Galaxy on the web, the cloud, and your laptop too: Options for using Galaxy: everywhere and right now** Wednesday, December 3rd, 11am Eastern US time (see your time: https://bit.ly/2VABo3X) https://galaxyproject.org/events/2020-12-webinar-where/ This Galaxy webinar will introduce the many options for using Galaxy right now and anywhere in the world. We'll cover * Publicly accessible Galaxy servers on the web (there are over 100 of them) * Research and commercial cloud platforms, from Australia (Nectar) to the US (Jetstream, AnVIL), and everywhere in between (CloudLaunch) * On your laptop, using pre-packaged containers and virtual machines. The webinar will be at 11am Eastern US time (see your time). Enis Afgan, Anton Nekrutenko, and Mike Schatz will present. Interested? Please sign up now: https://bit.ly/2020-12-webinar-register ============ Please consider attending this one: **Get Involved with Galaxy: Introducing Galaxy Working Groups** Thursday, December 10, Noon Eastern US (see your time: https://bit.ly/3g6J8nN) https://galaxyproject.org/events/2020-12-10-dev-roundtable/ Galaxy has grown a lot of the years, going from a project at one university in 2005 to the global community it is today. Several parts of the Galaxy ecosystem have become avowedly and obviously community driven during that time, including tools, code, training, and several other international efforts. It is past time to push this global model to other areas of Galaxy as well. At the December 10 Galaxy Developer Roundtable we will introduce Galaxy Working Groups as a means for the community to help manage and contribute to key parts of the Galaxy ecosystem. If you are interested and are potentially willing to contribute some of your time and effort to helping the global Galaxy effort, then please attend this roundtable on December 10. If you can't make it, the gathering will be recorded and published shortly after the event. -- https://galaxyproject.org/

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