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PaperCuts CoFest Day - Jan 21
by Beatriz Serrano-Solano 18 Jan '21

18 Jan '21

Hi all, We are hosting the Papercuts Day this Thursday all over the day, starting in Australia and finishing in America. Papercuts Day is a collaboration fest to fix minor but annoying bugs in Galaxy (should be doable in one day). These bugs are tagged in different repositories and you can definitely help to find new issues! All the tags, repositories, links to the calls are here: https://galaxyproject.org/events/2021-01-papercuts/ If you are interested in fixing these bugs, or want to learn from the Galaxy developers, please join! Or if you know someone that might be interested, please also encourage them to join :) See you on Thursday! Dave Clements and Beatriz Serrano

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2nd Galaxy-ELIXIR webinar series - Please register
by Beatriz Serrano-Solano 15 Jan '21

15 Jan '21

Hi all, Next week on Wednesday starts the '*2nd Galaxy-ELIXIR webinar series: Open Data Infrastructures to tackle COVID-19 pandemic*'. For 6 weeks, several speakers from the worldwide Galaxy community will cover the recent developments in Galaxy highlighting the importance of open science and infrastructures. The first one, 'Lessons learned and introduction to the series', will be next Wednesday at *5 pm CET*, by Anton Nekrutenko and Marius van den Beek. If you are interested, *please register here*: https://elixir-europe.org/events/2nd-galaxy-elixir-webinar-series Hope to see many of you there! Cheers, Bea

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January 2021 Galaxy Newsletter
by Dave Clements 07 Jan '21

07 Jan '21

Hello all, We are pleased to announce the first newsletter of 2021. As you can see there is a lot happening this month, starting with a working groups call about one hour from now. Thank you for persevering through 2020, and we hope that 2021 will be a better year for the world, and for this community. Dave Clements and Beatriz Serrano-Solano - *Event news <https://galaxyproject.org/news/2021-01-galaxy-update/#event-news>*: - 2nd Galaxy-ELIXIR webinar series, *starts January 20* - Galaxy Developer Roundtables, *January 7 & 21* - Papercuts CollaborationFest: *January 21* - Future Galaxy Admin Trainings, *Register your interest* - Tripal CodeFest 2021: *January 11-15* - Structural Variant Detection using ONT Data, *January 26* - GTN Smörgåsbord: A Global Galaxy Course. *Register by February 1* - Single-cell RNA-seq & network analysis using Galaxy and Cytoscape, *Apply by 26 February* - *Galaxy platform news <https://galaxyproject.org/news/2021-01-galaxy-update/#galaxy-platforms-news>:* - UseGalaxy.no - VINYL on Laniakea - W4M on UseGalaxy.fr - Center for Phage Technology server upgraded and improved - Plus more UseGalaxy.* news - *Blog posts <https://galaxyproject.org/news/2021-01-galaxy-update/#galactic-blog-activity>:* - Involvement of the Galaxy community in OLS-2 and invitation to apply to the next cohort - DDA and DIA proteomic analysis in Galaxy - GTN plant-related trainings - *Training material and doc updates <https://galaxyproject.org/news/2021-01-galaxy-update/#doc-hub-and-training-…>*: - Videos: Galactic Introductions - Videos: Quick Tips - *Publications <https://galaxyproject.org/news/2021-01-galaxy-update/#publications>* - Metaproteomics, CorGAT (SARS-CoV-2), GAIT-GM (metabolites), and training - *Q: Who's hiring? <https://galaxyproject.org/news/2021-01-galaxy-update/#whos-hiring>* - Europe: - Norwegian University of Life Science, IFB, VIB - North America: - Roche, Johns Hopkins (AnVIL, 2 positions; Galaxy, 2 Positions) - *New releases <https://galaxyproject.org/news/2021-01-galaxy-update/#releases>*: - Planemo 0.74.1 -- https://galaxyproject.org/

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Expose local filesystem to Galaxy?
by Sandra Maksimovic 15 Dec '20

15 Dec '20

Hi there, We are hosting an on-prem Galaxy instance in a HPC environment. Our research staff would like the ability to manipulate raw data that is located on the shared filesystem without having to manually upload it into Galaxy. Is this currently supported and would there be any related documentation? Thanks, Sandra

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Galaxy Papercuts CoFest Day: December 17
by Dave Clements 14 Dec '20

14 Dec '20

Hello all, The third Galaxy Paper Cuts day will be held on Thursday, December 17. It will be a day long, around-the-world event, with calls about every 3 hours, plus Gitter chat and support all day. See https://galaxyproject.org/events/2020-12-papercuts/ “Paper cuts” are annoying, but relatively easy to fix bugs. They are also a great way to become familiar with how to contribute code and other updates. This paper cut event applies to the entire Galaxy ecosystem. In addition to learning and fixing, you can also help by * Creating GitHub issues for anything in Galaxy that bugs you and is likely to be easy to fix.* * Advertising this event in your communities. We are particularly reaching to research software engineers and students. We hope to see you online on Thursday! Cheers, Dave C on behalf of the PaperCuts organizers * What’s easy to fix? Trust your instincts on this. We want to hear about glitches, even if they turn out to be harder to fix. -- https://galaxyproject.org/

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December 2020 Galaxy Newsletter: And what a month it is
by Dave Clements 08 Dec '20

08 Dec '20

Hello all, The December 2020 newsletter is out https://galaxyproject.org/news/2020-12-galaxy-update/ And there is a lot to it: ---------------- Event news: Webinars: Use Galaxy anywhere, right now, December 9 Chloroplast Genome Assembly, December 10 First Metabolomics Community Call, December 10 Galaxy Developer Round Table: Working Groups, December 10 Papercuts CollaborationFest: December 17 Galaxy Admin Training: Apply by December 18 Tripal CodeFest 2021: January 11-15 GTN Smörgåsbord: A Global Galaxy Course. Register by February 1 Galaxy platform news: CLIP-Explorer, a new server for CLIP-Seq data GenAP expansion funded by CANARIE (Canada!) UseGalaxy.eu gets more storage and GPUs through deNBI-Cloud Plus more UseGalaxy.* news Blog posts: Outcome of the BioHackathon Europe Accessible single-cell RNA-sequencing bioinformatics training using Galaxy TIaaS and training feedback Training material and doc updates: Chloroplast genome assembly Compute and analyze Essential Biodiversity Variables with PAMPA toolsuite 16S Microbial analysis with Nanopore data Publications Metaproteomics, CLIP-Explorer, GIANT, and package management is your friend Q: Who's hiring? Europe: Max Planck IIE, University of Oslo, Hannover Medical School, EMBL Rome, Norwegian University of Life Science, Sorbonne-Université North America: Roche, Johns Hopkins (AnVIL, 2 positions; Galaxy, 2 Positions), Cleveland Clinic A: Everyone, it seems. New releases: Galaxy 20.09 ENA submission OMERO accessible from Galaxy CloudLaunch Other news too -------------------- Happy Holidays! Dave C and Beatriz, on behalf of, well, everyone -- https://galaxyproject.org/

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05 Dec '20

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05 Dec '20

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